KG_Microbe_tSNE_only.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "50683b7f-eafb-4d66-a74f-e11747a113de",
   "metadata": {
    "tags": []
   },
   "outputs": [],
   "source": [
    "# run this before running the script:\n",
    "# source /global/cfs/cdirs/m4689/kg-microbe-projects/venv/bin/activate\n",
    "\n",
    "# untar if data/merged-kg_edges.tsv and data/merged-kg_nodes.tsv are not present\n",
    "import os\n",
    "if not os.path.exists(\"data/merged-kg_edges.tsv\") or not os.path.exists(\"data/merged-kg_nodes.tsv\"):\n",
    "    # !tar -xzf data/merged-kg.tar.gz via system call\n",
    "    os.system(\"tar -xzf data/merged-kg.tar.gz\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "4c2b6515-2c4a-4266-b795-82d1a4339394",
   "metadata": {
    "tags": []
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div class=\"graph-report\"><style>.graph-report li {margin: 0.5em 0 0.5em 0;}.graph-report .paragraph {text-align: justify;word-break: break-all;}.graph-report .small-columns {column-count: 4;column-gap: 2em;}.graph-report .medium-columns {column-count: 3;column-gap: 2em;}.graph-report .large-columns {column-count: 2;column-gap: 2em;}.graph-report .single-column {}@media only screen and (max-width: 600px) {.graph-report .small-columns {column-count: 1;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 600px) and (max-width: 800px) {.graph-report .small-columns {column-count: 2;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 800px) and (max-width: 1024px) {.graph-report .small-columns {column-count: 3;}.graph-report .medium-columns {column-count: 2;}.graph-report .large-columns {column-count: 1;}}</style><h2>KG Microbe</h2><p class=\"paragraph\">The undirected multigraph KG Microbe has 1.34M heterogeneous nodes and 2.76M heterogeneous edges. The graph contains 30.46K connected components (of which 30.44K are disconnected nodes), with the largest one containing 1.31M nodes and the smallest one containing a single node. The RAM requirements for the nodes and edges data structures are 153.69MB and 32.83MB respectively.</p><h3 style=\"margin: 1em 0 0 0;\">Degree centrality</h3><p class=\"paragraph\">The minimum node degree is 0, the maximum node degree is 37.98K, the mode degree is 1, the mean degree is 4.11 and the node degree median is 1.</p><p class=\"paragraph\">The nodes with the highest degree centrality are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15378' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15378'>CHEBI:15378</a> (degree 37.98K and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15377' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15377'>CHEBI:15377</a> (degree 31.79K and node types <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> and <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>).</p><h3 style=\"margin: 1em 0 0 0;\">Node types</h3><p class=\"paragraph\">The graph has 17 node types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (978.36K nodes, 72.79%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a> (219.58K nodes, 16.34%), <a href='https://biolink.github.io/biolink-model/docs/MolecularActivity.html' target='_blank' title='Go to BioLink to get more informations about biolink:MolecularActivity'>biolink:MolecularActivity</a> (81.03K nodes, 6.03%), <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a> (37.12K nodes, 2.76%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> (10.41K nodes, 0.77%), <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (9.38K nodes, 0.70%), <a href='https://biolink.github.io/biolink-model/docs/Enzyme.html' target='_blank' title='Go to BioLink to get more informations about biolink:Enzyme'>biolink:Enzyme</a> (7.25K nodes, 0.54%), <a href='https://biolink.github.io/biolink-model/docs/CellularComponent.html' target='_blank' title='Go to BioLink to get more informations about biolink:CellularComponent'>biolink:CellularComponent</a> (4.52K nodes, 0.34%), <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a> (1.40K nodes, 0.10%) and <a href='https://biolink.github.io/biolink-model/docs/AnatomicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:AnatomicalEntity'>biolink:AnatomicalEntity</a> (596 nodes, 0.04%). The node types are multi-label, and the node with most node types has 2 node types. The RAM requirement for the node types data structure is 86.03MB.</p><h4 style=\"margin: 1em 0 0 0;\">Singleton node types</h4><p class=\"paragraph\">Singleton node types are node types that are assigned exclusively to a single node, making the node type relatively meaningless, as it adds no more information than the node name itself. The graph contains a singleton node type, which is <a href='https://biolink.github.io/biolink-model/docs/Cell.html' target='_blank' title='Go to BioLink to get more informations about biolink:Cell'>biolink:Cell</a> (node CL:0000000 (node type <a href='https://biolink.github.io/biolink-model/docs/Cell.html' target='_blank' title='Go to BioLink to get more informations about biolink:Cell'>biolink:Cell</a>)).</p><h3 style=\"margin: 1em 0 0 0;\">Edge types</h3><p class=\"paragraph\">The graph has 23 edge types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a> (2.82M edges, 51.02%), <a href='https://biolink.github.io/biolink-model/docs/consumes.html' target='_blank' title='Go to BioLink to get more informations about biolink:consumes'>biolink:consumes</a> (507.64K edges, 9.20%), <a href='https://biolink.github.io/biolink-model/docs/has_phenotype.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_phenotype'>biolink:has_phenotype</a> (327.31K edges, 5.93%), <a href='https://biolink.github.io/biolink-model/docs/has_participant.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_participant'>biolink:has_participant</a> (315.69K edges, 5.72%), <a href='https://biolink.github.io/biolink-model/docs/capable_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:capable_of'>biolink:capable_of</a> (263.20K edges, 4.77%), <a href='https://biolink.github.io/biolink-model/docs/has_part.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_part'>biolink:has_part</a> (236.85K edges, 4.29%), <a href='https://biolink.github.io/biolink-model/docs/related_to.html' target='_blank' title='Go to BioLink to get more informations about biolink:related_to'>biolink:related_to</a> (214.72K edges, 3.89%), <a href='https://biolink.github.io/biolink-model/docs/location_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:location_of'>biolink:location_of</a> (197.68K edges, 3.58%), <a href='https://biolink.github.io/biolink-model/docs/has_output.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_output'>biolink:has_output</a> (163.02K edges, 2.95%) and <a href='https://biolink.github.io/biolink-model/docs/has_input.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_input'>biolink:has_input</a> (163.02K edges, 2.95%). The RAM requirement for the edge types data structure is 22.08MB.</p><h3 style=\"margin: 1em 0 0 0;\">Topological Oddities</h3><p class=\"paragraph\">A topological oddity is a set of nodes in the graph that <i>may be derived</i> by an error during the generation of the edge list of the graph and, depending on the task, could bias the results of topology-based models. In the following paragraph, we will describe the detected topological oddities.</p><h4 style=\"margin: 1em 0 0 0;\">Singleton nodes</h4><p class=\"paragraph\">A singleton node is a node disconnected from all other nodes. We have detected 30.44K singleton nodes in the graph, involving a total of 30.44K nodes (2.26%). The detected singleton nodes are:</p><ul class=\"small-columns\"><li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/IAO_0000115' target='_blank' title='Go to Information Artifact Ontology to get more informations about IAO:0000115'>IAO:0000115</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#acronym' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#acronym'>OBO:ncbitaxon#acronym</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#anamorph' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#anamorph'>OBO:ncbitaxon#anamorph</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#blast_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#blast_name'>OBO:ncbitaxon#blast_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#common_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#common_name'>OBO:ncbitaxon#common_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#equivalent_name'>OBO:ncbitaxon#equivalent_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_acronym' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_acronym'>OBO:ncbitaxon#genbank_acronym</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_anamorph' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_anamorph'>OBO:ncbitaxon#genbank_anamorph</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_common_name'>OBO:ncbitaxon#genbank_common_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_synonym' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_synonym'>OBO:ncbitaxon#genbank_synonym</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#has_rank' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#has_rank'>OBO:ncbitaxon#has_rank</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#in_part' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#in_part'>OBO:ncbitaxon#in_part</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#misnomer' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#misnomer'>OBO:ncbitaxon#misnomer</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#misspelling' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#misspelling'>OBO:ncbitaxon#misspelling</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#scientific_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#scientific_name'>OBO:ncbitaxon#scientific_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li></ul><p class=\"paragraph\">And other 30.43K singleton nodes.</p><h4 style=\"margin: 1em 0 0 0;\">Chains</h4><p class=\"paragraph\">A chain is a path of nodes with unique degree 2, that is ignoring self-loop and multi-edges, connecting two strongly connected components of the graph. We have detected  a single chain in the graph, involving a total of 13 nodes and 12 edges, with the largest one involving 13 nodes and 12 edges.</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Chain containing 13 nodes and starts from the node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=40674' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:40674'>NCBITaxon:40674</a>. Specifically, the nodes involved in the chain are: <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32525' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32525'>NCBITaxon:32525</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9347' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9347'>NCBITaxon:9347</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1437010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1437010'>NCBITaxon:1437010</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=314146' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:314146'>NCBITaxon:314146</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9443'>NCBITaxon:9443</a> and other 7. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Node tuples</h4><p class=\"paragraph\">A node tuple is a connected component composed of two nodes. We have detected 10 node tuples in the graph, involving a total of 20 nodes and 10 edges. The detected node tuples are:</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Node tuple containing the nodes CAS-RN:10251-17-9 (node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>) and assay:API_zym_Esterase Lipase (C 8) (node type <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0010001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010001'>RO:0010001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0010002' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010002'>RO:0010002</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0003000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003000'>RO:0003000</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0003001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003001'>RO:0003001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0002162' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002162'>RO:0002162</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0002320' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002320'>RO:0002320</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001018' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001018'>RO:0001018</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001019' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001019'>RO:0001019</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001015' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001015'>RO:0001015</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001025' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001025'>RO:0001025</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0000058' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000058'>RO:0000058</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0000059' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000059'>RO:0000059</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000066' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000066'>BFO:0000066</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000067' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000067'>BFO:0000067</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000054' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000054'>BFO:0000054</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000055' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000055'>BFO:0000055</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_acid_of'>OBO:chebi#is_conjugate_acid_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_base_of'>OBO:chebi#is_conjugate_base_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Isomorphic node groups</h4><p class=\"paragraph\">Isomorphic node groups are nodes with exactly the same neighbours, node types, edge types and weights (if present in the graph). Nodes in such groups are topologically indistinguishable, that is swapping their ID would not change the graph topology. We have detected 145 isomorphic node groups in the graph, involving a total of 315 nodes (0.02%) and 6.39K edges (0.12%), with the largest one involving 4 nodes and 132 edges. The detected isomorphic node groups, sorted by decreasing size, are:</p><ol class=\"medium-columns\"><li><p class=\"paragraph\">Group with 2 nodes (degree 66 and node type <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>): pathways:anoxygenic_photoautotrophy and pathways:photoautotrophy.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:669, solution:668, solution:667 and solution:666.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 48 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3891 and solution:3890.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 31 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3316, solution:3318 and solution:3317.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 30 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:458, solution:457 and solution:456.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 27 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2124, solution:2123 and solution:2122.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 40 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5570 and solution:5571.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:421, solution:422 and solution:420.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3575 and solution:3574.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5725 and solution:5726.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 24 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3311, solution:3310 and solution:3309.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 23 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1499, solution:1500 and solution:1498.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 17 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1754, solution:1753, solution:1755 and solution:1756.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2505, solution:2506 and solution:2508.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1491, solution:1489 and solution:1490.</p></li></ol><p class=\"paragraph\">And other 130 isomorphic node groups.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic trees</h4><p class=\"paragraph\">A dendritic tree is a tree-like structure starting from a root node that is part of another strongly connected component. We have detected 3.58K dendritic trees in the graph, involving a total of 471.21K nodes (35.06%) and 942.42K edges (17.07%), with the largest one involving 193.01K nodes and 386.01K edges. The detected dendritic trees, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=4751' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:4751'>NCBITaxon:4751</a> (degree 7), and containing 193.01K nodes, with a maximal depth of 16, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=112252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:112252'>NCBITaxon:112252</a> (degree 11), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=451864' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:451864'>NCBITaxon:451864</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=57731' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:57731'>NCBITaxon:57731</a> (degree 100), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=584652' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:584652'>NCBITaxon:584652</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=89443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:89443'>NCBITaxon:89443</a> (degree 11.67K). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2759' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2759'>NCBITaxon:2759</a> (degree 23), and containing 58.39K nodes, with a maximal depth of 13, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1401294' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1401294'>NCBITaxon:1401294</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2489521' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2489521'>NCBITaxon:2489521</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2598132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2598132'>NCBITaxon:2598132</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608109' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608109'>NCBITaxon:2608109</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608240' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608240'>NCBITaxon:2608240</a> (degree 4). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K), and containing 33.70K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001001' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001001'>NCBITaxon:1001001</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001168' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001168'>NCBITaxon:1001168</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001532' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001532'>NCBITaxon:1001532</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002118' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002118'>NCBITaxon:1002118</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002663' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002663'>NCBITaxon:1002663</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=48479' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:48479'>NCBITaxon:48479</a> (degree 24.11K), and containing 26.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004094' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004094'>NCBITaxon:1004094</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004095' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004095'>NCBITaxon:1004095</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004096' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004096'>NCBITaxon:1004096</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004097' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004097'>NCBITaxon:1004097</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004098' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004098'>NCBITaxon:1004098</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2593676' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2593676'>NCBITaxon:2593676</a> (degree 22.06K), and containing 21.89K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000662'>NCBITaxon:1000662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001154' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001154'>NCBITaxon:1001154</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001155' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001155'>NCBITaxon:1001155</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001156' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001156'>NCBITaxon:1001156</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001157' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001157'>NCBITaxon:1001157</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613769' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613769'>NCBITaxon:2613769</a> (degree 4.96K), and containing 4.90K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004088' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004088'>NCBITaxon:1004088</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004089' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004089'>NCBITaxon:1004089</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004090' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004090'>NCBITaxon:1004090</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004091' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004091'>NCBITaxon:1004091</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004092' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004092'>NCBITaxon:1004092</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 3.57K dendritic trees.