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This information can alteratively be accessed via GitHub

Required Resources

Hardware:

  • Only your personal computer.

Software:

  • An updated version of Python (Python > 3.0). If you don’t have Python already installed on your PC, we recommend installing Anaconda: Download Anaconda
  • Jupyter Notebook: Download Jupyter Notebook. It can also be installed with Anaconda.
  • SPM12: Download SPM12
  • MATLAB: A copy of MATLAB. SPM12 is designed to work with MATLAB versions R2007a (7.4) to R2023b (9.15), and will not work with earlier versions. It only requires core MATLAB to run (i.e. no toolboxes).
  • JIDT for Python:
    • Download the latest version of JIDT from the GitHub page
    • Install Java. Follow the instructions here (only the first instruction under 'Dependencies').
    • Within the code you're using, indicate where JAVA is installed. For example (Windows):
import os
#Set the JAVA_HOME environment variable
#Replace 'jdk_installation_directory' with the actual JDK installation directory
jdk_installation_directory = 'C:/Program Files/Java/jdk-21'
# Set JAVA_HOME for the current process
os.environ['JAVA_HOME'] = jdk_installation_directory
# To permanently set JAVA_HOME, you need to add it to the system environment variables

Recommended Literature

Information theory and high-order interactions

Basic bibliography:

Further reading:


Dynamic causal modeling

Basic bibliography:

Further reading:


Whole-brain modeling

Basic bibliography:

Further reading: