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When preallocating deviations, don't replicate over time steps. Instead, replicate over gains.
It might work to use the whichGain vector to map deviations onto specific time steps.
Include an option to either save 1. Directly to a mat file (which may fail from memory issues), or 2. Into a special output file, either .out, .dash, .output, .kf, .kfoutput or something similar.
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