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Makefile-main
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#############################################################################
# Makefile for building: libgmml.so.1.0.0
# Project: gmml
# Template: lib
#############################################################################
####### Compiler, tools and options
CC = gcc
CXX = g++
CFLAGS = -m64 -pipe -O3 -Wall -W -D_REENTRANT -fPIC
CXXFLAGS = -m64 -pipe -O3 -Wall -W -D_REENTRANT -fPIC
INCPATH = -I. -Iincludes -Iincludes/GeometryTopology -Iincludes/Glycan -Iincludes/InputSet/CoordinateFileSpace -Iincludes/InputSet/PdbFileSpace -Iincludes/InputSet/PdbqtFileSpace -Iincludes/InputSet/TopologyFileSpace -Iincludes/MolecularModeling -Iincludes/ParameterSet/PrepFileSpace -Iincludes/ParameterSet/LibraryFileSpace -Iincludes/ParameterSet/ParameterFileSpace -Iinclude/InpuSet/CondensedSequenceSpace -Iincludes/GeometryTopology/InternalCoordinate -Iincludes/Resolver/PdbPreprocessor -I.
LINK = g++
LFLAGS = -m64 -Wl,-O3 -shared -Wl,-soname,libgmml.so.1
LIBS = $(SUBLIBS) -L/usr/lib/x86_64-linux-gnu -lpthread
AR = ar cqs
RANLIB =
TAR = tar -cf
COMPRESS = gzip -9f
COPY = cp -f
SED = sed
COPY_FILE = $(COPY)
COPY_DIR = $(COPY) -r
STRIP = strip
INSTALL_FILE = install -m 644 -p
INSTALL_DIR = $(COPY_DIR)
INSTALL_PROGRAM = install -m 755 -p
DEL_FILE = rm -f
SYMLINK = ln -f -s
DEL_DIR = rmdir
MOVE = mv -f
CHK_DIR_EXISTS= test -d
MKDIR = mkdir -p
####### Output directory
OBJECTS_DIR = build/
####### Files
SOURCES = src/GeometryTopology/cell.cc \
src/GeometryTopology/coordinate.cc \
src/GeometryTopology/grid.cc \
src/GeometryTopology/plane.cc \
src/MolecularModeling/assembly.cc \
src/MolecularModeling/atom.cc \
src/MolecularModeling/atomnode.cc \
src/MolecularModeling/dockingatom.cc \
src/MolecularModeling/element.cc \
src/MolecularModeling/moleculardynamicatom.cc \
src/MolecularModeling/quantommechanicatom.cc \
src/MolecularModeling/residue.cc \
src/GeometryTopology/InternalCoordinate/angle.cc \
src/GeometryTopology/InternalCoordinate/dihedral.cc \
src/GeometryTopology/InternalCoordinate/distance.cc \
src/InputSet/CondensedSequenceSpace/condensedsequence.cc \
src/InputSet/CondensedSequenceSpace/condensedsequenceamberprepresidue.cc \
src/InputSet/CondensedSequenceSpace/condensedsequenceprocessingexception.cc \
src/InputSet/CondensedSequenceSpace/condensedsequenceresidue.cc \
src/InputSet/CoordinateFileSpace/coordinatefile.cc \
src/InputSet/CoordinateFileSpace/coordinatefileprocessingexception.cc \
src/InputSet/PdbFileSpace/pdbatom.cc \
src/InputSet/PdbFileSpace/pdbatomcard.cc \
src/InputSet/PdbFileSpace/pdbcompoundcard.cc \
src/InputSet/PdbFileSpace/pdbcompoundspecification.cc \
src/InputSet/PdbFileSpace/pdbconnectcard.cc \
src/InputSet/PdbFileSpace/pdbcrystallographiccard.cc \
src/InputSet/PdbFileSpace/pdbdisulfidebondcard.cc \
src/InputSet/PdbFileSpace/pdbdisulfideresidue.cc \
src/InputSet/PdbFileSpace/pdbdisulfideresiduebond.cc \
src/InputSet/PdbFileSpace/pdbfile.cc \
src/InputSet/PdbFileSpace/pdbfileprocessingexception.cc \
src/InputSet/PdbFileSpace/pdbformula.cc \
src/InputSet/PdbFileSpace/pdbformulacard.cc \
src/InputSet/PdbFileSpace/pdbheadercard.cc \
src/InputSet/PdbFileSpace/pdbhelix.cc \
src/InputSet/PdbFileSpace/pdbhelixcard.cc \
src/InputSet/PdbFileSpace/pdbhelixresidue.cc \
src/InputSet/PdbFileSpace/pdbheterogen.cc \
src/InputSet/PdbFileSpace/pdbheterogenatomcard.cc \
src/InputSet/PdbFileSpace/pdbheterogencard.cc \
src/InputSet/PdbFileSpace/pdbheterogenname.cc \
src/InputSet/PdbFileSpace/pdbheterogennamecard.cc \
src/InputSet/PdbFileSpace/pdbheterogensynonym.cc \
src/InputSet/PdbFileSpace/pdbheterogensynonymcard.cc \
src/InputSet/PdbFileSpace/pdblink.cc \
src/InputSet/PdbFileSpace/pdblinkcard.cc \
src/InputSet/PdbFileSpace/pdblinkresidue.cc \
src/InputSet/PdbFileSpace/pdbmatrixn.cc \
src/InputSet/PdbFileSpace/pdbmatrixncard.cc \
src/InputSet/PdbFileSpace/pdbmodel.cc \
src/InputSet/PdbFileSpace/pdbmodelcard.cc \
src/InputSet/PdbFileSpace/pdbmodelresidueset.cc \
src/InputSet/PdbFileSpace/pdbmodeltypecard.cc \
src/InputSet/PdbFileSpace/pdbnummodelcard.cc \
src/InputSet/PdbFileSpace/pdboriginxn.cc \
src/InputSet/PdbFileSpace/pdboriginxncard.cc \
src/InputSet/PdbFileSpace/pdbresidue.cc \
src/InputSet/PdbFileSpace/pdbresiduemodification.cc \
src/InputSet/PdbFileSpace/pdbresiduemodificationcard.cc \
src/InputSet/PdbFileSpace/pdbresiduesequence.cc \
src/InputSet/PdbFileSpace/pdbresiduesequencecard.cc \
src/InputSet/PdbFileSpace/pdbscalen.cc \
src/InputSet/PdbFileSpace/pdbscalencard.cc \
src/InputSet/PdbFileSpace/pdbsheet.cc \
src/InputSet/PdbFileSpace/pdbsheetcard.cc \
src/InputSet/PdbFileSpace/pdbsheetstrand.cc \
src/InputSet/PdbFileSpace/pdbsheetstrandresidue.cc \
src/InputSet/PdbFileSpace/pdbsite.cc \
src/InputSet/PdbFileSpace/pdbsitecard.cc \
src/InputSet/PdbFileSpace/pdbsiteresidue.cc \
src/InputSet/PdbFileSpace/pdbtitlecard.cc \
src/InputSet/PdbqtFileSpace/pdbqtatom.cc \
