diff --git a/404.html b/404.html index 8b79b14..e8dcebb 100644 --- a/404.html +++ b/404.html @@ -33,7 +33,7 @@ slurmjobs - 1.2.1 + 1.2.2 diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index a32457a..63c6731 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -17,7 +17,7 @@ slurmjobs - 1.2.1 + 1.2.2 diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html index d5dc676..47157a5 100644 --- a/CONTRIBUTING.html +++ b/CONTRIBUTING.html @@ -17,7 +17,7 @@ slurmjobs - 1.2.1 + 1.2.2 diff --git a/SUPPORT.html b/SUPPORT.html index 058114e..62b2bd6 100644 --- a/SUPPORT.html +++ b/SUPPORT.html @@ -17,7 +17,7 @@ slurmjobs - 1.2.1 + 1.2.2 diff --git a/articles/index.html b/articles/index.html index 7022201..f51f1e9 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ slurmjobs - 1.2.1 + 1.2.2 diff --git a/articles/slurmjobs.html b/articles/slurmjobs.html index 9b3f18e..597103a 100644 --- a/articles/slurmjobs.html +++ b/articles/slurmjobs.html @@ -34,7 +34,7 @@ slurmjobs - 1.2.1 + 1.2.2 @@ -85,7 +85,7 @@

Leonardo University
lcolladotor@gmail.com -

29 February 2024

+

2 April 2024

Source: vignettes/slurmjobs.Rmd @@ -161,7 +161,7 @@

Citing slurmjobs#> doi:10.18129/B9.bioc.slurmjobs #> <https://doi.org/10.18129/B9.bioc.slurmjobs>, #> https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package -#> version 1.2.1, <http://www.bioconductor.org/packages/slurmjobs>. +#> version 1.2.2, <http://www.bioconductor.org/packages/slurmjobs>. #> #> LieberInstitute (2024). "slurmjobs: Helper Functions for SLURM Jobs." #> _bioRxiv_. doi:10.1101/TODO <https://doi.org/10.1101/TODO>, @@ -207,7 +207,7 @@

Creating Shell Scripts to sbatch job_single( name = "my_shell_script", memory = "10G", cores = 2, create_shell = FALSE ) -#> 2024-02-29 18:26:15.709725 creating the logs directory at: logs +#> 2024-04-02 20:30:32.853889 creating the logs directory at: logs #> #!/bin/bash #> #SBATCH -p shared #> #SBATCH --mem=10G @@ -227,7 +227,7 @@

Creating Shell Scripts to sbatch #> echo "User: ${USER}" #> echo "Job id: ${SLURM_JOB_ID}" #> echo "Job name: ${SLURM_JOB_NAME}" -#> echo "Node name: ${SLURMD_NODENAME}" +#> echo "Node name: ${HOSTNAME}" #> echo "Task id: ${SLURM_ARRAY_TASK_ID}" #> #> ## Load the R module @@ -242,7 +242,7 @@

Creating Shell Scripts to sbatch #> echo "**** Job ends ****" #> date #> -#> ## This script was made using slurmjobs version 1.2.1 +#> ## This script was made using slurmjobs version 1.2.2 #> ## available from http://research.libd.org/slurmjobs/

Similarly, we can specify task_num to create an array job– in this case, one with 10 tasks.

@@ -251,7 +251,7 @@

Creating Shell Scripts to sbatch name = "my_array_job", memory = "5G", cores = 1, create_shell = FALSE, task_num = 10 ) -#> 2024-02-29 18:26:15.780543 creating the logs directory at: logs +#> 2024-04-02 20:30:32.925053 creating the logs directory at: logs #> #!/bin/bash #> #SBATCH -p shared #> #SBATCH --mem=5G @@ -272,7 +272,7 @@

Creating Shell Scripts to sbatch #> echo "User: ${USER}" #> echo "Job id: ${SLURM_JOB_ID}" #> echo "Job name: ${SLURM_JOB_NAME}" -#> echo "Node name: ${SLURMD_NODENAME}" +#> echo "Node name: ${HOSTNAME}" #> echo "Task id: ${SLURM_ARRAY_TASK_ID}" #> #> ## Load the R module @@ -287,7 +287,7 @@

