vignettes/slurmjobs.Rmd
slurmjobs.Rmdslurmjobs#> doi:10.18129/B9.bioc.slurmjobs
#> <https://doi.org/10.18129/B9.bioc.slurmjobs>,
#> https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package
-#> version 1.0.0, <http://www.bioconductor.org/packages/slurmjobs>.
+#> version 1.1.0, <http://www.bioconductor.org/packages/slurmjobs>.
#>
#> LieberInstitute (2023). "slurmjobs: Helper Functions for SLURM Jobs."
#> _bioRxiv_. doi:10.1101/TODO <https://doi.org/10.1101/TODO>,
@@ -206,7 +206,7 @@ sbatch
job_single(
name = "my_shell_script", memory = "10G", cores = 2, create_shell = FALSE
)
-#> 2023-11-02 15:48:32.980328 creating the logs directory at: logs
+#> 2023-11-29 17:35:06.907044 creating the logs directory at: logs
#> #!/bin/bash
#> #SBATCH -p shared
#> #SBATCH --mem=10G
@@ -240,7 +240,7 @@ Creating Shell Scripts to sbatch
#> echo "**** Job ends ****"
#> date
#>
-#> ## This script was made using slurmjobs version 1.0.0
+#> ## This script was made using slurmjobs version 1.1.0
#> ## available from http://research.libd.org/slurmjobs/
Similarly, we can specify task_num to create an array
job– in this case, one with 10 tasks.
@@ -249,7 +249,7 @@ Creating Shell Scripts to sbatch
name = "my_array_job", memory = "5G", cores = 1, create_shell = FALSE,
task_num = 10
)
-#> 2023-11-02 15:48:33.061712 creating the logs directory at: logs
+#> 2023-11-29 17:35:06.97852 creating the logs directory at: logs
#> #!/bin/bash
#> #SBATCH -p shared
#> #SBATCH --mem=5G
@@ -284,7 +284,7 @@ Creating Shell Scripts to sbatch
#> echo "**** Job ends ****"
#> date
#>
-#> ## This script was made using slurmjobs version 1.0.0
+#> ## This script was made using slurmjobs version 1.1.0
#> ## available from http://research.libd.org/slurmjobs/
Another function, job_loop(), can be used to create more
complex array jobs as compared with job_single(). It’s
@@ -355,7 +355,7 @@
Creating Shell Scripts to sbatch
#>
#> } > $log_path 2>&1
#>
-#> ## This script was made using slurmjobs version 1.0.0
+#> ## This script was made using slurmjobs version 1.1.0
#> ## available from http://research.libd.org/slurmjobs/
First, note the line
Rscript bsp2_test.R --region ${region} --feature ${feature}.
@@ -391,7 +391,7 @@
Creating Shell Scripts to sbatch
#>
#> session_info()
#>
-#> ## This script was made using slurmjobs version 1.0.0
+#> ## This script was made using slurmjobs version 1.1.0
#> ## available from http://research.libd.org/slurmjobs/
The code related to getopt at the top of the script
reads in the unique combination of variable values into a list called
@@ -420,8 +420,8 @@
Submitting and Resubmitting Jobs name = "my_array_job", memory = "5G", cores = 1, create_shell = TRUE,
task_num = 10
)
-#> 2023-11-02 15:48:33.296813 creating the logs directory at: logs
-#> 2023-11-02 15:48:33.298239 creating the shell file my_array_job.sh
+#> 2023-11-29 17:35:07.178479 creating the logs directory at: logs
+#> 2023-11-29 17:35:07.179378 creating the shell file my_array_job.sh
#> To submit the job use: sbatch my_array_job.sh
# Suppose that tasks 3, 6, 7, and 8 failed
@@ -649,9 +649,9 @@ Reproducibilitylibrary("knitr")
knit("slurmjobs.Rmd", tangle = TRUE)
Date the vignette was generated.
-#> [1] "2023-11-02 15:48:34 UTC"
+#> [1] "2023-11-29 17:35:08 UTC"
Wallclock time spent generating the vignette.
-#> Time difference of 2.336 secs
+#> Time difference of 1.884 secs
R session information.