src/InputSet/PdbqtFileSpace/pdbqtatomcard.cc \
src/InputSet/PdbqtFileSpace/pdbqtbranchcard.cc \
src/InputSet/PdbqtFileSpace/pdbqtcompoundcard.cc \
src/InputSet/PdbqtFileSpace/pdbqtfile.cc \
src/InputSet/PdbqtFileSpace/pdbqtfileprocessingexception.cc \
src/InputSet/PdbqtFileSpace/pdbqtmodel.cc \
src/InputSet/PdbqtFileSpace/pdbqtmodelcard.cc \
src/InputSet/PdbqtFileSpace/pdbqtmodelresidueset.cc \
src/InputSet/PdbqtFileSpace/pdbqtremarkcard.cc \
src/InputSet/PdbqtFileSpace/pdbqtrootcard.cc \
src/InputSet/PdbqtFileSpace/pdbqttorsionaldofcard.cc \
src/InputSet/TopologyFileSpace/topologyangle.cc \
src/InputSet/TopologyFileSpace/topologyangletype.cc \
src/InputSet/TopologyFileSpace/topologyassembly.cc \
src/InputSet/TopologyFileSpace/topologyatom.cc \
src/InputSet/TopologyFileSpace/topologyatompair.cc \
src/InputSet/TopologyFileSpace/topologybond.cc \
src/InputSet/TopologyFileSpace/topologybondtype.cc \
src/InputSet/TopologyFileSpace/topologydihedral.cc \
src/InputSet/TopologyFileSpace/topologydihedraltype.cc \
src/InputSet/TopologyFileSpace/topologyfile.cc \
src/InputSet/TopologyFileSpace/topologyfileprocessingexception.cc \
src/InputSet/TopologyFileSpace/topologyresidue.cc \
src/ParameterSet/LibraryFileSpace/libraryfile.cc \
src/ParameterSet/LibraryFileSpace/libraryfileatom.cc \
src/ParameterSet/LibraryFileSpace/libraryfileprocessingexception.cc \
src/ParameterSet/LibraryFileSpace/libraryfileresidue.cc \
src/ParameterSet/ParameterFileSpace/parameterfile.cc \
src/ParameterSet/ParameterFileSpace/parameterfileangle.cc \
src/ParameterSet/ParameterFileSpace/parameterfileatom.cc \
src/ParameterSet/ParameterFileSpace/parameterfilebond.cc \
src/ParameterSet/ParameterFileSpace/parameterfiledihedral.cc \
src/ParameterSet/ParameterFileSpace/parameterfiledihedralterm.cc \
src/ParameterSet/ParameterFileSpace/parameterfileprocessingexception.cc \
src/ParameterSet/PrepFileSpace/prepfile.cc \
src/ParameterSet/PrepFileSpace/prepfileatom.cc \
src/ParameterSet/PrepFileSpace/prepfileprocessingexception.cc \
src/ParameterSet/PrepFileSpace/prepfileresidue.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessor.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessoralternateresidue.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessorchaintermination.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessordisulfidebond.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessorhistidinemapping.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessormissingresidue.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessorreplacedhydrogen.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessorresidueinfo.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessorunrecognizedheavyatom.cc \
src/Resolver/PdbPreprocessor/pdbpreprocessorunrecognizedresidue.cc
OBJECTS = build/cell.o \
build/coordinate.o \
build/grid.o \
build/plane.o \
build/assembly.o \
build/atom.o \
build/atomnode.o \
build/dockingatom.o \
build/element.o \
build/moleculardynamicatom.o \
build/quantommechanicatom.o \
build/residue.o \
build/angle.o \
build/dihedral.o \
build/distance.o \
build/condensedsequence.o \
build/condensedsequenceamberprepresidue.o \
build/condensedsequenceprocessingexception.o \
build/condensedsequenceresidue.o \
build/coordinatefile.o \
build/coordinatefileprocessingexception.o \
build/pdbatom.o \
build/pdbatomcard.o \
build/pdbcompoundcard.o \
build/pdbcompoundspecification.o \
build/pdbconnectcard.o \
build/pdbcrystallographiccard.o \
build/pdbdisulfidebondcard.o \
build/pdbdisulfideresidue.o \
build/pdbdisulfideresiduebond.o \
build/pdbfile.o \
build/pdbfileprocessingexception.o \
build/pdbformula.o \
build/pdbformulacard.o \
build/pdbheadercard.o \
build/pdbhelix.o \
build/pdbhelixcard.o \
build/pdbhelixresidue.o \
build/pdbheterogen.o \
build/pdbheterogenatomcard.o \
build/pdbheterogencard.o \
build/pdbheterogenname.o \
build/pdbheterogennamecard.o \
build/pdbheterogensynonym.o \
build/pdbheterogensynonymcard.o \
build/pdblink.o \
build/pdblinkcard.o \
build/pdblinkresidue.o \
build/pdbmatrixn.o \
build/pdbmatrixncard.o \
build/pdbmodel.o \
build/pdbmodelcard.o \
build/pdbmodelresidueset.o \
build/pdbmodeltypecard.o \
build/pdbnummodelcard.o \
build/pdboriginxn.o \
build/pdboriginxncard.o \
build/pdbresidue.o \
build/pdbresiduemodification.o \
build/pdbresiduemodificationcard.o \
build/pdbresiduesequence.o \
build/pdbresiduesequencecard.o \
build/pdbscalen.o \
build/pdbscalencard.o \
build/pdbsheet.o \
build/pdbsheetcard.o \
build/pdbsheetstrand.o \
build/pdbsheetstrandresidue.o \
build/pdbsite.o \
build/pdbsitecard.o \
build/pdbsiteresidue.o \
build/pdbtitlecard.o \
build/pdbqtatom.o \
build/pdbqtatomcard.o \
build/pdbqtbranchcard.o \
build/pdbqtcompoundcard.o \
build/pdbqtfile.o \
build/pdbqtfileprocessingexception.o \
build/pdbqtmodel.o \
build/pdbqtmodelcard.o \
build/pdbqtmodelresidueset.o \
build/pdbqtremarkcard.o \
build/pdbqtrootcard.o \
build/pdbqttorsionaldofcard.o \
build/topologyangle.o \
