From 6fe037948e339fbe6bef4a2f3478c125421dd50f Mon Sep 17 00:00:00 2001 From: Becky Reamy Date: Fri, 25 Oct 2024 13:44:08 -0400 Subject: [PATCH 1/5] KPMP-5571: Combined participant and file filters into one --- .../SpatialViewer/Facets/FileFacet.js | 42 ------------------- .../SpatialViewer/Facets/ParticipantFacet.js | 24 +++++++++++ .../SpatialViewer/ImageDatasetList.js | 19 ++------- 3 files changed, 27 insertions(+), 58 deletions(-) delete mode 100644 src/components/SpatialViewer/Facets/FileFacet.js diff --git a/src/components/SpatialViewer/Facets/FileFacet.js b/src/components/SpatialViewer/Facets/FileFacet.js deleted file mode 100644 index 9db5fb8..0000000 --- a/src/components/SpatialViewer/Facets/FileFacet.js +++ /dev/null @@ -1,42 +0,0 @@ -import React, {Component} from 'react'; -import {Facet, MultiCheckboxFacet} from "@elastic/react-search-ui"; -import {Col, Container, Row, UncontrolledAccordion, AccordionItem, AccordionHeader, AccordionBody} from "reactstrap"; - -class FileFacet extends Component { - render() { - return ( - - - - - - Experimental Strategy - - - - - - - - - - - - Image Type - - - - - - - - - - - - - ); - } -} - -export default FileFacet; \ No newline at end of file diff --git a/src/components/SpatialViewer/Facets/ParticipantFacet.js b/src/components/SpatialViewer/Facets/ParticipantFacet.js index a19a8f1..728b1f9 100644 --- a/src/components/SpatialViewer/Facets/ParticipantFacet.js +++ b/src/components/SpatialViewer/Facets/ParticipantFacet.js @@ -16,6 +16,30 @@ class ParticipantFacet extends Component { + + + Experimental Strategy + + + + + + + + + + + + Image Type + + + + + + + + + Participant ID diff --git a/src/components/SpatialViewer/ImageDatasetList.js b/src/components/SpatialViewer/ImageDatasetList.js index f19f2cd..d562b55 100755 --- a/src/components/SpatialViewer/ImageDatasetList.js +++ b/src/components/SpatialViewer/ImageDatasetList.js @@ -33,7 +33,6 @@ import { Pagination } from './Plugins/pagination.js'; import "@elastic/react-search-ui-views/lib/styles/styles.css"; import ReportCard from "../ReportCard/ReportCard"; import ParticipantFacet from './Facets/ParticipantFacet.js'; -import FileFacet from './Facets/FileFacet.js'; class ImageDatasetList extends Component { @@ -45,7 +44,6 @@ class ImageDatasetList extends Component { const defaultHiddenColumns = this.getDefaultHiddenColumnNames(this.getColumns()) this.state = { - activeFilterTab: 'DATASET', tableData: [], cards: this.props.tableSettings.cards || columnCards, currentPage: this.props.tableSettings.currentPage, @@ -260,13 +258,8 @@ class ImageDatasetList extends Component { /> -
-
-
{this.props.setActiveFilterTab(tabEnum.DATASET)}} - className={`filter-tab ${this.props.activeFilterTab === tabEnum.DATASET ? 'active' : ''} rounded border`}>DATASET
-
{this.props.setActiveFilterTab(tabEnum.PARTICIPANT)}} - className={`filter-tab ${this.props.activeFilterTab === tabEnum.PARTICIPANT ? 'active' : ''} rounded border`}>PARTICIPANT
- +
+
{this.props.toggleFilterTab()}}> @@ -274,17 +267,11 @@ class ImageDatasetList extends Component { className="fas fa-angles-left " icon={faAnglesLeft} />
- - {this.props.activeFilterTab === tabEnum.DATASET && - - }{this.props.activeFilterTab === tabEnum.PARTICIPANT && - } -
