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Dockerfile
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FROM python:3.8-buster
# set author
MAINTAINER Lain Pavot <[email protected]>
# set encoding
ENV LC_ALL en_US.UTF-8
ENV LANG en_US.UTF-8
ENV R_BASE_VERSION 4.0.3
ENV PLANEMO_VENV_LOCATION /planemo-venv
ENV CONDA /tmp/conda
RUN \
apt-get update \
&& apt-get install -y --no-install-recommends \
ed \
less \
locales \
vim-tiny \
wget \
ca-certificates \
fonts-texgyre \
&& echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
&& locale-gen en_US.utf8 \
&& /usr/sbin/update-locale LANG=en_US.UTF-8 \
&& echo "deb http://http.debian.net/debian buster main" > /etc/apt/sources.list.d/debian-unstable.list \
&& echo 'APT::Default-Release "buster";' > /etc/apt/apt.conf.d/default \
&& echo 'APT::Install-Recommends "false";' > /etc/apt/apt.conf.d/90local-no-recommends \
&& apt-get update \
&& apt-get upgrade -y \
&& apt-get install -y --no-install-recommends \
git \
littler \
libhdf5-dev \
r-cran-littler \
r-base \
r-base-dev \
r-recommended \
python-virtualenv \
&& pip install virtualenv \
&& python -m virtualenv "$PLANEMO_VENV_LOCATION" \
&& . "$PLANEMO_VENV_LOCATION"/bin/activate \
&& pip install --upgrade pip setuptools \
&& pip install planemo numpy \
&& planemo conda_init --conda_prefix "$CONDA" \
&& apt-get clean autoclean \
&& apt-get autoremove --yes \
&& rm -rf /var/lib/{apt,dpkg,cache,log}/ \
&& rm -rf /usr/bin/X11 \
&& rm -rf /tmp/* ;
CMD []