CI.yml

# Author - Stuart McAlpine - stuart.mcalpine@fysik.su.se - Jan 2023
name: DESC Legacy Blinding for Cosmosis

# How does the workflow get triggered?
on:
  # Triggers when push/pull-request made to the main branch.
  pull_request:
    branches:
      - main
  push:
    branches:
      - main
      - develop

# List of jobs for this workflow.

jobs:
  # Our pytest job.
  legacy_blinding-pytest:
    # Our strategy lists the OS and Python versions we want to test on.
    strategy:
      # Don't quit all jobs if only one job fails.
      fail-fast: false
      matrix:
        python-version: ["3.9"]
        os: [ubuntu-20.04, macos-latest]
        include:
          - os: ubuntu-20.04
            INSTALL_DEPS: sudo apt-get update && sudo apt-get -y install gfortran-7 swig libopenmpi-dev openmpi-bin libopenblas-dev && sudo ln -s `which gfortran-7` /usr/local/bin/gfortran
          - os: macos-latest
            INSTALL_DEPS: brew update-reset && HOMEBREW_NO_AUTO_UPDATE=1  HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1 brew install gcc swig libomp open-mpi openblas && if [ ! -f /usr/local/bin/gfortran ]; then ln -s /usr/local/bin/gfortran-$(brew list --versions gcc | awk '{print $2}' | cut -d. -f1) /usr/local/bin/gfortran; fi
    
    # What operating system is this job running on?
    runs-on: ${{ matrix.os }}

    # Our CI steps for this job.
    steps:
      # Check out this repository code.
      - name: Check out repository code
        uses: actions/checkout@v3

      # Install Python.
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: ${{ matrix.INSTALL_DEPS }}

      # Install our package.
      - name: Install legacy_blinding
        run: |
          python -m pip install --upgrade pip
          python -m pip install .
          pytest ./tests

      # Perform the unit test and outputs a coverage report
      - name: Test with pytest
        run: pytest --cov=legacy_blinding --cov-report=xml ./tests

      # Uploads the code coverage results to codecov.io
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v4
        with:
          python-version: "3.9"
      # - run: pip install ".[test]" pytest-cov
      # - run: pytest --cov=legacy_blinding --cov-report=xml
      - uses: codecov/codecov-action@v3
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}