GNU Linux Build

change location of PIO ifdefs to skip larger block #342

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Run time

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Job	Run time
setup	18s
build (Ifremer1)	1m 25s
build (NCEP_st2)	1m 32s
build (NCEP_st4)	1m 35s
build (ite_pdlib)	1m 29s
build (NCEP_st4sbs)	1m 23s
build (NCEP_glwu)	1m 31s
build (OASACM)	1m 25s
build (UKMO)	1m 21s
build (MULTI_ESMF)	1m 37s
	13m 36s