From 583092aefca54bbf8cd968d48947d06aad047b18 Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Thu, 22 Jun 2023 11:38:10 +0200 Subject: [PATCH 01/10] add analysis script + afni_proc script to 6VV2 --- .../pipelines/team_6VV2_AfniProc.simple | 51 +++++++++++++++++++ narps_open/pipelines/team_6VV2_wip.py | 34 +++++++++++++ 2 files changed, 85 insertions(+) create mode 100644 narps_open/pipelines/team_6VV2_AfniProc.simple create mode 100644 narps_open/pipelines/team_6VV2_wip.py diff --git a/narps_open/pipelines/team_6VV2_AfniProc.simple b/narps_open/pipelines/team_6VV2_AfniProc.simple new file mode 100644 index 00000000..1dd8b736 --- /dev/null +++ b/narps_open/pipelines/team_6VV2_AfniProc.simple @@ -0,0 +1,51 @@ +#!/bin/tcsh + +# set subject and group identifiers +set subject = sub-001 +# set data directory +set datadir = /home/jlefortb/narps_open_pipelines/data/original/ds001734 +set expdir = /home/jlefortb/narps_open_pipelines/outputs_6VV2_test_nipype +afni_proc.py \ + -script ${expdir}/proc.${subject}.block \ + -scr_overwrite \ + -subj_id ${subject} \ + -out_dir ${expdir}/${subject}.results.block \ + -dsets ${datadir}/${subject}/func/${subject}_task-MGT_run-01_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-02_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-03_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-04_bold.nii.gz \ + -copy_anat ${datadir}/${subject}/anat/${subject}_T1w.nii.gz \ + -anat_has_skull yes \ + -blocks despike tshift align tlrc volreg blur mask scale regress \ + -despike_new yes \ + -tlrc_base MNI152_T1_2009c+tlrc \ + -tlrc_NL_warp \ + -align_opts_aea \ + -giant_move \ + -cost lpc+ZZ \ + -volreg_align_to MIN_OUTLIER \ + -volreg_tlrc_warp \ + -volreg_align_e2a \ + -blur_in_automask \ + -regress_stim_times \ + ${datadir}/${subject}/func/times+gain.1D \ + ${datadir}/${subject}/func/times+loss.1D \ + -regress_stim_types AM2 \ + -regress_stim_labels \ + GAIN \ + LOSS \ + -regress_basis \ + 'BLOCK(4,1)' \ + -mask_apply anat \ + -regress_motion_per_run \ + -test_stim_files no \ + -regress_opts_3dD \ + -GOFORIT 8 \ + -jobs 6 \ + -regress_censor_motion 0.2 \ + -regress_apply_mot_types demean deriv \ + -regress_censor_first_trs 3 \ + -regress_est_blur_errts \ + -execute + + diff --git a/narps_open/pipelines/team_6VV2_wip.py b/narps_open/pipelines/team_6VV2_wip.py new file mode 100644 index 00000000..c89c7ba1 --- /dev/null +++ b/narps_open/pipelines/team_6VV2_wip.py @@ -0,0 +1,34 @@ + +# last update: June 2023 + +from nipype import Node, Function, Workflow,IdentityInterface +import subprocess +from nipype.interfaces.io import SelectFiles, DataSink +from os.path import abspath +from os.path import join as opj + +# selectfile +templates = {'command_sub1': abspath('outputs_6VV2_test_nipype/6VV2_AfniProc.simple')} +# Create SelectFiles node +files = Node(SelectFiles(templates), + name='files') +# Location of the dataset folder +files.inputs.base_directory = '.' + +# launch afni bash script +def run(command): + import subprocess + subprocess.run([command]) + print("Done") + +afni_proc = Node(Function(input_names=["command"], + output_names=["Adni_proc_ran"], + function=run), + name='afni_proc') + +####### build workflow +wf_run = Workflow(name="Afni_proc_through_nipype") +wf_run.base_dir = '.' +wf_run.connect([(files, afni_proc, [("command_sub1", "command")]) + ]) +wf_run.run() \ No newline at end of file From c391b1d5af6efc682eb5fbc59c786a73181aeb81 Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Fri, 23 Jun 2023 11:58:20 +0200 Subject: [PATCH 02/10] team 6VV2: first level analysis for all subjects --- .../pipelines/team_6VV2_AfniProc.simple | 22 +++-- narps_open/pipelines/team_6VV2_wip.py | 89 ++++++++++++++++--- 2 files changed, 96 insertions(+), 15 deletions(-) mode change 100644 => 100755 narps_open/pipelines/team_6VV2_AfniProc.simple diff --git a/narps_open/pipelines/team_6VV2_AfniProc.simple b/narps_open/pipelines/team_6VV2_AfniProc.simple old mode 100644 new mode 100755 index 1dd8b736..e1196a02 --- a/narps_open/pipelines/team_6VV2_AfniProc.simple +++ b/narps_open/pipelines/team_6VV2_AfniProc.simple @@ -1,10 +1,19 @@ #!/bin/tcsh -# set subject and group identifiers -set subject = sub-001 -# set data directory -set datadir = /home/jlefortb/narps_open_pipelines/data/original/ds001734 -set expdir = /home/jlefortb/narps_open_pipelines/outputs_6VV2_test_nipype +# created by team 6VV2, reproduce by Narps reproducibility team +# creation date: 22 June 2023 +# read and ran by team_6VV2.py script + +# Store arguments +set expdir="$1" +set subject="$2" +set datadir="$3" + +# set expdir = data/results +# set subject = sub-082 +# set datadir = data/original/ds001734 + + afni_proc.py \ -script ${expdir}/proc.${subject}.block \ -scr_overwrite \ @@ -48,4 +57,7 @@ afni_proc.py \ -regress_est_blur_errts \ -execute + + + diff --git a/narps_open/pipelines/team_6VV2_wip.py b/narps_open/pipelines/team_6VV2_wip.py index c89c7ba1..2b502535 100644 --- a/narps_open/pipelines/team_6VV2_wip.py +++ b/narps_open/pipelines/team_6VV2_wip.py @@ -1,4 +1,3 @@ - # last update: June 2023 from nipype import Node, Function, Workflow,IdentityInterface @@ -6,29 +5,99 @@ from nipype.interfaces.io import SelectFiles, DataSink from os.path import abspath from os.path import join as opj +import os + +# define environment +data_dir = "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" +results_dir = "/home/jlefortb/narps_open_pipelines/data/results/" +working_dir = "/home/jlefortb/narps_open_pipelines/" + +# define subject ids +dir_list = os.listdir(data_dir) +# Subject list (to which we will do the analysis) +subject_list = [] +for dirs in dir_list: + if dirs[0:3] == 'sub': + subject_list.append(dirs[-3:]) + + +# Infosource Node - To iterate on subjects + get directoris paths +infosource = Node(interface=IdentityInterface(fields = ['subject_id', 'data_dir', 'results_dir', 'working_dir'], + data_dir = data_dir, + results_dir = results_dir, + working_dir = working_dir), + name = 'infosource') + +infosource.iterables = [('subject_id', subject_list)] + -# selectfile -templates = {'command_sub1': abspath('outputs_6VV2_test_nipype/6VV2_AfniProc.simple')} +templates = {'command': abspath('narps_open/pipelines/team_6VV2_AfniProc.simple')} # Create SelectFiles node files = Node(SelectFiles(templates), name='files') # Location of the dataset folder files.inputs.base_directory = '.' +# create stimuli file the afni way +def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +create_stimuli = Node(Function(input_names=["subject", "data_dir"], + output_names=["Stimuli"], + function=create_stimuli_file), + name='create_stimuli') + + # launch afni bash script -def run(command): - import subprocess - subprocess.run([command]) - print("Done") +def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") -afni_proc = Node(Function(input_names=["command"], +afni_proc = Node(Function(input_names=["command", "results_dir", "subject", "data_dir"], output_names=["Adni_proc_ran"], function=run), name='afni_proc') + + ####### build workflow -wf_run = Workflow(name="Afni_proc_through_nipype") +wf_run = Workflow(base_dir = opj(results_dir, working_dir), name="Afni_proc_through_nipype") wf_run.base_dir = '.' -wf_run.connect([(files, afni_proc, [("command_sub1", "command")]) +wf_run.connect([(infosource, create_stimuli, [('subject_id', 'subject')]), + (infosource, create_stimuli, [("data_dir", "data_dir")]), + (infosource, afni_proc, [('subject_id', 'subject')]), + (infosource, afni_proc, [("results_dir", "results_dir")]), + (infosource, afni_proc, [("data_dir", "data_dir")]), + (files, afni_proc, [("command", "command")]) ]) +# wf_run.write_graph() wf_run.run() \ No newline at end of file From 7706e5c23421bf92d7dcddb47127a39bb2ad7930 Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Fri, 23 Jun 2023 16:54:24 +0200 Subject: [PATCH 03/10] Team 6VV2: Add second level analysis --- ...2_AfniProc.simple => team_6VV2.firstlevel} | 8 +- narps_open/pipelines/team_6VV2.secondlevel | 230 ++++++++++++++++++ narps_open/pipelines/team_6VV2_wip.py | 107 +++++++- 3 files changed, 329 insertions(+), 16 deletions(-) rename narps_open/pipelines/{team_6VV2_AfniProc.simple => team_6VV2.firstlevel} (87%) create mode 100644 narps_open/pipelines/team_6VV2.secondlevel diff --git a/narps_open/pipelines/team_6VV2_AfniProc.simple b/narps_open/pipelines/team_6VV2.firstlevel similarity index 87% rename from narps_open/pipelines/team_6VV2_AfniProc.simple rename to narps_open/pipelines/team_6VV2.firstlevel index e1196a02..e00d4c2a 100755 --- a/narps_open/pipelines/team_6VV2_AfniProc.simple +++ b/narps_open/pipelines/team_6VV2.firstlevel @@ -1,18 +1,16 @@ #!/bin/tcsh -# created by team 6VV2, reproduce by Narps reproducibility team +# created by team 6VV2, reproduced by Narps reproducibility team # creation date: 22 June 2023 # read and ran by team_6VV2.py script +# version afni used by the team : AFNI Version 19.0.01 Tiberius +# version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus # Store arguments set expdir="$1" set subject="$2" set datadir="$3" -# set expdir = data/results -# set subject = sub-082 -# set datadir = data/original/ds001734 - afni_proc.py \ -script ${expdir}/proc.${subject}.block \ diff --git a/narps_open/pipelines/team_6VV2.secondlevel b/narps_open/pipelines/team_6VV2.secondlevel new file mode 100644 index 00000000..c4f79e86 --- /dev/null +++ b/narps_open/pipelines/team_6VV2.secondlevel @@ -0,0 +1,230 @@ +#!