diff --git a/README.md b/README.md index 2ba6e3d..6a7722d 100644 --- a/README.md +++ b/README.md @@ -39,9 +39,7 @@ pip install numpy blosc intervaltree tensorflow==1.13.2 pysam matplotlib conda install -c anaconda pigz conda install -c conda-forge parallel zstd conda install -c bioconda samtools vcflib - -# install vcftools -sudo apt-get install vcftools +conda install -c bioconda vcftools # clone Clair git clone --depth=1 https://github.com/HKU-BAL/Clair.git @@ -78,9 +76,6 @@ conda config --add channels conda-forge conda create -n clair-env -c bioconda clair conda activate clair-env -# install vcftools -sudo apt-get install vcftools - # store clair.py PATH into $CLAIR variable CLAIR=`which clair.py`