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python virtual environment created successfully function call problem #15

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Angle28 opened this issue Nov 20, 2024 · 2 comments
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@Angle28
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Angle28 commented Nov 20, 2024

Hello, I would like to ask you, after the virtual environment is successfully created, what is the Error of reticulate::use_virtualenv('gene_trajectory')? Error in python_config_impl(python): Error 1 occurred running /share/home/bgi_idbmarx/.virtualenvs/gene_trajectory/bin/python: Resource temporarily unavailable
Traceback:

1.reticulate::use_virtualenv("gene_trajectory")
2.use_python(python, required = required)
3.python_config(python)
4.python_config_impl(python)
5.stop("Error ", status, " occurred running ", python, ": ", errmsg)

@fra-pcmgf
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Hi @Angle28,

It seems to be an issue with reticulate, but I am not sure about what is causing it. Can you try recreating the virtual environment?
If it doesn't work, can you post the steps you are doing to create the environment, python version and OS you are using?

@Angle28
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Angle28 commented Nov 22, 2024

Hello, I re-created the environment, but I still can't. I operate in jopyterLab. The python version I use is 3.9.12, the version of reticulate package is 1.25, and the version of GeneTrajectory package is 1.0.0

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