</p><h4 style=\"margin: 1em 0 0 0;\">Stars</h4><p class=\"paragraph\">A star is a tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with a high degree. We have detected 6 stars in the graph, involving a total of 52 nodes and 92 edges, with the largest one involving 34 nodes and 66 edges. The detected stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/NCBITaxon#_taxonomic_rank' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:NCBITaxon#_taxonomic_rank'>OBO:NCBITaxon#_taxonomic_rank</a> (degree 33 and node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>), and containing 34 nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=class' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:class'>NCBITaxon:class</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=cohort' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:cohort'>NCBITaxon:cohort</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=family' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:family'>NCBITaxon:family</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=forma' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:forma'>NCBITaxon:forma</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=genus' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:genus'>NCBITaxon:genus</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>). Its nodes have 2 node types, which are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (31 nodes) and <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (2 nodes). Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2582907' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2582907'>NCBITaxon:2582907</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:BGR-140, strain:DSM-109850 and strain:JCM-39070. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917367' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917367'>NCBITaxon:2917367</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:F2A, strain:LMG-32211T and strain:CCM-9136T. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917368' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917368'>NCBITaxon:2917368</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:GN10, strain:KCTC-82695 and strain:NBRC-114841. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0001000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001000'>RO:0001000</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/ENVO_01003004' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01003004'>ENVO:01003004</a> and <a href='http://purl.obolibrary.org/obo/RO_0001001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001001'>RO:0001001</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have 2 edge types, which are <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a> and <a href='https://biolink.github.io/biolink-model/docs/inverseOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:inverseOf'>biolink:inverseOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002479' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002479'>RO:0002479</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/RO_0002231' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002231'>RO:0002231</a> and <a href='http://purl.obolibrary.org/obo/RO_0002232' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002232'>RO:0002232</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ol><h4 style=\"margin: 1em 0 0 0;\">Dendritic stars</h4><p class=\"paragraph\">A dendritic star is a dendritic tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with high degree and inside a strongly connected component. We have detected 22.46K dendritic stars in the graph, involving a total of 514.09K nodes (38.25%) and 1.03M edges (18.63%), with the largest one involving 29.89K nodes and 59.77K edges. The detected dendritic stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K), and containing 29.89K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000281' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000281'>NCBITaxon:1000281</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000449' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000449'>NCBITaxon:1000449</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000450' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000450'>NCBITaxon:1000450</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000451' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000451'>NCBITaxon:1000451</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000452' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000452'>NCBITaxon:1000452</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2614977' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2614977'>NCBITaxon:2614977</a> (degree 13.28K), and containing 13.26K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001883' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001883'>NCBITaxon:1001883</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001884' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001884'>NCBITaxon:1001884</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001886' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001886'>NCBITaxon:1001886</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001888' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001888'>NCBITaxon:1001888</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001889' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001889'>NCBITaxon:1001889</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2631580' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2631580'>NCBITaxon:2631580</a> (degree 9.15K), and containing 9.11K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100227' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100227'>NCBITaxon:100227</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100228' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100228'>NCBITaxon:100228</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100229' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100229'>NCBITaxon:100229</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100230' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100230'>NCBITaxon:100230</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1005742' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1005742'>NCBITaxon:1005742</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16670' target='_blank' title='Go to CHEBI to get more informations about CHEBI:16670'>CHEBI:16670</a> (degree 7.45K), and containing 7.40K nodes, with a maximal depth of 1, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10094' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10094'>CHEBI:10094</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10095' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10095'>CHEBI:10095</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10096' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10096'>CHEBI:10096</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10097' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10097'>CHEBI:10097</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:107049' target='_blank' title='Go to CHEBI to get more informations about CHEBI:107049'>CHEBI:107049</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613784' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613784'>NCBITaxon:2613784</a> (degree 6.66K), and containing 6.60K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001350' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001350'>NCBITaxon:1001350</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001351' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001351'>NCBITaxon:1001351</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001352' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001352'>NCBITaxon:1001352</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001353' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001353'>NCBITaxon:1001353</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002549' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002549'>NCBITaxon:1002549</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=235627' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:235627'>NCBITaxon:235627</a> (degree 5.76K), and containing 5.73K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001354' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001354'>NCBITaxon:1001354</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002538' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002538'>NCBITaxon:1002538</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004336' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004336'>NCBITaxon:1004336</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004337' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004337'>NCBITaxon:1004337</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004338' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004338'>NCBITaxon:1004338</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 22.46K dendritic stars.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic tendril stars</h4><p class=\"paragraph\">A dendritic tendril star is a dendritic tree with a depth greater than one, where the arms of the star are tendrils. We have detected 437 dendritic tendril stars in the graph, involving a total of 46.16K nodes (3.43%) and 92.33K edges (1.67%), with the largest one involving 27.41K nodes and 54.82K edges. The detected dendritic tendril stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K), and containing 27.41K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000007' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000007'>NCBITaxon:1000007</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000008' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000008'>NCBITaxon:1000008</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000009' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000009'>NCBITaxon:1000009</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000010'>NCBITaxon:1000010</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000011' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000011'>NCBITaxon:1000011</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1280' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1280'>NCBITaxon:1280</a> (degree 5.44K), and containing 2.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004953' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004953'>NCBITaxon:1004953</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074252'>NCBITaxon:1074252</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074919' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074919'>NCBITaxon:1074919</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075076' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075076'>NCBITaxon:1075076</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075077' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075077'>NCBITaxon:1075077</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2620435' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2620435'>NCBITaxon:2620435</a> (degree 2.04K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002117' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002117'>NCBITaxon:1002117</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003129' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003129'>NCBITaxon:1003129</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003130' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003130'>NCBITaxon:1003130</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003131' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003131'>NCBITaxon:1003131</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003132'>NCBITaxon:1003132</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:50699' target='_blank' title='Go to CHEBI to get more informations about CHEBI:50699'>CHEBI:50699</a> (degree 2.06K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:138874' target='_blank' title='Go to CHEBI to get more informations about CHEBI:138874'>CHEBI:138874</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140827' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140827'>CHEBI:140827</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140848' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140848'>CHEBI:140848</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140851' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140851'>CHEBI:140851</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140995' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140995'>CHEBI:140995</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=36866' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:36866'>NCBITaxon:36866</a> (degree 1.83K), and containing 1.82K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100119' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100119'>NCBITaxon:100119</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010661' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010661'>NCBITaxon:1010661</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010662'>NCBITaxon:1010662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026837' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026837'>NCBITaxon:1026837</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026838' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026838'>NCBITaxon:1026838</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608887' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608887'>NCBITaxon:2608887</a> (degree 1.79K), and containing 1.72K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006914' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006914'>NCBITaxon:1006914</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006915' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006915'>NCBITaxon:1006915</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006916' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006916'>NCBITaxon:1006916</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1027806' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1027806'>NCBITaxon:1027806</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=104215' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:104215'>NCBITaxon:104215</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 431 dendritic tendril stars.</p><h4 style=\"margin: 1em 0 0 0;\">Free-floating chains</h4><p class=\"paragraph\">A free-floating chain is a tree with maximal degree two. We have detected  a single free-floating chain in the graph, involving a total of 4 nodes and 6 edges.</p><ul class=\"large-columns\"><li><p class=\"paragraph\">Free-floating chain starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002564' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002564'>RO:0002564</a> (degree 2), and containing 4 nodes, with a maximal depth of 2, which are <a href='http://purl.obolibrary.org/obo/RO_0002481' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002481'>RO:0002481</a>, <a href='http://purl.obolibrary.org/obo/RO_0002563' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002563'>RO:0002563</a> and <a href='http://purl.obolibrary.org/obo/RO_0002464' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002464'>RO:0002464</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Tendrils</h4><p class=\"paragraph\">A tendril is a path starting from a node of degree one, connected to a strongly connected component. We have detected 5.93K tendrils in the graph, involving a total of 6.90K nodes (0.51%) and 13.80K edges (0.25%), with the largest one involving 9 nodes and 18 edges. The detected tendrils, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32524' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32524'>NCBITaxon:32524</a> (degree 3), and containing 9 nodes, with a maximal depth of 9, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8457' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8457'>NCBITaxon:8457</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32561' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32561'>NCBITaxon:32561</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1329799' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1329799'>NCBITaxon:1329799</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8492' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8492'>NCBITaxon:8492</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=436486' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:436486'>NCBITaxon:436486</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/PO_0000003' target='_blank' title='Go to Plant Ontology to get more informations about PO:0000003'>PO:0000003</a> (degree 5), and containing 6 nodes, with a maximal depth of 6, which are <a href='http://purl.obolibrary.org/obo/FOODON_03411013' target='_blank' title='Go to FOODON to get more informations about FOODON:03411013'>FOODON:03411013</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411048' target='_blank' title='Go to FOODON to get more informations about FOODON:03411048'>FOODON:03411048</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411009' target='_blank' title='Go to FOODON to get more informations about FOODON:03411009'>FOODON:03411009</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411016' target='_blank' title='Go to FOODON to get more informations about FOODON:03411016'>FOODON:03411016</a> and <a href='http://purl.obolibrary.org/obo/FOODON_03412344' target='_blank' title='Go to FOODON to get more informations about FOODON:03412344'>FOODON:03412344</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://amigo.geneontology.org/amigo/term/GO:0052038' target='_blank' title='Go to Gene Ontology to get more informations about GO:0052038'>GO:0052038</a> (degree 4), and containing 4 nodes, with a maximal depth of 4, which are <a href='http://amigo.geneontology.org/amigo/term/GO:1990215' target='_blank' title='Go to Gene Ontology to get more informations about GO:1990215'>GO:1990215</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0141157' target='_blank' title='Go to Gene Ontology to get more informations about GO:0141157'>GO:0141157</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0044079' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044079'>GO:0044079</a> and <a href='http://amigo.geneontology.org/amigo/term/GO:0044762' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044762'>GO:0044762</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:85834' target='_blank' title='Go to CHEBI to get more informations about CHEBI:85834'>CHEBI:85834</a> (degree 3), and containing 3 nodes, with a maximal depth of 3, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145306' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145306'>CHEBI:145306</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145307' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145307'>CHEBI:145307</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145229' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145229'>CHEBI:145229</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0000052' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000052'>RO:0000052</a> (degree 6), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/RO_0002314' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002314'>RO:0002314</a>, <a href='http://purl.obolibrary.org/obo/RO_0002502' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002502'>RO:0002502</a> and <a href='http://purl.obolibrary.org/obo/RO_0002503' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002503'>RO:0002503</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/ENVO_01001170' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001170'>ENVO:01001170</a> (degree 7), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/ENVO_01001171' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001171'>ENVO:01001171</a>, <a href='http://purl.obolibrary.org/obo/ENVO_01001635' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001635'>ENVO:01001635</a> and <a href='http://purl.obolibrary.org/obo/ENVO_01001636' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001636'>ENVO:01001636</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 5.92K tendrils.</p></div>"