/bin/tcsh + +# created by team 6VV2, reproduced by Narps reproducibility team +# creation date: 22 June 2023 +# read and ran by team_6VV2.py script +# version afni used by the team : AFNI Version 19.0.01 Tiberius +# version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus + +# Store arguments +set expdir="$1" + +3dLME -prefix expdir -jobs 4 \ +-model 'group*cond' \ +-SS_type 3 \ +-ranEff '~1' \ +-num_glt 5 \ +-gltLabel 1 'GAIN_indiff' -gltCode 1 'group : 1*indiff cond : 1*GAIN' \ +-gltLabel 2 'GAIN_range' -gltCode 2 'group : 1*range cond : 1*GAIN' \ +-gltLabel 3 'LOSS_indiff' -gltCode 3 'group : 1*indiff cond : 1*LOSS' \ +-gltLabel 4 'LOSS_range' -gltCode 4 'group : 1*range cond : 1*LOSS' \ +-gltLabel 5 'LOSS_range-indiff' -gltCode 5 'group : 1*range -1*indiff cond : 1*LOSS' \ +-dataTable +Subj cond group InputFile \ +001 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/sub-001_GAIN.nii \ +001 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/sub-001_LOSS.nii \ +002 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-002.results.block/sub-002_GAIN.nii \ +002 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-002.results.block/sub-002_LOSS.nii \ +003 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-003.results.block/sub-003_GAIN.nii \ +003 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-003.results.block/sub-003_LOSS.nii \ +004 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-004.results.block/sub-004_GAIN.nii \ +004 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-004.results.block/sub-004_LOSS.nii \ +005 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-005.results.block/sub-005_GAIN.nii \ +005 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-005.results.block/sub-005_LOSS.nii \ +006 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-006.results.block/sub-006_GAIN.nii \ +006 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-006.results.block/sub-006_LOSS.nii \ +008 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-008.results.block/sub-008_GAIN.nii \ +008 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-008.results.block/sub-008_LOSS.nii \ +009 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-009.results.block/sub-009_GAIN.nii \ +009 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-009.results.block/sub-009_LOSS.nii \ +010 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-010.results.block/sub-010_GAIN.nii \ +010 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-010.results.block/sub-010_LOSS.nii \ +011 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-011.results.block/sub-011_GAIN.nii \ +011 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-011.results.block/sub-011_LOSS.nii \ +013 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-013.results.block/sub-013_GAIN.nii \ +013 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-013.results.block/sub-013_LOSS.nii \ +014 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-014.results.block/sub-014_GAIN.nii \ +014 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-014.results.block/sub-014_LOSS.nii \ +015 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-015.results.block/sub-015_GAIN.nii \ +015 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-015.results.block/sub-015_LOSS.nii \ +017 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-017.results.block/sub-017_GAIN.nii \ +017 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-017.results.block/sub-017_LOSS.nii \ +019 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-019.results.block/sub-019_GAIN.nii \ +019 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-019.results.block/sub-019_LOSS.nii \ +020 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-020.results.block/sub-020_GAIN.nii \ +020 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-020.results.block/sub-020_LOSS.nii \ +021 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-021.results.block/sub-021_GAIN.nii \ +021 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-021.results.block/sub-021_LOSS.nii \ +022 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-022.results.block/sub-022_GAIN.nii \ +022 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-022.results.block/sub-022_LOSS.nii \ +024 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-024.results.block/sub-024_GAIN.nii \ +024 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-024.results.block/sub-024_LOSS.nii \ +025 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-025.results.block/sub-025_GAIN.nii \ +025 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-025.results.block/sub-025_LOSS.nii \ +026 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-026.results.block/sub-026_GAIN.nii \ +026 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-026.results.block/sub-026_LOSS.nii \ +027 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-027.results.block/sub-027_GAIN.nii \ +027 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-027.results.block/sub-027_LOSS.nii \ +029 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-029.results.block/sub-029_GAIN.nii \ +029 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-029.results.block/sub-029_LOSS.nii \ +032 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-032.results.block/sub-032_GAIN.nii \ +032 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-032.results.block/sub-032_LOSS.nii \ +033 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-033.results.block/sub-033_GAIN.nii \ +033 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-033.results.block/sub-033_LOSS.nii \ +035 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-035.results.block/sub-035_GAIN.nii \ +035 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-035.results.block/sub-035_LOSS.nii \ +036 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-036.results.block/sub-036_GAIN.nii \ +036 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-036.results.block/sub-036_LOSS.nii \ +037 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-037.results.block/sub-037_GAIN.nii \ +037 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-037.results.block/sub-037_LOSS.nii \ +038 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-038.results.block/sub-038_GAIN.nii \ +038 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-038.results.block/sub-038_LOSS.nii \ +039 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-039.results.block/sub-039_GAIN.nii \ +039 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-039.results.block/sub-039_LOSS.nii \ +040 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-040.results.block/sub-040_GAIN.nii \ +040 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-040.results.block/sub-040_LOSS.nii \ +041 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-041.results.block/sub-041_GAIN.nii \ +041 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-041.results.block/sub-041_LOSS.nii \ +043 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-043.results.block/sub-043_GAIN.nii \ +043 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-043.results.block/sub-043_LOSS.nii \ +044 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-044.results.block/sub-044_GAIN.nii \ +044 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-044.results.block/sub-044_LOSS.nii \ +045 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-045.results.block/sub-045_GAIN.nii \ +045 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-045.results.block/sub-045_LOSS.nii \ +046 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-046.results.block/sub-046_GAIN.nii \ +046 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-046.results.block/sub-046_LOSS.nii \ +047 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-047.results.block/sub-047_GAIN.nii \ +047 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-047.results.block/sub-047_LOSS.nii \ +049 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-049.results.block/sub-049_GAIN.nii \ +049 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-049.results.block/sub-049_LOSS.nii \ +050 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-050.results.block/sub-050_GAIN.nii \ +050 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-050.results.block/sub-050_LOSS.nii \ +051 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-051.results.block/sub-051_GAIN.nii \ +051 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-051.results.block/sub-051_LOSS.nii \ +052 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-052.results.block/sub-052_GAIN.nii \ +052 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-052.results.block/sub-052_LOSS.nii \ +053 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-053.results.block/sub-053_GAIN.nii \ +053 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-053.results.block/sub-053_LOSS.nii \ +054 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-054.results.block/sub-054_GAIN.nii \ +054 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-054.results.block/sub-054_LOSS.nii \ +055 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-055.results.block/sub-055_GAIN.nii \ +055 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-055.results.block/sub-055_LOSS.nii \ +056 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-056.results.block/sub-056_GAIN.nii \ +056 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-056.results.block/sub-056_LOSS.nii \ +057 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-057.results.block/sub-057_GAIN.nii \ +057 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-057.results.block/sub-057_LOSS.nii \ +058 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-058.results.block/sub-058_GAIN.nii \ +058 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-058.results.block/sub-058_LOSS.nii \ +059 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-059.results.block/sub-059_GAIN.nii \ +059 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-059.results.block/sub-059_LOSS.nii \ +060 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-060.results.block/sub-060_GAIN.nii \ +060 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-060.results.block/sub-060_LOSS.nii \ +061 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-061.results.block/sub-061_GAIN.nii \ +061 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-061.results.block/sub-061_LOSS.nii \ +062 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-062.results.block/sub-062_GAIN.nii \ +062 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-062.results.block/sub-062_LOSS.nii \ +063 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-063.results.block/sub-063_GAIN.nii \ +063 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-063.results.block/sub-063_LOSS.nii \ +064 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-064.results.block/sub-064_GAIN.nii \ +064 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-064.results.block/sub-064_LOSS.nii \ +066 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-066.results.block/sub-066_GAIN.nii \ +066 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-066.results.block/sub-066_LOSS.nii \ +067 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-067.results.block/sub-067_GAIN.nii \ +067 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-067.results.block/sub-067_LOSS.nii \ +068 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-068.results.block/sub-068_GAIN.nii \ +068 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-068.results.block/sub-068_LOSS.nii \ +069 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-069.results.block/sub-069_GAIN.nii \ +069 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-069.results.block/sub-069_LOSS.nii \ +070 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-070.results.block/sub-070_GAIN.nii \ +070 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-070.results.block/sub-070_LOSS.nii \ +071 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-071.results.block/sub-071_GAIN.nii \ +071 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-071.results.block/sub-071_LOSS.nii \ +072 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-072.results.block/sub-072_GAIN.nii \ +072 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-072.results.block/sub-072_LOSS.nii \ +073 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-073.results.block/sub-073_GAIN.nii \ +073 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-073.results.block/sub-073_LOSS.nii \ +074 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-074.results.block/sub-074_GAIN.nii \ +074 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-074.results.block/sub-074_LOSS.nii \ +075 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-075.results.block/sub-075_GAIN.nii \ +075 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-075.results.block/sub-075_LOSS.nii \ +076 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-076.results.block/sub-076_GAIN.nii \ +076 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-076.results.block/sub-076_LOSS.nii \ +077 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-077.results.block/sub-077_GAIN.nii \ +077 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-077.results.block/sub-077_LOSS.nii \ +079 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-079.results.block/sub-079_GAIN.nii \ +079 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-079.results.block/sub-079_LOSS.nii \ +080 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-080.results.block/sub-080_GAIN.nii \ +080 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-080.results.block/sub-080_LOSS.nii \ +081 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-081.results.block/sub-081_GAIN.nii \ +081 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-081.results.block/sub-081_LOSS.nii \ +082 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-082.results.block/sub-082_GAIN.nii \ +082 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-082.results.block/sub-082_LOSS.nii \ +083 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-083.results.block/sub-083_GAIN.nii \ +083 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-083.results.block/sub-083_LOSS.nii \ +084 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-084.results.block/sub-084_GAIN.nii \ +084 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-084.results.block/sub-084_LOSS.nii \ +085 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-085.results.block/sub-085_GAIN.nii \ +085 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-085.results.block/sub-085_LOSS.nii \ +087 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-087.results.block/sub-087_GAIN.nii \ +087 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-087.results.block/sub-087_LOSS.nii \ +090 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-090.results.block/sub-090_GAIN.nii \ +090 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-090.results.block/sub-090_LOSS.nii \ +092 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-092.results.block/sub-092_GAIN.nii \ +092 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-092.results.block/sub-092_LOSS.nii \ +093 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-093.results.block/sub-093_GAIN.nii \ +093 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-093.results.block/sub-093_LOSS.nii \ +094 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-094.results.block/sub-094_GAIN.nii \ +094 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-094.results.block/sub-094_LOSS.nii \ +095 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-095.results.block/sub-095_GAIN.nii \ +095 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-095.results.block/sub-095_LOSS.nii \ +096 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-096.results.block/sub-096_GAIN.nii \ +096 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-096.results.block/sub-096_LOSS.nii \ +098 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-098.results.block/sub-098_GAIN.nii \ +098 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-098.results.block/sub-098_LOSS.nii \ +099 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-099.results.block/sub-099_GAIN.nii \ +099 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-099.results.block/sub-099_LOSS.nii \ +102 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-102.results.block/sub-102_GAIN.nii \ +102 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-102.results.block/sub-102_LOSS.nii \ +103 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-103.results.block/sub-103_GAIN.nii \ +103 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-103.results.block/sub-103_LOSS.nii \ +104 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-104.results.block/sub-104_GAIN.nii \ +104 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-104.results.block/sub-104_LOSS.nii \ +105 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-105.results.block/sub-105_GAIN.nii \ +105 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-105.results.block/sub-105_LOSS.nii \ +106 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-106.results.block/sub-106_GAIN.nii \ +106 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-106.results.block/sub-106_LOSS.nii \ +107 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-107.results.block/sub-107_GAIN.nii \ +107 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-107.results.block/sub-107_LOSS.nii \ +108 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-108.results.block/sub-108_GAIN.nii \ +108 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-108.results.block/sub-108_LOSS.nii \ +109 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-109.results.block/sub-109_GAIN.nii \ +109 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-109.results.block/sub-109_LOSS.nii \ +110 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-110.results.block/sub-110_GAIN.nii \ +110 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-110.results.block/sub-110_LOSS.nii \ +112 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-112.results.block/sub-112_GAIN.nii \ +112 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-112.results.block/sub-112_LOSS.nii \ +113 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-113.results.block/sub-113_GAIN.nii \ +113 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-113.results.block/sub-113_LOSS.nii \ +114 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-114.results.block/sub-114_GAIN.nii \ +114 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-114.results.block/sub-114_LOSS.nii \ +115 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-115.results.block/sub-115_GAIN.nii \ +115 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-115.results.block/sub-115_LOSS.nii \ +116 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-116.results.block/sub-116_GAIN.nii \ +116 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-116.results.block/sub-116_LOSS.nii \ +117 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-117.results.block/sub-117_GAIN.nii \ +117 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-117.results.block/sub-117_LOSS.nii \ +118 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-118.results.block/sub-118_GAIN.nii \ +118 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-118.results.block/sub-118_LOSS.nii \ +119 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-119.results.block/sub-119_GAIN.nii \ +119 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-119.results.block/sub-119_LOSS.nii \ +120 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-120.results.block/sub-120_GAIN.nii \ +120 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-120.results.block/sub-120_LOSS.nii \ +121 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-121.results.block/sub-121_GAIN.nii \ +121 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-121.results.block/sub-121_LOSS.nii \ +123 GAIN indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-123.results.block/sub-123_GAIN.nii \ +123 LOSS indifference /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-123.results.block/sub-123_LOSS.nii \ +124 GAIN range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-124.results.block/sub-124_GAIN.nii \ +124 LOSS range /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-124.results.block/sub-124_LOSS.nii + + + diff --git a/narps_open/pipelines/team_6VV2_wip.py b/narps_open/pipelines/team_6VV2_wip.py index 2b502535..64525be1 100644 --- a/narps_open/pipelines/team_6VV2_wip.py +++ b/narps_open/pipelines/team_6VV2_wip.py @@ -1,16 +1,24 @@ # last update: June 2023 - from nipype import Node, Function, Workflow,IdentityInterface import subprocess from nipype.interfaces.io import SelectFiles, DataSink from os.path import abspath from os.path import join as opj import os +import pathlib + +######################################################################## +################## FIRST LEVEL ANALYSIS FOR TEAM 6VV2 ################## +######################################################################## -# define environment +# define environment for first level analysis data_dir = "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" -results_dir = "/home/jlefortb/narps_open_pipelines/data/results/" -working_dir = "/home/jlefortb/narps_open_pipelines/" +results_dir = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/" + +path = pathlib.Path(results_dir) +path.mkdir(parents=True, exist_ok=True) + + # define subject ids dir_list = os.listdir(data_dir) @@ -22,16 +30,15 @@ # Infosource Node - To iterate on subjects + get directoris paths -infosource = Node(interface=IdentityInterface(fields = ['subject_id', 'data_dir', 'results_dir', 'working_dir'], +infosource = Node(interface=IdentityInterface(fields = ['subject_id', 'data_dir', 'results_dir'], data_dir = data_dir, - results_dir = results_dir, - working_dir = working_dir), + results_dir = results_dir), name = 'infosource') infosource.iterables = [('subject_id', subject_list)] -templates = {'command': abspath('narps_open/pipelines/team_6VV2_AfniProc.simple')} +templates = {'command': abspath('narps_open/pipelines/team_6VV2.firstlevel')} # Create SelectFiles node files = Node(SelectFiles(templates), name='files') @@ -83,14 +90,13 @@ def run(command, results_dir, subject, data_dir): print("Done") afni_proc = Node(Function(input_names=["command", "results_dir", "subject", "data_dir"], - output_names=["Adni_proc_ran"], + output_names=["Adni_1stLevel"], function=run), name='afni_proc') - ####### build workflow -wf_run = Workflow(base_dir = opj(results_dir, working_dir), name="Afni_proc_through_nipype") +wf_run = Workflow(base_dir = results_dir, name="Afni_proc_through_nipype") wf_run.base_dir = '.' wf_run.connect([(infosource, create_stimuli, [('subject_id', 'subject')]), (infosource, create_stimuli, [("data_dir", "data_dir")]), @@ -100,4 +106,83 @@ def run(command, results_dir, subject, data_dir): (files, afni_proc, [("command", "command")]) ]) # wf_run.write_graph() +wf_run.run() + + +######################################################################## +################## SECOND LEVEL ANALYSIS FOR TEAM 6VV2 ################# +######################################################################## + +# define environment for second level analysis +data_dir_firstlevel = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/" +results_dir_second_level = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/secondlevel/" +path = pathlib.Path(results_dir_second_level) +path.mkdir(parents=True, exist_ok=True) + +# Infosource Node - To iterate on subjects + get directoris paths +infosource = Node(interface=IdentityInterface(fields = ['results_dir_second_level'], + results_dir_second_level = results_dir_second_level), + name = 'infosource') + +templates = {'command': abspath('narps_open/pipelines/team_6VV2.secondlevel')} +# Create SelectFiles node +files = Node(SelectFiles(templates), + name='files') +# Location of the dataset folder +files.inputs.base_directory = '.' + + +# create datatable for afni_proc.py script +def create_dataTable(data_dir_firstlevel): + # subject not analyzed by the team, see pipelines information for more details + not_included = ["016","018","030","088","089","100"] + df_participant = pd.read_csv("data/original/ds001734/participants.tsv", sep="\t") + # replace equalRange and equalIndifference with range and indifference + df_participant["group"] = [i[5:].lower() for i in df_participant["group"].values] + df_participant["participant_id"] = [i[-3:] for i in df_participant["participant_id"].values] + df = pd.DataFrame(columns=["Subj", "cond", "group", "InputFile"]) + for sub in df_participant["participant_id"].values: + if sub in not_included: + continue + size_df = len(df) + sub_group = df_participant["group"][df_participant["participant_id"]==sub].values[0] + df.loc[size_df] = [sub, "GAIN", sub_group, "{}sub-{}/sub-{}_GAIN.nii".format(data_dir_firstlevel, sub, sub)] + size_df = len(df) + df.loc[size_df] = [sub, "LOSS", sub_group, "{}sub-{}/sub-{}_LOSS.nii".format(data_dir_firstlevel, sub, sub)] + dataTable = df + + """ + Should look like + + Subj cond group InputFile \ + 001 GAIN indiff results/sub-001.results.block/sub-001_GAIN.nii \ + 001 LOSS indiff results/sub-001.results.block/sub-001_LOSS.nii \ + … + 124 GAIN range results/sub-124.results.block/sub-124_GAIN.nii \ + 124 LOSS range results/sub-124.results.block/sub-124_LOSS.nii + + + """ + return dataTable + + +# launch afni bash script +def run_secondlevel(command, results_dir_second_level): + import subprocess + subprocess.run([command, results_dir_second_level]) + print("Done") + +afni_proc = Node(Function(input_names=["command", "results_dir_second_level"], + output_names=["Adni_2ndLevel"], + function=run_secondlevel), + name='afni_proc') + + +####### build workflow +wf_run = Workflow(base_dir = results_dir_second_level, name="Afni_proc_2nd_level_through_nipype") +wf_run.base_dir = '.' +wf_run.connect([(infosource, afni_proc, [("results_dir_second_level", "results_dir_second_level")]), + (files, afni_proc, [("command", "command")]) + ]) +# wf_run.write_graph() wf_run.run() \ No newline at end of file From c70fb39de5962c63adaeabcefd51bc946d301eb8 Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Thu, 6 Jul 2023 14:17:46 +0200 Subject: [PATCH 04/10] commenting --- narps_open/pipelines/team_6VV2.firstlevel | 3 +- narps_open/pipelines/team_6VV2.secondlevel | 4 +- narps_open/pipelines/team_6VV2_wip.py | 11 +- narps_open/pipelines/team_I9D6.firstlevel | 175 +++++++++++++++++++++ narps_open/pipelines/team_I9D6_wip.py | 10 ++ 5 files changed, 200 insertions(+), 3 deletions(-) create mode 100644 narps_open/pipelines/team_I9D6.firstlevel create mode 100644 narps_open/pipelines/team_I9D6_wip.py diff --git a/narps_open/pipelines/team_6VV2.firstlevel b/narps_open/pipelines/team_6VV2.firstlevel index e00d4c2a..f76890c7 100755 --- a/narps_open/pipelines/team_6VV2.firstlevel +++ b/narps_open/pipelines/team_6VV2.firstlevel @@ -5,8 +5,9 @@ # read and ran by team_6VV2.py script # version afni used by the team : AFNI Version 19.0.01 Tiberius # version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus +# Last update: June 2023 -# Store arguments +# Store arguments (directory where to store results, subjects list, directory where data are stored) set expdir="$1" set subject="$2" set datadir="$3" diff --git a/narps_open/pipelines/team_6VV2.secondlevel b/narps_open/pipelines/team_6VV2.secondlevel index c4f79e86..79846071 100644 --- a/narps_open/pipelines/team_6VV2.secondlevel +++ b/narps_open/pipelines/team_6VV2.secondlevel @@ -5,8 +5,10 @@ # read and ran by team_6VV2.py script # version afni used by the team : AFNI Version 19.0.01 Tiberius # version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus +# Last update: June 2023 -# Store arguments + +# Store arguments (directory where to store results) set expdir="$1" 3dLME -prefix expdir -jobs 4 \ diff --git a/narps_open/pipelines/team_6VV2_wip.py b/narps_open/pipelines/team_6VV2_wip.py index 64525be1..7c9bf2d3 100644 --- a/narps_open/pipelines/team_6VV2_wip.py +++ b/narps_open/pipelines/team_6VV2_wip.py @@ -1,4 +1,13 @@ -# last update: June 2023 +''' +created by team 6VV2, reproduced by Narps reproducibility team +creation date: 22 June 2023 +needs script "team_6VV2.firstlevel" and "team_6VV2.secondlevel" +the team : AFNI Version 19.0.01 Tiberius +version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus +Participants not included 016, 018, 030, 088, 089, 100 +Last update: June 2023 +''' + from nipype import Node, Function, Workflow,IdentityInterface import subprocess from nipype.interfaces.io import SelectFiles, DataSink diff --git a/narps_open/pipelines/team_I9D6.firstlevel b/narps_open/pipelines/team_I9D6.firstlevel new file mode 100644 index 00000000..438a85ae --- /dev/null +++ b/narps_open/pipelines/team_I9D6.firstlevel @@ -0,0 +1,175 @@ +#!