DESCRIPTION

Package: treeCentrality
Type: Package
Title: Computation of Network Science Statistics on Trees in Linear Time
Version: 0.1.0
Authors@R: c(
    person("Leonid", "Chindelevitch", email = "leonid@sfu.ca", role = c("aut", "cre")),
    person("Caroline", "Colijn", email = "c.colijn@imperial.ac.uk", role = "aut"),
    person("Art", "Poon", email = "apoon42@uwo.ca", role = "aut"),
    person("Maryam", "Hayati", email = "mhayati@sfu.ca", role = "aut"))
Description: The treeCentrality package is used for computing network science statistics on 
  (rooted or unrooted) phylogenetic trees in linear time and space. The statistics include 
  diameter, mean path length, degree assortativity and three node-based centrality values: 
  betweenness centrality, closeness centrality, and eigenvector centrality. These 
  statistics, useful for distinguishing evolutionary scenarios, are computed in time and 
  space linear in the tree size, and can take branch length into account. In addition, 
  this package can compute the spectra of the adjacency, Laplacian, and distance matrices, 
  although this computation may be cubic in the tree size. The package can also compute a 
  number of classical topology statistics, such as the Colless and Sackin indices, numbers 
  of small configurations such as cherries, the heights of tree nodes, and “staircaseness” 
  statistics. The methods are described in “Network science inspires novel tree shape 
  statistics”.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 3.3.2)
Imports:
    ape (>= 4.1),
    igraph (>= 1.0.1),
    rARPACK (>= 0.11.0)
Suggests:
    apTreeshape (>= 1.4.5),
    phyloTop (>= 2.0.1),
    phytools (>= 0.6.0),
    RPANDA (>= 1.3),
    testthat (>= 1.0.2)
RoxygenNote: 6.1.1
URL: http://github.com/Leonardini/treeCentrality
BugReports: http://github.com/Leonardini/treeCentrality/issues