- + Date: Fri, 25 Oct 2024 14:08:08 -0400 Subject: [PATCH 2/5] KPMP-5571: Fix collapso --- package-lock.json | 14073 ++++++++++------ .../SpatialViewer/ImageDatasetList.js | 6 +- src/index.css.map | 2 +- 3 files changed, 8556 insertions(+), 5525 deletions(-) diff --git a/package-lock.json b/package-lock.json index 3f88c65..6006378 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "hubble-web", - "version": "2.3.0", + "version": "2.6.0", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "hubble-web", - "version": "2.3.0", + "version": "2.6.0", "dependencies": { "@apollo/client": "3.3.7", "@devexpress/dx-react-core": "3.0.0", @@ -20,6 +20,7 @@ "@fortawesome/free-regular-svg-icons": "6.0.0", "@fortawesome/free-solid-svg-icons": "6.0.0", "@fortawesome/react-fontawesome": "0.2.0", + "@hms-dbmi/viv": "0.16.1", "antd": "5.9.3", "autoprefixer": "10.4.4", "axios": "0.24.0", @@ -28,8 +29,9 @@ "history": "5.1.0", "immutability-helper": "3.1.1", "isomorphic-unfetch": "3.1.0", - "kpmp-common-components": "1.2.12", + "kpmp-common-components": "1.2.14", "kpmp-common-styles": "1.0.13", + "mathjs": "13.1.0", "react": "17.0.2", "react-dnd": "15.1.1", "react-dnd-html5-backend": "15.1.2", @@ -42,7 +44,7 @@ "reactstrap": "9.2.0", "redux": "4.1.1", "redux-thunk": "2.3.0", - "vitessce": "3.3.2" + "vitessce": "3.3.4" }, "devDependencies": { "@babel/plugin-proposal-private-property-in-object": "7.21.11", @@ -2042,9 +2044,10 @@ "integrity": "sha512-x/rqGMdzj+fWZvCOYForTghzbtqPDZ5gPwaoNGHdgDfF2QA/XZbCBp4Moo5scrkAMPhB7z26XM/AaHuIJdgauA==" }, "node_modules/@babel/runtime": { - "version": "7.23.9", - "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.23.9.tgz", - "integrity": "sha512-0CX6F+BI2s9dkUqr08KFrAIZgNFj75rdBU/DjCyYLIaV/quFjkk6T+EJ2LkZHyZTbEV4L5p97mNkUsHl2wLFAw==", + "version": "7.26.0", + "resolved": "https://registry.npmjs.org/@babel/runtime/-/runtime-7.26.0.tgz", + "integrity": "sha512-FDSOghenHTiToteC/QRlv2q3DhPZ/oOXTBoirfWNx1Cx3TMVcGWQtMMmQcSvb/JjpNeGzx8Pq/b4fKEJuWm1sw==", + "license": "MIT", "dependencies": { "regenerator-runtime": "^0.14.0" }, @@ -2107,6 +2110,7 @@ "version": "0.2.1", "resolved": "https://registry.npmjs.org/@choojs/findup/-/findup-0.2.1.tgz", "integrity": "sha512-YstAqNb0MCN8PjdLCDfRsBcGVRN41f3vgLvaI0IrIcBp4AqILRSS0DeWNGkicC+f/zRIPJLc+9RURVSepwvfBw==", + "license": "MIT", "dependencies": { "commander": "^2.15.1" }, @@ -2117,7 +2121,8 @@ "node_modules/@choojs/findup/node_modules/commander": { "version": "2.20.3", "resolved": "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz", - "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==" + "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==", + "license": "MIT" }, "node_modules/@craco/craco": { "version": "7.1.0", @@ -2448,6 +2453,7 @@ "resolved": "https://registry.npmjs.org/@danmarshall/deckgl-typings/-/deckgl-typings-3.5.0.tgz", "integrity": "sha512-YDwHoWxAUQdgSkxdqSp+CFUlzrnat9rEeRKucA8zE78iwUVkmOVCRjOrtVf1CjQuBRWhQbs/7/2V3N9wFc9rtw==", "hasInstallScript": true, + "license": "MIT", "dependencies": { "@types/hammerjs": "^2.0.36", "@types/react": "*", @@ -2458,6 +2464,7 @@ "version": "8.8.27", "resolved": "https://registry.npmjs.org/@deck.gl/aggregation-layers/-/aggregation-layers-8.8.27.tgz", "integrity": "sha512-oGjpu+tER+EQOnTL6U2f3flWUoRNn4ouhETXc19i7zakV+8Av5jsdjy+zVY0tswCFFnHSCFd3qE/zZgOmqiTcw==", + "license": "MIT", "dependencies": { "@luma.gl/constants": "^8.5.16", "@luma.gl/shadertools": "^8.5.16", @@ -2474,6 +2481,7 @@ "version": "8.8.27", "resolved": "https://registry.npmjs.org/@deck.gl/carto/-/carto-8.8.27.tgz", "integrity": "sha512-rwtvVLk8tXEUvSBNn8mFRLLboDeIRHDBx3kzv7skxkaa5nt8RaOcvlFA0T2H2jISvfFbVg2RTD3pquQEVXfNHQ==", + "license": "MIT", "dependencies": { "@loaders.gl/gis": "^3.2.10", "@loaders.gl/loader-utils": "^3.2.10", @@ -2504,6 +2512,7 @@ "version": "3.2.4", "resolved": "https://registry.npmjs.org/d3-array/-/d3-array-3.2.4.tgz", "integrity": "sha512-tdQAmyA18i4J7wprpYq8ClcxZy3SC31QMeByyCFyRt7BVHdREQZ5lpzoe5mFEYZUWe+oq8HBvk9JjpibyEV4Jg==", + "license": "ISC", "dependencies": { "internmap": "1 - 2" }, @@ -2515,6 +2524,7 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/d3-color/-/d3-color-3.1.0.tgz", "integrity": "sha512-zg/chbXyeBtMQ1LbD/WSoW2DpC3I0mpmPdW+ynRTj/x2DAWYrIY7qeZIHidozwV24m4iavr15lNwIwLxRmOxhA==", + "license": "ISC", "engines": { "node": ">=12" } @@ -2523,6 +2533,7 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/d3-format/-/d3-format-3.1.0.tgz", "integrity": "sha512-YyUI6AEuY/Wpt8KWLgZHsIU86atmikuoOmCfommt0LYHiQSPjvX2AcFc38PX0CBpr2RCyZhjex+NS/LPOv6YqA==", + "license": "ISC", "engines": { "node": ">=12" } @@ -2531,6 +2542,7 @@ "version": "4.0.2", "resolved": "https://registry.npmjs.org/d3-scale/-/d3-scale-4.0.2.tgz", "integrity": "sha512-GZW464g1SH7ag3Y7hXjf8RoUuAFIqklOAq3MRl4OaWabTFJY9PN/E1YklhXLh+OQ3fM9yS2nOkCoS+WLZ6kvxQ==", + "license": "ISC", "dependencies": { "d3-array": "2.10.0 - 3", "d3-format": "1 - 3", @@ -2546,6 +2558,7 @@ "version": "8.8.27", "resolved": "https://registry.npmjs.org/@deck.gl/core/-/core-8.8.27.tgz", "integrity": "sha512-Gk9YrGGSoFL4TmP0v9GyOXReZMTBrUIU5+g6Ff4gnR6onBVLd+/XNd+IwdBPS85LlnT+/NOGNEG51qsVFrxReg==", + "license": "MIT", "dependencies": { "@loaders.gl/core": "^3.2.10", "@loaders.gl/images": "^3.2.10", @@ -2563,16 +2576,21 @@ } }, "node_modules/@deck.gl/extensions": { - 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Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details." + "deprecated": "Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.", + "license": "MIT" }, "node_modules/sockjs": { "version": "0.3.24", @@ -28930,7 +31813,8 @@ "node_modules/splaytree": { "version": "3.1.2", "resolved": "https://registry.npmjs.org/splaytree/-/splaytree-3.1.2.tgz", - "integrity": "sha512-4OM2BJgC5UzrhVnnJA4BkHKGtjXNzzUfpQjCO8I05xYPsfS/VuQDwjCGGMi8rYQilHEV4j8NBqTFbls/PZEE7A==" + "integrity": "sha512-4OM2BJgC5UzrhVnnJA4BkHKGtjXNzzUfpQjCO8I05xYPsfS/VuQDwjCGGMi8rYQilHEV4j8NBqTFbls/PZEE7A==", + "license": "MIT" }, "node_modules/sprintf-js": { "version": "1.0.3", @@ -29079,7 +31963,8 @@ "node_modules/stream-shift": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/stream-shift/-/stream-shift-1.0.3.tgz", - "integrity": "sha512-76ORR0DO1o1hlKwTbi/DM3EXWGf3ZJYO8cXX5RJwnul2DEg2oyoZyjLNoQM8WsvZiFKCRfC1O0J7iCvie3RZmQ==" + "integrity": "sha512-76ORR0DO1o1hlKwTbi/DM3EXWGf3ZJYO8cXX5RJwnul2DEg2oyoZyjLNoQM8WsvZiFKCRfC1O0J7iCvie3RZmQ==", + "license": "MIT" }, "node_modules/string_decoder": { "version": "1.1.1", @@ -29170,13 +32055,15 @@ } }, "node_modules/string.prototype.trim": { - 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const tabEnum = { - DATASET: 'DATASET', - PARTICIPANT: 'PARTICIPANT', - }; const { columnWidths, sorting } = this.props.tableSettings; const summaryDataset = this.props.summaryDatasets @@ -271,7 +267,7 @@ class ImageDatasetList extends Component {