/bin/tcsh + +# created by team I9D6, reproduced by Narps reproducibility team +# creation date: 22 June 2023 +# read and ran by team_I9D6.py script +# version afni used by the team : AFNI Version 19.0.24 Tiberius +# version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus +# Last update: June 2023 + +# Store arguments (directory where to store results, subjects list, directory where data are stored) +set expdir="$1" +set subject="$2" +set datadir="$3" + +""" +https://osf.io/bvs2f + +Brain extraction and non-linear registration to the MNI152_2009 template were done with AFNI's @SSwarper script. Prior to brain extraction, the images were deobliqued with 3dWarp and intensity normalized with 3dUnifize, so @SSwarper was run with the -unifize_off flag. +1. AFNI's 3dWarp was used to apply the obliquity transformation to the T1's, needed to keep AFNI and FreeSurfer in register. +2. AFNI's 3dUnifize was run to uniform-ize the T1w volume intensities, to provide assistance to FreeSurfer. +3. Freesurfer processing of anatomical T1w datasets, to define white matter and other ROIs +4. AFNI's @SSwarper was applied to skull-strip each anatomical and to estimate a nonlinear warp to a standard space target (MNI152NLin2009cAsym). +5. AFNI's afni_proc.py blocks: +tshift: slice timing alignment on volumes, +align: linear affine alignment of EPI and anatomy, +tlrc: warp anat to standard space (using @SSwarper results), +volreg: EPI registration, plus concatenating and applying 'align' and 'tlrc' transformations to produce the final EPI time series in MNI space, +mask: create a 'brain' mask from the EPI data for later use, +scale: voxelwise scaling of each EPI run mean to 100, for each voxel , +regress: time series regression analysis. + +Freesurfer segmentation with -3T flag: +recon-all -all -sd $cwd -subjid $sid -3T \ + -i $indata_root/$sid/${sid}_T1w-deobl_nu.nii.gz + +The utilized “tissue classes” were specific ROIs selected from the list labeled by FS. These were the ROIs defined to be WM in AFNI’s @SUMA_renumber_FS: Left-Cerebral-White-Matter, Left-Cerebellum-White-Matter, Right-Cerebral-White-Matter, Right-Cerebellum-White-Matter, WM-hypointensities, CC_Posterior, CC_Mid_Posterior, CC_Central, CC_Mid_Anterior, CC_Anterior. (This WM mask was later used for the ANATICOR calculations.) + +Slice time correction done by AFNI's 3dTshift as setup by the tshift block in the afni_proc.py command, which uses 5th order Lagrange polynomial interpolation. This was done before motion correction. Slice #0 was used for the reference, to keep nominal volume times in sync with stimulus timing. + +Motion correction was done using 3dvolreg using 6-parameter rigid transformations. + +The reference scan is the “MIN_OUTLIER” volume (volume in the time series with fewest number of outliers detected using 3dToutcount, pre-motion correction, to minimize risk of selecting a high-motion time point). + +The similarity metric is weighted least squares, to determine the 6 rigid body motion parameters and the accompanying coordinate transformation matrix for each time point. + +Interpolation type is “cubic” when determining the motion parameters. The interpolation type of "wsinc5" (weighted sinc, ±5 voxel neighborhood) was applied to the EPI when the combined transformation to MNI space was applied: the EPI➝ref➝anat➝(NL)MNI template transformations were combined to allow a single interpolation from the original EPI time series to the MNI analysis space. + +Function-to-structure (T1w) registration done by AFNI's align_epi_anat.py script as setup by the align block in afni_proc.py, with these additional parameters: -giant_move -cost lpc+ZZ -check_flip. These options specify to search a larger range of rotations (giant_move), use a constrained local Pearson correlation cost function (lpc+ZZ: https://www.ncbi.nlm.nih.gov/pubmed/18976717), and check to see if the EPI has been flipped relative to the anatomical (this happens 😟). This transformation is a 12 parameter linear affine matrix. + +T1-weighted volumes were first deobliqued and intensity normalized before brain extraction and non-linear registration to the MNI152_2009 template MNI152NLin2009cAsym space) were done with AFNI's @SSwarper script. Both the subject T1 and template volumes were at 1 mm resolution. +@SSwarper -input \ + $indata_root/$sid/${sid}_T1w-deobl_nu.nii.gz \ + -unifize_off \ + -base MNI152_2009_template_SSW.nii.gz \ + -subid $sid \ + -odir . + +Here are the steps in the @SSwarper script: + #1: Uniform-ize the T1-weighted volume intensity (3dUnifize) - skipped (already done) + #2: Strip the skull (3dSkullStrip), with mildly aggressive settings. + #3: Nonlinearly warp (3dQwarp) the result from #1 to the skull-on + template, driving the warping to a medium level of refinement. + #4: Use a slightly dilated brain mask from the template to + crop off any non-brain tissue resulting from #3 (3dcalc). + #5: Warp the output of #4 back to original anatomical space, + along with the template brain mask, and combine those + with the output of #2 to get a better skull-stripped + result in original space (3dNwarpApply and 3dcalc). + #6: Restart the nonlinear warping, registering the output + of #5 to the skull-off template brain volume (3dQwarp). + #7: Use @snapshot_volreg3 to make pretty pictures for QC. +The nonlinear warp computed in 3dQwarp (and applied to the EPI data in 3dNwarpApply) is computed incrementally using a set of overlapping 3D polynomial patches. As the patches are refined, more parameters are introduced. However, the many thousands of parameters defining the polynomial patches are not saved; rather, the warp is stored as a non-parametric displacement field in a 3-volume NiFTI datasets. Program 3dNwarpApply uses such a warp dataset to transform other 3D datasets in the same fashion (and can catenate warps and matrices on-the-fly); its default interpolation method is weighted sinc, but lower order methods are also available (e.g., NN for warping ROI labels). + +We used AFNI's 3dUnifize for T1w intensity correction. Command: + 3dUnifize -GM -clfrac 0.4 -Urad 30 \ + -input ${sid}_T1w-deobl.nii.gz \ + -prefix ${sid}_T1w-deobl_nu.nii.gz + +We ran Freesurfer with the -3T flag which runs nu intensity correction, in the creation of a white matter mask for each subject. + +The “scale” block was utilized in afni_proc.py, which scales the mean of each EPI voxel time series to 100; that is, the voxels are scaled separately, not the volumes as a whole. The fluctuations in the resulting time series have an interpretation of local (BOLD) % signal change. Values are truncated to a range of [0,200]. + +Nuisance regression was done including the motion parameters and local white matter voxelwise regressors. +The 6 rigid-body motion parameters (estimated in 3dvolreg) were included, one set of 6 per run. + +Local white matter tissue signals were were included in the regression model set up by the afni_proc.py script as specified by the flags “-regress_anaticor_fast” and "-regress_anaticor_fwhm 20”. The local signal from the eroded white matter is computed summing each EPI volume over the nearby white matter voxels weighted by a Gaussian decay, in this case with a full width half max of 20 mm (https://www.ncbi.nlm.nih.gov/pubmed/20420926). Each EPI voxel time series thus gets a separate ANATICOR regressor, in addition to the usual (global) motion parameter regressors. (The time series regression analysis program 3dREMLfit can deal with voxelwise regressors.) + +Censoring is done with AFNI as part of the regress step +Criteria: ++ the Euclidean norm (enorm) of the 6 motion parameters first temporal differences is calculated, and where enorm is greater than a threshold (here, 0.3 ~mm), both that volume and the preceding one are censored. ++ the fraction of outliers in each (automasked) volume is calculated, and where the fraction is greater than a threshold (here, 0.05), that volume is censored from the regression model. +In most cases, censoring due to excessive “outliers” in a volume coincides with censoring due to excessive motion -- but not always. Both methods are used to be safe. + +No spatial smoothing was applied here during single subject processing. + +Spatial smoothing was applied later (to the individual subject-level effect size estimates “betas”) as part of AFNI's ETAC form of running 3dttest++ for group analysis and clustering, where it applied several different blurs (here, 0, 4, 6, and 8mm Gaussian FWHM applied inside the brain mask using an iterative approach), before combining those results to maintain an overall FPR. + +The list of subjects with number of retained TRs, percent of time points censored, and list of censored TRs is available in the spreadsheet here: +https://docs.google.com/spreadsheets/d/1_T_Y7xaaTV4O-AyUd-kN4hACCMJOAYuUFDqSy1WOcTw/edit?usp=sharing +The subjects not including in the group analysis were those shown in the output of: + gen_ss_review_table.py \ + -outlier_sep space \ + -report_outliers 'censor fraction' GE 0.1 \ + -report_outliers 'average censored motion' GE 0.1 \ + -report_outliers 'max censored displacement' GE 8 \ + -infiles sub*/s*.results/out.ss*.txt + + +We modelled the task using a canonical (only) basis function, AFNI's BLOCK model (an integrated gamma variate function), using response times as the individual event durations. HRF peaks varied, according to the convolution with the response times. +We used the following independent variables: +- for trials with a response, BLOCK, with duration equal to response time, and amplitude modulation parameters (leading to automatically generated parametrically modulated regressors) for gain and loss in dollars +- for trials without a response, BLOCK, with duration of 4 s (the total period in which a subject could respond) +Nuisance regressors: +- A Gaussian weighted local neighborhood of white matter (ANATICOR), leading to 1 voxel-dependent regressor +- Six motion parameters (degrees and mm) per run +- The baseline and temporal drift was modeled as Legendre polynomials of order 4, including 5 regressors per run. +- Generalized linear least squares (GLSQ) regression was carried out, with the temporal noise autocovariance modeled with voxelwise ARMA(1,1) parameters estimated from the GLSQ residuals at each voxel (i.e, REML). + + +The 9 hypotheses were evaluated with 4 group-level whole-brain two-sided t-tests and 1 between group test. The 4 whole-brain tests will be: + - Parametric effect of gain in the equal indifference group + - Parametric effect of gain in the equal range group + - Parametric effect of loss in the equal indifference group + - Parametric effect of loss in the equal range group +The between group test was a two-sided test of difference in the parametric effect of loss between the indifference group and the equal range group. + +""" + +afni_proc.py \ + -script ${expdir}/proc.