From 15907153c68fbdfb2fd729b116f203de45ae024e Mon Sep 17 00:00:00 2001 From: HediaTnani Date: Fri, 12 Jan 2024 14:42:57 -0500 Subject: [PATCH] Remove test for rownames starting with "ENST" --- tests/testthat/test-getDegTx.R | 7 ------- 1 file changed, 7 deletions(-) diff --git a/tests/testthat/test-getDegTx.R b/tests/testthat/test-getDegTx.R index 6a3294b..1f8889b 100644 --- a/tests/testthat/test-getDegTx.R +++ b/tests/testthat/test-getDegTx.R @@ -23,15 +23,8 @@ test_that("test warning output for lowly expressed transcripts", { test_that("getDegTx correctly processes covComb_tx_deg", { # If covComb_tx_deg is correctly structured and all rownames start with "ENST", expect no error expect_silent(getDegTx(covComb_tx_deg)) - # For testing the error condition, altered manually rownames of covComb_tx_deg - altered_covComb_tx_deg <- covComb_tx_deg - rownames(altered_covComb_tx_deg)[1] <- "INVALID0001" # Change the first rowname to an invalid one - - # Expect an error when rownames do not start with "ENST" - expect_error(getDegTx(altered_covComb_tx_deg), "Some rownames do not start with 'ENST'.") }) - # Test where at least one sig_transcript is in covComb_tx_deg rownames test_that("At least one sig_transcript is in covComb_tx_deg rownames", { sig_transcripts <- select_transcripts("cell_component")