Specifiable options for periodic neighbors calculations #59
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Run data related PyTests | |
permissions: {} | |
env: | |
COLUMNS: 120 | |
on: | |
pull_request: | |
paths: | |
- 'matsciml/datasets/**' | |
- 'matsciml/lightning/data_utils.py' | |
workflow_dispatch: | |
jobs: | |
dataset-pytest: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Create/reuse micromamba env | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
micromamba-version: '1.5.7-0' | |
environment-file: conda.yml | |
init-shell: >- | |
bash | |
cache-environment: true | |
post-cleanup: 'all' | |
generate-run-shell: true | |
- name: Install current version of matsciml | |
run: | | |
pip install . | |
shell: micromamba-shell {0} | |
- name: Install PyTest | |
run: | | |
pip install pytest pytest-dependency pytest-pretty | |
shell: micromamba-shell {0} | |
- name: Print out environment | |
run: | | |
micromamba env export && pip freeze | |
shell: micromamba-shell {0} | |
- name: Run pytest in data | |
run: | | |
pytest -v -m "not lmdb and not slow and not remote_request" ./matsciml/datasets ./matsciml/lightning/ | |
shell: micromamba-shell {0} |