pom.xml

<?xml version="1.0"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>uk.ac.ebi.eva</groupId>
    <artifactId>eva-pipeline</artifactId>
    <version>2.1-SNAPSHOT</version>

    <parent>
        <groupId>org.springframework.boot</groupId>
        <artifactId>spring-boot-starter-parent</artifactId>
        <version>1.4.1.RELEASE</version>
    </parent>

    <properties>
        <java.version>1.8</java.version>
        <opencga.version>0.5.6</opencga.version>
        <biodata.version>0.4.7</biodata.version>
        <cellbase.version>3.1.3</cellbase.version>
        <postgresql.version>9.1-901-1.jdbc4</postgresql.version>
        <mongo-java-driver.version>2.14.2</mongo-java-driver.version>
    </properties>

    <dependencies>
        <!-- variation-commons -->
        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>variation-commons-batch</artifactId>
            <version>0.7-SNAPSHOT</version>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>variation-commons-core</artifactId>
            <version>0.7-SNAPSHOT</version>
        </dependency>
        <!--<dependency>-->
            <!--<groupId>uk.ac.ebi.eva</groupId>-->
            <!--<artifactId>variation-commons-jpa</artifactId>-->
            <!--<version>0.7-SNAPSHOT</version>-->
        <!--</dependency>-->
        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>variation-commons-mongodb</artifactId>
            <version>0.6</version>
        </dependency>
        <!-- Spring -->
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-batch</artifactId>
        </dependency>
        <dependency>
            <groupId>org.springframework.boot</groupId>
            <artifactId>spring-boot-starter-test</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.springframework.batch</groupId>
            <artifactId>spring-batch-test</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.springframework.data</groupId>
            <artifactId>spring-data-mongodb</artifactId>
        </dependency>
        <!-- DB connectors -->
        <dependency>
            <groupId>mysql</groupId>
            <artifactId>mysql-connector-java</artifactId>
        </dependency>
        <dependency>
            <groupId>postgresql</groupId>
            <artifactId>postgresql</artifactId>
            <version>${postgresql.version}</version>
        </dependency>
        <dependency>
            <groupId>org.mongodb</groupId>
            <artifactId>mongo-java-driver</artifactId>
            <version>${mongo-java-driver.version}</version>
        </dependency>
        <dependency>
            <groupId>org.hsqldb</groupId>
            <artifactId>hsqldb</artifactId>
            <scope>runtime</scope>
        </dependency>
        <!-- 3rd party -->
        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-classic</artifactId>
        </dependency>

        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>opencga-storage-mongodb</artifactId>
            <version>${opencga.version}</version>
            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>slf4j-simple</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>opencga-storage-core</artifactId>
            <version>${opencga.version}</version>
            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>slf4j-simple</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>biodata-models</artifactId>
            <version>${biodata.version}</version>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>biodata-formats</artifactId>
            <version>${biodata.version}</version>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.eva</groupId>
            <artifactId>biodata-tools</artifactId>
            <version>${biodata.version}</version>
            <exclusions>
                <exclusion>
                    <groupId>org.opencb.datastore</groupId>
                    <artifactId>datastore-core</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
    </dependencies>

    <build>
        <finalName>${project.artifactId}-${project.version}-${git.commit.id.abbrev}</finalName>
        <sourceDirectory>src/main/java</sourceDirectory>
        <testSourceDirectory>src/test/java</testSourceDirectory>

        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.2</version>
                <configuration>
                    <source>${java.version}</source>
                    <target>${java.version}</target>
                    <showDeprecation>true</showDeprecation>
                    <showWarnings>true</showWarnings>
                    <encoding>UTF-8</encoding>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <configuration>
                    <!-- Travis build workaround -->
                    <argLine>-Xms1024m -Xmx2048m</argLine>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.springframework.boot</groupId>
                <artifactId>spring-boot-maven-plugin</artifactId>
                <executions>
                    <execution>
                        <goals>
                            <goal>repackage</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>pl.project13.maven</groupId>
                <artifactId>git-commit-id-plugin</artifactId>
                <version>2.2.5</version>
            </plugin>
        </plugins>
    </build>

    <distributionManagement>
        <snapshotRepository>
            <id>eva-snapshots</id>
            <url>https://oss.jfrog.org/artifactory/oss-snapshot-local</url>
        </snapshotRepository>
        <repository>
            <id>eva-releases</id>
            <url>https://oss.jfrog.org/artifactory/oss-release-local</url>
        </repository>
    </distributionManagement>

    <repositories>
        <repository>
          <snapshots>
            <enabled>false</enabled>
          </snapshots>
          <id>eva-releases</id>
          <url>https://oss.jfrog.org/artifactory/libs-release</url>
        </repository>
        <repository>
          <snapshots>
            <enabled>true</enabled>
          </snapshots>
          <id>eva-snapshots</id>
          <url>https://oss.jfrog.org/artifactory/libs-snapshot</url>
        </repository>
    </repositories>
</project>