Setup

Setup information for hardware and software

Arduino - Start-up

Set-up for arduino environments

Download the Arduino IDE here (for Win64) NOTE - If you download all arduino libraries FIRST, you will not need to add them to your environment, the bootstrapper will do so for you.

All Arduino Libraries are held here, or accessed via Headfixed_5sipper (main) >> Setup >> Arduino_Libraries

Download all Arduino libraries (as .ZIP files) and upload to Arduino IDE via Sketch (top-left corner) >> Include Library >> Add .ZIP Library

Arduino Functions

Load the functions from Arduino Code into your Arduino IDE.

Descriptions of functions:

1. Button.ino >> checkbuttons() | Allows adjustment of spout in boot-up while checking buttons B & C, runtime updated on OLED screen.
2. Dispense.ino >> dispense(int selection) | Dispenses appropriate amount of solution through the spout selection. Volume is pre-set requires editing: switch statement and global variable volume should be implemented
3. Display.ino >> UpdateDisplay() | Updates OLED display
4. Retract_Extend.ino >> retract() - allows retraction of the spout via servo || extend() - allows extension of the spout via servo -- implemented to go to position pos (defined at Arduino boot) requires editing: closed-loop with lickometer to adjust if over-extended/not far enough
5. Rotate.ino >> spoutPosition(int num) | Uses _num _to define which spout is being used, and rotates the spouts such that appropriate spout is in front of mouse.
6. Timeout.ino >> timeout(int low, int high) | Uses a a timeout of random duration between low and high seconds to prevent continuous trials
7. Tone.ino >> playtone(int frequency, int duration) | Plays a tone of frequency pitch for duration time || noise() | Plays a random set of tones (20ms each) for 1 second (50 random tones)
8. Wash.ino >> dispenses through all 5 ports, to be implemented with EtOH and H2O
9. customDelay.ino >> customDelay(int milliseconds) | does nothing over _milliseconds _of time and updates display after delay. This allows gravity-fed alteration of dispensed volume

Bonsai - Start-up

Download and initialize Bonsai

Download the Bonsai installer here, and if applicable the portable .ZIP folder

Setting up your environment:

You can use Bonsai.config from a previous user of Bonsai to record installed dependencies for a setup (stored in same location as executable) >> Finds and downloads all packages necessary to recover the expected state. OR follow the following list of packages:

1. AForge
2. AForge.Video
3. AForge.Video.DirectShow
4. Bonsai
5. Bonsai - Allied Vision Library
6. Bonsai - Arduino Library
7. Bonsai - Audio Library
8. Bonsai - CMT Library
9. Bonsai - Core Library
10. Bonsai - DeepLabCut Library
11. Bonsai - DeepLabCut Design Library
12. Bonsai - Design Library
13. Bonsai - Visualizers Library
14. Bonsai - Dsp Library
15. Bonsai - Dsp Design Library
16. Bonsai - Editor
17. Bonsai - Ephys Library
18. Bonsai - Ephys Design Library
19. Bonsai - Harp Library
20. Bonsai - Numerics Library
21. Bonsai - Osc Library
22. Bonsai - Photon Counting Library
23. Bonsai - Player
24. Bonsai - PointGrey Library
25. Bonsai - PointGrey2 Library
26. Bonsai - Scripting Library
27. Bonsai - Shaders Library
28. Bonsai - Spinnaker Library
29. Bonsai - Starter Pack
30. Bonsai - System Library
31. Bonsai - System Design Library
32. Bonsai - Video Library
33. Bonsai - Video Design Library
34. Bonsai - Vision Library
35. Bonsai - Windows Input Library
36. CMT.NET
37. FTD2XX_NET Managed Wrapper
38. IronPython
39. IronPython Standard Library
40. ScintillaNET Source Editing Component
41. Math.NET Numerics
42. Neurophotometrics
43. Neurophotometrics.Design
44. OpenAL Redist
45. OpenCV Overlay
46. OpenCV.NET
47. OpenTK