build/topologyangletype.o \
build/topologyassembly.o \
build/topologyatom.o \
build/topologyatompair.o \
build/topologybond.o \
build/topologybondtype.o \
build/topologydihedral.o \
build/topologydihedraltype.o \
build/topologyfile.o \
build/topologyfileprocessingexception.o \
build/topologyresidue.o \
build/libraryfile.o \
build/libraryfileatom.o \
build/libraryfileprocessingexception.o \
build/libraryfileresidue.o \
build/parameterfile.o \
build/parameterfileangle.o \
build/parameterfileatom.o \
build/parameterfilebond.o \
build/parameterfiledihedral.o \
build/parameterfiledihedralterm.o \
build/parameterfileprocessingexception.o \
build/prepfile.o \
build/prepfileatom.o \
build/prepfileprocessingexception.o \
build/prepfileresidue.o \
build/pdbpreprocessor.o \
build/pdbpreprocessoralternateresidue.o \
build/pdbpreprocessorchaintermination.o \
build/pdbpreprocessordisulfidebond.o \
build/pdbpreprocessorhistidinemapping.o \
build/pdbpreprocessormissingresidue.o \
build/pdbpreprocessorreplacedhydrogen.o \
build/pdbpreprocessorresidueinfo.o \
build/pdbpreprocessorunrecognizedheavyatom.o \
build/pdbpreprocessorunrecognizedresidue.o
DESTDIR = bin/
TARGET = libgmml.so.1.0.0
TARGETA = bin/libgmml.a
TARGETD = libgmml.so.1.0.0
TARGET0 = libgmml.so
TARGET1 = libgmml.so.1
TARGET2 = libgmml.so.1.0
first: all
####### Implicit rules
.SUFFIXES: .o .c .cpp .cc .cxx .C
.cpp.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.cc.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.cxx.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.C.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.c.o:
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
####### Build rules
all: Makefile-main bin/$(TARGET)
bin/$(TARGET): $(OBJECTS) $(SUBLIBS) $(OBJCOMP)
@$(CHK_DIR_EXISTS) bin/ || $(MKDIR) bin/
-$(DEL_FILE) $(TARGET) $(TARGET0) $(TARGET1) $(TARGET2)
$(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(LIBS) $(OBJCOMP)
-ln -s $(TARGET) $(TARGET0)
-ln -s $(TARGET) $(TARGET1)
-ln -s $(TARGET) $(TARGET2)
-$(DEL_FILE) bin/$(TARGET)
-$(DEL_FILE) bin/$(TARGET0)
-$(DEL_FILE) bin/$(TARGET1)
-$(DEL_FILE) bin/$(TARGET2)
-$(MOVE) $(TARGET) $(TARGET0) $(TARGET1) $(TARGET2) bin/
staticlib: $(TARGETA)
$(TARGETA): $(OBJECTS) $(OBJCOMP)
-$(DEL_FILE) $(TARGETA)
$(AR) $(TARGETA) $(OBJECTS)
clean:compiler_clean
-$(DEL_FILE) $(OBJECTS)
-$(DEL_FILE) *~ core *.core
####### Sub-libraries
distclean: clean
-$(DEL_FILE) bin/$(TARGET)
-$(DEL_FILE) bin/$(TARGET0) bin/$(TARGET1) bin/$(TARGET2) $(TARGETA)
-$(DEL_FILE) Makefile
check: first
mocclean: compiler_moc_header_clean compiler_moc_source_clean
mocables: compiler_moc_header_make_all compiler_moc_source_make_all
compiler_moc_header_make_all:
compiler_moc_header_clean:
compiler_rcc_make_all:
compiler_rcc_clean:
compiler_image_collection_make_all:
compiler_image_collection_clean:
compiler_moc_source_make_all:
compiler_moc_source_clean:
compiler_uic_make_all:
compiler_uic_clean:
compiler_yacc_decl_make_all:
compiler_yacc_decl_clean:
compiler_yacc_impl_make_all:
compiler_yacc_impl_clean:
compiler_lex_make_all:
compiler_lex_clean:
compiler_clean:
####### Compile
build/cell.o: src/GeometryTopology/cell.cc includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/GeometryTopology/cell.hpp \
includes/GeometryTopology/grid.hpp \
includes/MolecularModeling/assembly.hpp \
includes/GeometryTopology/plane.hpp \
includes/Glycan/chemicalcode.hpp \
includes/MolecularModeling/atom.hpp \
includes/MolecularModeling/moleculardynamicatom.hpp \
includes/MolecularModeling/quantommechanicatom.hpp \
includes/MolecularModeling/dockingatom.hpp \
includes/Glycan/monosaccharide.hpp \
includes/InputSet/PdbFileSpace/pdbfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtfile.hpp \
includes/InputSet/TopologyFileSpace/topologyfile.hpp \
includes/InputSet/CoordinateFileSpace/coordinatefile.hpp \
includes/ParameterSet/PrepFileSpace/prepfile.hpp \
includes/ParameterSet/PrepFileSpace/prepfileresidue.hpp \
includes/ParameterSet/PrepFileSpace/prepfileatom.hpp \
includes/ParameterSet/LibraryFileSpace/libraryfile.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelcard.hpp \
includes/InputSet/PdbFileSpace/pdbmodel.hpp \
includes/Glycan/oligosaccharide.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/cell.o src/GeometryTopology/cell.cc
build/coordinate.o: src/GeometryTopology/coordinate.cc includes/GeometryTopology/coordinate.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/coordinate.o src/GeometryTopology/coordinate.cc
build/grid.o: src/GeometryTopology/grid.cc includes/GeometryTopology/coordinate.hpp \
includes/GeometryTopology/cell.hpp \
includes/GeometryTopology/grid.hpp \
includes/MolecularModeling/assembly.hpp \
includes/GeometryTopology/plane.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp \
includes/Glycan/chemicalcode.hpp \
includes/MolecularModeling/atom.hpp \
includes/MolecularModeling/moleculardynamicatom.hpp \
includes/MolecularModeling/quantommechanicatom.hpp \
