python_pycsou.yml

name: lensless

on: 
  push:
    paths:
      - 'lensless/**'
      - 'setup.py'
      - 'recon_requirements.txt'
  pull_request:
    paths:
      - 'lensless/**'
      - 'setup.py'
      - 'recon_requirements.txt'

jobs:
  build:

    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      max-parallel: 12
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: [3.9, "3.10"]
    steps:
    - uses: actions/checkout@v3
    - name: Checkout submodules
      shell: bash
      run: |
        auth_header="$(git config --local --get http.https://github.com/.extraheader)"
        git submodule sync --recursive
        git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies and build package
      run: |
        python -m pip install --upgrade pip
        python -m pip install -e .
    - name: Lint with flake8
      run: |
        pip install flake8
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=B,C,E,F,W,T4,B9 --show-source --statistics --max-complexity=18 --max-line-length=100 --ignore=E203,E266,E501,W503,F403,F401,C901 --exclude=profile,scripts,docs
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Format with black
      run: |
        pip install black
        black *.py -l 100
        black lensless/*.py -l 100
        black scripts/*.py -l 100
        black scripts/recon/*.py -l 100
        black profile/*.py -l 100
        black test/*.py -l 100
    - name: Test with pytest
      run: |
        pip install -U pytest
        pip install -r recon_requirements.txt
        pip install -r mask_requirements.txt
        pip install git+https://github.com/matthieumeo/pycsou.git@38e9929c29509d350a7ff12c514e2880fdc99d6e
        pytest