#> ─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
#> setting value
@@ -663,36 +663,36 @@ Reproducibility#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz UTC
-#> date 2023-11-02
+#> date 2023-11-29
#> pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
-#> backports 1.4.1 2021-12-13 [1] CRAN (R 4.3.1)
-#> bibtex 0.5.1 2023-01-26 [1] CRAN (R 4.3.1)
+#> backports 1.4.1 2021-12-13 [1] RSPM (R 4.3.0)
+#> bibtex 0.5.1 2023-01-26 [1] RSPM (R 4.3.0)
#> BiocManager 1.30.22 2023-08-08 [2] CRAN (R 4.3.2)
#> BiocStyle * 2.30.0 2023-10-24 [1] Bioconductor
#> bookdown 0.36 2023-10-16 [1] RSPM (R 4.3.0)
-#> bslib 0.5.1 2023-08-11 [2] RSPM (R 4.3.0)
+#> bslib 0.6.0 2023-11-21 [2] RSPM (R 4.3.0)
#> cachem 1.0.8 2023-05-01 [2] RSPM (R 4.3.0)
#> cli 3.6.1 2023-03-23 [2] RSPM (R 4.3.0)
#> crayon 1.5.2 2022-09-29 [2] RSPM (R 4.3.0)
#> desc 1.4.2 2022-09-08 [2] RSPM (R 4.3.0)
#> digest 0.6.33 2023-07-07 [2] RSPM (R 4.3.0)
-#> dplyr * 1.1.3 2023-09-03 [1] CRAN (R 4.3.1)
-#> evaluate 0.22 2023-09-29 [2] RSPM (R 4.3.0)
+#> dplyr * 1.1.4 2023-11-17 [1] RSPM (R 4.3.0)
+#> evaluate 0.23 2023-11-01 [2] RSPM (R 4.3.0)
#> fansi 1.0.5 2023-10-08 [2] RSPM (R 4.3.0)
#> fastmap 1.1.1 2023-02-24 [2] RSPM (R 4.3.0)
#> fs 1.6.3 2023-07-20 [2] RSPM (R 4.3.0)
-#> generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.1)
+#> generics 0.1.3 2022-07-05 [1] RSPM (R 4.3.0)
#> glue 1.6.2 2022-02-24 [2] RSPM (R 4.3.0)
-#> htmltools 0.5.6.1 2023-10-06 [2] RSPM (R 4.3.0)
+#> htmltools 0.5.7 2023-11-03 [2] RSPM (R 4.3.0)
#> httr 1.4.7 2023-08-15 [2] RSPM (R 4.3.0)
#> jquerylib 0.1.4 2021-04-26 [2] RSPM (R 4.3.0)
#> jsonlite 1.8.7 2023-06-29 [2] RSPM (R 4.3.0)
-#> knitcitations * 1.0.12 2021-01-10 [1] CRAN (R 4.3.1)
+#> knitcitations * 1.0.12 2021-01-10 [1] RSPM (R 4.3.0)
#> knitr 1.45 2023-10-30 [2] RSPM (R 4.3.0)
-#> lifecycle 1.0.3 2022-10-07 [2] RSPM (R 4.3.0)
+#> lifecycle 1.0.4 2023-11-07 [2] RSPM (R 4.3.0)
#> lubridate 1.9.3 2023-09-27 [1] RSPM (R 4.3.0)
#> magrittr 2.0.3 2022-03-30 [2] RSPM (R 4.3.0)
#> memoise 2.0.1 2021-11-26 [2] RSPM (R 4.3.0)
@@ -704,24 +704,24 @@ Reproducibility#> R6 2.5.1 2021-08-19 [2] RSPM (R 4.3.0)
#> ragg 1.2.6 2023-10-10 [2] RSPM (R 4.3.0)
#> Rcpp 1.0.11 2023-07-06 [2] RSPM (R 4.3.0)
-#> RefManageR * 1.4.0 2022-09-30 [1] CRAN (R 4.3.1)
-#> rlang 1.1.1 2023-04-28 [2] RSPM (R 4.3.0)
+#> RefManageR * 1.4.0 2022-09-30 [1] RSPM (R 4.3.0)