includes/MolecularModeling/dockingatom.hpp \
includes/Glycan/monosaccharide.hpp \
includes/InputSet/PdbFileSpace/pdbfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtfile.hpp \
includes/InputSet/TopologyFileSpace/topologyfile.hpp \
includes/InputSet/CoordinateFileSpace/coordinatefile.hpp \
includes/ParameterSet/PrepFileSpace/prepfile.hpp \
includes/ParameterSet/PrepFileSpace/prepfileresidue.hpp \
includes/ParameterSet/PrepFileSpace/prepfileatom.hpp \
includes/ParameterSet/LibraryFileSpace/libraryfile.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelcard.hpp \
includes/InputSet/PdbFileSpace/pdbmodel.hpp \
includes/Glycan/oligosaccharide.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/grid.o src/GeometryTopology/grid.cc
build/plane.o: src/GeometryTopology/plane.cc includes/GeometryTopology/plane.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/plane.o src/GeometryTopology/plane.cc
build/assembly.o: src/MolecularModeling/assembly.cc includes/MolecularModeling/assembly.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/GeometryTopology/plane.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp \
includes/Glycan/chemicalcode.hpp \
includes/MolecularModeling/atom.hpp \
includes/MolecularModeling/moleculardynamicatom.hpp \
includes/MolecularModeling/quantommechanicatom.hpp \
includes/MolecularModeling/dockingatom.hpp \
includes/Glycan/monosaccharide.hpp \
includes/InputSet/PdbFileSpace/pdbfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtfile.hpp \
includes/InputSet/TopologyFileSpace/topologyfile.hpp \
includes/InputSet/CoordinateFileSpace/coordinatefile.hpp \
includes/ParameterSet/PrepFileSpace/prepfile.hpp \
includes/ParameterSet/PrepFileSpace/prepfileresidue.hpp \
includes/ParameterSet/PrepFileSpace/prepfileatom.hpp \
includes/ParameterSet/LibraryFileSpace/libraryfile.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelcard.hpp \
includes/InputSet/PdbFileSpace/pdbmodel.hpp \
includes/Glycan/oligosaccharide.hpp \
includes/utils.hpp \
includes/MolecularModeling/residue.hpp \
includes/MolecularModeling/atomnode.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequence.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceresidue.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceamberprepresidue.hpp \
includes/InputSet/TopologyFileSpace/topologyassembly.hpp \
includes/InputSet/TopologyFileSpace/topologyresidue.hpp \
includes/InputSet/TopologyFileSpace/topologyatom.hpp \
includes/InputSet/TopologyFileSpace/topologybond.hpp \
includes/InputSet/TopologyFileSpace/topologybondtype.hpp \
includes/InputSet/TopologyFileSpace/topologyangle.hpp \
includes/InputSet/TopologyFileSpace/topologyangletype.hpp \
includes/InputSet/TopologyFileSpace/topologydihedral.hpp \
includes/InputSet/TopologyFileSpace/topologydihedraltype.hpp \
includes/InputSet/TopologyFileSpace/topologyatompair.hpp \
includes/InputSet/PdbFileSpace/pdbtitlecard.hpp \
includes/InputSet/PdbFileSpace/pdbatomcard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogenatomcard.hpp \
includes/InputSet/PdbFileSpace/pdbatom.hpp \
includes/InputSet/PdbFileSpace/pdbconnectcard.hpp \
includes/InputSet/PdbFileSpace/pdbfileprocessingexception.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtatom.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtmodel.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtmodelcard.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtatomcard.hpp \
includes/ParameterSet/LibraryFileSpace/libraryfileatom.hpp \
includes/ParameterSet/LibraryFileSpace/libraryfileresidue.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfilebond.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfileangle.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfiledihedral.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfiledihedralterm.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfileatom.hpp \
includes/GeometryTopology/grid.hpp \
includes/GeometryTopology/cell.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/assembly.o src/MolecularModeling/assembly.cc
build/atom.o: src/MolecularModeling/atom.cc includes/MolecularModeling/atom.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/MolecularModeling/moleculardynamicatom.hpp \
includes/MolecularModeling/quantommechanicatom.hpp \
includes/MolecularModeling/dockingatom.hpp \
includes/MolecularModeling/atomnode.hpp \
includes/MolecularModeling/residue.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/atom.o src/MolecularModeling/atom.cc
build/atomnode.o: src/MolecularModeling/atomnode.cc includes/MolecularModeling/atomnode.hpp \
includes/MolecularModeling/atom.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/MolecularModeling/moleculardynamicatom.hpp \
includes/MolecularModeling/quantommechanicatom.hpp \
includes/MolecularModeling/dockingatom.hpp \
includes/MolecularModeling/residue.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/atomnode.o src/MolecularModeling/atomnode.cc
