pyproject.toml

[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "genofusion"
description = "A tool for bioinformatics analysis of gene fusion events."
readme = "README.md"
requires-python = ">=3.10,<3.13"
license = { text = "Apache-2.0" }
authors = [
    {name = "Nathan Fargo", email = "ntfargo@proton.me"},
]
keywords = [
    "bioinformatics",
    "genomics",
    "gene-fusion",
    "transcriptomics",
    "rna-seq",
    "fusion",
    "deep-learning",
    "analysis",
    "CRISPR",
    "python"
]

classifiers = [
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: Unix",
    "Operating System :: POSIX",
    "Operating System :: MacOS :: MacOS X",
    "Intended Audience :: Science/Research",
    "Intended Audience :: Developers",
    "Topic :: Software Development :: Libraries :: Application Frameworks",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Topic :: Software Development :: Libraries :: Backend",
    "Topic :: Software Development :: Libraries",
    "Topic :: Software Development",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12"
]

dependencies = [
    'pandas>=2.0.0',
    'regex',
    'biopython>=1.81',
    'pygad',
    'numpy>=1.24.0',
    'scipy>=1.10.0',
    'scikit-learn>=1.3.0',
    'viennarna',
    'tensorflow>=2.15.0,<2.16.1 ; platform_system != "Darwin"',
    'tensorflow-macos>=2.15.0,<=2.16.1 ; platform_system == "Darwin" and platform_machine == "arm64"',
    'tensorflow-macos>=2.15.0,<=2.16.1 ; platform_system == "Darwin" and platform_machine == "x86_64"',
    'protobuf<=5.27.0',
    'silence_tensorflow',
    'flask>=2.0.0',
]

dynamic = ["version"]