+#> rlang 1.1.2 2023-11-04 [2] RSPM (R 4.3.0)
#> rmarkdown 2.25 2023-09-18 [2] RSPM (R 4.3.0)
-#> rprojroot 2.0.3 2022-04-02 [2] RSPM (R 4.3.0)
+#> rprojroot 2.0.4 2023-11-05 [2] RSPM (R 4.3.0)
#> sass 0.4.7 2023-07-15 [2] RSPM (R 4.3.0)
#> sessioninfo * 1.2.2 2021-12-06 [2] RSPM (R 4.3.0)
-#> slurmjobs * 1.0.0 2023-11-02 [1] local
-#> stringi 1.7.12 2023-01-11 [2] RSPM (R 4.3.0)
-#> stringr 1.5.0 2022-12-02 [2] RSPM (R 4.3.0)
+#> slurmjobs * 1.1.0 2023-11-29 [1] local
+#> stringi 1.8.1 2023-11-13 [2] RSPM (R 4.3.0)
+#> stringr 1.5.1 2023-11-14 [2] RSPM (R 4.3.0)
#> systemfonts 1.0.5 2023-10-09 [2] RSPM (R 4.3.0)
#> textshaping 0.3.7 2023-10-09 [2] RSPM (R 4.3.0)
#> tibble 3.2.1 2023-03-20 [2] RSPM (R 4.3.0)
-#> tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.1)
-#> timechange 0.2.0 2023-01-11 [1] CRAN (R 4.3.1)
+#> tidyselect 1.2.0 2022-10-10 [1] RSPM (R 4.3.0)
+#> timechange 0.2.0 2023-01-11 [1] RSPM (R 4.3.0)
#> utf8 1.2.4 2023-10-22 [2] RSPM (R 4.3.0)
#> vctrs 0.6.4 2023-10-12 [2] RSPM (R 4.3.0)
#> withr 2.5.2 2023-10-30 [2] RSPM (R 4.3.0)
-#> xfun 0.40 2023-08-09 [2] RSPM (R 4.3.0)
+#> xfun 0.41 2023-11-01 [2] RSPM (R 4.3.0)
#> xml2 1.3.5 2023-07-06 [2] RSPM (R 4.3.0)
#> yaml 2.3.7 2023-01-23 [2] RSPM (R 4.3.0)
#>
@@ -749,7 +749,7 @@ Bibliography[2]
LieberInstitute. slurmjobs: Helper Functions for SLURM Jobs. https://github.com/LieberInstitute/slurmjobs/slurmjobs -
-R package version 1.0.0. 2023. DOI:
+R package version 1.1.0. 2023. DOI:
10.18129/B9.bioc.slurmjobs.
URL:
http://www.bioconductor.org/packages/slurmjobs.
@@ -791,8 +791,8 @@ Bibliography[8]
H. Wickham, R. François, L. Henry, et al. dplyr: A Grammar of Data
-Manipulation. R package version 1.1.3. 2023. URL:
-https://CRAN.R-project.org/package=dplyr.
+Manipulation. R package version 1.1.4, https://github.com/tidyverse/dplyr. 2023. URL:
+https://dplyr.tidyverse.org.
[9]
diff --git a/authors.html b/authors.html
index 37002de..6541160 100644
--- a/authors.html
+++ b/authors.html
@@ -17,7 +17,7 @@
@@ -66,14 +66,14 @@ Citation
LieberInstitute (2023).
slurmjobs: Helper Functions for SLURM Jobs.
-doi:10.18129/B9.bioc.slurmjobs, https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.0.0, http://www.bioconductor.org/packages/slurmjobs.
+doi:10.18129/B9.bioc.slurmjobs, https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.1.0, http://www.bioconductor.org/packages/slurmjobs.
@Manual{,
title = {slurmjobs: Helper Functions for SLURM Jobs},
author = {{LieberInstitute}},
year = {2023},
url = {http://www.bioconductor.org/packages/slurmjobs},
- note = {https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.0.0},
+ note = {https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.1.0},
doi = {10.18129/B9.bioc.slurmjobs},
}
LieberInstitute (2023).
diff --git a/index.html b/index.html
index ec54b39..a3f0a28 100644
--- a/index.html
+++ b/index.html
@@ -37,7 +37,7 @@
diff --git a/news/index.html b/news/index.html
index 7d8d038..5e801bc 100644
--- a/news/index.html
+++ b/news/index.html
@@ -17,7 +17,7 @@
@@ -50,6 +50,14 @@
Changelog
Source: NEWS.md
+
+slurmjobs 1.1.0
+NEW FEATURES
+-
+
job_single(), job_loop(), and array_submit() now may accept a name, relative path, or absolute path as the name argument. This means the working directory is no longer relevant in successfully calling these functions
+-
+
job_info() and job_report() now also return a wallclock_time column, giving the elapsed wallclock time of jobs as difftimes
+
slurmjobs 1.0.0
NEW FEATURES
diff --git a/pkgdown.yml b/pkgdown.yml
index 2dc0a25..800b2e6 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -3,5 +3,5 @@ pkgdown: 2.0.7
pkgdown_sha: ~
articles:
slurmjobs: slurmjobs.html
-last_built: 2023-11-02T15:48Z
+last_built: 2023-11-29T17:34Z
diff --git a/reference/array_submit.html b/reference/array_submit.html
index 6f6d01d..eca0948 100644
--- a/reference/array_submit.html
+++ b/reference/array_submit.html
@@ -23,7 +23,7 @@
@@ -80,8 +80,8 @@ Submit an array job with a specified set of task IDs
Arguments
- name
-A character(1) vector with the name of a bash script
-in the current working directory (excluding '.sh')
A character(1) vector giving either the name or path (relative
+or absolute) to the shell or R script to create.
- task_ids
@@ -136,9 +136,9 @@ Examples
create_shell = TRUE,
task_num = 100
)
-#> 2023-11-02 15:48:28.795857 creating the logs directory at: logs
-#> 2023-11-02 15:48:28.797326 creating the shell file array_submit_example_2023-11-02.sh
-#> To submit the job use: sbatch array_submit_example_2023-11-02.sh
+#> 2023-11-29 17:35:03.495533 creating the logs directory at: logs
+#> 2023-11-29 17:35:03.496594 creating the shell file array_submit_example_2023-11-29.sh
+#> To submit the job use: sbatch array_submit_example_2023-11-29.sh
## Now we can submit the job for a set of task IDs (or omit 'task_ids'
## to automatically grab those same failed task IDs)
diff --git a/reference/array_submit_example_2023-11-29.sh b/reference/array_submit_example_2023-11-29.sh
new file mode 100644
index 0000000..7e21507
--- /dev/null
+++ b/reference/array_submit_example_2023-11-29.sh
@@ -0,0 +1,36 @@
+#!/bin/bash
+#SBATCH -p shared
+#SBATCH --mem=10G
+#SBATCH --job-name=array_submit_example_2023-11-29
+#SBATCH -c 1
+#SBATCH -o logs/array_submit_example_2023-11-29.%a.txt
+#SBATCH -e logs/array_submit_example_2023-11-29.%a.txt
+#SBATCH --mail-type=ALL
+#SBATCH --array=1-100%20
+
+set -e
+
+echo "**** Job starts ****"
+date
+
+echo "**** JHPCE info ****"
+echo "User: ${USER}"
+echo "Job id: ${SLURM_JOB_ID}"
+echo "Job name: ${SLURM_JOB_NAME}"
+echo "Node name: ${SLURMD_NODENAME}"
+echo "Task id: ${SLURM_ARRAY_TASK_ID}"
+
+## Load the R module
+module load conda_R/4.3
+
+## List current modules for reproducibility
+module list
+
+## Edit with your job command
+Rscript -e "options(width = 120); sessioninfo::session_info()"
+
+echo "**** Job ends ****"
+date
+
+## This script was made using slurmjobs version 1.1.0
+## available from http://research.libd.org/slurmjobs/
diff --git a/reference/get_list_indexing.html b/reference/get_list_indexing.html
index 4a30255..ec39b51 100644
--- a/reference/get_list_indexing.html
+++ b/reference/get_list_indexing.html
@@ -22,7 +22,7 @@
diff --git a/reference/get_short_flags.html b/reference/get_short_flags.html
index cf58713..46ef1eb 100644
--- a/reference/get_short_flags.html
+++ b/reference/get_short_flags.html
@@ -20,7 +20,7 @@
diff --git a/reference/index.html b/reference/index.html
index e0a87c1..dcfb908 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -17,7 +17,7 @@