      ],
      "text/plain": [
       "<div class=\"graph-report\"><style>.graph-report li {margin: 0.5em 0 0.5em 0;}.graph-report .paragraph {text-align: justify;word-break: break-all;}.graph-report .small-columns {column-count: 4;column-gap: 2em;}.graph-report .medium-columns {column-count: 3;column-gap: 2em;}.graph-report .large-columns {column-count: 2;column-gap: 2em;}.graph-report .single-column {}@media only screen and (max-width: 600px) {.graph-report .small-columns {column-count: 1;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 600px) and (max-width: 800px) {.graph-report .small-columns {column-count: 2;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 800px) and (max-width: 1024px) {.graph-report .small-columns {column-count: 3;}.graph-report .medium-columns {column-count: 2;}.graph-report .large-columns {column-count: 1;}}</style><h2>KG Microbe</h2><p class=\"paragraph\">The undirected multigraph KG Microbe has 1.34M heterogeneous nodes and 2.76M heterogeneous edges. The graph contains 30.46K connected components (of which 30.44K are disconnected nodes), with the largest one containing 1.31M nodes and the smallest one containing a single node. The RAM requirements for the nodes and edges data structures are 153.69MB and 32.83MB respectively.</p><h3 style=\"margin: 1em 0 0 0;\">Degree centrality</h3><p class=\"paragraph\">The minimum node degree is 0, the maximum node degree is 37.98K, the mode degree is 1, the mean degree is 4.11 and the node degree median is 1.</p><p class=\"paragraph\">The nodes with the highest degree centrality are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15378' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15378'>CHEBI:15378</a> (degree 37.98K and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15377' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15377'>CHEBI:15377</a> (degree 31.79K and node types <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> and <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>).</p><h3 style=\"margin: 1em 0 0 0;\">Node types</h3><p class=\"paragraph\">The graph has 17 node types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (978.36K nodes, 72.79%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a> (219.58K nodes, 16.34%), <a href='https://biolink.github.io/biolink-model/docs/MolecularActivity.html' target='_blank' title='Go to BioLink to get more informations about biolink:MolecularActivity'>biolink:MolecularActivity</a> (81.03K nodes, 6.03%), <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a> (37.12K nodes, 2.76%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> (10.41K nodes, 0.77%), <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (9.38K nodes, 0.70%), <a href='https://biolink.github.io/biolink-model/docs/Enzyme.html' target='_blank' title='Go to BioLink to get more informations about biolink:Enzyme'>biolink:Enzyme</a> (7.25K nodes, 0.54%), <a href='https://biolink.github.io/biolink-model/docs/CellularComponent.html' target='_blank' title='Go to BioLink to get more informations about biolink:CellularComponent'>biolink:CellularComponent</a> (4.52K nodes, 0.34%), <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a> (1.40K nodes, 0.10%) and <a href='https://biolink.github.io/biolink-model/docs/AnatomicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:AnatomicalEntity'>biolink:AnatomicalEntity</a> (596 nodes, 0.04%). The node types are multi-label, and the node with most node types has 2 node types. The RAM requirement for the node types data structure is 86.03MB.</p><h4 style=\"margin: 1em 0 0 0;\">Singleton node types</h4><p class=\"paragraph\">Singleton node types are node types that are assigned exclusively to a single node, making the node type relatively meaningless, as it adds no more information than the node name itself. The graph contains a singleton node type, which is <a href='https://biolink.github.io/biolink-model/docs/Cell.html' target='_blank' title='Go to BioLink to get more informations about biolink:Cell'>biolink:Cell</a> (node CL:0000000 (node type <a href='https://biolink.github.io/biolink-model/docs/Cell.html' target='_blank' title='Go to BioLink to get more informations about biolink:Cell'>biolink:Cell</a>)).</p><h3 style=\"margin: 1em 0 0 0;\">Edge types</h3><p class=\"paragraph\">The graph has 23 edge types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a> (2.82M edges, 51.02%), <a href='https://biolink.github.io/biolink-model/docs/consumes.html' target='_blank' title='Go to BioLink to get more informations about biolink:consumes'>biolink:consumes</a> (507.64K edges, 9.20%), <a href='https://biolink.github.io/biolink-model/docs/has_phenotype.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_phenotype'>biolink:has_phenotype</a> (327.31K edges, 5.93%), <a href='https://biolink.github.io/biolink-model/docs/has_participant.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_participant'>biolink:has_participant</a> (315.69K edges, 5.72%), <a href='https://biolink.github.io/biolink-model/docs/capable_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:capable_of'>biolink:capable_of</a> (263.20K edges, 4.77%), <a href='https://biolink.github.io/biolink-model/docs/has_part.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_part'>biolink:has_part</a> (236.85K edges, 4.29%), <a href='https://biolink.github.io/biolink-model/docs/related_to.html' target='_blank' title='Go to BioLink to get more informations about biolink:related_to'>biolink:related_to</a> (214.72K edges, 3.89%), <a href='https://biolink.github.io/biolink-model/docs/location_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:location_of'>biolink:location_of</a> (197.68K edges, 3.58%), <a href='https://biolink.github.io/biolink-model/docs/has_output.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_output'>biolink:has_output</a> (163.02K edges, 2.95%) and <a href='https://biolink.github.io/biolink-model/docs/has_input.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_input'>biolink:has_input</a> (163.02K edges, 2.95%). The RAM requirement for the edge types data structure is 22.08MB.</p><h3 style=\"margin: 1em 0 0 0;\">Topological Oddities</h3><p class=\"paragraph\">A topological oddity is a set of nodes in the graph that <i>may be derived</i> by an error during the generation of the edge list of the graph and, depending on the task, could bias the results of topology-based models. In the following paragraph, we will describe the detected topological oddities.</p><h4 style=\"margin: 1em 0 0 0;\">Singleton nodes</h4><p class=\"paragraph\">A singleton node is a node disconnected from all other nodes. We have detected 30.44K singleton nodes in the graph, involving a total of 30.44K nodes (2.26%). The detected singleton nodes are:</p><ul class=\"small-columns\"><li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/IAO_0000115' target='_blank' title='Go to Information Artifact Ontology to get more informations about IAO:0000115'>IAO:0000115</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#acronym' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#acronym'>OBO:ncbitaxon#acronym</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#anamorph' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#anamorph'>OBO:ncbitaxon#anamorph</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#blast_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#blast_name'>OBO:ncbitaxon#blast_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#common_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#common_name'>OBO:ncbitaxon#common_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#equivalent_name'>OBO:ncbitaxon#equivalent_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_acronym' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_acronym'>OBO:ncbitaxon#genbank_acronym</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_anamorph' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_anamorph'>OBO:ncbitaxon#genbank_anamorph</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_common_name'>OBO:ncbitaxon#genbank_common_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#genbank_synonym' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#genbank_synonym'>OBO:ncbitaxon#genbank_synonym</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#has_rank' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#has_rank'>OBO:ncbitaxon#has_rank</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#in_part' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#in_part'>OBO:ncbitaxon#in_part</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#misnomer' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#misnomer'>OBO:ncbitaxon#misnomer</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#misspelling' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#misspelling'>OBO:ncbitaxon#misspelling</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li>\n",
       "<li><p class=\"paragraph\"><a href='http://purl.obolibrary.org/obo/ncbitaxon#scientific_name' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:ncbitaxon#scientific_name'>OBO:ncbitaxon#scientific_name</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>)</p></li></ul><p class=\"paragraph\">And other 30.43K singleton nodes.</p><h4 style=\"margin: 1em 0 0 0;\">Chains</h4><p class=\"paragraph\">A chain is a path of nodes with unique degree 2, that is ignoring self-loop and multi-edges, connecting two strongly connected components of the graph. We have detected  a single chain in the graph, involving a total of 13 nodes and 12 edges, with the largest one involving 13 nodes and 12 edges.</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Chain containing 13 nodes and starts from the node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=40674' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:40674'>NCBITaxon:40674</a>. Specifically, the nodes involved in the chain are: <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32525' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32525'>NCBITaxon:32525</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9347' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9347'>NCBITaxon:9347</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1437010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1437010'>NCBITaxon:1437010</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=314146' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:314146'>NCBITaxon:314146</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9443'>NCBITaxon:9443</a> and other 7. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Node tuples</h4><p class=\"paragraph\">A node tuple is a connected component composed of two nodes. We have detected 10 node tuples in the graph, involving a total of 20 nodes and 10 edges. The detected node tuples are:</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Node tuple containing the nodes CAS-RN:10251-17-9 (node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>) and assay:API_zym_Esterase Lipase (C 8) (node type <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0010001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010001'>RO:0010001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0010002' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010002'>RO:0010002</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0003000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003000'>RO:0003000</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0003001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003001'>RO:0003001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0002162' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002162'>RO:0002162</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0002320' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002320'>RO:0002320</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001018' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001018'>RO:0001018</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001019' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001019'>RO:0001019</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001015' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001015'>RO:0001015</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001025' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001025'>RO:0001025</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0000058' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000058'>RO:0000058</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0000059' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000059'>RO:0000059</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000066' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000066'>BFO:0000066</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000067' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000067'>BFO:0000067</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000054' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000054'>BFO:0000054</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000055' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000055'>BFO:0000055</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_acid_of'>OBO:chebi#is_conjugate_acid_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_base_of'>OBO:chebi#is_conjugate_base_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Isomorphic node groups</h4><p class=\"paragraph\">Isomorphic node groups are nodes with exactly the same neighbours, node types, edge types and weights (if present in the graph). Nodes in such groups are topologically indistinguishable, that is swapping their ID would not change the graph topology. We have detected 145 isomorphic node groups in the graph, involving a total of 315 nodes (0.02%) and 6.39K edges (0.12%), with the largest one involving 4 nodes and 132 edges. The detected isomorphic node groups, sorted by decreasing size, are:</p><ol class=\"medium-columns\"><li><p class=\"paragraph\">Group with 2 nodes (degree 66 and node type <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>): pathways:anoxygenic_photoautotrophy and pathways:photoautotrophy.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:669, solution:668, solution:667 and solution:666.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 48 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3891 and solution:3890.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 31 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3316, solution:3318 and solution:3317.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 30 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:458, solution:457 and solution:456.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 27 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2124, solution:2123 and solution:2122.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 40 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5570 and solution:5571.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:421, solution:422 and solution:420.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3575 and solution:3574.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5725 and solution:5726.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 24 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3311, solution:3310 and solution:3309.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 23 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1499, solution:1500 and solution:1498.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 17 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1754, solution:1753, solution:1755 and solution:1756.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2505, solution:2506 and solution:2508.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1491, solution:1489 and solution:1490.</p></li></ol><p class=\"paragraph\">And other 130 isomorphic node groups.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic trees</h4><p class=\"paragraph\">A dendritic tree is a tree-like structure starting from a root node that is part of another strongly connected component. We have detected 3.58K dendritic trees in the graph, involving a total of 471.21K nodes (35.06%) and 942.42K edges (17.07%), with the largest one involving 193.01K nodes and 386.01K edges. The detected dendritic trees, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=4751' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:4751'>NCBITaxon:4751</a> (degree 7), and containing 193.01K nodes, with a maximal depth of 16, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=112252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:112252'>NCBITaxon:112252</a> (degree 11), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=451864' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:451864'>NCBITaxon:451864</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=57731' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:57731'>NCBITaxon:57731</a> (degree 100), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=584652' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:584652'>NCBITaxon:584652</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=89443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:89443'>NCBITaxon:89443</a> (degree 11.67K). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2759' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2759'>NCBITaxon:2759</a> (degree 23), and containing 58.39K nodes, with a maximal depth of 13, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1401294' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1401294'>NCBITaxon:1401294</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2489521' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2489521'>NCBITaxon:2489521</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2598132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2598132'>NCBITaxon:2598132</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608109' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608109'>NCBITaxon:2608109</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608240' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608240'>NCBITaxon:2608240</a> (degree 4). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K), and containing 33.70K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001001' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001001'>NCBITaxon:1001001</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001168' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001168'>NCBITaxon:1001168</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001532' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001532'>NCBITaxon:1001532</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002118' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002118'>NCBITaxon:1002118</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002663' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002663'>NCBITaxon:1002663</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=48479' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:48479'>NCBITaxon:48479</a> (degree 24.11K), and containing 26.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004094' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004094'>NCBITaxon:1004094</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004095' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004095'>NCBITaxon:1004095</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004096' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004096'>NCBITaxon:1004096</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004097' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004097'>NCBITaxon:1004097</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004098' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004098'>NCBITaxon:1004098</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2593676' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2593676'>NCBITaxon:2593676</a> (degree 22.06K), and containing 21.89K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000662'>NCBITaxon:1000662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001154' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001154'>NCBITaxon:1001154</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001155' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001155'>NCBITaxon:1001155</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001156' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001156'>NCBITaxon:1001156</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001157' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001157'>NCBITaxon:1001157</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613769' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613769'>NCBITaxon:2613769</a> (degree 4.96K), and containing 4.90K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004088' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004088'>NCBITaxon:1004088</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004089' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004089'>NCBITaxon:1004089</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004090' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004090'>NCBITaxon:1004090</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004091' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004091'>NCBITaxon:1004091</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004092' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004092'>NCBITaxon:1004092</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 3.57K dendritic trees.