build/dockingatom.o: src/MolecularModeling/dockingatom.cc includes/MolecularModeling/dockingatom.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/dockingatom.o src/MolecularModeling/dockingatom.cc
build/element.o: src/MolecularModeling/element.cc includes/MolecularModeling/element.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/element.o src/MolecularModeling/element.cc
build/moleculardynamicatom.o: src/MolecularModeling/moleculardynamicatom.cc includes/MolecularModeling/moleculardynamicatom.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/moleculardynamicatom.o src/MolecularModeling/moleculardynamicatom.cc
build/quantommechanicatom.o: src/MolecularModeling/quantommechanicatom.cc includes/MolecularModeling/quantommechanicatom.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/quantommechanicatom.o src/MolecularModeling/quantommechanicatom.cc
build/residue.o: src/MolecularModeling/residue.cc includes/MolecularModeling/residue.hpp \
includes/MolecularModeling/assembly.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/GeometryTopology/plane.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp \
includes/Glycan/chemicalcode.hpp \
includes/MolecularModeling/atom.hpp \
includes/MolecularModeling/moleculardynamicatom.hpp \
includes/MolecularModeling/quantommechanicatom.hpp \
includes/MolecularModeling/dockingatom.hpp \
includes/Glycan/monosaccharide.hpp \
includes/InputSet/PdbFileSpace/pdbfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtfile.hpp \
includes/InputSet/TopologyFileSpace/topologyfile.hpp \
includes/InputSet/CoordinateFileSpace/coordinatefile.hpp \
includes/ParameterSet/PrepFileSpace/prepfile.hpp \
includes/ParameterSet/PrepFileSpace/prepfileresidue.hpp \
includes/ParameterSet/PrepFileSpace/prepfileatom.hpp \
includes/ParameterSet/LibraryFileSpace/libraryfile.hpp \
includes/ParameterSet/ParameterFileSpace/parameterfile.hpp \
includes/InputSet/PdbqtFileSpace/pdbqtmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodelcard.hpp \
includes/InputSet/PdbFileSpace/pdbmodel.hpp \
includes/Glycan/oligosaccharide.hpp \
includes/utils.hpp \
includes/MolecularModeling/atomnode.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/residue.o src/MolecularModeling/residue.cc
build/angle.o: src/GeometryTopology/InternalCoordinate/angle.cc includes/GeometryTopology/InternalCoordinate/angle.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/angle.o src/GeometryTopology/InternalCoordinate/angle.cc
build/dihedral.o: src/GeometryTopology/InternalCoordinate/dihedral.cc includes/GeometryTopology/InternalCoordinate/dihedral.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/dihedral.o src/GeometryTopology/InternalCoordinate/dihedral.cc
build/distance.o: src/GeometryTopology/InternalCoordinate/distance.cc includes/GeometryTopology/InternalCoordinate/distance.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/distance.o src/GeometryTopology/InternalCoordinate/distance.cc
build/condensedsequence.o: src/InputSet/CondensedSequenceSpace/condensedsequence.cc includes/InputSet/CondensedSequenceSpace/condensedsequence.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceresidue.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceamberprepresidue.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceprocessingexception.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/condensedsequence.o src/InputSet/CondensedSequenceSpace/condensedsequence.cc
build/condensedsequenceamberprepresidue.o: src/InputSet/CondensedSequenceSpace/condensedsequenceamberprepresidue.cc includes/InputSet/CondensedSequenceSpace/condensedsequenceamberprepresidue.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceprocessingexception.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/condensedsequenceamberprepresidue.o src/InputSet/CondensedSequenceSpace/condensedsequenceamberprepresidue.cc
build/condensedsequenceprocessingexception.o: src/InputSet/CondensedSequenceSpace/condensedsequenceprocessingexception.cc includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceprocessingexception.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/condensedsequenceprocessingexception.o src/InputSet/CondensedSequenceSpace/condensedsequenceprocessingexception.cc
build/condensedsequenceresidue.o: src/InputSet/CondensedSequenceSpace/condensedsequenceresidue.cc includes/InputSet/CondensedSequenceSpace/condensedsequenceresidue.hpp \
includes/InputSet/CondensedSequenceSpace/condensedsequenceprocessingexception.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/condensedsequenceresidue.o src/InputSet/CondensedSequenceSpace/condensedsequenceresidue.cc
build/coordinatefile.o: src/InputSet/CoordinateFileSpace/coordinatefile.cc includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/InputSet/CoordinateFileSpace/coordinatefile.hpp \
includes/InputSet/CoordinateFileSpace/coordinatefileprocessingexception.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/coordinatefile.o src/InputSet/CoordinateFileSpace/coordinatefile.cc
