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assembly_env.yaml
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assembly_env.yaml
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name: assembly_env
channels:
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- biopython=1.84=py39hd3abc70_0
- bwa=0.7.18=he4a0461_1
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.33.1=heb4867d_0
- ca-certificates=2024.8.30=hbcca054_0
- curl=8.10.1=hbbe4b11_0
- deprecated=1.2.14=pyh1a96a4e_0
- fastp=0.23.4=h125f33a_5
- flye=2.9.5=py39hdf45acc_1
- htslib=1.21=h5efdd21_0
- icu=70.1=h27087fc_0
- isa-l=2.31.0=h4bc722e_2
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.3=h659f571_0
- ld_impl_linux-64=2.43=h712a8e2_1
- libblas=3.9.0=24_linux64_openblas
- libcblas=3.9.0=24_linux64_openblas
- libcurl=8.10.1=hbbe4b11_0
- libdeflate=1.21=h4bc722e_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libffi=3.4.2=h7f98852_5
- libgcc=14.1.0=h77fa898_1
- libgcc-ng=14.1.0=h69a702a_1
- libgfortran=14.1.0=h69a702a_1
- libgfortran-ng=14.1.0=h69a702a_1
- libgfortran5=14.1.0=hc5f4f2c_1
- libgomp=14.1.0=h77fa898_1
- libiconv=1.17=hd590300_2
- liblapack=3.9.0=24_linux64_openblas
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_hac2b453_1
- libsqlite=3.46.1=hadc24fc_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.1.0=hc0a3c3a_1
- libstdcxx-ng=14.1.0=h4852527_1
- libuuid=2.38.1=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.9.14=h22db469_4
- libzlib=1.3.1=h4ab18f5_1
- nanofilt=2.8.0=py_0
- nanoget=1.19.3=pyhdfd78af_0
- nanomath=1.4.0=pyhdfd78af_0
- ncbi-vdb=3.1.1=h4ac6f70_2
- ncurses=6.5=he02047a_1
- numpy=2.0.2=py39h9cb892a_0
- openjdk=8.0.412=hd590300_1
- openssl=3.3.2=hb9d3cd8_0
- ossuuid=1.6.2=hf484d3e_1000
- pandas=2.2.3=py39h3b40f6f_1
- perl=5.26.2=h36c2ea0_1008
- perl-app-cpanminus=1.7044=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-encode=2.88=pl526_1
- perl-exporter=5.72=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-mime-base64=3.15=pl526_1
- perl-parent=0.236=pl526_1
- perl-uri=1.76=pl526_0
- perl-xml-libxml=2.0132=pl526h7ec2d77_1
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xsloader=0.24=pl526_0
- pilon=1.24=hdfd78af_0
- pip=24.2=pyh8b19718_1
- pysam=0.22.1=py39h61809e1_2
- python=3.9.20=h13acc7a_1_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-tzdata=2024.2=pyhd8ed1ab_0
- python_abi=3.9=5_cp39
- pytz=2024.1=pyhd8ed1ab_0
- readline=8.2=h8228510_1
- samtools=1.21=h50ea8bc_0
- setuptools=75.1.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- sra-tools=3.1.1=h4304569_2
- tk=8.6.13=noxft_h4845f30_101
- tzdata=2024a=h8827d51_1
- wheel=0.44.0=pyhd8ed1ab_0
- wrapt=1.16.0=py39h8cd3c5a_1
- xz=5.2.6=h166bdaf_0
- zstd=1.5.6=ha6fb4c9_0
prefix: /home/jessiea/bin/mambaforge/envs/assembly_env