</p><h4 style=\"margin: 1em 0 0 0;\">Stars</h4><p class=\"paragraph\">A star is a tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with a high degree. We have detected 6 stars in the graph, involving a total of 52 nodes and 92 edges, with the largest one involving 34 nodes and 66 edges. The detected stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/NCBITaxon#_taxonomic_rank' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:NCBITaxon#_taxonomic_rank'>OBO:NCBITaxon#_taxonomic_rank</a> (degree 33 and node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>), and containing 34 nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=class' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:class'>NCBITaxon:class</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=cohort' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:cohort'>NCBITaxon:cohort</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=family' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:family'>NCBITaxon:family</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=forma' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:forma'>NCBITaxon:forma</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=genus' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:genus'>NCBITaxon:genus</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>). Its nodes have 2 node types, which are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (31 nodes) and <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (2 nodes). Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2582907' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2582907'>NCBITaxon:2582907</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:BGR-140, strain:DSM-109850 and strain:JCM-39070. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917367' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917367'>NCBITaxon:2917367</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:F2A, strain:LMG-32211T and strain:CCM-9136T. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917368' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917368'>NCBITaxon:2917368</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:GN10, strain:KCTC-82695 and strain:NBRC-114841. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0001000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001000'>RO:0001000</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/ENVO_01003004' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01003004'>ENVO:01003004</a> and <a href='http://purl.obolibrary.org/obo/RO_0001001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001001'>RO:0001001</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have 2 edge types, which are <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a> and <a href='https://biolink.github.io/biolink-model/docs/inverseOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:inverseOf'>biolink:inverseOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002479' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002479'>RO:0002479</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/RO_0002231' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002231'>RO:0002231</a> and <a href='http://purl.obolibrary.org/obo/RO_0002232' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002232'>RO:0002232</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ol><h4 style=\"margin: 1em 0 0 0;\">Dendritic stars</h4><p class=\"paragraph\">A dendritic star is a dendritic tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with high degree and inside a strongly connected component. We have detected 22.46K dendritic stars in the graph, involving a total of 514.09K nodes (38.25%) and 1.03M edges (18.63%), with the largest one involving 29.89K nodes and 59.77K edges. The detected dendritic stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K), and containing 29.89K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000281' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000281'>NCBITaxon:1000281</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000449' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000449'>NCBITaxon:1000449</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000450' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000450'>NCBITaxon:1000450</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000451' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000451'>NCBITaxon:1000451</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000452' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000452'>NCBITaxon:1000452</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2614977' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2614977'>NCBITaxon:2614977</a> (degree 13.28K), and containing 13.26K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001883' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001883'>NCBITaxon:1001883</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001884' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001884'>NCBITaxon:1001884</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001886' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001886'>NCBITaxon:1001886</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001888' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001888'>NCBITaxon:1001888</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001889' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001889'>NCBITaxon:1001889</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2631580' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2631580'>NCBITaxon:2631580</a> (degree 9.15K), and containing 9.11K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100227' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100227'>NCBITaxon:100227</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100228' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100228'>NCBITaxon:100228</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100229' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100229'>NCBITaxon:100229</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100230' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100230'>NCBITaxon:100230</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1005742' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1005742'>NCBITaxon:1005742</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16670' target='_blank' title='Go to CHEBI to get more informations about CHEBI:16670'>CHEBI:16670</a> (degree 7.45K), and containing 7.40K nodes, with a maximal depth of 1, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10094' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10094'>CHEBI:10094</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10095' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10095'>CHEBI:10095</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10096' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10096'>CHEBI:10096</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10097' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10097'>CHEBI:10097</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:107049' target='_blank' title='Go to CHEBI to get more informations about CHEBI:107049'>CHEBI:107049</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613784' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613784'>NCBITaxon:2613784</a> (degree 6.66K), and containing 6.60K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001350' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001350'>NCBITaxon:1001350</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001351' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001351'>NCBITaxon:1001351</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001352' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001352'>NCBITaxon:1001352</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001353' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001353'>NCBITaxon:1001353</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002549' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002549'>NCBITaxon:1002549</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=235627' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:235627'>NCBITaxon:235627</a> (degree 5.76K), and containing 5.73K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001354' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001354'>NCBITaxon:1001354</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002538' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002538'>NCBITaxon:1002538</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004336' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004336'>NCBITaxon:1004336</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004337' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004337'>NCBITaxon:1004337</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004338' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004338'>NCBITaxon:1004338</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 22.46K dendritic stars.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic tendril stars</h4><p class=\"paragraph\">A dendritic tendril star is a dendritic tree with a depth greater than one, where the arms of the star are tendrils. We have detected 437 dendritic tendril stars in the graph, involving a total of 46.16K nodes (3.43%) and 92.33K edges (1.67%), with the largest one involving 27.41K nodes and 54.82K edges. The detected dendritic tendril stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K), and containing 27.41K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000007' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000007'>NCBITaxon:1000007</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000008' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000008'>NCBITaxon:1000008</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000009' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000009'>NCBITaxon:1000009</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000010'>NCBITaxon:1000010</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000011' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000011'>NCBITaxon:1000011</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1280' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1280'>NCBITaxon:1280</a> (degree 5.44K), and containing 2.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004953' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004953'>NCBITaxon:1004953</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074252'>NCBITaxon:1074252</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074919' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074919'>NCBITaxon:1074919</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075076' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075076'>NCBITaxon:1075076</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075077' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075077'>NCBITaxon:1075077</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2620435' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2620435'>NCBITaxon:2620435</a> (degree 2.04K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002117' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002117'>NCBITaxon:1002117</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003129' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003129'>NCBITaxon:1003129</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003130' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003130'>NCBITaxon:1003130</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003131' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003131'>NCBITaxon:1003131</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003132'>NCBITaxon:1003132</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:50699' target='_blank' title='Go to CHEBI to get more informations about CHEBI:50699'>CHEBI:50699</a> (degree 2.06K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:138874' target='_blank' title='Go to CHEBI to get more informations about CHEBI:138874'>CHEBI:138874</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140827' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140827'>CHEBI:140827</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140848' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140848'>CHEBI:140848</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140851' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140851'>CHEBI:140851</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140995' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140995'>CHEBI:140995</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=36866' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:36866'>NCBITaxon:36866</a> (degree 1.83K), and containing 1.82K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100119' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100119'>NCBITaxon:100119</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010661' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010661'>NCBITaxon:1010661</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010662'>NCBITaxon:1010662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026837' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026837'>NCBITaxon:1026837</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026838' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026838'>NCBITaxon:1026838</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608887' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608887'>NCBITaxon:2608887</a> (degree 1.79K), and containing 1.72K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006914' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006914'>NCBITaxon:1006914</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006915' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006915'>NCBITaxon:1006915</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006916' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006916'>NCBITaxon:1006916</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1027806' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1027806'>NCBITaxon:1027806</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=104215' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:104215'>NCBITaxon:104215</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 431 dendritic tendril stars.</p><h4 style=\"margin: 1em 0 0 0;\">Free-floating chains</h4><p class=\"paragraph\">A free-floating chain is a tree with maximal degree two. We have detected  a single free-floating chain in the graph, involving a total of 4 nodes and 6 edges.</p><ul class=\"large-columns\"><li><p class=\"paragraph\">Free-floating chain starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002564' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002564'>RO:0002564</a> (degree 2), and containing 4 nodes, with a maximal depth of 2, which are <a href='http://purl.obolibrary.org/obo/RO_0002481' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002481'>RO:0002481</a>, <a href='http://purl.obolibrary.org/obo/RO_0002563' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002563'>RO:0002563</a> and <a href='http://purl.obolibrary.org/obo/RO_0002464' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002464'>RO:0002464</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Tendrils</h4><p class=\"paragraph\">A tendril is a path starting from a node of degree one, connected to a strongly connected component. We have detected 5.93K tendrils in the graph, involving a total of 6.90K nodes (0.51%) and 13.80K edges (0.25%), with the largest one involving 9 nodes and 18 edges. The detected tendrils, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32524' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32524'>NCBITaxon:32524</a> (degree 3), and containing 9 nodes, with a maximal depth of 9, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8457' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8457'>NCBITaxon:8457</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32561' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32561'>NCBITaxon:32561</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1329799' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1329799'>NCBITaxon:1329799</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8492' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8492'>NCBITaxon:8492</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=436486' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:436486'>NCBITaxon:436486</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/PO_0000003' target='_blank' title='Go to Plant Ontology to get more informations about PO:0000003'>PO:0000003</a> (degree 5), and containing 6 nodes, with a maximal depth of 6, which are <a href='http://purl.obolibrary.org/obo/FOODON_03411013' target='_blank' title='Go to FOODON to get more informations about FOODON:03411013'>FOODON:03411013</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411048' target='_blank' title='Go to FOODON to get more informations about FOODON:03411048'>FOODON:03411048</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411009' target='_blank' title='Go to FOODON to get more informations about FOODON:03411009'>FOODON:03411009</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411016' target='_blank' title='Go to FOODON to get more informations about FOODON:03411016'>FOODON:03411016</a> and <a href='http://purl.obolibrary.org/obo/FOODON_03412344' target='_blank' title='Go to FOODON to get more informations about FOODON:03412344'>FOODON:03412344</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://amigo.geneontology.org/amigo/term/GO:0052038' target='_blank' title='Go to Gene Ontology to get more informations about GO:0052038'>GO:0052038</a> (degree 4), and containing 4 nodes, with a maximal depth of 4, which are <a href='http://amigo.geneontology.org/amigo/term/GO:1990215' target='_blank' title='Go to Gene Ontology to get more informations about GO:1990215'>GO:1990215</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0141157' target='_blank' title='Go to Gene Ontology to get more informations about GO:0141157'>GO:0141157</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0044079' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044079'>GO:0044079</a> and <a href='http://amigo.geneontology.org/amigo/term/GO:0044762' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044762'>GO:0044762</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:85834' target='_blank' title='Go to CHEBI to get more informations about CHEBI:85834'>CHEBI:85834</a> (degree 3), and containing 3 nodes, with a maximal depth of 3, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145306' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145306'>CHEBI:145306</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145307' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145307'>CHEBI:145307</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145229' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145229'>CHEBI:145229</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0000052' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000052'>RO:0000052</a> (degree 6), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/RO_0002314' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002314'>RO:0002314</a>, <a href='http://purl.obolibrary.org/obo/RO_0002502' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002502'>RO:0002502</a> and <a href='http://purl.obolibrary.org/obo/RO_0002503' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002503'>RO:0002503</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/ENVO_01001170' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001170'>ENVO:01001170</a> (degree 7), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/ENVO_01001171' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001171'>ENVO:01001171</a>, <a href='http://purl.obolibrary.org/obo/ENVO_01001635' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001635'>ENVO:01001635</a> and <a href='http://purl.obolibrary.org/obo/ENVO_01001636' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001636'>ENVO:01001636</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 5.92K tendrils.</p></div>"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "from grape import Graph\n",
    "\n",
    "kg_microbe = Graph.from_csv(\n",
    "    edge_path=\"data/merged-kg_edges.tsv\",\n",
    "    node_path=\"data/merged-kg_nodes.tsv\",\n",
    "    node_list_separator=\"\\t\",\n",
    "    edge_list_separator=\"\\t\",\n",
    "    node_list_header=True,  # Always true for KG-Hub KGs\n",
    "    edge_list_header=True,  # Always true for KG-Hub KGs\n",
    "    nodes_column='id',  # Always true for KG-Hub KGs\n",
    "    node_list_node_types_column='category',  # Always true for KG-Hub KGs\n",