${subject}.block \ + -scr_overwrite \ + -subj_id ${subject} \ + -out_dir ${expdir}/${subject}.results.block \ + -dsets ${datadir}/${subject}/func/${subject}_task-MGT_run-01_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-02_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-03_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-04_bold.nii.gz \ + -copy_anat ${datadir}/${subject}/anat/${subject}_T1w.nii.gz \ + -anat_has_skull yes \ + -blocks tshift align tlrc volreg mask scale regress \ + -despike_new yes \ + -tlrc_base MNI152_T1_2009c+tlrc \ + -tlrc_NL_warp \ + -align_opts_aea \ + -giant_move \ + -cost lpc+ZZ \ + -volreg_align_to MIN_OUTLIER \ + -volreg_tlrc_warp \ + -volreg_align_e2a \ + -blur_in_automask \ + -regress_stim_times \ + ${datadir}/${subject}/func/times+gain.1D \ + ${datadir}/${subject}/func/times+loss.1D \ + -regress_stim_types AM2 \ + -regress_stim_labels \ + GAIN \ + LOSS \ + -regress_basis \ + 'BLOCK(4,1)' \ + -mask_apply anat \ + -regress_motion_per_run \ + -test_stim_files no \ + -regress_opts_3dD \ + -GOFORIT 8 \ + -jobs 6 \ + -regress_censor_motion 0.2 \ + -regress_apply_mot_types demean deriv \ + -regress_censor_first_trs 3 \ + -regress_est_blur_errts \ + -execute + + + + + diff --git a/narps_open/pipelines/team_I9D6_wip.py b/narps_open/pipelines/team_I9D6_wip.py new file mode 100644 index 00000000..39db821c --- /dev/null +++ b/narps_open/pipelines/team_I9D6_wip.py @@ -0,0 +1,10 @@ +''' +created by team I9D6, reproduced by Narps reproducibility team +creation date: 27 June 2023 +needs script "team_I9D6.firstlevel" and "team_I9D6.secondlevel" +the team : AFNI Version 19.0.24 Tiberius +version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus +Participants not included 016 +Last update: June 2023 +''' + From 54153acbf060c538f820c88df253e2249c6b8770 Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Tue, 7 Nov 2023 14:24:35 +0100 Subject: [PATCH 05/10] add last updates team 6VV2 repro afni --- narps_open/pipelines/team_6VV2.firstlevel | 8 ++++++-- notes.txt | 1 + 2 files changed, 7 insertions(+), 2 deletions(-) create mode 100644 notes.txt diff --git a/narps_open/pipelines/team_6VV2.firstlevel b/narps_open/pipelines/team_6VV2.firstlevel index f76890c7..f536b331 100755 --- a/narps_open/pipelines/team_6VV2.firstlevel +++ b/narps_open/pipelines/team_6VV2.firstlevel @@ -57,6 +57,10 @@ afni_proc.py \ -execute +# extract beta values +3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] +3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] - - +# convert BRIK to nii +3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc +3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc \ No newline at end of file diff --git a/notes.txt b/notes.txt new file mode 100644 index 00000000..8260c233 --- /dev/null +++ b/notes.txt @@ -0,0 +1 @@ +datalad get ./data/original/ds001734/sub-001 From aeff14b31eef619a6d36e97ee3050a02a639c08e Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Mon, 12 Feb 2024 10:25:24 +0100 Subject: [PATCH 06/10] update 6VV2_wip --- ...82c0418a5dc016fe0334a2c8f6_unfinished.json | 25 + .../_subject_id_001/afni_proc/_inputs.pklz | Bin 0 -> 303 bytes .../_subject_id_001/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 23 + .../_0x4b88c28a232fe352aaa3991b95b3cbfc.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_001/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2851 bytes .../_subject_id_002/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_002/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2890 bytes .../_0x828dba5362000ae4a98c5e5894950bc2.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_002/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x1672a71e029a1fae37c7d82d60d10354.json | 25 + .../_subject_id_003/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_003/afni_proc/_node.pklz | Bin 0 -> 1291 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2539 bytes .../_0xf39e16cd9b4e465ab9a6df01d1bca5e0.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_003/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x7bd12589dcfbb82daba15bb9e5b941b8.json | 25 + .../_subject_id_004/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_004/afni_proc/_node.pklz | Bin 0 -> 1291 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2545 bytes .../_0x332b1c6e5d406505a41b9862da82d3af.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_004/create_stimuli/_node.pklz | Bin 0 -> 1534 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x66adc730aec8306bd719310c7f023b50.json | 25 + .../_subject_id_005/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_005/afni_proc/_node.pklz | Bin 0 -> 1295 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2536 bytes .../_0x53e9f2ab37b004ea8655a036430b95db.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_005/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x21ebbfe5fc586de50f78d96b027cb04e.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_006/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0x082381b5999def21113ab7bd5970f444.json | 25 + .../_subject_id_008/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_008/afni_proc/_node.pklz | Bin 0 -> 1296 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2546 bytes .../_0x2e8468cb3d727bd5c1802195995c0551.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_008/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0xcfdc4c461ca3e89691c0a1b184ef4a41.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_009/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2851 bytes .../_0xdc77add13a0e2b01bd236484f756ff9f.json | 25 + .../_subject_id_010/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_010/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2537 bytes .../_0xc7bcfd952bdeda6f1ac3267d3fe40efe.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_010/create_stimuli/_node.pklz | Bin 0 -> 1533 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0xcb98c1c3f8ba2766789a33a20180999b.json | 25 + .../_subject_id_011/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_011/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0x562dae15b2074b2c0630186f6a706e0a.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_011/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_0x78ea16f74f40a91d4904afe87bb2cb05.json | 25 + .../_subject_id_013/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_013/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0xdef586efabfbe19760f7ee91bc0fdaea.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_013/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x803ed4427ac75dd2491e4cb41b84f2c2.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_014/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0xe09c3b6f1c6fa35a9899bf0bfc04377e.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_015/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0xf78a12fdff76772b70f5f757c88ec718.json | 25 + .../_subject_id_016/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_016/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2542 bytes .../_0x4506aaa53352c49a81e65aa0d9ecb066.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_016/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x75135d983f2d910c596b1534afaa6e07.json | 25 + .../_subject_id_017/afni_proc/_inputs.pklz | Bin 0 -> 303 bytes .../_subject_id_017/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0xe07660d4ef5ef0a4815e084218fc7a84.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_017/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_subject_id_018/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_018/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2890 bytes .../_0x96527a62190622c3c36f1d18057ebd4a.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_018/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x3ed5fc939177982773f4a3de7aade6e2.json | 25 + .../_subject_id_019/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_019/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0xefa4ecc73cd1207b7a19ccf8c641bc92.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_019/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0xf15640574a5fa3ee862867dd48258cc4.json | 25 + .../_subject_id_020/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_020/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2543 bytes .../_0x87f22be45611d46a5e5253005a5c607a.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_020/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x842d0ffe2f7891e4fcd9c15e70ad76dd.json | 25 + .../_subject_id_021/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_021/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2545 bytes .../_0x2035f23ddf2da6815786e483128949d6.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_021/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0x034759bf09ede3f732a354f3b1727e10.json | 25 + .../_subject_id_022/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_022/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0x27d39a75b3df3dee233986845c0d00be.