Creating Shell Scripts to sbatch #> echo "**** Job ends ****" #> date #> -#> ## This script was made using slurmjobs version 1.2.1 +#> ## This script was made using slurmjobs version 1.2.2 #> ## available from http://research.libd.org/slurmjobs/

Another function, job_loop(), can be used to create more complex array jobs as compared with job_single(). It’s @@ -342,7 +342,7 @@

Creating Shell Scripts to sbatch #> echo "User: ${USER}" #> echo "Job id: ${SLURM_JOB_ID}" #> echo "Job name: ${SLURM_JOB_NAME}" -#> echo "Node name: ${SLURMD_NODENAME}" +#> echo "Node name: ${HOSTNAME}" #> echo "Task id: ${SLURM_ARRAY_TASK_ID}" #> #> ## Load the R module @@ -359,7 +359,7 @@

Creating Shell Scripts to sbatch #> #> } > $log_path 2>&1 #> -#> ## This script was made using slurmjobs version 1.2.1 +#> ## This script was made using slurmjobs version 1.2.2 #> ## available from http://research.libd.org/slurmjobs/

First, note the line Rscript bsp2_test.R --region ${region} --feature ${feature}. @@ -395,7 +395,7 @@

Creating Shell Scripts to sbatch #> #> session_info() #> -#> ## This script was made using slurmjobs version 1.2.1 +#> ## This script was made using slurmjobs version 1.2.2 #> ## available from http://research.libd.org/slurmjobs/

The code related to getopt at the top of the script reads in the unique combination of variable values into a list called @@ -424,8 +424,8 @@

Submitting and Resubmitting Jobs name = "my_array_job", memory = "5G", cores = 1, create_shell = TRUE, task_num = 10 ) -#> 2024-02-29 18:26:15.986825 creating the logs directory at: logs -#> 2024-02-29 18:26:15.988014 creating the shell file my_array_job.sh +#> 2024-04-02 20:30:33.131896 creating the logs directory at: logs +#> 2024-04-02 20:30:33.133023 creating the shell file my_array_job.sh #> To submit the job use: sbatch my_array_job.sh # Suppose that tasks 3, 6, 7, and 8 failed @@ -634,7 +634,7 @@

Reproducibility rmarkdown (Allaire, Xie, Dervieux, McPherson, Luraschi, Ushey, Atkins, Wickham, -Cheng, Chang, and Iannone, 2023) +Cheng, Chang, and Iannone, 2024)
  • sessioninfo (Wickham, Chang, Flight, Müller, and Hester, 2021)
    • @@ -653,9 +653,9 @@

    Reproducibilitylibrary("knitr") knit("slurmjobs.Rmd", tangle = TRUE)

    Date the vignette was generated.

    -
    #> [1] "2024-02-29 18:26:16 UTC"
    +
    #> [1] "2024-04-02 20:30:34 UTC"

    Wallclock time spent generating the vignette.

    -
    #> Time difference of 1.965 secs
    +
    #> Time difference of 2.007 secs

    R session information.

