From 6856214c4395bbf275a1fc19bf0f323abcbed3ba Mon Sep 17 00:00:00 2001 From: lcolladotor Date: Fri, 13 Dec 2024 10:44:34 -0500 Subject: [PATCH] Try a different order in GHA --- .github/workflows/check-bioc.yml | 16 ++++++---------- 1 file changed, 6 insertions(+), 10 deletions(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index d3c8b80..5912377 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -179,6 +179,12 @@ jobs: continue-on-error: true shell: Rscript {0} + - name: Install development spatialLIBD + run: | + ## Install spatialLIBD from latest git commit + BiocManager::install("LieberInstitute/spatialLIBD", build_vignettes = FALSE) + shell: Rscript {0} + - name: Install dependencies pass 2 run: | ## Pass #2 at installing dependencies @@ -186,16 +192,6 @@ jobs: remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, force = TRUE) shell: Rscript {0} - - name: Install development spatialLIBD - run: | - ## Install spatialLIBD from latest git commit - BiocManager::install("LieberInstitute/spatialLIBD") - - ## We also need the development version of BiocCheck (temporarily) - ## due to https://github.com/Bioconductor/BiocCheck/commit/481d8d1fa9c5ac32672d1119a058b8add2a933ed - BiocManager::install("Bioconductor/BiocCheck") - shell: Rscript {0} - - name: Install BiocGenerics if: env.has_RUnit == 'true' run: |