From ba2f3e305727c1305abbf557073a370f4d84f02f Mon Sep 17 00:00:00 2001 From: Louise Huuki Date: Fri, 17 May 2024 13:39:22 -0400 Subject: [PATCH] comment out scater::plotColData from example to debug --- R/metrics_qc.R | 2 +- man/metrics_qc.Rd | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/R/metrics_qc.R b/R/metrics_qc.R index 2f2318ac..879747c9 100644 --- a/R/metrics_qc.R +++ b/R/metrics_qc.R @@ -34,7 +34,7 @@ #' #' vis_clus(spe_qc, sample_id = "151507", clustervar = "scran_low_lib_size") #' -#' scater::plotColData(spe_qc[, spe_qc$in_tissue], x = "sample_id", y = "sum_umi", colour_by = "scran_low_lib_size") +#' # scater::plotColData(spe_qc[, spe_qc$in_tissue], x = "sample_id", y = "sum_umi", colour_by = "scran_low_lib_size") #' #' vis_clus(spe_qc, sampleid = "151507", clustervar = "scran_discard") #' vis_clus(spe_qc, sampleid = "151507", clustervar = "scran_low_lib_size_edge") diff --git a/man/metrics_qc.Rd b/man/metrics_qc.Rd index 5f4850de..4f201a95 100644 --- a/man/metrics_qc.Rd +++ b/man/metrics_qc.Rd @@ -41,7 +41,7 @@ if (enough_ram()) { vis_clus(spe_qc, sample_id = "151507", clustervar = "scran_low_lib_size") - scater::plotColData(spe_qc[, spe_qc$in_tissue], x = "sample_id", y = "sum_umi", colour_by = "scran_low_lib_size") + # scater::plotColData(spe_qc[, spe_qc$in_tissue], x = "sample_id", y = "sum_umi", colour_by = "scran_low_lib_size") vis_clus(spe_qc, sampleid = "151507", clustervar = "scran_discard") vis_clus(spe_qc, sampleid = "151507", clustervar = "scran_low_lib_size_edge")