    #> ─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
 #>  setting  value
@@ -667,7 +667,7 @@ 
    Reproducibility#>  collate  en_US.UTF-8
 #>  ctype    en_US.UTF-8
 #>  tz       UTC
-#>  date     2024-02-29
+#>  date     2024-04-02
 #>  pandoc   3.1.1 @ /usr/local/bin/ (via rmarkdown)
 #> 
 #> ─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
@@ -676,13 +676,13 @@ 
    Reproducibility#>  bibtex          0.5.1   2023-01-26 [1] RSPM (R 4.3.0)
 #>  BiocManager     1.30.22 2023-08-08 [2] CRAN (R 4.3.2)
 #>  BiocStyle     * 2.30.0  2023-10-24 [1] Bioconductor
-#>  bookdown        0.37    2023-12-01 [1] RSPM (R 4.3.0)
-#>  bslib           0.6.1   2023-11-28 [2] RSPM (R 4.3.0)
+#>  bookdown        0.38    2024-03-04 [1] RSPM (R 4.3.0)
+#>  bslib           0.7.0   2024-03-29 [2] RSPM (R 4.3.0)
 #>  cachem          1.0.8   2023-05-01 [2] RSPM (R 4.3.0)
 #>  cli             3.6.2   2023-12-11 [2] RSPM (R 4.3.0)
 #>  crayon          1.5.2   2022-09-29 [2] RSPM (R 4.3.0)
 #>  desc            1.4.3   2023-12-10 [2] RSPM (R 4.3.0)
-#>  digest          0.6.34  2024-01-11 [2] RSPM (R 4.3.0)
+#>  digest          0.6.35  2024-03-11 [2] RSPM (R 4.3.0)
 #>  dplyr         * 1.1.4   2023-11-17 [1] RSPM (R 4.3.0)
 #>  evaluate        0.23    2023-11-01 [2] RSPM (R 4.3.0)
 #>  fansi           1.0.6   2023-12-08 [2] RSPM (R 4.3.0)
@@ -690,7 +690,7 @@ 
    Reproducibility#>  fs              1.6.3   2023-07-20 [2] RSPM (R 4.3.0)
 #>  generics        0.1.3   2022-07-05 [1] RSPM (R 4.3.0)
 #>  glue            1.7.0   2024-01-09 [2] RSPM (R 4.3.0)
-#>  htmltools       0.5.7   2023-11-03 [2] RSPM (R 4.3.0)
+#>  htmltools       0.5.8   2024-03-25 [2] RSPM (R 4.3.0)
 #>  httr            1.4.7   2023-08-15 [2] RSPM (R 4.3.0)
 #>  jquerylib       0.1.4   2021-04-26 [2] RSPM (R 4.3.0)
 #>  jsonlite        1.8.8   2023-12-04 [2] RSPM (R 4.3.0)
@@ -706,25 +706,25 @@ 
    Reproducibility#>  plyr            1.8.9   2023-10-02 [1] RSPM (R 4.3.0)
 #>  purrr           1.0.2   2023-08-10 [2] RSPM (R 4.3.0)
 #>  R6              2.5.1   2021-08-19 [2] RSPM (R 4.3.0)
-#>  ragg            1.2.7   2023-12-11 [2] RSPM (R 4.3.0)
+#>  ragg            1.3.0   2024-03-13 [2] RSPM (R 4.3.0)
 #>  Rcpp            1.0.12  2024-01-09 [2] RSPM (R 4.3.0)
 #>  RefManageR    * 1.4.0   2022-09-30 [1] RSPM (R 4.3.0)
 #>  rlang           1.1.3   2024-01-10 [2] RSPM (R 4.3.0)
-#>  rmarkdown       2.25    2023-09-18 [2] RSPM (R 4.3.0)
-#>  sass            0.4.8   2023-12-06 [2] RSPM (R 4.3.0)
+#>  rmarkdown       2.26    2024-03-05 [2] RSPM (R 4.3.0)
+#>  sass            0.4.9   2024-03-15 [2] RSPM (R 4.3.0)
 #>  sessioninfo   * 1.2.2   2021-12-06 [2] RSPM (R 4.3.0)
-#>  slurmjobs     * 1.2.1   2024-02-29 [1] local
+#>  slurmjobs     * 1.2.2   2024-04-02 [1] local
 #>  stringi         1.8.3   2023-12-11 [2] RSPM (R 4.3.0)
 #>  stringr         1.5.1   2023-11-14 [2] RSPM (R 4.3.0)
-#>  systemfonts     1.0.5   2023-10-09 [2] RSPM (R 4.3.0)
+#>  systemfonts     1.0.6   2024-03-07 [2] RSPM (R 4.3.0)
 #>  textshaping     0.3.7   2023-10-09 [2] RSPM (R 4.3.0)
 #>  tibble          3.2.1   2023-03-20 [2] RSPM (R 4.3.0)
-#>  tidyselect      1.2.0   2022-10-10 [1] RSPM (R 4.3.0)
+#>  tidyselect      1.2.1   2024-03-11 [1] RSPM (R 4.3.0)
 #>  timechange      0.3.0   2024-01-18 [1] RSPM (R 4.3.0)
 #>  utf8            1.2.4   2023-10-22 [2] RSPM (R 4.3.0)
 #>  vctrs           0.6.5   2023-12-01 [2] RSPM (R 4.3.0)
 #>  withr           3.0.0   2024-01-16 [2] RSPM (R 4.3.0)
-#>  xfun            0.42    2024-02-08 [2] RSPM (R 4.3.0)
+#>  xfun            0.43    2024-03-25 [2] RSPM (R 4.3.0)
 #>  xml2            1.3.6   2023-12-04 [2] RSPM (R 4.3.0)
 #>  yaml            2.3.8   2023-12-11 [2] RSPM (R 4.3.0)
 #> 
@@ -740,19 +740,19 @@ 
    BibliographyBiocStyle
 (Oleś, 2023) with knitr (Xie,
 2023) and rmarkdown
-(Allaire, Xie, Dervieux et al., 2023) running behind the scenes.
    
