Choi_ESC_iPSC_differential_expression_files
ED_Fig_2b_CNV_analysis_files
ED_Fig_3b_CNV_analysis_files
ED_Fig_3ghi_Ma_et_al_analysis_files
ED_Fig_4fgh_PNP_iPSC_analysis_files
ED_Fig_4i_lenti_insertion_analysis_files
REVISION_differentiation_quantifications_files
REVISION_imprinting_analyses_files
SCNT_differential_expression_files
all_differential_peaks_primed_downhomer
all_differential_peaks_primed_uphomer
MEL1_differential_atac_peak_table.txt.gz
all_differential_peaks_primed_down.bed
all_differential_peaks_primed_up.bed
psc_peaks.narrowPeak.counts.txt.gz
Choi_ESC_iPSC_differential_expression.Rmd
Choi_ESC_iPSC_differential_expression.md
ED_Fig_2b_CNV_analysis.Rmd
ED_Fig_2b_CNV_analysis.md
ED_Fig_3b_CNV_analysis.html
ED_Fig_3ghi_Ma_et_al_analysis.Rmd
ED_Fig_3ghi_Ma_et_al_analysis.md
ED_Fig_4fgh_PNP_iPSC_analysis.Rmd
ED_Fig_4fgh_PNP_iPSC_analysis.md
ED_Fig_4i_lenti_insertion_analysis.Rmd
ED_Fig_4i_lenti_insertion_analysis.md
MEL1_TE_differential_expression_analysis.Rmd
REVISION_Koyanagi_Ruiz_genes_TE_methylation.Rmd
REVISION_Koyanagi_Ruiz_genes_TE_methylation.md
REVISION_Koyanagi_genes_TE_methylation.R
REVISION_MEL1_differential_expression_analysis.Rmd
REVISION_differentiation_quantifications.Rmd
REVISION_differentiation_quantifications.md
REVISION_imprinting_analyses.Rmd
REVISION_imprinting_analyses.md
SCNT_differential_expression.Rmd
SCNT_differential_expression.html
SCNT_differential_expression.md
atac_differential_analysis.Rmd
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