From 20f628242981af729fa78ccae814e5361219cec9 Mon Sep 17 00:00:00 2001
From: Klaus Schliep <klaus.schliep@gmail.com>
Date: Wed, 3 Apr 2024 15:27:36 +0200
Subject: [PATCH] get rid of note

---
 NAMESPACE       | 1 +
 R/baseFreq.R    | 2 +-
 man/baseFreq.Rd | 2 +-
 3 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/NAMESPACE b/NAMESPACE
index 05a28e27..b2069a96 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -303,6 +303,7 @@ importFrom(stats,binomial)
 importFrom(stats,chisq.test)
 importFrom(stats,constrOptim)
 importFrom(stats,cophenetic)
+importFrom(stats,cor)
 importFrom(stats,dbinom)
 importFrom(stats,dgamma)
 importFrom(stats,ecdf)
diff --git a/R/baseFreq.R b/R/baseFreq.R
index 1522cf73..8e8629d7 100644
--- a/R/baseFreq.R
+++ b/R/baseFreq.R
@@ -3,7 +3,7 @@
 #' \code{baseFreq} computes the frequencies (absolute or relative) of the states
 #' from a sample of sequences.
 #' \code{glance} computes some useful information about the alignment.
-#' \code{composition_test} computes a \eqn{\Chi^2}-test testing if the state
+#' \code{composition\_test} computes a \eqn{\chi^2}-test testing if the state
 #' composition for a species differs.
 #'
 #' @param obj,x as object of class phyDat
diff --git a/man/baseFreq.Rd b/man/baseFreq.Rd
index c071344a..5ba3339e 100644
--- a/man/baseFreq.Rd
+++ b/man/baseFreq.Rd
@@ -34,7 +34,7 @@ contrast.}
 \code{baseFreq} computes the frequencies (absolute or relative) of the states
 from a sample of sequences.
 \code{glance} computes some useful information about the alignment.
-\code{composition_test} computes a \eqn{\Chi^2}-test testing if the state
+\code{composition\_test} computes a \eqn{\chi^2}-test testing if the state
 composition for a species differs.
 }
 \examples{