+(Allaire, Xie, Dervieux et al., 2024) running behind the scenes.
    
 
    Citations made with RefManageR
 (McLean, 2017).
    
 
    
-[1]
+[1]
 J. Allaire, Y. Xie, C. Dervieux, et al. rmarkdown: Dynamic Documents
-for R. R package version 2.25. 2023. URL:
+for R. R package version 2.26. 2024. URL:
 https://github.com/rstudio/rmarkdown.
 
    
 
    
 [2]
 LieberInstitute. slurmjobs: Helper Functions for SLURM Jobs. https://github.com/LieberInstitute/slurmjobs/slurmjobs -
-R package version 1.2.1. 2024. DOI:
+R package version 1.2.2. 2024. DOI:
 10.18129/B9.bioc.slurmjobs.
 URL:
 http://www.bioconductor.org/packages/slurmjobs.
diff --git a/authors.html b/authors.html
index ccd6b74..347fdc1 100644
--- a/authors.html
+++ b/authors.html
@@ -17,7 +17,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
@@ -66,14 +66,14 @@ 
    Citation
    
 
     
    LieberInstitute (2024).
 slurmjobs: Helper Functions for SLURM Jobs.
-doi:10.18129/B9.bioc.slurmjobs, https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.2.1, http://www.bioconductor.org/packages/slurmjobs. 
+doi:10.18129/B9.bioc.slurmjobs, https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.2.2, http://www.bioconductor.org/packages/slurmjobs. 
 
    
     
    @Manual{,
   title = {slurmjobs: Helper Functions for SLURM Jobs},
   author = {{LieberInstitute}},
   year = {2024},
   url = {http://www.bioconductor.org/packages/slurmjobs},
-  note = {https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.2.1},
+  note = {https://github.com/LieberInstitute/slurmjobs/slurmjobs - R package version 1.2.2},
   doi = {10.18129/B9.bioc.slurmjobs},
 }
    
     
    LieberInstitute (2024).
diff --git a/index.html b/index.html
index a6b1681..986b7fa 100644
--- a/index.html
+++ b/index.html
@@ -37,7 +37,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/news/index.html b/news/index.html
index df8e4fa..9b0c23f 100644
--- a/news/index.html
+++ b/news/index.html
@@ -17,7 +17,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
@@ -50,6 +50,10 @@ 
    Changelog 
    
       Source: NEWS.md
     
 
+    
    
+
    slurmjobs 1.2.2
    
+
    • Use the HOSTNAME instead of SLURMD_NODENAME environment variable to determine host running a SLURM job
      • 
+
    
     
    
 
    slurmjobs 1.2.1
    
 
    BUG FIXES
    
diff --git a/pkgdown.yml b/pkgdown.yml
index 5490a89..fb4efd6 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -3,5 +3,5 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   slurmjobs: slurmjobs.html
-last_built: 2024-02-29T18:26Z
+last_built: 2024-04-02T20:30Z
 
diff --git a/reference/array_submit.html b/reference/array_submit.html
index 73e9fd0..9788a66 100644
--- a/reference/array_submit.html
+++ b/reference/array_submit.html
@@ -23,7 +23,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
    