    "    node_types_separator='|',\n",
    "    sources_column='subject',  # Always true for KG-Hub KGs\n",
    "    destinations_column='object',  # Always true for KG-Hub KGs\n",
    "    edge_list_edge_types_column='predicate',\n",
    "    directed=False,\n",
    "    name='KG Microbe',\n",
    "    # Since we are not providing the node types and edge types lists, the order of\n",
    "    # the node types and edge types would not be deterministic if we were to populate\n",
    "    # the vocabulary in parallel. For this reason, we process them sequentially.\n",
    "    load_node_list_in_parallel=False,\n",
    "    load_edge_list_in_parallel=False,\n",
    ")\n",
    "kg_microbe"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "8715ce6d-ad63-4e61-9545-e4ce2e1ff419",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div class=\"graph-report\"><style>.graph-report li {margin: 0.5em 0 0.5em 0;}.graph-report .paragraph {text-align: justify;word-break: break-all;}.graph-report .small-columns {column-count: 4;column-gap: 2em;}.graph-report .medium-columns {column-count: 3;column-gap: 2em;}.graph-report .large-columns {column-count: 2;column-gap: 2em;}.graph-report .single-column {}@media only screen and (max-width: 600px) {.graph-report .small-columns {column-count: 1;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 600px) and (max-width: 800px) {.graph-report .small-columns {column-count: 2;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 800px) and (max-width: 1024px) {.graph-report .small-columns {column-count: 3;}.graph-report .medium-columns {column-count: 2;}.graph-report .large-columns {column-count: 1;}}</style><h2>KG Microbe</h2><p class=\"paragraph\">The undirected multigraph KG Microbe has 1.31M heterogeneous nodes and 2.76M heterogeneous edges. The graph contains 21 connected components, with the largest one containing 1.31M nodes and the smallest one containing 2 nodes. The RAM requirements for the nodes and edges data structures are 151.65MB and 32.59MB respectively.</p><h3 style=\"margin: 1em 0 0 0;\">Degree centrality</h3><p class=\"paragraph\">The minimum node degree is 1, the maximum node degree is 37.98K, the mode degree is 1, the mean degree is 4.20 and the node degree median is 1.</p><p class=\"paragraph\">The nodes with the highest degree centrality are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15378' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15378'>CHEBI:15378</a> (degree 37.98K and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15377' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15377'>CHEBI:15377</a> (degree 31.79K and node types <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> and <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>).</p><h3 style=\"margin: 1em 0 0 0;\">Node types</h3><p class=\"paragraph\">The graph has 16 node types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (978.11K nodes, 74.45%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a> (200.92K nodes, 15.29%), <a href='https://biolink.github.io/biolink-model/docs/MolecularActivity.html' target='_blank' title='Go to BioLink to get more informations about biolink:MolecularActivity'>biolink:MolecularActivity</a> (78.36K nodes, 5.97%), <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a> (33.40K nodes, 2.54%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> (10.40K nodes, 0.79%), <a href='https://biolink.github.io/biolink-model/docs/Enzyme.html' target='_blank' title='Go to BioLink to get more informations about biolink:Enzyme'>biolink:Enzyme</a> (7.25K nodes, 0.55%), <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (5.11K nodes, 0.39%), <a href='https://biolink.github.io/biolink-model/docs/CellularComponent.html' target='_blank' title='Go to BioLink to get more informations about biolink:CellularComponent'>biolink:CellularComponent</a> (4.05K nodes, 0.31%), <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a> (1.39K nodes, 0.11%) and <a href='https://biolink.github.io/biolink-model/docs/AnatomicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:AnatomicalEntity'>biolink:AnatomicalEntity</a> (596 nodes, 0.05%). The node types are multi-label, and the node with most node types has 2 node types. The RAM requirement for the node types data structure is 68.34MB.</p><h3 style=\"margin: 1em 0 0 0;\">Edge types</h3><p class=\"paragraph\">The graph has 23 edge types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a> (2.82M edges, 51.02%), <a href='https://biolink.github.io/biolink-model/docs/consumes.html' target='_blank' title='Go to BioLink to get more informations about biolink:consumes'>biolink:consumes</a> (507.64K edges, 9.20%), <a href='https://biolink.github.io/biolink-model/docs/has_phenotype.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_phenotype'>biolink:has_phenotype</a> (327.31K edges, 5.93%), <a href='https://biolink.github.io/biolink-model/docs/has_participant.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_participant'>biolink:has_participant</a> (315.69K edges, 5.72%), <a href='https://biolink.github.io/biolink-model/docs/capable_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:capable_of'>biolink:capable_of</a> (263.20K edges, 4.77%), <a href='https://biolink.github.io/biolink-model/docs/has_part.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_part'>biolink:has_part</a> (236.85K edges, 4.29%), <a href='https://biolink.github.io/biolink-model/docs/related_to.html' target='_blank' title='Go to BioLink to get more informations about biolink:related_to'>biolink:related_to</a> (214.72K edges, 3.89%), <a href='https://biolink.github.io/biolink-model/docs/location_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:location_of'>biolink:location_of</a> (197.68K edges, 3.58%), <a href='https://biolink.github.io/biolink-model/docs/has_input.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_input'>biolink:has_input</a> (163.02K edges, 2.95%) and <a href='https://biolink.github.io/biolink-model/docs/has_output.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_output'>biolink:has_output</a> (163.02K edges, 2.95%). The RAM requirement for the edge types data structure is 22.08MB.</p><h3 style=\"margin: 1em 0 0 0;\">Topological Oddities</h3><p class=\"paragraph\">A topological oddity is a set of nodes in the graph that <i>may be derived</i> by an error during the generation of the edge list of the graph and, depending on the task, could bias the results of topology-based models. In the following paragraph, we will describe the detected topological oddities.</p><h4 style=\"margin: 1em 0 0 0;\">Chains</h4><p class=\"paragraph\">A chain is a path of nodes with unique degree 2, that is ignoring self-loop and multi-edges, connecting two strongly connected components of the graph. We have detected  a single chain in the graph, involving a total of 13 nodes and 12 edges, with the largest one involving 13 nodes and 12 edges.</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Chain containing 13 nodes and starts from the node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=40674' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:40674'>NCBITaxon:40674</a>. Specifically, the nodes involved in the chain are: <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32525' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32525'>NCBITaxon:32525</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9347' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9347'>NCBITaxon:9347</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1437010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1437010'>NCBITaxon:1437010</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=314146' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:314146'>NCBITaxon:314146</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9443'>NCBITaxon:9443</a> and other 7. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Node tuples</h4><p class=\"paragraph\">A node tuple is a connected component composed of two nodes. We have detected 10 node tuples in the graph, involving a total of 20 nodes and 10 edges. The detected node tuples are:</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Node tuple containing the nodes CAS-RN:10251-17-9 (node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>) and assay:API_zym_Esterase Lipase (C 8) (node type <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0010001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010001'>RO:0010001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0010002' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010002'>RO:0010002</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0003000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003000'>RO:0003000</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0003001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003001'>RO:0003001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0002162' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002162'>RO:0002162</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0002320' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002320'>RO:0002320</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001018' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001018'>RO:0001018</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001019' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001019'>RO:0001019</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001015' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001015'>RO:0001015</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001025' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001025'>RO:0001025</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0000058' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000058'>RO:0000058</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0000059' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000059'>RO:0000059</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000066' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000066'>BFO:0000066</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000067' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000067'>BFO:0000067</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000054' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000054'>BFO:0000054</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000055' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000055'>BFO:0000055</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_acid_of'>OBO:chebi#is_conjugate_acid_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_base_of'>OBO:chebi#is_conjugate_base_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Isomorphic node groups</h4><p class=\"paragraph\">Isomorphic node groups are nodes with exactly the same neighbours, node types, edge types and weights (if present in the graph). Nodes in such groups are topologically indistinguishable, that is swapping their ID would not change the graph topology. We have detected 145 isomorphic node groups in the graph, involving a total of 315 nodes (0.02%) and 6.39K edges (0.12%), with the largest one involving 4 nodes and 132 edges. The detected isomorphic node groups, sorted by decreasing size, are:</p><ol class=\"medium-columns\"><li><p class=\"paragraph\">Group with 2 nodes (degree 66 and node type <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>): pathways:photoautotrophy and pathways:anoxygenic_photoautotrophy.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:669, solution:668, solution:666 and solution:667.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 48 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3891 and solution:3890.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 31 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3316, solution:3317 and solution:3318.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 30 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:456, solution:457 and solution:458.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 27 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2122, solution:2123 and solution:2124.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 40 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5570 and solution:5571.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:422, solution:420 and solution:421.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3575 and solution:3574.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5726 and solution:5725.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 24 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3311, solution:3310 and solution:3309.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 23 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1499, solution:1500 and solution:1498.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 17 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1756, solution:1753, solution:1754 and solution:1755.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2508, solution:2506 and solution:2505.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1491, solution:1490 and solution:1489.</p></li></ol><p class=\"paragraph\">And other 130 isomorphic node groups.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic trees</h4><p class=\"paragraph\">A dendritic tree is a tree-like structure starting from a root node that is part of another strongly connected component. We have detected 3.58K dendritic trees in the graph, involving a total of 471.21K nodes (35.87%) and 942.42K edges (17.07%), with the largest one involving 193.01K nodes and 386.01K edges. The detected dendritic trees, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=4751' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:4751'>NCBITaxon:4751</a> (degree 7), and containing 193.01K nodes, with a maximal depth of 16, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=112252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:112252'>NCBITaxon:112252</a> (degree 11), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=451864' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:451864'>NCBITaxon:451864</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=57731' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:57731'>NCBITaxon:57731</a> (degree 100), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=584652' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:584652'>NCBITaxon:584652</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=89443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:89443'>NCBITaxon:89443</a> (degree 11.67K). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2759' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2759'>NCBITaxon:2759</a> (degree 23), and containing 58.39K nodes, with a maximal depth of 13, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1401294' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1401294'>NCBITaxon:1401294</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2489521' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2489521'>NCBITaxon:2489521</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2598132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2598132'>NCBITaxon:2598132</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608109' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608109'>NCBITaxon:2608109</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608240' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608240'>NCBITaxon:2608240</a> (degree 4). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K), and containing 33.70K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001001' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001001'>NCBITaxon:1001001</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001168' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001168'>NCBITaxon:1001168</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001532' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001532'>NCBITaxon:1001532</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002118' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002118'>NCBITaxon:1002118</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002663' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002663'>NCBITaxon:1002663</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=48479' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:48479'>NCBITaxon:48479</a> (degree 24.11K), and containing 26.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004094' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004094'>NCBITaxon:1004094</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004095' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004095'>NCBITaxon:1004095</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004096' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004096'>NCBITaxon:1004096</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004097' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004097'>NCBITaxon:1004097</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004098' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004098'>NCBITaxon:1004098</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2593676' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2593676'>NCBITaxon:2593676</a> (degree 22.06K), and containing 21.89K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000662'>NCBITaxon:1000662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001154' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001154'>NCBITaxon:1001154</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001155' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001155'>NCBITaxon:1001155</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001156' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001156'>NCBITaxon:1001156</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001157' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001157'>NCBITaxon:1001157</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613769' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613769'>NCBITaxon:2613769</a> (degree 4.96K), and containing 4.90K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004088' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004088'>NCBITaxon:1004088</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004089' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004089'>NCBITaxon:1004089</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004090' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004090'>NCBITaxon:1004090</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004091' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004091'>NCBITaxon:1004091</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004092' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004092'>NCBITaxon:1004092</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 3.57K dendritic trees.</p><h4 style=\"margin: 1em 0 0 0;\">Stars</h4><p class=\"paragraph\">A star is a tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with a high degree. We have detected 6 stars in the graph, involving a total of 52 nodes and 92 edges, with the largest one involving 34 nodes and 66 edges. The detected stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/NCBITaxon#_taxonomic_rank' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:NCBITaxon#_taxonomic_rank'>OBO:NCBITaxon#_taxonomic_rank</a> (degree 33 and node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>), and containing 34 nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=class' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:class'>NCBITaxon:class</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=cohort' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:cohort'>NCBITaxon:cohort</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=family' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:family'>NCBITaxon:family</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=forma' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:forma'>NCBITaxon:forma</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=genus' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:genus'>NCBITaxon:genus</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>). Its nodes have 2 node types, which are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (31 nodes) and <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (2 nodes). Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2582907' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2582907'>NCBITaxon:2582907</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:BGR-140, strain:DSM-109850 and strain:JCM-39070. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917367' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917367'>NCBITaxon:2917367</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:F2A, strain:LMG-32211T and strain:CCM-9136T. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917368' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917368'>NCBITaxon:2917368</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:GN10, strain:KCTC-82695 and strain:NBRC-114841. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0001000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001000'>RO:0001000</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/ENVO_01003004' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01003004'>ENVO:01003004</a> and <a href='http://purl.obolibrary.org/obo/RO_0001001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001001'>RO:0001001</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have 2 edge types, which are <a href='https://biolink.github.io/biolink-model/docs/inverseOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:inverseOf'>biolink:inverseOf</a> and <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002479' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002479'>RO:0002479</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/RO_0002231' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002231'>RO:0002231</a> and <a href='http://purl.obolibrary.org/obo/RO_0002232' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002232'>RO:0002232</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ol><h4 style=\"margin: 1em 0 0 0;\">Dendritic stars</h4><p class=\"paragraph\">A dendritic star is a dendritic tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with high degree and inside a strongly connected component. We have detected 22.46K dendritic stars in the graph, involving a total of 514.09K nodes (39.13%) and 1.03M edges (18.63%), with the largest one involving 29.89K nodes and 59.77K edges. The detected dendritic stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K), and containing 29.89K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000281' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000281'>NCBITaxon:1000281</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000449' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000449'>NCBITaxon:1000449</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000450' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000450'>NCBITaxon:1000450</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000451' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000451'>NCBITaxon:1000451</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000452' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000452'>NCBITaxon:1000452</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2614977' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2614977'>NCBITaxon:2614977</a> (degree 13.28K), and containing 13.26K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001883' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001883'>NCBITaxon:1001883</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001884' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001884'>NCBITaxon:1001884</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001886' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001886'>NCBITaxon:1001886</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001888' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001888'>NCBITaxon:1001888</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001889' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001889'>NCBITaxon:1001889</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2631580' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2631580'>NCBITaxon:2631580</a> (degree 9.15K), and containing 9.11K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100227' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100227'>NCBITaxon:100227</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100228' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100228'>NCBITaxon:100228</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100229' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100229'>NCBITaxon:100229</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100230' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100230'>NCBITaxon:100230</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1005742' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1005742'>NCBITaxon:1005742</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16670' target='_blank' title='Go to CHEBI to get more informations about CHEBI:16670'>CHEBI:16670</a> (degree 7.45K), and containing 7.40K nodes, with a maximal depth of 1, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10094' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10094'>CHEBI:10094</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10095' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10095'>CHEBI:10095</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10096' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10096'>CHEBI:10096</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10097' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10097'>CHEBI:10097</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:107049' target='_blank' title='Go to CHEBI to get more informations about CHEBI:107049'>CHEBI:107049</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613784' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613784'>NCBITaxon:2613784</a> (degree 6.66K), and containing 6.60K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001350' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001350'>NCBITaxon:1001350</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001351' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001351'>NCBITaxon:1001351</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001352' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001352'>NCBITaxon:1001352</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001353' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001353'>NCBITaxon:1001353</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002549' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002549'>NCBITaxon:1002549</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=235627' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:235627'>NCBITaxon:235627</a> (degree 5.76K), and containing 5.73K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001354' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001354'>NCBITaxon:1001354</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002538' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002538'>NCBITaxon:1002538</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004336' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004336'>NCBITaxon:1004336</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004337' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004337'>NCBITaxon:1004337</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004338' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004338'>NCBITaxon:1004338</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 22.46K dendritic stars.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic tendril stars</h4><p class=\"paragraph\">A dendritic tendril star is a dendritic tree with a depth greater than one, where the arms of the star are tendrils. We have detected 437 dendritic tendril stars in the graph, involving a total of 46.16K nodes (3.51%) and 92.33K edges (1.67%), with the largest one involving 27.41K nodes and 54.82K edges. The detected dendritic tendril stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K), and containing 27.41K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000007' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000007'>NCBITaxon:1000007</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000008' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000008'>NCBITaxon:1000008</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000009' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000009'>NCBITaxon:1000009</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000010'>NCBITaxon:1000010</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000011' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000011'>NCBITaxon:1000011</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1280' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1280'>NCBITaxon:1280</a> (degree 5.44K), and containing 2.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004953' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004953'>NCBITaxon:1004953</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074252'>NCBITaxon:1074252</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074919' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074919'>NCBITaxon:1074919</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075076' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075076'>NCBITaxon:1075076</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075077' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075077'>NCBITaxon:1075077</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2620435' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2620435'>NCBITaxon:2620435</a> (degree 2.04K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002117' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002117'>NCBITaxon:1002117</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003129' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003129'>NCBITaxon:1003129</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003130' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003130'>NCBITaxon:1003130</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003131' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003131'>NCBITaxon:1003131</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003132'>NCBITaxon:1003132</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:50699' target='_blank' title='Go to CHEBI to get more informations about CHEBI:50699'>CHEBI:50699</a> (degree 2.06K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:138874' target='_blank' title='Go to CHEBI to get more informations about CHEBI:138874'>CHEBI:138874</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140827' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140827'>CHEBI:140827</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140848' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140848'>CHEBI:140848</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140851' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140851'>CHEBI:140851</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140995' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140995'>CHEBI:140995</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=36866' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:36866'>NCBITaxon:36866</a> (degree 1.83K), and containing 1.82K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100119' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100119'>NCBITaxon:100119</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010661' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010661'>NCBITaxon:1010661</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010662'>NCBITaxon:1010662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026837' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026837'>NCBITaxon:1026837</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026838' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026838'>NCBITaxon:1026838</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608887' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608887'>NCBITaxon:2608887</a> (degree 1.79K), and containing 1.72K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006914' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006914'>NCBITaxon:1006914</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006915' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006915'>NCBITaxon:1006915</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006916' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006916'>NCBITaxon:1006916</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1027806' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1027806'>NCBITaxon:1027806</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=104215' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:104215'>NCBITaxon:104215</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 431 dendritic tendril stars.</p><h4 style=\"margin: 1em 0 0 0;\">Free-floating chains</h4><p class=\"paragraph\">A free-floating chain is a tree with maximal degree two. We have detected  a single free-floating chain in the graph, involving a total of 4 nodes and 6 edges.</p><ul class=\"large-columns\"><li><p class=\"paragraph\">Free-floating chain starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002564' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002564'>RO:0002564</a> (degree 2), and containing 4 nodes, with a maximal depth of 2, which are <a href='http://purl.obolibrary.org/obo/RO_0002481' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002481'>RO:0002481</a>, <a href='http://purl.obolibrary.org/obo/RO_0002563' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002563'>RO:0002563</a> and <a href='http://purl.obolibrary.org/obo/RO_0002464' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002464'>RO:0002464</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Tendrils</h4><p class=\"paragraph\">A tendril is a path starting from a node of degree one, connected to a strongly connected component. We have detected 5.93K tendrils in the graph, involving a total of 6.90K nodes (0.53%) and 13.80K edges (0.25%), with the largest one involving 9 nodes and 18 edges. The detected tendrils, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32524' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32524'>NCBITaxon:32524</a> (degree 3), and containing 9 nodes, with a maximal depth of 9, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8457' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8457'>NCBITaxon:8457</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32561' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32561'>NCBITaxon:32561</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1329799' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1329799'>NCBITaxon:1329799</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8492' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8492'>NCBITaxon:8492</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=436486' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:436486'>NCBITaxon:436486</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/PO_0000003' target='_blank' title='Go to Plant Ontology to get more informations about PO:0000003'>PO:0000003</a> (degree 5), and containing 6 nodes, with a maximal depth of 6, which are <a href='http://purl.obolibrary.org/obo/FOODON_03411013' target='_blank' title='Go to FOODON to get more informations about FOODON:03411013'>FOODON:03411013</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411048' target='_blank' title='Go to FOODON to get more informations about FOODON:03411048'>FOODON:03411048</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411009' target='_blank' title='Go to FOODON to get more informations about FOODON:03411009'>FOODON:03411009</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411016' target='_blank' title='Go to FOODON to get more informations about FOODON:03411016'>FOODON:03411016</a> and <a href='http://purl.obolibrary.org/obo/FOODON_03412344' target='_blank' title='Go to FOODON to get more informations about FOODON:03412344'>FOODON:03412344</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://amigo.geneontology.org/amigo/term/GO:0052038' target='_blank' title='Go to Gene Ontology to get more informations about GO:0052038'>GO:0052038</a> (degree 4), and containing 4 nodes, with a maximal depth of 4, which are <a href='http://amigo.geneontology.org/amigo/term/GO:1990215' target='_blank' title='Go to Gene Ontology to get more informations about GO:1990215'>GO:1990215</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0141157' target='_blank' title='Go to Gene Ontology to get more informations about GO:0141157'>GO:0141157</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0044079' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044079'>GO:0044079</a> and <a href='http://amigo.geneontology.org/amigo/term/GO:0044762' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044762'>GO:0044762</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:85834' target='_blank' title='Go to CHEBI to get more informations about CHEBI:85834'>CHEBI:85834</a> (degree 3), and containing 3 nodes, with a maximal depth of 3, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145306' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145306'>CHEBI:145306</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145307' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145307'>CHEBI:145307</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145229' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145229'>CHEBI:145229</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0000052' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000052'>RO:0000052</a> (degree 6), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/RO_0002314' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002314'>RO:0002314</a>, <a href='http://purl.obolibrary.org/obo/RO_0002502' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002502'>RO:0002502</a> and <a href='http://purl.obolibrary.org/obo/RO_0002503' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002503'>RO:0002503</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/ENVO_01001170' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001170'>ENVO:01001170</a> (degree 7), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/ENVO_01001171' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001171'>ENVO:01001171</a>, <a href='http://purl.obolibrary.org/obo/ENVO_01001635' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001635'>ENVO:01001635</a> and <a href='http://purl.obolibrary.org/obo/ENVO_01001636' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001636'>ENVO:01001636</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 5.92K tendrils.</p></div>"
      ],
      "text/plain": [
       "<div class=\"graph-report\"><style>.graph-report li {margin: 0.5em 0 0.5em 0;}.graph-report .paragraph {text-align: justify;word-break: break-all;}.graph-report .small-columns {column-count: 4;column-gap: 2em;}.graph-report .medium-columns {column-count: 3;column-gap: 2em;}.graph-report .large-columns {column-count: 2;column-gap: 2em;}.graph-report .single-column {}@media only screen and (max-width: 600px) {.graph-report .small-columns {column-count: 1;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 600px) and (max-width: 800px) {.graph-report .small-columns {column-count: 2;}.graph-report .medium-columns {column-count: 1;}.graph-report .large-columns {column-count: 1;}}@media only screen and (min-width: 800px) and (max-width: 1024px) {.graph-report .small-columns {column-count: 3;}.graph-report .medium-columns {column-count: 2;}.graph-report .large-columns {column-count: 1;}}</style><h2>KG Microbe</h2><p class=\"paragraph\">The undirected multigraph KG Microbe has 1.31M heterogeneous nodes and 2.76M heterogeneous edges. The graph contains 21 connected components, with the largest one containing 1.31M nodes and the smallest one containing 2 nodes. The RAM requirements for the nodes and edges data structures are 151.65MB and 32.59MB respectively.</p><h3 style=\"margin: 1em 0 0 0;\">Degree centrality</h3><p class=\"paragraph\">The minimum node degree is 1, the maximum node degree is 37.98K, the mode degree is 1, the mean degree is 4.20 and the node degree median is 1.</p><p class=\"paragraph\">The nodes with the highest degree centrality are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15378' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15378'>CHEBI:15378</a> (degree 37.98K and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15377' target='_blank' title='Go to CHEBI to get more informations about CHEBI:15377'>CHEBI:15377</a> (degree 31.79K and node types <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> and <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K and node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>).</p><h3 style=\"margin: 1em 0 0 0;\">Node types</h3><p class=\"paragraph\">The graph has 16 node types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (978.11K nodes, 74.45%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a> (200.92K nodes, 15.29%), <a href='https://biolink.github.io/biolink-model/docs/MolecularActivity.html' target='_blank' title='Go to BioLink to get more informations about biolink:MolecularActivity'>biolink:MolecularActivity</a> (78.36K nodes, 5.97%), <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a> (33.40K nodes, 2.54%), <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a> (10.40K nodes, 0.79%), <a href='https://biolink.github.io/biolink-model/docs/Enzyme.html' target='_blank' title='Go to BioLink to get more informations about biolink:Enzyme'>biolink:Enzyme</a> (7.25K nodes, 0.55%), <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (5.11K nodes, 0.39%), <a href='https://biolink.github.io/biolink-model/docs/CellularComponent.html' target='_blank' title='Go to BioLink to get more informations about biolink:CellularComponent'>biolink:CellularComponent</a> (4.05K nodes, 0.31%), <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a> (1.39K nodes, 0.11%) and <a href='https://biolink.github.io/biolink-model/docs/AnatomicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:AnatomicalEntity'>biolink:AnatomicalEntity</a> (596 nodes, 0.05%). The node types are multi-label, and the node with most node types has 2 node types. The RAM requirement for the node types data structure is 68.34MB.