diff --git a/README.Rmd b/README.Rmd index a5ef814..99e856d 100644 --- a/README.Rmd +++ b/README.Rmd @@ -63,6 +63,7 @@ We provide the following interactive websites, organized by software labeled wit - [Visium_SPG_AD_wholegenome](https://libd.shinyapps.io/Visium_SPG_AD_wholegenome): [`spatialLIBD`](https://doi.org/10.1186/s12864-022-08601-w) website showing the spatially-resolved Visium-SPG data (n = 10 tissue sections from 3 AD donors and 1 age-matched control) with statistical results comparing the 7 different spot categories bearing Ab and pTau pathology within donors with AD. This version shows the whole genome gene expression data. - [Visium_SPG_AD_TGE](https://libd.shinyapps.io/Visium_SPG_AD_TGE): [`spatialLIBD`](https://doi.org/10.1186/s12864-022-08601-w) website that the same as the previous one, but with the targeted gene expression (TGE) panel data. - [Visium_SPG_AD_wholegenome_Abeta_microenv](https://libd.shinyapps.io/Visium_SPG_AD_wholegenome_Abeta_microenv): [`spatialLIBD`](https://doi.org/10.1186/s12864-022-08601-w) website similar to `Visium_SPG_AD_wholegenome`, but with the `Ab` and `next_Ab` pathologies collapsed into a single one `Ab_env` for studying the Abeta micro environment. + - [Visium_SPG_AD_wholegenome_Abeta_and_pTau_microenv](https://libd.shinyapps.io/Visium_SPG_AD_wholegenome_Abeta_and_pTau_microenv/): [`spatialLIBD`](https://doi.org/10.1186/s12864-022-08601-w) website similar to `Visium_SPG_AD_wholegenome_Abeta_microenv`, but after also combining `pTau` and `next_pTau` into `pTau_env` as well as `both` and `next_both` into `both_env`, thus resulting in only 4 categories: `none`, `Ab_env`, `pTau_env`, and `both_env`. * 👀 `iSEE` - [Visium_SPG_AD_pseudobulk_AD_pathology_wholegenome](https://libd.shinyapps.io/Visium_SPG_AD_pseudobulk_AD_pathology_wholegenome): [`iSEE`](https://doi.org/10.12688%2Ff1000research.14966.1) website showing the pseudo-bulked spatial data of the 7 different pathological categories. * 🔍 `samui` diff --git a/README.md b/README.md index d2c7fea..e1b41d5 100644 --- a/README.md +++ b/README.md @@ -124,6 +124,12 @@ labeled with emojis: similar to `Visium_SPG_AD_wholegenome`, but with the `Ab` and `next_Ab` pathologies collapsed into a single one `Ab_env` for studying the Abeta micro environment. + - [Visium_SPG_AD_wholegenome_Abeta_and_pTau_microenv](https://libd.shinyapps.io/Visium_SPG_AD_wholegenome_Abeta_and_pTau_microenv/): + [`spatialLIBD`](https://doi.org/10.1186/s12864-022-08601-w) website + similar to `Visium_SPG_AD_wholegenome_Abeta_microenv`, but after + also combining `pTau` and `next_pTau` into `pTau_env` as well as + `both` and `next_both` into `both_env`, thus resulting in only 4 + categories: `none`, `Ab_env`, `pTau_env`, and `both_env`. - 👀 `iSEE` - [Visium_SPG_AD_pseudobulk_AD_pathology_wholegenome](https://libd.shinyapps.io/Visium_SPG_AD_pseudobulk_AD_pathology_wholegenome): [`iSEE`](https://doi.org/10.12688%2Ff1000research.14966.1) website