 
@@ -136,9 +136,9 @@ 
    Examples
    
     create_shell = TRUE,
     task_num = 100
 )
-#> 2024-02-29 18:26:12.191638 creating the logs directory at:  logs
-#> 2024-02-29 18:26:12.193129 creating the shell file array_submit_example_2024-02-29.sh
-#> To submit the job use: sbatch array_submit_example_2024-02-29.sh
+#> 2024-04-02 20:30:29.270351 creating the logs directory at:  logs
+#> 2024-04-02 20:30:29.271871 creating the shell file array_submit_example_2024-04-02.sh
+#> To submit the job use: sbatch array_submit_example_2024-04-02.sh
 
 ## Now we can submit the job for a set of task IDs (or omit 'task_ids'
 ## to automatically grab those same failed task IDs)
diff --git a/reference/array_submit_example_2024-04-02.sh b/reference/array_submit_example_2024-04-02.sh
new file mode 100644
index 0000000..3d16224
--- /dev/null
+++ b/reference/array_submit_example_2024-04-02.sh
@@ -0,0 +1,37 @@
+#!/bin/bash
+#SBATCH -p shared
+#SBATCH --mem=10G
+#SBATCH --job-name=array_submit_example_2024-04-02
+#SBATCH -c 1
+#SBATCH -t 1-00:00:00
+#SBATCH -o logs/array_submit_example_2024-04-02.%a.txt
+#SBATCH -e logs/array_submit_example_2024-04-02.%a.txt
+#SBATCH --mail-type=ALL
+#SBATCH --array=1-100%20
+
+set -e
+
+echo "**** Job starts ****"
+date
+
+echo "**** JHPCE info ****"
+echo "User: ${USER}"
+echo "Job id: ${SLURM_JOB_ID}"
+echo "Job name: ${SLURM_JOB_NAME}"
+echo "Node name: ${HOSTNAME}"
+echo "Task id: ${SLURM_ARRAY_TASK_ID}"
+
+## Load the R module
+module load conda_R/4.3
+
+## List current modules for reproducibility
+module list
+
+## Edit with your job command
+Rscript -e "options(width = 120); sessioninfo::session_info()"
+
+echo "**** Job ends ****"
+date
+
+## This script was made using slurmjobs version 1.2.2
+## available from http://research.libd.org/slurmjobs/
diff --git a/reference/get_list_indexing.html b/reference/get_list_indexing.html
index 215291c..9b997b2 100644
--- a/reference/get_list_indexing.html
+++ b/reference/get_list_indexing.html
@@ -22,7 +22,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/get_short_flags.html b/reference/get_short_flags.html
index 9ee8a68..98b067d 100644
--- a/reference/get_short_flags.html
+++ b/reference/get_short_flags.html
@@ -20,7 +20,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/index.html b/reference/index.html
index 93926fd..b0754bf 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -17,7 +17,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/job_info.html b/reference/job_info.html
index a4d78c8..7134b96 100644
--- a/reference/job_info.html
+++ b/reference/job_info.html
@@ -19,7 +19,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/job_info_df.html b/reference/job_info_df.html
index 4d2ba2c..10972d5 100644
--- a/reference/job_info_df.html
+++ b/reference/job_info_df.html
@@ -18,7 +18,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/job_loop.html b/reference/job_loop.html
index 553b0a7..0c0ceb1 100644
--- a/reference/job_loop.html
+++ b/reference/job_loop.html
@@ -18,7 +18,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/job_report.html b/reference/job_report.html
index a175d2c..df1daf1 100644
--- a/reference/job_report.html
+++ b/reference/job_report.html
@@ -23,7 +23,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/job_single.html b/reference/job_single.html
index 091c446..4b04e77 100644
--- a/reference/job_single.html
+++ b/reference/job_single.html
@@ -20,7 +20,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
@@ -190,7 +190,7 @@ 
    Examples
    
 #> echo "User: ${USER}"
 #> echo "Job id: ${SLURM_JOB_ID}"
 #> echo "Job name: ${SLURM_JOB_NAME}"
-#> echo "Node name: ${SLURMD_NODENAME}"
+#> echo "Node name: ${HOSTNAME}"
 #> echo "Task id: ${SLURM_ARRAY_TASK_ID}"
 #> 
 #> ## Load the R module
@@ -205,7 +205,7 @@ 
    Examples
    