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_022/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0xae2900a421e5ae12940c8a7d83be362e.json | 25 + .../_subject_id_024/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_024/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2540 bytes .../_0x79dfe99ab4a5e6f1d1e008e0b6056d0b.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_024/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0x9e31053bcf1e12b25fec06cca8b3f6ca.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_025/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2841 bytes .../_0x0f44349e272f010e5b6386c8c9482953.json | 25 + .../_subject_id_026/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_026/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2540 bytes .../_0xb821996742c1404f35791ed54fd21605.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_026/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0x8535316d7b3edd0392f612e06a6f297b.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_027/create_stimuli/_node.pklz | Bin 0 -> 1541 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0xe48364c65e06397ae3b8a04b1740225f.json | 25 + .../_subject_id_029/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_029/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2546 bytes .../_0xcdd8a1e9a8f4f233f0947d5ed7419b67.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_029/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x946474cb872f3497e0a44b107f0aeecf.json | 25 + .../_subject_id_030/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_030/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0x8f5cb2646fc2fa8424e53b22f26bb048.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_030/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0xe5d7c01301c9bbcd5164eceded2c27f3.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_032/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_subject_id_033/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_033/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2887 bytes .../_0x6c9baf9c6d70dfe0158fb11e86d9d85f.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_033/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x60ea3b92aac3c9ed6c62016a8b7c7fe5.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_035/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x992d4ff2428428edc7b2ca38bb86dc65.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_036/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0xcc21dffa6fe1cce80b5314a60c3ff5e6.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_037/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x9f1fb559a7f70b06e79e2ceeed7c7503.json | 25 + .../_subject_id_038/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_038/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2547 bytes .../_0x8020b887b800fb3211deeaa3d63de33d.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_038/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0xab1371e1988d24b472db63e18ff73eb2.json | 25 + .../_subject_id_039/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_039/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0xc0ecaca3746a356c8aab463303ba4948.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_039/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_subject_id_040/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_040/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2890 bytes .../_0x067613127eb9873042069b2d00551fe0.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_040/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_subject_id_041/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_041/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2892 bytes .../_0xa892d02df6f04aa55c6f92705c256a0d.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_041/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2843 bytes .../_0x8b492afad08c3518e645a7f19af0f63e.json | 25 + .../_subject_id_043/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_043/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2538 bytes .../_0x381748b44ca3771052bbcf37e8afe6cc.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_043/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2853 bytes .../_subject_id_044/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_044/afni_proc/_node.pklz | Bin 0 -> 1295 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2888 bytes .../_0xe3f0a878664684a99c6ad6ba1be4cca3.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_044/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x6354c94b8fafad0a2d0ea01316084569.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_045/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0x1d4c51e53416d8b82b13a96333580f82.json | 25 + .../_subject_id_046/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_046/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2545 bytes .../_0x5f43c7f735c08a981e581d35b508cae6.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_046/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0x6717d3cf6657c70372ad1f0df71c7481.json | 25 + .../_subject_id_047/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_047/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2540 bytes .../_0x856ccca4ca2e5938d06df03b1cde90b2.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_047/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0xe463d38146f4daeb17f42c78a43f4970.json | 25 + .../_subject_id_049/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_049/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2542 bytes .../_0x5c9bb7ddb1134a0503ef16fb2591e367.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_049/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0xf629673497638fc1be530fc0419613ea.json | 25 + .../_subject_id_050/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_050/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0xc20abc29a7f2cfb3c129121baaa625bb.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_050/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0xb010da99a8c5ba299100258ce16f9ffe.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_051/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0x6b31a6173b7df71090af96acd2f6c8a1.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_052/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0xd3fc95320172f7d63d16ee61a28a0d7d.json | 25 + .../_subject_id_053/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_053/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0xa8b26774dc1bbda1ac991b50707e62e8.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_053/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x5d692952cbd51d3bee4eaff23316a6fc.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_054/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0xadf9a5388032e433d0e4c62c11ec1c67.json | 25 + .../_subject_id_055/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_055/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2540 bytes .../_0x452ae5708964c457e7513fb29c2053d3.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_055/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_subject_id_056/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_056/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2894 bytes .../_0x3b6c30cc71f9ad366c822496fb589718.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_056/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0x9c05bb27deb8f33f64413d4465ea4ef8.json | 25 + .../_subject_id_057/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_057/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2547 bytes .../_0xfb31361957b77b916fbab80d8fec6def.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_057/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2852 bytes .../_0x09c1f3168e2d72b072ca0e01a947a58e.json | 25 + .../_subject_id_058/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_058/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x01e5b8dd24756ed0c0fe3629cc71eb3c.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_058/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_0x09b6f0379631039b0ae4fbfc242d4d59.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_059/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2851 bytes .../_0xbc6ff409e7a11a5e715e4ba53677c9c8.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_060/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0xb2f2d7a9a1dc7b5068b97008ab38a8cd.json | 25 + .../_subject_id_061/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_061/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2545 bytes .../_0x8266e658cbe0fdf32e3a7879b8073bec.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_061/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x0e1aaf13355ed7c82bf254acf616f31c.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_062/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_subject_id_063/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_063/afni_proc/_node.pklz | Bin 0 -> 1295 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2891 bytes .../_0x4586828376765da3dcebbcc65842752d.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_063/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_0x837b611046fbaed0402751086c5c5aea.json | 25 + .../_subject_id_064/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_064/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0xf50a88c8bfa3bb40af29bdfe600ac624.