build/coordinatefileprocessingexception.o: src/InputSet/CoordinateFileSpace/coordinatefileprocessingexception.cc includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp \
includes/InputSet/CoordinateFileSpace/coordinatefileprocessingexception.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/coordinatefileprocessingexception.o src/InputSet/CoordinateFileSpace/coordinatefileprocessingexception.cc
build/pdbatom.o: src/InputSet/PdbFileSpace/pdbatom.cc includes/InputSet/PdbFileSpace/pdbatom.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbatom.o src/InputSet/PdbFileSpace/pdbatom.cc
build/pdbatomcard.o: src/InputSet/PdbFileSpace/pdbatomcard.cc includes/InputSet/PdbFileSpace/pdbatomcard.hpp \
includes/InputSet/PdbFileSpace/pdbatom.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbatomcard.o src/InputSet/PdbFileSpace/pdbatomcard.cc
build/pdbcompoundcard.o: src/InputSet/PdbFileSpace/pdbcompoundcard.cc includes/InputSet/PdbFileSpace/pdbcompoundcard.hpp \
includes/InputSet/PdbFileSpace/pdbcompoundspecification.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbcompoundcard.o src/InputSet/PdbFileSpace/pdbcompoundcard.cc
build/pdbcompoundspecification.o: src/InputSet/PdbFileSpace/pdbcompoundspecification.cc includes/InputSet/PdbFileSpace/pdbcompoundspecification.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbcompoundspecification.o src/InputSet/PdbFileSpace/pdbcompoundspecification.cc
build/pdbconnectcard.o: src/InputSet/PdbFileSpace/pdbconnectcard.cc includes/InputSet/PdbFileSpace/pdbconnectcard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbconnectcard.o src/InputSet/PdbFileSpace/pdbconnectcard.cc
build/pdbcrystallographiccard.o: src/InputSet/PdbFileSpace/pdbcrystallographiccard.cc includes/InputSet/PdbFileSpace/pdbcrystallographiccard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbcrystallographiccard.o src/InputSet/PdbFileSpace/pdbcrystallographiccard.cc
build/pdbdisulfidebondcard.o: src/InputSet/PdbFileSpace/pdbdisulfidebondcard.cc includes/InputSet/PdbFileSpace/pdbdisulfidebondcard.hpp \
includes/InputSet/PdbFileSpace/pdbdisulfideresiduebond.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbdisulfidebondcard.o src/InputSet/PdbFileSpace/pdbdisulfidebondcard.cc
build/pdbdisulfideresidue.o: src/InputSet/PdbFileSpace/pdbdisulfideresidue.cc includes/InputSet/PdbFileSpace/pdbdisulfideresidue.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbdisulfideresidue.o src/InputSet/PdbFileSpace/pdbdisulfideresidue.cc
build/pdbdisulfideresiduebond.o: src/InputSet/PdbFileSpace/pdbdisulfideresiduebond.cc includes/InputSet/PdbFileSpace/pdbdisulfideresiduebond.hpp \
includes/InputSet/PdbFileSpace/pdbdisulfideresidue.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbdisulfideresiduebond.o src/InputSet/PdbFileSpace/pdbdisulfideresiduebond.cc
build/pdbfile.o: src/InputSet/PdbFileSpace/pdbfile.cc includes/InputSet/PdbFileSpace/pdbfile.hpp \
includes/InputSet/PdbFileSpace/pdbheadercard.hpp \
includes/InputSet/PdbFileSpace/pdbtitlecard.hpp \
includes/InputSet/PdbFileSpace/pdbcompoundcard.hpp \
includes/InputSet/PdbFileSpace/pdbcompoundspecification.hpp \
includes/InputSet/PdbFileSpace/pdbnummodelcard.hpp \
includes/InputSet/PdbFileSpace/pdbmodeltypecard.hpp \
includes/InputSet/PdbFileSpace/pdbresiduesequencecard.hpp \
includes/InputSet/PdbFileSpace/pdbresiduesequence.hpp \
includes/InputSet/PdbFileSpace/pdbresiduemodificationcard.hpp \
includes/InputSet/PdbFileSpace/pdbresiduemodification.hpp \
includes/InputSet/PdbFileSpace/pdbheterogencard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogen.hpp \
includes/InputSet/PdbFileSpace/pdbheterogennamecard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogenname.hpp \
includes/InputSet/PdbFileSpace/pdbheterogensynonymcard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogensynonym.hpp \
includes/InputSet/PdbFileSpace/pdbformulacard.hpp \
includes/InputSet/PdbFileSpace/pdbformula.hpp \
includes/InputSet/PdbFileSpace/pdbhelixcard.hpp \
includes/InputSet/PdbFileSpace/pdbhelix.hpp \
includes/InputSet/PdbFileSpace/pdbhelixresidue.hpp \
includes/InputSet/PdbFileSpace/pdbsheetcard.hpp \
includes/InputSet/PdbFileSpace/pdbsheet.hpp \
includes/InputSet/PdbFileSpace/pdbsheetstrand.hpp \
includes/InputSet/PdbFileSpace/pdbsheetstrandresidue.hpp \
includes/InputSet/PdbFileSpace/pdbdisulfidebondcard.hpp \
includes/InputSet/PdbFileSpace/pdbdisulfideresiduebond.hpp \
includes/InputSet/PdbFileSpace/pdbdisulfideresidue.hpp \
includes/InputSet/PdbFileSpace/pdblinkcard.hpp \
includes/InputSet/PdbFileSpace/pdblink.hpp \
includes/InputSet/PdbFileSpace/pdblinkresidue.hpp \
includes/InputSet/PdbFileSpace/pdbsitecard.hpp \
includes/InputSet/PdbFileSpace/pdbsite.hpp \
includes/InputSet/PdbFileSpace/pdbsiteresidue.hpp \
includes/InputSet/PdbFileSpace/pdbcrystallographiccard.hpp \
includes/InputSet/PdbFileSpace/pdboriginxncard.hpp \
includes/InputSet/PdbFileSpace/pdboriginxn.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/InputSet/PdbFileSpace/pdbscalencard.hpp \