@@ -87,6 +87,10 @@ All functions job_single()
Build a SLURM job bash script
+
+
+ Parse script name or path into shell script path
diff --git a/reference/job_info.html b/reference/job_info.html
index db75c88..39b7bb7 100644
--- a/reference/job_info.html
+++ b/reference/job_info.html
@@ -19,7 +19,7 @@
diff --git a/reference/job_info_df.html b/reference/job_info_df.html
index 46c16a9..1ac0e0c 100644
--- a/reference/job_info_df.html
+++ b/reference/job_info_df.html
@@ -18,7 +18,7 @@
diff --git a/reference/job_loop.html b/reference/job_loop.html
index a340540..7611839 100644
--- a/reference/job_loop.html
+++ b/reference/job_loop.html
@@ -18,7 +18,7 @@
@@ -80,8 +80,8 @@ Arguments
name
-A character(1) vector with the name of the script. Any spaces
-will be replaced by underscores.
A character(1) vector giving either the name or path (relative
+or absolute) to the shell script to create.
create_shell
diff --git a/reference/job_report.html b/reference/job_report.html
index 47ce60e..32ecb53 100644
--- a/reference/job_report.html
+++ b/reference/job_report.html
@@ -23,7 +23,7 @@
diff --git a/reference/job_single.html b/reference/job_single.html
index a7b311f..0ed7ab5 100644
--- a/reference/job_single.html
+++ b/reference/job_single.html
@@ -20,7 +20,7 @@
@@ -80,8 +80,8 @@ Build a SLURM job bash script
Arguments
- name
-A character(1) vector with the name of the script. Any spaces
-will be replaced by underscores.
A character(1) vector giving either the name or path (relative
+or absolute) to the shell script to create.
- create_shell
@@ -140,8 +140,7 @@ Value
A character vector with the script contents. If create_shell was
-specified then it also creates the actual script in the current
-working directory.
+specified then it also creates the actual script.
Details
@@ -163,7 +162,7 @@ Author
Examples
-## A regular job
+## A regular job, specified by name or path
job_single("jhpce_job", create_logdir = FALSE)
#> #!/bin/bash
#> #SBATCH -p shared
@@ -198,7 +197,44 @@ Examples
#> echo "**** Job ends ****"
#> date
#>
-#> ## This script was made using slurmjobs version 1.0.0
+#> ## This script was made using slurmjobs version 1.1.0
+#> ## available from http://research.libd.org/slurmjobs/
+#>
+job_single("~/jhpce_job.sh", create_logdir = FALSE)
+#> #!/bin/bash
+#> #SBATCH -p shared
+#> #SBATCH --mem=10G
+#> #SBATCH --job-name=jhpce_job
+#> #SBATCH -c 1
+#> #SBATCH -o logs/jhpce_job.txt
+#> #SBATCH -e logs/jhpce_job.txt
+#> #SBATCH --mail-type=ALL
+#>
+#> set -e
+#>
+#> echo "**** Job starts ****"
+#> date
+#>
+#> echo "**** JHPCE info ****"
+#> echo "User: ${USER}"
+#> echo "Job id: ${SLURM_JOB_ID}"
+#> echo "Job name: ${SLURM_JOB_NAME}"
+#> echo "Node name: ${SLURMD_NODENAME}"
+#> echo "Task id: ${SLURM_ARRAY_TASK_ID}"
+#>
+#> ## Load the R module
+#> module load conda_R/4.3
+#>
+#> ## List current modules for reproducibility
+#> module list
+#>
+#> ## Edit with your job command
+#> Rscript -e "options(width = 120); sessioninfo::session_info()"
+#>
+#> echo "**** Job ends ****"
+#> date
+#>
+#> ## This script was made using slurmjobs version 1.1.0
#> ## available from http://research.libd.org/slurmjobs/
#>
@@ -240,7 +276,7 @@ Examples
#> echo "**** Job ends ****"
#> date
#>
-#> ## This script was made using slurmjobs version 1.0.0
+#> ## This script was made using slurmjobs version 1.1.0
#> ## available from http://research.libd.org/slurmjobs/
#>
@@ -280,7 +316,7 @@ Examples
#> echo "**** Job ends ****"
#> date
#>
-#> ## This script was made using slurmjobs version 1.0.0
+#> ## This script was made using slurmjobs version 1.1.0
#> ## available from http://research.libd.org/slurmjobs/
#>
diff --git a/reference/parse_file_or_name.html b/reference/parse_file_or_name.html
new file mode 100644
index 0000000..6049801
--- /dev/null
+++ b/reference/parse_file_or_name.html
@@ -0,0 +1,151 @@
+
+Parse script name or path into shell script path — parse_file_or_name • slurmjobs
+
+
+
+
+
+
+
+
+
+
+
+
+ Given name, the absolute or relative path to an R or shell script,
+with or without the file extension, return the path to the shell script.
