diff --git a/R/getDegTx.R b/R/getDegTx.R index 38d42fc..ae357f9 100644 --- a/R/getDegTx.R +++ b/R/getDegTx.R @@ -33,7 +33,7 @@ #' @examples #' getDegTx(covComb_tx_deg) #' stopifnot(mean(rowMeans(assays(covComb_tx_deg)$tpm)) > 1) -getDegTx <- function(rse_tx, type = c("cell_component", "standard", "top1500"), sig_transcripts = select_transcripts(type), assayname = "tpm", is_gencode = TRUE) { +getDegTx <- function(rse_tx, type = c("cell_component", "standard", "top1500"), sig_transcripts = select_transcripts(type), assayname = "tpm") { type = arg_match(type)