- + Date: Fri, 25 Oct 2024 14:19:49 -0400 Subject: [PATCH 3/5] KPMP-5571: restore more --- src/components/SpatialViewer/ImageDatasetList.js | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/components/SpatialViewer/ImageDatasetList.js b/src/components/SpatialViewer/ImageDatasetList.js index dda7abd..9b843db 100755 --- a/src/components/SpatialViewer/ImageDatasetList.js +++ b/src/components/SpatialViewer/ImageDatasetList.js @@ -237,7 +237,6 @@ class ImageDatasetList extends Component { }; render() { - const { columnWidths, sorting } = this.props.tableSettings; const summaryDataset = this.props.summaryDatasets const experimentalDataCounts = this.props.experimentalDataCounts @@ -254,7 +253,7 @@ class ImageDatasetList extends Component { /> -
+
Date: Fri, 25 Oct 2024 14:26:11 -0400 Subject: [PATCH 4/5] KPMP-5571: rename --- .../Facets/{ParticipantFacet.js => AllFacets.js} | 0 src/components/SpatialViewer/ImageDatasetList.js | 4 ++-- 2 files changed, 2 insertions(+), 2 deletions(-) rename src/components/SpatialViewer/Facets/{ParticipantFacet.js => AllFacets.js} (100%) diff --git a/src/components/SpatialViewer/Facets/ParticipantFacet.js b/src/components/SpatialViewer/Facets/AllFacets.js similarity index 100% rename from src/components/SpatialViewer/Facets/ParticipantFacet.js rename to src/components/SpatialViewer/Facets/AllFacets.js diff --git a/src/components/SpatialViewer/ImageDatasetList.js b/src/components/SpatialViewer/ImageDatasetList.js index 9b843db..90f6537 100755 --- a/src/components/SpatialViewer/ImageDatasetList.js +++ b/src/components/SpatialViewer/ImageDatasetList.js @@ -32,7 +32,7 @@ import { Pagination } from './Plugins/pagination.js'; import "@elastic/react-search-ui-views/lib/styles/styles.css"; import ReportCard from "../ReportCard/ReportCard"; -import ParticipantFacet from './Facets/ParticipantFacet.js'; +import AllFacets from './Facets/AllFacets.js'; class ImageDatasetList extends Component { @@ -262,7 +262,7 @@ class ImageDatasetList extends Component { className="fas fa-angles-left " icon={faAnglesLeft} />
- +
From 1a27e2f32cdd7a8e683538da8cb82500e2345ec5 Mon Sep 17 00:00:00 2001 From: Becky Reamy Date: Fri, 25 Oct 2024 14:51:06 -0400 Subject: [PATCH 5/5] KPMP-5571: Finish refactoring --- src/components/SpatialViewer/Facets/AllFacets.js | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/components/SpatialViewer/Facets/AllFacets.js b/src/components/SpatialViewer/Facets/AllFacets.js index 728b1f9..b1a427b 100644 --- a/src/components/SpatialViewer/Facets/AllFacets.js +++ b/src/components/SpatialViewer/Facets/AllFacets.js @@ -3,7 +3,7 @@ import {Facet} from "@elastic/react-search-ui"; import {MultiCheckboxFacet} from "@elastic/react-search-ui-views"; import {Col, Container, Row, UncontrolledAccordion, AccordionItem, AccordionHeader, AccordionBody} from "reactstrap"; -class ParticipantFacet extends Component { +class AllFacets extends Component { constructor(props) { super(props); @@ -101,4 +101,4 @@ class ParticipantFacet extends Component { } -export default ParticipantFacet; \ No newline at end of file +export default AllFacets; \ No newline at end of file