+Verify the name is legitimate in terms of file existence or existence
+of the appropriate parent directory (if name is an absolute path).
+
+
+
+ parse_file_or_name(name, should_exist, r_ok)
+
+
+
+ Arguments
+ - name
+A character(1) vector giving either the name or path
+(relative or absolute) to the shell or R script to create
- should_exist
+A logical(1) vector. If TRUE, the specified script
+must already exist; if FALSE, it must not exist
- r_ok
+A logical(1) vector. If TRUE, name may end in '.R'
+
+ Value
+
+
+A character(1) giving the absolute or relative path to the
+shell script
+
+
+
+
+ Examples
+
+acceptable_names <- c(
+ # Absolute paths/ names may be used
+ file.path(getwd(), "my_script.sh"),
+ file.path(getwd(), "my_script.R"),
+ file.path(getwd(), "my_script"),
+ # Relative paths/ names are also acceptable
+ "my_script.sh",
+ "my_script.R",
+ "my_script"
+)
+returned_scripts <- sapply(
+ acceptable_names, slurmjobs:::parse_file_or_name,
+ should_exist = FALSE, r_ok = TRUE
+)
+print(returned_scripts)
+#> /__w/slurmjobs/slurmjobs/docs/reference/my_script.sh
+#> "/__w/slurmjobs/slurmjobs/docs/reference/my_script.sh"
+#> /__w/slurmjobs/slurmjobs/docs/reference/my_script.R
+#> "/__w/slurmjobs/slurmjobs/docs/reference/my_script.sh"
+#> /__w/slurmjobs/slurmjobs/docs/reference/my_script
+#> "/__w/slurmjobs/slurmjobs/docs/reference/my_script.sh"
+#> my_script.sh
+#> "my_script.sh"
+#> my_script.R
+#> "my_script.sh"
+#> my_script
+#> "my_script.sh"
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/reference/parse_slurm_time.html b/reference/parse_slurm_time.html
index 166f358..9529fa0 100644
--- a/reference/parse_slurm_time.html
+++ b/reference/parse_slurm_time.html
@@ -18,7 +18,7 @@
diff --git a/reference/partition_df.html b/reference/partition_df.html
index 7069cb2..1a2f59e 100644
--- a/reference/partition_df.html
+++ b/reference/partition_df.html
@@ -18,7 +18,7 @@
diff --git a/reference/partition_info.html b/reference/partition_info.html
index 9b69bdc..fc684b3 100644
--- a/reference/partition_info.html
+++ b/reference/partition_info.html
@@ -19,7 +19,7 @@
diff --git a/reference/vector_as_code.html b/reference/vector_as_code.html
index 56cd24b..fa826bc 100644
--- a/reference/vector_as_code.html
+++ b/reference/vector_as_code.html
@@ -18,7 +18,7 @@
diff --git a/sitemap.xml b/sitemap.xml
index c8b408c..223e9d5 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -54,6 +54,9 @@
/reference/job_single.html
+
+ /reference/parse_file_or_name.html
+
/reference/parse_slurm_time.html