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Query error in position fixing script #485

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ifokkema opened this issue Dec 4, 2020 · 1 comment
Open

Query error in position fixing script #485

ifokkema opened this issue Dec 4, 2020 · 1 comment
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@ifokkema
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ifokkema commented Dec 4, 2020

The position fixing script returned a query error, possible due to a bug in lovd_getVariantInfo();

Invalid datetime format: 1366 Incorrect integer value: '+?' for column (db).`lovd_v3_variants_on_transcripts`.`position_c_end_intron` at row 1

Looks like lovd_getVariantInfo() can return +? as a position?

@ifokkema ifokkema added this to the 3.0 Build 26 milestone Dec 4, 2020
@ifokkema ifokkema self-assigned this Dec 4, 2020
@ifokkema ifokkema modified the milestones: 3.0 Build 26, 3.0 Build 27 Feb 22, 2021
@ifokkema
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I can't pinpoint the code responsible for this, there are too many possibilities. Tests trying to reproduce the bug have failed. Digging will take too much time. We either need better logging, or we need to forget about this issue.

@ifokkema ifokkema removed this from the 3.0 Build 27 milestone Aug 16, 2021
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