Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Support OMIM Phenotypic Series? #541

Open
4 tasks
ifokkema opened this issue Aug 12, 2021 · 0 comments
Open
4 tasks

Support OMIM Phenotypic Series? #541

ifokkema opened this issue Aug 12, 2021 · 0 comments

Comments

@ifokkema
Copy link
Member

ifokkema commented Aug 12, 2021

(after communication with Ada Hamosh)
LOVD currently uses OMIM IDs to identify diseases. OMIM sorts diseases by their molecular cause and doesn't define generic terms. In LOVD, sometimes initial diagnoses are stored that don't have an OMIM ID, such as "Limb-girdle muscular dystrophy" without linking to one of its subtypes. Ada mentioned the Phenotypic Series that we can then link to, e.g., https://www.omim.org/phenotypicSeries/PS253600. We should check if we can use these IDs to solve this problem.

Perhaps can be part of a larger project supporting OMIM better by using their APIs.

  • Check a few of our "generic" diseases without an OMIM ID and see if we can find this as a Phenotypic Series.
  • Check if we can easily integrate this with our API.
  • Check what database changes we would need to apply to support this.
  • Implement (to be defined).
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant