diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 3c82e91..c3afbfa 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -34,7 +34,7 @@ name: R-CMD-check-bioc ## Note that you can always run a GHA test without the cache by using the word ## "/nocache" in the commit message. env: - has_testthat: 'false' + has_testthat: 'true' run_covr: 'true' run_pkgdown: 'true' has_RUnit: 'false' @@ -253,7 +253,7 @@ jobs: - name: Test coverage if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux' run: | - covr::codecov(coverage = covr::package_coverage(type = "all")) + covr::codecov() shell: Rscript {0} - name: Install package diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml deleted file mode 100644 index 2c5bb50..0000000 --- a/.github/workflows/test-coverage.yaml +++ /dev/null @@ -1,50 +0,0 @@ -# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples -# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help -on: - push: - branches: [main, master] - pull_request: - branches: [main, master] - -name: test-coverage - -jobs: - test-coverage: - runs-on: ubuntu-latest - env: - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - - steps: - - uses: actions/checkout@v3 - - - uses: r-lib/actions/setup-r@v2 - with: - use-public-rspm: true - - - uses: r-lib/actions/setup-r-dependencies@v2 - with: - extra-packages: any::covr - needs: coverage - - - name: Test coverage - run: | - covr::codecov( - quiet = FALSE, - clean = FALSE, - install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") - ) - shell: Rscript {0} - - - name: Show testthat output - if: always() - run: | - ## -------------------------------------------------------------------- - find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true - shell: bash - - - name: Upload test results - if: failure() - uses: actions/upload-artifact@v3 - with: - name: coverage-test-failures - path: ${{ runner.temp }}/package