From e3782f63d4da3597a960ee3c204b5bac07c6bf3a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jon=20Haitz=20Legarreta=20Gorro=C3=B1o?= Date: Sun, 23 Jun 2024 12:05:20 -0400 Subject: [PATCH] ENH: Transition project configuration to `pyproject.toml` Transition project configuration to `pyproject.toml`. Used the `setup-py-to-pyproject-toml.py` script in the `ITKModuleTemplate` repository: https://github.com/InsightSoftwareConsortium/ITKModuleTemplate as a starting base, then made manual changes as necessary. Require `itk == 5.4.*` and bump the package to a new major version. --- pyproject.toml | 111 +++++++++++++++++++++++++++++++++++++++++++++++++ setup.py | 54 ------------------------ 2 files changed, 111 insertions(+), 54 deletions(-) create mode 100644 pyproject.toml delete mode 100644 setup.py diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..1777b79 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,111 @@ +[build-system] +requires = ["scikit-build-core"] +build-backend = "scikit_build_core.build" + +[project] +name = "itk-skullstripping" +version = "1.0.0" +description = "Automatic skull-stripping for neuroimage analysis" +readme = "README.rst" +license = {file = "LICENSE"} +authors = [ + { name = "Stefan Bauer", email = "stefan.bauer@istb.unibe.ch" }, +] +keywords = [ + "itk", + "InsightToolkit", + "neuroimaging", + "neuroimaging-analysis", +] +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Developers", + "Intended Audience :: Education", + "Intended Audience :: Healthcare Industry", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: Apache Software License", + "Operating System :: Android", + "Operating System :: MacOS", + "Operating System :: Microsoft :: Windows", + "Operating System :: POSIX", + "Operating System :: Unix", + "Programming Language :: C++", + "Programming Language :: Python", + "Topic :: Scientific/Engineering", + "Topic :: Scientific/Engineering :: Information Analysis", + "Topic :: Scientific/Engineering :: Medical Science Apps.", + "Topic :: Software Development :: Libraries", +] +requires-python = ">=3.8" +dependencies = [ + "itk == 5.4.*", +] + +[project.urls] +Download = "https://github.com/InsightSoftwareConsortium/ITKSkullStrip" +Homepage = "https://github.com/InsightSoftwareConsortium/ITKSkullStrip" + +[tool.scikit-build] +# The versions of CMake to allow. If CMake is not present on the system or does +# not pass this specifier, it will be downloaded via PyPI if possible. An empty +# string will disable this check. +cmake.version = ">=3.16.3" + +# A list of args to pass to CMake when configuring the project. Setting this in +# config or envvar will override toml. See also ``cmake.define``. +cmake.args = [] + +# A table of defines to pass to CMake when configuring the project. Additive. +cmake.define = {} + +# Verbose printout when building. +cmake.verbose = true + +# The build type to use when building the project. Valid options are: "Debug", +# "Release", "RelWithDebInfo", "MinSizeRel", "", etc. +cmake.build-type = "Release" + +# The source directory to use when building the project. Currently only affects +# the native builder (not the setuptools plugin). +cmake.source-dir = "." + +# The versions of Ninja to allow. If Ninja is not present on the system or does +# not pass this specifier, it will be downloaded via PyPI if possible. An empty +# string will disable this check. +ninja.version = ">=1.11" + +# The logging level to display, "DEBUG", "INFO", "WARNING", and "ERROR" are +# possible options. +logging.level = "INFO" + +# Files to include in the SDist even if they are skipped by default. Supports +# gitignore syntax. +sdist.include = [] + +# Files to exclude from the SDist even if they are included by default. Supports +# gitignore syntax. +sdist.exclude = [] + +# A list of license files to include in the wheel. Supports glob patterns. +wheel.license-files = ["LICEN[CS]E*",] + +# Target the platlib or the purelib. If not set, the default is to target the +# platlib if wheel.cmake is true, and the purelib otherwise. +wheel.platlib = "false" + +# If CMake is less than this value, backport a copy of FindPython. Set to 0 +# disable this, or the empty string. +backport.find-python = "3.26.1" + +# Select the editable mode to use. Can be "redirect" (default) or "inplace". +editable.mode = "redirect" + +# Rebuild the project when the package is imported. The build-directory must be +# set. +editable.rebuild = false + +# If set, this will provide a method for scikit-build-core backward compatibility. +minimum-version = "0.8.2" + +# The build directory. Defaults to a temporary directory, but can be set. +build-dir = "build/{wheel_tag}" diff --git a/setup.py b/setup.py deleted file mode 100644 index 6d0cbc6..0000000 --- a/setup.py +++ /dev/null @@ -1,54 +0,0 @@ -# -*- coding: utf-8 -*- -from __future__ import print_function -from os import sys - -try: - from skbuild import setup -except ImportError: - print('scikit-build is required to build from source.', file=sys.stderr) - print('Please run:', file=sys.stderr) - print('', file=sys.stderr) - print(' python -m pip install scikit-build') - sys.exit(1) - -setup( - name='itk-skullstripping', - version='0.1.0', - author='Stefan Bauer', - author_email='stefan.bauer@istb.unibe.ch', - packages=['itk'], - package_dir={'itk': 'itk'}, - download_url=r'https://github.com/InsightSoftwareConsortium/ITKSkullStrip', - description=r'Automatic skull-stripping for neuroimage analysis', - long_description='ITKSkullStrip provides a class to perform automatic' - 'skull-stripping for neuroimage analysis.\n' - 'Please refer to:' - 'Bauer S., Fejes T., Reyes M.,' - '“Skull-Stripping Filter for ITK”, ' - 'Insight Journal, https://hdl.handle.net/10380/3353, 2012.', - classifiers=[ - "License :: OSI Approved :: Apache Software License", - "Programming Language :: Python", - "Programming Language :: C++", - "Development Status :: 4 - Beta", - "Intended Audience :: Developers", - "Intended Audience :: Education", - "Intended Audience :: Healthcare Industry", - "Intended Audience :: Science/Research", - "Topic :: Scientific/Engineering", - "Topic :: Scientific/Engineering :: Medical Science Apps.", - "Topic :: Scientific/Engineering :: Information Analysis", - "Topic :: Software Development :: Libraries", - "Operating System :: Android", - "Operating System :: Microsoft :: Windows", - "Operating System :: POSIX", - "Operating System :: Unix", - "Operating System :: MacOS" - ], - license='Apache', - keywords='ITK InsightToolkit neuroimaging neuroimaging-analysis', - url=r'https://github.com/InsightSoftwareConsortium/ITKSkullStrip', - install_requires=[ - r'itk>=5.2.0.post2' - ] - )