From 0d6c19c84797b18d71cd8f69bcdd6b0dc56a3881 Mon Sep 17 00:00:00 2001
From: Gary Jones <jonesga@ohsu.edu>
Date: Tue, 16 Jan 2024 13:52:42 -0700
Subject: [PATCH 1/2] 23.3 fb update randal etl Update (#894)

* Update of ETL Processes for Randall Data removes old ETL and inserts a new one

* Rename the labels for steps to be numeric

* Update of ETL step naming to numeric sequential
---
 .../etls/mfshtoRandalData_2024_01.xml         | 106 ++++++++++++++++++
 1 file changed, 106 insertions(+)
 create mode 100644 onprc_ehr/resources/etls/mfshtoRandalData_2024_01.xml

diff --git a/onprc_ehr/resources/etls/mfshtoRandalData_2024_01.xml b/onprc_ehr/resources/etls/mfshtoRandalData_2024_01.xml
new file mode 100644
index 000000000..27c3886ac
--- /dev/null
+++ b/onprc_ehr/resources/etls/mfshtoRandalData_2024_01.xml
@@ -0,0 +1,106 @@
+<!--TGHis was updated to change the naming of steps to be seu7ential-->
+<etl xmlns="http://labkey.org/etl/xml">
+    <name>mfshToRandalData_2024</name>
+    <description>imports the data from mfsh animal details on ONPRC</description>
+    <transforms>
+        <transform id="step1">
+            <description>Define Hansen Study Animals 2022</description>
+            <source queryName="studyAnimals" schemaName="Randal_data"/>
+            <destination queryName="StudyDetails_RandalData" schemaName="Onprc_ehr" targetOption="truncate"/>
+        </transform>
+        <transform id="step2">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_AnimalGroups" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="AnimalGroups-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step3">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_blood" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="BloodDetails-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step4">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_birth" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="BirthDetails-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step5">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_assignment" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="assignment-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step6">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_arrival" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="arrival-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step7">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_weights" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="weights-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step8">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_Cases" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="Cases-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step9">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_clinremarks" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="clinremarks-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step10">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_demographics" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="demographics-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step11">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_deaths" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="deaths-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step12">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_departure" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="departure-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step13">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_drug" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="drug-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step14">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_flags" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="flags-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step15">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_Hematology" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="Hematology-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step16">
+            <description>Export Query to File Share</description>
+            <source queryName="RandData_Housing" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="Housing-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step17">
+            <description>Export Query to File Share Project</description>
+            <source queryName="project" schemaName="pf_ehrData"/>
+            <destination dir="hansenFiles" fileBaseName="Projects-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step18">
+            <description>Export Query to File Share Protocols</description>
+            <source queryName="protocol" schemaName="pf_ehrData"/>
+            <destination dir="hansenFiles" fileBaseName="Protocol-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+        <transform id="step19">
+            <description>Export Query to File Share</description>
+            <source queryName="RandalData_bcs" schemaName="onprc_ehr"/>
+            <destination dir="hansenFiles" fileBaseName="Notes-${TransformRunId}-${Timestamp}" fileExtension="csv" type="file"/>
+        </transform>
+    </transforms>
+    <schedule>
+        <!--5AM-->
+        <cron expression="0 0 05 * * ?"/>
+    </schedule>
+</etl>
\ No newline at end of file

From 5fefd605957cd5904d9495e8f427de41d7aa8497 Mon Sep 17 00:00:00 2001
From: Ohsudev <76500320+Ohsudev@users.noreply.github.com>
Date: Wed, 17 Jan 2024 10:18:27 -0800
Subject: [PATCH 2/2] Modified the process of determining cage size allowed.
 (#897)

---
 onprc_ehr/resources/scripts/onprc_ehr/utils.js               | 2 +-
 .../org/labkey/onprc_ehr/query/ONPRC_EHRTriggerHelper.java   | 5 +++++
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/onprc_ehr/resources/scripts/onprc_ehr/utils.js b/onprc_ehr/resources/scripts/onprc_ehr/utils.js
index 67eaaaced..ece0804ab 100644
--- a/onprc_ehr/resources/scripts/onprc_ehr/utils.js
+++ b/onprc_ehr/resources/scripts/onprc_ehr/utils.js
@@ -105,7 +105,7 @@ ONPRC_EHR.Utils = new function(){
                             if (!row.remark){
                                 EHR.Server.Utils.addError(scriptErrors, cageField, 'You are required to enter a remark', 'INFO');
                                 EHR.Server.Utils.addError(scriptErrors, 'Id', 'You are required to enter a remark', 'INFO');
-                                EHR.Server.Utils.addError(scriptErrors, 'remark', 'A remark is required because of the case size errors.', 'WARN');
+                                EHR.Server.Utils.addError(scriptErrors, 'remark', 'A remark is required because of the cage size errors.', 'WARN');
                             }
                         }
                     }
diff --git a/onprc_ehr/src/org/labkey/onprc_ehr/query/ONPRC_EHRTriggerHelper.java b/onprc_ehr/src/org/labkey/onprc_ehr/query/ONPRC_EHRTriggerHelper.java
index 4a452a252..73911a6d7 100644
--- a/onprc_ehr/src/org/labkey/onprc_ehr/query/ONPRC_EHRTriggerHelper.java
+++ b/onprc_ehr/src/org/labkey/onprc_ehr/query/ONPRC_EHRTriggerHelper.java
@@ -912,6 +912,7 @@ public List<String> verifyCageSize(String room, String cage, List<Double> weight
         List<String> ret = new ArrayList<>();
         Double availableSqFt = cageRow.getSqFt();
         Double availableHeight = cageRow.getHeight();
+        String dividername = cageRow.getDividerName();
 
         Double requiredSqFt = 0.0;
         for (Double w : weights)
@@ -922,7 +923,11 @@ public List<String> verifyCageSize(String room, String cage, List<Double> weight
                 requiredSqFt += s;
             }
         }
+        if ("No Slide".equalsIgnoreCase(dividername))
+        {
+            availableSqFt = availableSqFt * 2;
 
+        }
         if (requiredSqFt > availableSqFt)
         {
             ret.add("These animals are too LARGE for this cage.  Has " + Math.round(availableSqFt) + " sq ft. Requires " + Math.round(requiredSqFt) + ".");