From 43257c520d4dd1406267262eddd67343c321b8f2 Mon Sep 17 00:00:00 2001
From: Klaus Schliep <klaus.schliep@gmail.com>
Date: Wed, 6 Nov 2024 09:42:15 +0100
Subject: [PATCH] improve man page

---
 R/phyDat.R    | 2 ++
 man/phyDat.Rd | 4 ++++
 2 files changed, 6 insertions(+)

diff --git a/R/phyDat.R b/R/phyDat.R
index 737ec83f..8d760673 100644
--- a/R/phyDat.R
+++ b/R/phyDat.R
@@ -89,6 +89,8 @@ print.phyDat <- function (x, ...){
 }
 
 #' @rdname phyDat
+#' @param gaps character for gaps (default is '-').
+#' @param compress logical, compress data to store only site patterns.
 #' @export
 cbind.phyDat <- function(..., gaps="-", compress=TRUE){
   object <- as.list(substitute(list(...)))[-1]
diff --git a/man/phyDat.Rd b/man/phyDat.Rd
index a3c0652f..18014143 100644
--- a/man/phyDat.Rd
+++ b/man/phyDat.Rd
@@ -38,6 +38,10 @@ allSitePattern(n, levels = NULL, names = NULL, type = "DNA", code = 1)
 
 \item{...}{further arguments passed to or from other methods.}
 
+\item{gaps}{character for gaps (default is '-').}
+
+\item{compress}{logical, compress data to store only site patterns.}
+
 \item{subset}{a subset of taxa.}
 
 \item{select}{a subset of characters.}