includes/InputSet/PdbFileSpace/pdbscalen.hpp \
includes/InputSet/PdbFileSpace/pdbmatrixncard.hpp \
includes/InputSet/PdbFileSpace/pdbmatrixn.hpp \
includes/InputSet/PdbFileSpace/pdbmodelcard.hpp \
includes/InputSet/PdbFileSpace/pdbmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodel.hpp \
includes/InputSet/PdbFileSpace/pdbatom.hpp \
includes/InputSet/PdbFileSpace/pdbatomcard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogenatomcard.hpp \
includes/InputSet/PdbFileSpace/pdbconnectcard.hpp \
includes/InputSet/PdbFileSpace/pdbfileprocessingexception.hpp \
includes/InputSet/PdbFileSpace/pdbresidue.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbfile.o src/InputSet/PdbFileSpace/pdbfile.cc
build/pdbfileprocessingexception.o: src/InputSet/PdbFileSpace/pdbfileprocessingexception.cc includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp \
includes/InputSet/PdbFileSpace/pdbfileprocessingexception.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbfileprocessingexception.o src/InputSet/PdbFileSpace/pdbfileprocessingexception.cc
build/pdbformula.o: src/InputSet/PdbFileSpace/pdbformula.cc includes/InputSet/PdbFileSpace/pdbformula.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbformula.o src/InputSet/PdbFileSpace/pdbformula.cc
build/pdbformulacard.o: src/InputSet/PdbFileSpace/pdbformulacard.cc includes/InputSet/PdbFileSpace/pdbformulacard.hpp \
includes/InputSet/PdbFileSpace/pdbformula.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbformulacard.o src/InputSet/PdbFileSpace/pdbformulacard.cc
build/pdbheadercard.o: src/InputSet/PdbFileSpace/pdbheadercard.cc includes/InputSet/PdbFileSpace/pdbheadercard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheadercard.o src/InputSet/PdbFileSpace/pdbheadercard.cc
build/pdbhelix.o: src/InputSet/PdbFileSpace/pdbhelix.cc includes/InputSet/PdbFileSpace/pdbhelix.hpp \
includes/InputSet/PdbFileSpace/pdbhelixresidue.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbhelix.o src/InputSet/PdbFileSpace/pdbhelix.cc
build/pdbhelixcard.o: src/InputSet/PdbFileSpace/pdbhelixcard.cc includes/InputSet/PdbFileSpace/pdbhelixcard.hpp \
includes/InputSet/PdbFileSpace/pdbhelix.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbhelixcard.o src/InputSet/PdbFileSpace/pdbhelixcard.cc
build/pdbhelixresidue.o: src/InputSet/PdbFileSpace/pdbhelixresidue.cc includes/InputSet/PdbFileSpace/pdbhelixresidue.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbhelixresidue.o src/InputSet/PdbFileSpace/pdbhelixresidue.cc
build/pdbheterogen.o: src/InputSet/PdbFileSpace/pdbheterogen.cc includes/InputSet/PdbFileSpace/pdbheterogen.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheterogen.o src/InputSet/PdbFileSpace/pdbheterogen.cc
build/pdbheterogenatomcard.o: src/InputSet/PdbFileSpace/pdbheterogenatomcard.cc includes/InputSet/PdbFileSpace/pdbheterogenatomcard.hpp \
includes/InputSet/PdbFileSpace/pdbatom.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheterogenatomcard.o src/InputSet/PdbFileSpace/pdbheterogenatomcard.cc
build/pdbheterogencard.o: src/InputSet/PdbFileSpace/pdbheterogencard.cc includes/InputSet/PdbFileSpace/pdbheterogencard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogen.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheterogencard.o src/InputSet/PdbFileSpace/pdbheterogencard.cc
build/pdbheterogenname.o: src/InputSet/PdbFileSpace/pdbheterogenname.cc includes/InputSet/PdbFileSpace/pdbheterogenname.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheterogenname.o src/InputSet/PdbFileSpace/pdbheterogenname.cc
build/pdbheterogennamecard.o: src/InputSet/PdbFileSpace/pdbheterogennamecard.cc includes/InputSet/PdbFileSpace/pdbheterogennamecard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogenname.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheterogennamecard.o src/InputSet/PdbFileSpace/pdbheterogennamecard.cc
build/pdbheterogensynonym.o: src/InputSet/PdbFileSpace/pdbheterogensynonym.cc includes/InputSet/PdbFileSpace/pdbheterogensynonym.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheterogensynonym.o src/InputSet/PdbFileSpace/pdbheterogensynonym.cc
build/pdbheterogensynonymcard.o: src/InputSet/PdbFileSpace/pdbheterogensynonymcard.cc includes/InputSet/PdbFileSpace/pdbheterogensynonymcard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogensynonym.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbheterogensynonymcard.o src/InputSet/PdbFileSpace/pdbheterogensynonymcard.cc
build/pdblink.o: src/InputSet/PdbFileSpace/pdblink.cc includes/InputSet/PdbFileSpace/pdblink.hpp \
includes/InputSet/PdbFileSpace/pdblinkresidue.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdblink.o src/InputSet/PdbFileSpace/pdblink.cc
build/pdblinkcard.o: src/InputSet/PdbFileSpace/pdblinkcard.cc includes/InputSet/PdbFileSpace/pdblinkcard.hpp \
includes/InputSet/PdbFileSpace/pdblink.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdblinkcard.o src/InputSet/PdbFileSpace/pdblinkcard.cc
