diff --git a/Makefile b/Makefile
index 3b01a45..42b4a24 100644
--- a/Makefile
+++ b/Makefile
@@ -1,29 +1,15 @@
 
-# download-transforms:
-
-# 	wget "XXX" -O data/raw/merged-kg_nodes.tsv
-
-# merge-kg-microbe-function:
-# 	PWD=$(pwd)
-# 	poetry run kg merge -y $(PWD)/merged_yamls/kg_base_merge.yaml
-# 	poetry run kg duckdb_merge -base-n $(PWD)/data/merged/merged-kg_nodes.tsv -subset-n $(PWD)/data/transformed/nodes.tsv -base-e $(PWD)/data/merged/merged-kg_edges.tsv -subset-e $(PWD)/data/transformed/edges.tsv
-
-# merge-kg-microbe-biomedical:
-# 	PWD=$(pwd)
-# 	poetry run kg merge -y $(PWD)/merged_yamls/kg_biomedical_merge.yaml
-
-# merge-kg-microbe-biomedical-function:
-# 	PWD=$(pwd)
-# 	poetry run kg merge -y $(PWD)/merged_yamls/kg_biomedical_merge.yaml
-# 	poetry run kg duckdb_merge -base-n $(PWD)/data/merged/merged-kg_nodes.tsv -subset-n $(PWD)/data/transformed/nodes.tsv -base-e $(PWD)/data/merged/merged-kg_edges.tsv -subset-e $(PWD)/data/transformed/edges.tsv
-
-# !For testing
-# merge-kg-microbe-biomedical-function:
-# 	poetry run kg merge -y merge_yamls/merge.yaml -m duckdb -base-n '/Users/brooksantangelo/Documents/LozuponeLab/FRMS_2024/duckdb/merged-kg_kg-microbe-base/merged-kg_nodes.tsv' -base-e '/Users/brooksantangelo/Documents/LozuponeLab/FRMS_2024/duckdb/merged-kg_kg-microbe-base/merged-kg_edges.tsv' -subset-n '/Users/brooksantangelo/Documents/Repositories/kg-microbe/data/transformed/uniprot_genome_features/nodes.tsv' -subset-e '/Users/brooksantangelo/Documents/Repositories/kg-microbe/data/transformed/uniprot_genome_features/edges.tsv'
-
 datamodel:
 	poetry run gen-python kg_microbe_merge/schema/merge_schema.yaml > kg_microbe_merge/schema/merge_datamodel.py
 
+kg-microbe-core:
+	poetry run kg merge -m duckdb -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa" --merge-label $@
+
+kg-microbe-function:
+	poetry run kg merge -m duckdb -n 1000000 -e 100000 -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, uniprot_functional_microbes" --merge-label $@
+
+kg-microbe-biomedical:
+	poetry run kg merge -m duckdb -n 1000000 -e 100000 -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, hp, mondo, ctd, wallen_etal, uniprot_human" --merge-label $@
 
-subset-merge:
-	poetry run kg merge -m duckdb -s "bacdive, bactotraits, chebi, ncbitaxon"
\ No newline at end of file
+kg-microbe-biomedical-function-merge:
+	poetry run kg merge -m duckdb -n 1000000 -e 100000 -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, hp, mondo, ctd, wallen_etal, uniprot_human, uniprot_functional_microbes" --merge-label $@
\ No newline at end of file