This repository contains scripts to reproduce the analysis and figures in the DA-seq manuscript: "Detection of differentially abundant cell subpopulations discriminates biological states in scRNA-seq data", preprint available here.
Seurat Version 3 is used. Refer to install instructions from Satija lab.
Figure 2: DAseq_melanoma.R
Figure 3: DAseq_mouseSkin.R
Figure 4: DAseq_covidChua.R