build/pdblinkresidue.o: src/InputSet/PdbFileSpace/pdblinkresidue.cc includes/InputSet/PdbFileSpace/pdblinkresidue.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdblinkresidue.o src/InputSet/PdbFileSpace/pdblinkresidue.cc
build/pdbmatrixn.o: src/InputSet/PdbFileSpace/pdbmatrixn.cc includes/InputSet/PdbFileSpace/pdbmatrixn.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbmatrixn.o src/InputSet/PdbFileSpace/pdbmatrixn.cc
build/pdbmatrixncard.o: src/InputSet/PdbFileSpace/pdbmatrixncard.cc includes/InputSet/PdbFileSpace/pdbmatrixn.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/InputSet/PdbFileSpace/pdbmatrixncard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbmatrixncard.o src/InputSet/PdbFileSpace/pdbmatrixncard.cc
build/pdbmodel.o: src/InputSet/PdbFileSpace/pdbmodel.cc includes/InputSet/PdbFileSpace/pdbmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbmodel.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbmodel.o src/InputSet/PdbFileSpace/pdbmodel.cc
build/pdbmodelcard.o: src/InputSet/PdbFileSpace/pdbmodelcard.cc includes/InputSet/PdbFileSpace/pdbmodel.hpp \
includes/InputSet/PdbFileSpace/pdbmodelcard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbmodelcard.o src/InputSet/PdbFileSpace/pdbmodelcard.cc
build/pdbmodelresidueset.o: src/InputSet/PdbFileSpace/pdbmodelresidueset.cc includes/InputSet/PdbFileSpace/pdbmodelresidueset.hpp \
includes/InputSet/PdbFileSpace/pdbatomcard.hpp \
includes/InputSet/PdbFileSpace/pdbheterogenatomcard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbmodelresidueset.o src/InputSet/PdbFileSpace/pdbmodelresidueset.cc
build/pdbmodeltypecard.o: src/InputSet/PdbFileSpace/pdbmodeltypecard.cc includes/InputSet/PdbFileSpace/pdbmodeltypecard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbmodeltypecard.o src/InputSet/PdbFileSpace/pdbmodeltypecard.cc
build/pdbnummodelcard.o: src/InputSet/PdbFileSpace/pdbnummodelcard.cc includes/InputSet/PdbFileSpace/pdbnummodelcard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbnummodelcard.o src/InputSet/PdbFileSpace/pdbnummodelcard.cc
build/pdboriginxn.o: src/InputSet/PdbFileSpace/pdboriginxn.cc includes/InputSet/PdbFileSpace/pdboriginxn.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdboriginxn.o src/InputSet/PdbFileSpace/pdboriginxn.cc
build/pdboriginxncard.o: src/InputSet/PdbFileSpace/pdboriginxncard.cc includes/InputSet/PdbFileSpace/pdboriginxn.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/InputSet/PdbFileSpace/pdboriginxncard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdboriginxncard.o src/InputSet/PdbFileSpace/pdboriginxncard.cc
build/pdbresidue.o: src/InputSet/PdbFileSpace/pdbresidue.cc includes/InputSet/PdbFileSpace/pdbresidue.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbresidue.o src/InputSet/PdbFileSpace/pdbresidue.cc
build/pdbresiduemodification.o: src/InputSet/PdbFileSpace/pdbresiduemodification.cc includes/InputSet/PdbFileSpace/pdbresiduemodification.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbresiduemodification.o src/InputSet/PdbFileSpace/pdbresiduemodification.cc
build/pdbresiduemodificationcard.o: src/InputSet/PdbFileSpace/pdbresiduemodificationcard.cc includes/InputSet/PdbFileSpace/pdbresiduemodificationcard.hpp \
includes/InputSet/PdbFileSpace/pdbresiduemodification.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbresiduemodificationcard.o src/InputSet/PdbFileSpace/pdbresiduemodificationcard.cc
build/pdbresiduesequence.o: src/InputSet/PdbFileSpace/pdbresiduesequence.cc includes/InputSet/PdbFileSpace/pdbresiduesequence.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \
includes/utils.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbresiduesequence.o src/InputSet/PdbFileSpace/pdbresiduesequence.cc
build/pdbresiduesequencecard.o: src/InputSet/PdbFileSpace/pdbresiduesequencecard.cc includes/InputSet/PdbFileSpace/pdbresiduesequencecard.hpp \
includes/InputSet/PdbFileSpace/pdbresiduesequence.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbresiduesequencecard.o src/InputSet/PdbFileSpace/pdbresiduesequencecard.cc
build/pdbscalen.o: src/InputSet/PdbFileSpace/pdbscalen.cc includes/InputSet/PdbFileSpace/pdbscalen.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbscalen.o src/InputSet/PdbFileSpace/pdbscalen.cc
build/pdbscalencard.o: src/InputSet/PdbFileSpace/pdbscalencard.cc includes/InputSet/PdbFileSpace/pdbscalen.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/InputSet/PdbFileSpace/pdbscalencard.hpp \
includes/utils.hpp \
includes/common.hpp \
includes/Glycan/sugarname.hpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o build/pdbscalencard.o src/InputSet/PdbFileSpace/pdbscalencard.cc
build/pdbsheet.o: src/InputSet/PdbFileSpace/pdbsheet.cc includes/InputSet/PdbFileSpace/pdbsheet.hpp \
includes/InputSet/PdbFileSpace/pdbsheetstrand.hpp \
includes/InputSet/PdbFileSpace/pdbsheetstrandresidue.hpp \
includes/common.hpp \
includes/GeometryTopology/coordinate.hpp \
includes/Glycan/sugarname.hpp \