From 4b35386fee29a99c1b25d0675d47b9de8b3c1382 Mon Sep 17 00:00:00 2001 From: lcolladotor Date: Fri, 26 Jul 2024 14:25:04 -0400 Subject: [PATCH] Address this note https://github.com/LieberInstitute/visiumStitched/actions/runs/10114106002/job/27971983079#step:21:111 Co-authored-by: Nick Eagles --- R/array_coord_utils.R | 2 +- R/rescale_fiji_inputs.R | 2 +- man/dot-fit_to_array.Rd | 2 +- man/rescale_fiji_inputs.Rd | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/R/array_coord_utils.R b/R/array_coord_utils.R index a8da820..89ce646 100644 --- a/R/array_coord_utils.R +++ b/R/array_coord_utils.R @@ -123,7 +123,7 @@ #' @param inter_spot_dist_px \code{numeric(1)} vector giving the pixel distance #' between any 2 spots in the new coordinates. #' -#' @return A [tibble][tibble::tibble] with modified \code{array_row} + \code{array_col} +#' @return A [tibble][dplyr::reexports] with modified \code{array_row} + \code{array_col} #' columns, as well as new \code{pxl_row_in_fullres_rounded} and #' \code{pxl_col_in_fullres_rounded} columns representing the pixel coordinates #' rounded to the nearest exact array coordinates. diff --git a/R/rescale_fiji_inputs.R b/R/rescale_fiji_inputs.R index e6f4a07..b87a2fe 100644 --- a/R/rescale_fiji_inputs.R +++ b/R/rescale_fiji_inputs.R @@ -25,7 +25,7 @@ #' will be created if necessary. #' @inheritParams add_array_coords #' -#' @return A [tibble][tibble::tibble]: a copy of \code{sample_info} with +#' @return A [tibble][dplyr::reexports]: a copy of \code{sample_info} with #' additional columns #' \code{intra_group_scalar} and \code{group_hires_scalef}. #' diff --git a/man/dot-fit_to_array.Rd b/man/dot-fit_to_array.Rd index 47072cb..93889d4 100644 --- a/man/dot-fit_to_array.Rd +++ b/man/dot-fit_to_array.Rd @@ -15,7 +15,7 @@ same group, and containing columns 'array_row', 'array_col', between any 2 spots in the new coordinates.} } \value{ -A \link[tibble:tibble]{tibble} with modified \code{array_row} + \code{array_col} +A \link[dplyr:reexports]{tibble} with modified \code{array_row} + \code{array_col} columns, as well as new \code{pxl_row_in_fullres_rounded} and \code{pxl_col_in_fullres_rounded} columns representing the pixel coordinates rounded to the nearest exact array coordinates. diff --git a/man/rescale_fiji_inputs.Rd b/man/rescale_fiji_inputs.Rd index 37c8953..b7c257a 100644 --- a/man/rescale_fiji_inputs.Rd +++ b/man/rescale_fiji_inputs.Rd @@ -17,7 +17,7 @@ place the output images. Provided the parent directory exists, \code{out_dir} will be created if necessary.} } \value{ -A \link[tibble:tibble]{tibble}: a copy of \code{sample_info} with +A \link[dplyr:reexports]{tibble}: a copy of \code{sample_info} with additional columns \code{intra_group_scalar} and \code{group_hires_scalef}. }