 #> echo "**** Job ends ****"
 #> date
 #> 
-#> ## This script was made using slurmjobs version 1.2.1
+#> ## This script was made using slurmjobs version 1.2.2
 #> ## available from http://research.libd.org/slurmjobs/
 #> 
 job_single("~/jhpce_job.sh", create_logdir = FALSE)
@@ -228,7 +228,7 @@ 
    Examples
    
 #> echo "User: ${USER}"
 #> echo "Job id: ${SLURM_JOB_ID}"
 #> echo "Job name: ${SLURM_JOB_NAME}"
-#> echo "Node name: ${SLURMD_NODENAME}"
+#> echo "Node name: ${HOSTNAME}"
 #> echo "Task id: ${SLURM_ARRAY_TASK_ID}"
 #> 
 #> ## Load the R module
@@ -243,7 +243,7 @@ 
    Examples
    
 #> echo "**** Job ends ****"
 #> date
 #> 
-#> ## This script was made using slurmjobs version 1.2.1
+#> ## This script was made using slurmjobs version 1.2.2
 #> ## available from http://research.libd.org/slurmjobs/
 #> 
 
@@ -271,7 +271,7 @@ 
    Examples
    
 #> echo "User: ${USER}"
 #> echo "Job id: ${SLURM_JOB_ID}"
 #> echo "Job name: ${SLURM_JOB_NAME}"
-#> echo "Node name: ${SLURMD_NODENAME}"
+#> echo "Node name: ${HOSTNAME}"
 #> echo "Task id: ${SLURM_ARRAY_TASK_ID}"
 #> 
 #> ## Load the R module
@@ -286,7 +286,7 @@ 
    Examples
    
 #> echo "**** Job ends ****"
 #> date
 #> 
-#> ## This script was made using slurmjobs version 1.2.1
+#> ## This script was made using slurmjobs version 1.2.2
 #> ## available from http://research.libd.org/slurmjobs/
 #> 
 
@@ -312,7 +312,7 @@ 
    Examples
    
 #> echo "User: ${USER}"
 #> echo "Job id: ${SLURM_JOB_ID}"
 #> echo "Job name: ${SLURM_JOB_NAME}"
-#> echo "Node name: ${SLURMD_NODENAME}"
+#> echo "Node name: ${HOSTNAME}"
 #> echo "Task id: ${SLURM_ARRAY_TASK_ID}"
 #> 
 #> ## Load the R module
@@ -327,7 +327,7 @@ 
    Examples
    
 #> echo "**** Job ends ****"
 #> date
 #> 
-#> ## This script was made using slurmjobs version 1.2.1
+#> ## This script was made using slurmjobs version 1.2.2
 #> ## available from http://research.libd.org/slurmjobs/
 #> 
 
diff --git a/reference/parse_file_or_name.html b/reference/parse_file_or_name.html
index 937ce95..3ea554e 100644
--- a/reference/parse_file_or_name.html
+++ b/reference/parse_file_or_name.html
@@ -20,7 +20,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/parse_slurm_time.html b/reference/parse_slurm_time.html
index ed4796e..dcebc85 100644
--- a/reference/parse_slurm_time.html
+++ b/reference/parse_slurm_time.html
@@ -18,7 +18,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/partition_df.html b/reference/partition_df.html
index 5cad8fc..b8ec439 100644
--- a/reference/partition_df.html
+++ b/reference/partition_df.html
@@ -18,7 +18,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/partition_info.html b/reference/partition_info.html
index 7d121e7..4c4ab28 100644
--- a/reference/partition_info.html
+++ b/reference/partition_info.html
@@ -19,7 +19,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2
       
     
 
diff --git a/reference/vector_as_code.html b/reference/vector_as_code.html
index 994ab0d..d248550 100644
--- a/reference/vector_as_code.html
+++ b/reference/vector_as_code.html
@@ -18,7 +18,7 @@
       
       
         slurmjobs
-        1.2.1
+        1.2.2