</p><h3 style=\"margin: 1em 0 0 0;\">Edge types</h3><p class=\"paragraph\">The graph has 23 edge types, of which the 10 most common are <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a> (2.82M edges, 51.02%), <a href='https://biolink.github.io/biolink-model/docs/consumes.html' target='_blank' title='Go to BioLink to get more informations about biolink:consumes'>biolink:consumes</a> (507.64K edges, 9.20%), <a href='https://biolink.github.io/biolink-model/docs/has_phenotype.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_phenotype'>biolink:has_phenotype</a> (327.31K edges, 5.93%), <a href='https://biolink.github.io/biolink-model/docs/has_participant.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_participant'>biolink:has_participant</a> (315.69K edges, 5.72%), <a href='https://biolink.github.io/biolink-model/docs/capable_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:capable_of'>biolink:capable_of</a> (263.20K edges, 4.77%), <a href='https://biolink.github.io/biolink-model/docs/has_part.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_part'>biolink:has_part</a> (236.85K edges, 4.29%), <a href='https://biolink.github.io/biolink-model/docs/related_to.html' target='_blank' title='Go to BioLink to get more informations about biolink:related_to'>biolink:related_to</a> (214.72K edges, 3.89%), <a href='https://biolink.github.io/biolink-model/docs/location_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:location_of'>biolink:location_of</a> (197.68K edges, 3.58%), <a href='https://biolink.github.io/biolink-model/docs/has_input.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_input'>biolink:has_input</a> (163.02K edges, 2.95%) and <a href='https://biolink.github.io/biolink-model/docs/has_output.html' target='_blank' title='Go to BioLink to get more informations about biolink:has_output'>biolink:has_output</a> (163.02K edges, 2.95%). The RAM requirement for the edge types data structure is 22.08MB.</p><h3 style=\"margin: 1em 0 0 0;\">Topological Oddities</h3><p class=\"paragraph\">A topological oddity is a set of nodes in the graph that <i>may be derived</i> by an error during the generation of the edge list of the graph and, depending on the task, could bias the results of topology-based models. In the following paragraph, we will describe the detected topological oddities.</p><h4 style=\"margin: 1em 0 0 0;\">Chains</h4><p class=\"paragraph\">A chain is a path of nodes with unique degree 2, that is ignoring self-loop and multi-edges, connecting two strongly connected components of the graph. We have detected  a single chain in the graph, involving a total of 13 nodes and 12 edges, with the largest one involving 13 nodes and 12 edges.</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Chain containing 13 nodes and starts from the node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=40674' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:40674'>NCBITaxon:40674</a>. Specifically, the nodes involved in the chain are: <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32525' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32525'>NCBITaxon:32525</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9347' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9347'>NCBITaxon:9347</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1437010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1437010'>NCBITaxon:1437010</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=314146' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:314146'>NCBITaxon:314146</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=9443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:9443'>NCBITaxon:9443</a> and other 7. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Node tuples</h4><p class=\"paragraph\">A node tuple is a connected component composed of two nodes. We have detected 10 node tuples in the graph, involving a total of 20 nodes and 10 edges. The detected node tuples are:</p><ul class=\"medium-columns\"><li><p class=\"paragraph\">Node tuple containing the nodes CAS-RN:10251-17-9 (node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>) and assay:API_zym_Esterase Lipase (C 8) (node type <a href='https://biolink.github.io/biolink-model/docs/NamedThing.html' target='_blank' title='Go to BioLink to get more informations about biolink:NamedThing'>biolink:NamedThing</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0010001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010001'>RO:0010001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0010002' target='_blank' title='Go to Relation Ontology to get more informations about RO:0010002'>RO:0010002</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0003000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003000'>RO:0003000</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0003001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0003001'>RO:0003001</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0002162' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002162'>RO:0002162</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0002320' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002320'>RO:0002320</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001018' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001018'>RO:0001018</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001019' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001019'>RO:0001019</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0001015' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001015'>RO:0001015</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0001025' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001025'>RO:0001025</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/RO_0000058' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000058'>RO:0000058</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/RO_0000059' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000059'>RO:0000059</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000066' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000066'>BFO:0000066</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000067' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000067'>BFO:0000067</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/BFO_0000054' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000054'>BFO:0000054</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/BFO_0000055' target='_blank' title='Go to Basic Formal Ontology to get more informations about BFO:0000055'>BFO:0000055</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li>\n",
       "<li><p class=\"paragraph\">Node tuple containing the nodes <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_acid_of'>OBO:chebi#is_conjugate_acid_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>) and <a href='http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:chebi#is_conjugate_base_of'>OBO:chebi#is_conjugate_base_of</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>).</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Isomorphic node groups</h4><p class=\"paragraph\">Isomorphic node groups are nodes with exactly the same neighbours, node types, edge types and weights (if present in the graph). Nodes in such groups are topologically indistinguishable, that is swapping their ID would not change the graph topology. We have detected 145 isomorphic node groups in the graph, involving a total of 315 nodes (0.02%) and 6.39K edges (0.12%), with the largest one involving 4 nodes and 132 edges. The detected isomorphic node groups, sorted by decreasing size, are:</p><ol class=\"medium-columns\"><li><p class=\"paragraph\">Group with 2 nodes (degree 66 and node type <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>): pathways:photoautotrophy and pathways:anoxygenic_photoautotrophy.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:669, solution:668, solution:666 and solution:667.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 48 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3891 and solution:3890.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 31 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3316, solution:3317 and solution:3318.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 30 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:456, solution:457 and solution:458.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 27 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2122, solution:2123 and solution:2124.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 40 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5570 and solution:5571.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 25 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:422, solution:420 and solution:421.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3575 and solution:3574.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 2 nodes (degree 37 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:5726 and solution:5725.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 24 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:3311, solution:3310 and solution:3309.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 23 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1499, solution:1500 and solution:1498.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 4 nodes (degree 17 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1756, solution:1753, solution:1754 and solution:1755.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:2508, solution:2506 and solution:2505.</p></li>\n",
       "<li><p class=\"paragraph\">Group with 3 nodes (degree 22 and node type <a href='https://biolink.github.io/biolink-model/docs/ChemicalEntity.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalEntity'>biolink:ChemicalEntity</a>): solution:1491, solution:1490 and solution:1489.</p></li></ol><p class=\"paragraph\">And other 130 isomorphic node groups.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic trees</h4><p class=\"paragraph\">A dendritic tree is a tree-like structure starting from a root node that is part of another strongly connected component. We have detected 3.58K dendritic trees in the graph, involving a total of 471.21K nodes (35.87%) and 942.42K edges (17.07%), with the largest one involving 193.01K nodes and 386.01K edges. The detected dendritic trees, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=4751' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:4751'>NCBITaxon:4751</a> (degree 7), and containing 193.01K nodes, with a maximal depth of 16, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=112252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:112252'>NCBITaxon:112252</a> (degree 11), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=451864' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:451864'>NCBITaxon:451864</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=57731' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:57731'>NCBITaxon:57731</a> (degree 100), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=584652' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:584652'>NCBITaxon:584652</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=89443' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:89443'>NCBITaxon:89443</a> (degree 11.67K). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2759' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2759'>NCBITaxon:2759</a> (degree 23), and containing 58.39K nodes, with a maximal depth of 13, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1401294' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1401294'>NCBITaxon:1401294</a> (degree 6), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2489521' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2489521'>NCBITaxon:2489521</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2598132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2598132'>NCBITaxon:2598132</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608109' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608109'>NCBITaxon:2608109</a> (degree 3) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608240' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608240'>NCBITaxon:2608240</a> (degree 4). Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=49928' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:49928'>NCBITaxon:49928</a> (degree 33.70K), and containing 33.70K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001001' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001001'>NCBITaxon:1001001</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001168' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001168'>NCBITaxon:1001168</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001532' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001532'>NCBITaxon:1001532</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002118' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002118'>NCBITaxon:1002118</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002663' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002663'>NCBITaxon:1002663</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=48479' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:48479'>NCBITaxon:48479</a> (degree 24.11K), and containing 26.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004094' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004094'>NCBITaxon:1004094</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004095' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004095'>NCBITaxon:1004095</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004096' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004096'>NCBITaxon:1004096</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004097' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004097'>NCBITaxon:1004097</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004098' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004098'>NCBITaxon:1004098</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2593676' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2593676'>NCBITaxon:2593676</a> (degree 22.06K), and containing 21.89K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000662'>NCBITaxon:1000662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001154' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001154'>NCBITaxon:1001154</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001155' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001155'>NCBITaxon:1001155</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001156' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001156'>NCBITaxon:1001156</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001157' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001157'>NCBITaxon:1001157</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tree starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613769' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613769'>NCBITaxon:2613769</a> (degree 4.96K), and containing 4.90K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004088' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004088'>NCBITaxon:1004088</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004089' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004089'>NCBITaxon:1004089</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004090' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004090'>NCBITaxon:1004090</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004091' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004091'>NCBITaxon:1004091</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004092' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004092'>NCBITaxon:1004092</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 3.57K dendritic trees.</p><h4 style=\"margin: 1em 0 0 0;\">Stars</h4><p class=\"paragraph\">A star is a tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with a high degree. We have detected 6 stars in the graph, involving a total of 52 nodes and 92 edges, with the largest one involving 34 nodes and 66 edges. The detected stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/NCBITaxon#_taxonomic_rank' target='_blank' title='Go to Open Biomedical Ontology to get more informations about OBO:NCBITaxon#_taxonomic_rank'>OBO:NCBITaxon#_taxonomic_rank</a> (degree 33 and node type <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>), and containing 34 nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=class' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:class'>NCBITaxon:class</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=cohort' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:cohort'>NCBITaxon:cohort</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=family' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:family'>NCBITaxon:family</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>), <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=forma' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:forma'>NCBITaxon:forma</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>) and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=genus' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:genus'>NCBITaxon:genus</a> (node type <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>). Its nodes have 2 node types, which are <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a> (31 nodes) and <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a> (2 nodes). Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2582907' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2582907'>NCBITaxon:2582907</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:BGR-140, strain:DSM-109850 and strain:JCM-39070. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917367' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917367'>NCBITaxon:2917367</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:F2A, strain:LMG-32211T and strain:CCM-9136T. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2917368' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2917368'>NCBITaxon:2917368</a> (degree 3), and containing 4 nodes, with a maximal depth of 1, which are strain:GN10, strain:KCTC-82695 and strain:NBRC-114841. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0001000' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001000'>RO:0001000</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/ENVO_01003004' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01003004'>ENVO:01003004</a> and <a href='http://purl.obolibrary.org/obo/RO_0001001' target='_blank' title='Go to Relation Ontology to get more informations about RO:0001001'>RO:0001001</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have 2 edge types, which are <a href='https://biolink.github.io/biolink-model/docs/inverseOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:inverseOf'>biolink:inverseOf</a> and <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Star starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002479' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002479'>RO:0002479</a> (degree 2), and containing 3 nodes, with a maximal depth of 1, which are <a href='http://purl.obolibrary.org/obo/RO_0002231' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002231'>RO:0002231</a> and <a href='http://purl.obolibrary.org/obo/RO_0002232' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002232'>RO:0002232</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ol><h4 style=\"margin: 1em 0 0 0;\">Dendritic stars</h4><p class=\"paragraph\">A dendritic star is a dendritic tree with a maximal depth of one, where nodes with maximal unique degree one are connected to a central root node with high degree and inside a strongly connected component. We have detected 22.46K dendritic stars in the graph, involving a total of 514.09K nodes (39.13%) and 1.03M edges (18.63%), with the largest one involving 29.89K nodes and 59.77K edges. The detected dendritic stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=185979' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:185979'>NCBITaxon:185979</a> (degree 30.02K), and containing 29.89K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000281' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000281'>NCBITaxon:1000281</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000449' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000449'>NCBITaxon:1000449</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000450' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000450'>NCBITaxon:1000450</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000451' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000451'>NCBITaxon:1000451</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000452' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000452'>NCBITaxon:1000452</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2614977' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2614977'>NCBITaxon:2614977</a> (degree 13.28K), and containing 13.26K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001883' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001883'>NCBITaxon:1001883</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001884' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001884'>NCBITaxon:1001884</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001886' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001886'>NCBITaxon:1001886</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001888' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001888'>NCBITaxon:1001888</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001889' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001889'>NCBITaxon:1001889</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2631580' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2631580'>NCBITaxon:2631580</a> (degree 9.15K), and containing 9.11K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100227' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100227'>NCBITaxon:100227</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100228' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100228'>NCBITaxon:100228</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100229' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100229'>NCBITaxon:100229</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100230' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100230'>NCBITaxon:100230</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1005742' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1005742'>NCBITaxon:1005742</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16670' target='_blank' title='Go to CHEBI to get more informations about CHEBI:16670'>CHEBI:16670</a> (degree 7.45K), and containing 7.40K nodes, with a maximal depth of 1, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10094' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10094'>CHEBI:10094</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10095' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10095'>CHEBI:10095</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10096' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10096'>CHEBI:10096</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:10097' target='_blank' title='Go to CHEBI to get more informations about CHEBI:10097'>CHEBI:10097</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:107049' target='_blank' title='Go to CHEBI to get more informations about CHEBI:107049'>CHEBI:107049</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2613784' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2613784'>NCBITaxon:2613784</a> (degree 6.66K), and containing 6.60K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001350' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001350'>NCBITaxon:1001350</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001351' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001351'>NCBITaxon:1001351</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001352' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001352'>NCBITaxon:1001352</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001353' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001353'>NCBITaxon:1001353</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002549' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002549'>NCBITaxon:1002549</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=235627' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:235627'>NCBITaxon:235627</a> (degree 5.76K), and containing 5.73K nodes, with a maximal depth of 1, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1001354' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1001354'>NCBITaxon:1001354</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002538' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002538'>NCBITaxon:1002538</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004336' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004336'>NCBITaxon:1004336</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004337' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004337'>NCBITaxon:1004337</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004338' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004338'>NCBITaxon:1004338</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 22.46K dendritic stars.</p><h4 style=\"margin: 1em 0 0 0;\">Dendritic tendril stars</h4><p class=\"paragraph\">A dendritic tendril star is a dendritic tree with a depth greater than one, where the arms of the star are tendrils. We have detected 437 dendritic tendril stars in the graph, involving a total of 46.16K nodes (3.51%) and 92.33K edges (1.67%), with the largest one involving 27.41K nodes and 54.82K edges. The detected dendritic tendril stars, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=196821' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:196821'>NCBITaxon:196821</a> (degree 27.61K), and containing 27.41K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000007' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000007'>NCBITaxon:1000007</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000008' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000008'>NCBITaxon:1000008</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000009' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000009'>NCBITaxon:1000009</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000010' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000010'>NCBITaxon:1000010</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1000011' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1000011'>NCBITaxon:1000011</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1280' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1280'>NCBITaxon:1280</a> (degree 5.44K), and containing 2.21K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1004953' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1004953'>NCBITaxon:1004953</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074252' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074252'>NCBITaxon:1074252</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1074919' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1074919'>NCBITaxon:1074919</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075076' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075076'>NCBITaxon:1075076</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1075077' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1075077'>NCBITaxon:1075077</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2620435' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2620435'>NCBITaxon:2620435</a> (degree 2.04K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1002117' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1002117'>NCBITaxon:1002117</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003129' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003129'>NCBITaxon:1003129</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003130' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003130'>NCBITaxon:1003130</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003131' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003131'>NCBITaxon:1003131</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1003132' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1003132'>NCBITaxon:1003132</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:50699' target='_blank' title='Go to CHEBI to get more informations about CHEBI:50699'>CHEBI:50699</a> (degree 2.06K), and containing 1.99K nodes, with a maximal depth of 2, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:138874' target='_blank' title='Go to CHEBI to get more informations about CHEBI:138874'>CHEBI:138874</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140827' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140827'>CHEBI:140827</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140848' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140848'>CHEBI:140848</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140851' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140851'>CHEBI:140851</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:140995' target='_blank' title='Go to CHEBI to get more informations about CHEBI:140995'>CHEBI:140995</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=36866' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:36866'>NCBITaxon:36866</a> (degree 1.83K), and containing 1.82K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=100119' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:100119'>NCBITaxon:100119</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010661' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010661'>NCBITaxon:1010661</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1010662' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1010662'>NCBITaxon:1010662</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026837' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026837'>NCBITaxon:1026837</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1026838' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1026838'>NCBITaxon:1026838</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Dendritic tendril star starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=2608887' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:2608887'>NCBITaxon:2608887</a> (degree 1.79K), and containing 1.72K nodes, with a maximal depth of 2, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006914' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006914'>NCBITaxon:1006914</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006915' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006915'>NCBITaxon:1006915</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1006916' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1006916'>NCBITaxon:1006916</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1027806' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1027806'>NCBITaxon:1027806</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=104215' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:104215'>NCBITaxon:104215</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 431 dendritic tendril stars.</p><h4 style=\"margin: 1em 0 0 0;\">Free-floating chains</h4><p class=\"paragraph\">A free-floating chain is a tree with maximal degree two. We have detected  a single free-floating chain in the graph, involving a total of 4 nodes and 6 edges.</p><ul class=\"large-columns\"><li><p class=\"paragraph\">Free-floating chain starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0002564' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002564'>RO:0002564</a> (degree 2), and containing 4 nodes, with a maximal depth of 2, which are <a href='http://purl.obolibrary.org/obo/RO_0002481' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002481'>RO:0002481</a>, <a href='http://purl.obolibrary.org/obo/RO_0002563' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002563'>RO:0002563</a> and <a href='http://purl.obolibrary.org/obo/RO_0002464' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002464'>RO:0002464</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li></ul><h4 style=\"margin: 1em 0 0 0;\">Tendrils</h4><p class=\"paragraph\">A tendril is a path starting from a node of degree one, connected to a strongly connected component. We have detected 5.93K tendrils in the graph, involving a total of 6.90K nodes (0.53%) and 13.80K edges (0.25%), with the largest one involving 9 nodes and 18 edges. The detected tendrils, sorted by decreasing size, are:</p><ol class=\"large-columns\"><li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32524' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32524'>NCBITaxon:32524</a> (degree 3), and containing 9 nodes, with a maximal depth of 9, which are <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8457' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8457'>NCBITaxon:8457</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=32561' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:32561'>NCBITaxon:32561</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=1329799' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:1329799'>NCBITaxon:1329799</a>, <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=8492' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:8492'>NCBITaxon:8492</a> and <a href='https://www.ncbi.nlm.nih.gov/taxonomy/?term=436486' target='_blank' title='Go to NCBI Taxonomy to get more informations about NCBITaxon:436486'>NCBITaxon:436486</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OrganismTaxon.html' target='_blank' title='Go to BioLink to get more informations about biolink:OrganismTaxon'>biolink:OrganismTaxon</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/PO_0000003' target='_blank' title='Go to Plant Ontology to get more informations about PO:0000003'>PO:0000003</a> (degree 5), and containing 6 nodes, with a maximal depth of 6, which are <a href='http://purl.obolibrary.org/obo/FOODON_03411013' target='_blank' title='Go to FOODON to get more informations about FOODON:03411013'>FOODON:03411013</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411048' target='_blank' title='Go to FOODON to get more informations about FOODON:03411048'>FOODON:03411048</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411009' target='_blank' title='Go to FOODON to get more informations about FOODON:03411009'>FOODON:03411009</a>, <a href='http://purl.obolibrary.org/obo/FOODON_03411016' target='_blank' title='Go to FOODON to get more informations about FOODON:03411016'>FOODON:03411016</a> and <a href='http://purl.obolibrary.org/obo/FOODON_03412344' target='_blank' title='Go to FOODON to get more informations about FOODON:03412344'>FOODON:03412344</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://amigo.geneontology.org/amigo/term/GO:0052038' target='_blank' title='Go to Gene Ontology to get more informations about GO:0052038'>GO:0052038</a> (degree 4), and containing 4 nodes, with a maximal depth of 4, which are <a href='http://amigo.geneontology.org/amigo/term/GO:1990215' target='_blank' title='Go to Gene Ontology to get more informations about GO:1990215'>GO:1990215</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0141157' target='_blank' title='Go to Gene Ontology to get more informations about GO:0141157'>GO:0141157</a>, <a href='http://amigo.geneontology.org/amigo/term/GO:0044079' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044079'>GO:0044079</a> and <a href='http://amigo.geneontology.org/amigo/term/GO:0044762' target='_blank' title='Go to Gene Ontology to get more informations about GO:0044762'>GO:0044762</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/BiologicalProcess.html' target='_blank' title='Go to BioLink to get more informations about biolink:BiologicalProcess'>biolink:BiologicalProcess</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:85834' target='_blank' title='Go to CHEBI to get more informations about CHEBI:85834'>CHEBI:85834</a> (degree 3), and containing 3 nodes, with a maximal depth of 3, which are <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145306' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145306'>CHEBI:145306</a>, <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145307' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145307'>CHEBI:145307</a> and <a href='https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:145229' target='_blank' title='Go to CHEBI to get more informations about CHEBI:145229'>CHEBI:145229</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/ChemicalSubstance.html' target='_blank' title='Go to BioLink to get more informations about biolink:ChemicalSubstance'>biolink:ChemicalSubstance</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/RO_0000052' target='_blank' title='Go to Relation Ontology to get more informations about RO:0000052'>RO:0000052</a> (degree 6), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/RO_0002314' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002314'>RO:0002314</a>, <a href='http://purl.obolibrary.org/obo/RO_0002502' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002502'>RO:0002502</a> and <a href='http://purl.obolibrary.org/obo/RO_0002503' target='_blank' title='Go to Relation Ontology to get more informations about RO:0002503'>RO:0002503</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subPropertyOf.html' target='_blank' title='Go to BioLink to get more informations about biolink:subPropertyOf'>biolink:subPropertyOf</a>.</p></li>\n",
       "<li><p class=\"paragraph\">Tendril starting from the root node <a href='http://purl.obolibrary.org/obo/ENVO_01001170' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001170'>ENVO:01001170</a> (degree 7), and containing 3 nodes, with a maximal depth of 3, which are <a href='http://purl.obolibrary.org/obo/ENVO_01001171' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001171'>ENVO:01001171</a>, <a href='http://purl.obolibrary.org/obo/ENVO_01001635' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001635'>ENVO:01001635</a> and <a href='http://purl.obolibrary.org/obo/ENVO_01001636' target='_blank' title='Go to Environment Ontology to get more informations about ENVO:01001636'>ENVO:01001636</a>. Its nodes have a single node type, which is <a href='https://biolink.github.io/biolink-model/docs/OntologyClass.html' target='_blank' title='Go to BioLink to get more informations about biolink:OntologyClass'>biolink:OntologyClass</a>. Its edges have a single edge type, which is <a href='https://biolink.github.io/biolink-model/docs/subclass_of.html' target='_blank' title='Go to BioLink to get more informations about biolink:subclass_of'>biolink:subclass_of</a>.</p></li></ol><p class=\"paragraph\">And other 5.92K tendrils.</p></div>"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "kg_microbe = kg_microbe.remove_disconnected_nodes()\n",
    "kg_microbe"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "71430490-d752-4d7f-b50c-7fc03cd45039",
   "metadata": {},
   "outputs": [],
   "source": [
    "import grape\n",
    "import matplotlib.pyplot as plt\n",
    "import datetime\n",
    "import pandas as pd\n",
    "import numpy as np\n",
    "from grape.embedders import DeepWalkSkipGramEnsmallen\n",
    "from embiggen.utils.abstract_models import EmbeddingResult\n",
    "from typing import Union, List\n",
    "from pathlib import Path\n",
    "\n",
    "# Set the flag to determine if embeddings should be made\n",
    "make_embeddings = False\n",
    "embedding_file_path = Path(\"./DeepWalkSkipGramEnsmallen.tsv.gz\")\n",
    "\n",
    "if make_embeddings:\n",
    "    # Generate embeddings using DeepWalkSkipGramEnsmallen\n",
    "    sg = DeepWalkSkipGramEnsmallen(normalize_by_degree=True, embedding_size=200)\n",
    "    degree_normalized_deepwalk_embedding = sg.fit_transform(kg_microbe)\n",
    "\n",
    "    # Retrieve node embeddings\n",
    "    node_embed = degree_normalized_deepwalk_embedding.get_all_node_embedding()\n",
    "\n",
    "    # Save the first embedding as a compressed TSV file\n",
    "    node_embed_df = pd.DataFrame(node_embed[0])\n",
    "    node_embed_df.to_csv(embedding_file_path.with_name(f\"DeepWalkSkipGramEnsmallen.tsv.gz\"), sep=\"\\t\", compression='gzip')\n",
    "else:  # already have embeddings, just read them in\n",
    "    # Read the embeddings from a file if they already exist\n",
    "    if embedding_file_path.exists():\n",
    "        node_embed_df = pd.read_csv(embedding_file_path, sep=\"\\t\", compression='gzip')\n",
    "        node_embed = [node_embed_df.to_numpy()]\n",
    "    else:\n",
    "        raise FileNotFoundError(f\"Embedding file not found at {embedding_file_path}\")\n",
    "\n",
    "# Create an EmbeddingResult object with the loaded or generated embeddings\n",
    "embedding_result = EmbeddingResult(\n",
    "    embedding_method_name=\"DeepWalkSkipGramEnsmallen\",\n",
    "    node_embeddings=node_embed\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a8fc4a7b-fe1c-43e0-91e1-262f463ed9d1",
   "metadata": {},
   "outputs": [],
   "source": [
    "# from sklearn.manifold import TSNE\n",
    "\n",
    "# # Perform t-SNE on the embeddings\n",
    "# tsne = TSNE(n_components=2, random_state=42)\n",
    "# tsne_result = tsne.fit_transform(node_embed[0])\n",
    "\n",
    "# # Plot t-SNE result\n",
    "# plt.figure(figsize=(10, 7))\n",
    "# plt.scatter(tsne_result[:, 0], tsne_result[:, 1], s=5, alpha=0.6)\n",
    "# plt.title(\"t-SNE Plot of KG Microbe Embeddings\")\n",
    "# plt.xlabel(\"\")\n",
    "# plt.ylabel(\"\")\n",
    "# plt.show()\n",
    "\n",
    "from grape import GraphVisualizer\n",
    "visualizer = GraphVisualizer(kg_microbe, verbose=True).fit_and_plot_all(degree_normalized_deepwalk_embedding)\n",
    "visualizer.fit_and_plot_all(degree_normalized_deepwalk_embedding, verbose=True)\n",
    "plt.savefig('DeepWalkSkipGramEnsmallen.png')\n",
    "plt.savefig('DeepWalkSkipGramEnsmallen.pdf')\n",
    "plt.close() "
   ]
  }
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