From 2a73fc0874910a5ca25b1b8bb4cf8cc9bac36a4c Mon Sep 17 00:00:00 2001
From: Orient <orient@inuits.eu>
Date: Wed, 1 Nov 2023 16:03:22 +0100
Subject: [PATCH] adding easyconfigs: Oases-20180312-GCC-12.3.0.eb

---
 .../o/Oases/Oases-20180312-GCC-12.3.0.eb      | 39 +++++++++++++++++++
 1 file changed, 39 insertions(+)
 create mode 100644 easybuild/easyconfigs/o/Oases/Oases-20180312-GCC-12.3.0.eb

diff --git a/easybuild/easyconfigs/o/Oases/Oases-20180312-GCC-12.3.0.eb b/easybuild/easyconfigs/o/Oases/Oases-20180312-GCC-12.3.0.eb
new file mode 100644
index 00000000000..357a853cb97
--- /dev/null
+++ b/easybuild/easyconfigs/o/Oases/Oases-20180312-GCC-12.3.0.eb
@@ -0,0 +1,39 @@
+easyblock = "MakeCp"
+
+name = 'Oases'
+version = '20180312'
+local_commit = '1b4c14c'
+
+homepage = 'http://www.ebi.ac.uk/~zerbino/oases/'
+description = """Oases is a de novo transcriptome assembler designed to produce transcripts from
+ short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly."""
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+# This is taken from the Oases repo to avoid setting git_config in sources
+velvet_commit = '9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3'
+
+sources = [
+    '%s.tar.gz' % local_commit,
+    '%s.tar.gz' % velvet_commit,
+]
+
+source_urls = [
+    'https://github.com/dzerbino/%(namelower)s/archive/',
+    'https://github.com/dzerbino/velvet/archive/',
+]
+
+# listed make targets exclude 'doc' on purpose
+buildopts = ['VELVET_DIR=../velvet-%s cleanobj velvet oases' % velvet_commit]
+parallel = 1
+
+files_to_copy = [(["oases"], 'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.md"]
+
+sanity_check_paths = {
+    'files': ["bin/oases", "LICENSE.txt", "README.md"],
+    'dirs': ["data", "scripts", "src", "doc"]
+}
+
+sanity_check_commands = ['oases --version']
+
+moduleclass = 'bio'