diff --git a/R/superTree.R b/R/superTree.R index 03ffde53..ef7da707 100644 --- a/R/superTree.R +++ b/R/superTree.R @@ -147,9 +147,9 @@ dist.superTree <- function(tree, trace = 0, fun, start = NULL, #' bs <- bootstrap.phyDat(Laurasiatherian, #' FUN = function(x) upgma(dist.hamming(x)), bs=50) #' -#' mrp_st <- superTree(bs) +#' mrp_st <- superTree(bs, minit = 25, maxit=50) #' plot(mrp_st) -#' \dontrun{ +#' \donttest{ #' rf_st <- superTree(bs, method = "RF") #' spr_st <- superTree(bs, method = "SPR") #' } diff --git a/man/superTree.Rd b/man/superTree.Rd index d9712024..38325c63 100644 --- a/man/superTree.Rd +++ b/man/superTree.Rd @@ -48,9 +48,9 @@ set.seed(1) bs <- bootstrap.phyDat(Laurasiatherian, FUN = function(x) upgma(dist.hamming(x)), bs=50) -mrp_st <- superTree(bs) +mrp_st <- superTree(bs, minit = 25, maxit=50) plot(mrp_st) -\dontrun{ +\donttest{ rf_st <- superTree(bs, method = "RF") spr_st <- superTree(bs, method = "SPR") }