From c872bf9a7c752bee31a0460836e0aa755daa1ed0 Mon Sep 17 00:00:00 2001 From: Leonardo Collado Torres Date: Mon, 9 Aug 2021 20:16:19 -0400 Subject: [PATCH] match biocthis 1.3.7 after noticing https://github.com/ComunidadBioInfo/cdsb2021_scRNAseq/commit/7447618a7731d9ba13f358aceda926b195706c20 --- .github/workflows/check-bioc.yml | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 4ffc200..40c11ec 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -170,7 +170,12 @@ jobs: ## Alternatively use https://storage.googleapis.com/bioconductor_docker/packages/ ## though based on https://bit.ly/bioc2021-package-binaries ## the Azure link will be the main one going forward. - gha_repos <- if(.Platform$OS.type == "unix") c("AnVIL" = "https://bioconductordocker.blob.core.windows.net/packages/3.14/bioc", BiocManager::repositories()) else BiocManager::repositories() + gha_repos <- if( + .Platform$OS.type == "unix" && Sys.info()["sysname"] != "Darwin" + ) c( + "AnVIL" = "https://bioconductordocker.blob.core.windows.net/packages/3.14/bioc", + BiocManager::repositories() + ) else BiocManager::repositories() ## For running the checks message(paste('****', Sys.time(), 'installing rcmdcheck and BiocCheck ****'))