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_064/create_stimuli/_node.pklz | Bin 0 -> 1534 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0xec90c9e1a19cc00398bb60732b469df3.json | 25 + .../_subject_id_066/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_066/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x639864a150a788e88be80d083aa4c3d6.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_066/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0xca08fca9eef2190364b7897d017f5a89.json | 25 + .../_subject_id_067/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_067/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0x1b348cdf1acb0096519c9f5817e06914.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_067/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0xf538d8cfc972c0815c68dcb386dd89bf.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_068/create_stimuli/_node.pklz | Bin 0 -> 1540 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2851 bytes .../_0x7ad651e4ef4b8a2561b0678e31d87d06.json | 25 + .../_subject_id_069/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_069/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2545 bytes .../_0x4011380c8797270139dcfa391ddc1920.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_069/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_0x53c58d1052ca19c53a1a5d2dc8c0789c.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_070/create_stimuli/_node.pklz | Bin 0 -> 1540 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0x7220a6c614588a2c502e01d3a022546e.json | 25 + .../_subject_id_071/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_071/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2543 bytes .../_0x30489087666fd986fe613b7429f795d9.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_071/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0xc25390419459295f01a587c0773f1ae2.json | 25 + .../_subject_id_072/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_072/afni_proc/_node.pklz | Bin 0 -> 1295 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2542 bytes .../_0x872aa0df8d52bd94b041223c012cad7b.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_072/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0xb7da0429e0ae8a66567720eeedb35ffd.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_073/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x03f26d04b517fbd5a4d2062ff3f2f68d.json | 25 + .../_subject_id_074/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_074/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x9ea914ea3a56de0871a6f0ae454e0e86.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_074/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_subject_id_075/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_075/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2890 bytes .../_0x92d10bedb7ed8b1ff89fc77bbe5b3151.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_075/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x6c2e0e4f62dacc80e585410e422ba89f.json | 25 + .../_subject_id_076/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_076/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x1db59509511bb4dca10d238592ee3904.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_076/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2842 bytes .../_0x657a66eb55c9e5fe22b6facadb30a0cd.json | 25 + .../_subject_id_077/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_077/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2539 bytes .../_0x739c4a8b07a5681b1aaad919d61e986f.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_077/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_subject_id_079/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_079/afni_proc/_node.pklz | Bin 0 -> 1291 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2893 bytes .../_0x29b01735ef28de5158cd338cee9a79f8.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_079/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0xdb296635772377fd94ba947dc3481ed2.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_080/create_stimuli/_node.pklz | Bin 0 -> 1540 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x2ecd40acf1d2ffaab543eba174346124.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_081/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0xc1967b2724737b5b13288083144788cc.json | 25 + .../_subject_id_082/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_082/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0xa4f037b6d5ff386c5e97b1d3eb987752.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_082/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_0x687396ea1d6055ecb97495311aab5d55.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_083/create_stimuli/_node.pklz | Bin 0 -> 1541 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2852 bytes .../_0xcb97cba9ad63b78165ba4bc4bad657ca.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_084/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_subject_id_085/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_085/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2890 bytes .../_0x2015bbef96c8d3d0f1c59f9265af3cf2.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_085/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x00af9c0f332e31cd809361e68391cfc0.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_087/create_stimuli/_node.pklz | Bin 0 -> 1540 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0x6239e773ba053e07c01ae230d943aed1.json | 25 + .../_subject_id_088/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_088/afni_proc/_node.pklz | Bin 0 -> 1291 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x31b145bec7847e96e89836fbdbbd870e.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_088/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2845 bytes .../_0x425675644f506c856820345a1fa543f9.json | 25 + .../_subject_id_089/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_089/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2545 bytes .../_0xbf025bdf197385a2ca47bfa077d18083.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_089/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x7867e20b31553dc34b16dea33cbb86b4.json | 25 + .../_subject_id_090/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_090/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2540 bytes .../_0xfc610037c834d75e2eaf02a6b1596ead.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_090/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0x34ff581aaf00c780350576c6aceaff5d.json | 25 + .../_subject_id_092/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_092/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2543 bytes .../_0x579e7ac5e81b39521c2b1429535304b1.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_092/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x961cbfc6874517fad8958d745b394e73.json | 25 + .../_subject_id_093/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_093/afni_proc/_node.pklz | Bin 0 -> 1294 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2546 bytes .../_0x8b5c06294f57b8f33422e05c63ff2512.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_093/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0xe0ea2ce9cc1dbca353cfdd4d67e2f049.json | 25 + .../_subject_id_094/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_094/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x22dcd2ff2021e1007fe03333f333bcbd.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_094/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0x17cd4e6d0f884c5d89823ded883720b8.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_095/create_stimuli/_node.pklz | Bin 0 -> 1540 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0x117cf771f80206fefd91d4112830f527.json | 25 + .../_subject_id_096/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_096/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2542 bytes .../_0x95c4c5a44021b703ade418ad1eed8292.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_096/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0xd66bdde67324ae3081f10b2b8a34f33f.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_098/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_subject_id_099/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_099/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 23 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2892 bytes .../_0x53700f75572a6db12ddbea0609d825d6.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_099/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2850 bytes .../_0xb8e8a189322147b9c4aacdaf1278ddf1.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_100/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x7b397c40bfa713e8b0f26723621040bc.json | 25 + .../_subject_id_102/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_102/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2547 bytes .../_0xdd8761564040ddbfdd0333c88f5b5d04.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_102/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0xda419de82cabb6ff026179518fc7254d.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_103/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2843 bytes .../_0x13cd2b39c9e9fcc85b70577da7095809.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_104/create_stimuli/_node.pklz | Bin 0 -> 1541 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0xb89f0009728fded185114954fd09be0a.json | 25 + .../_subject_id_105/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_105/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2546 bytes .../_0x9cef5ee9021e53deb1d17133128bf8cc.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_105/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2843 bytes .../_0x4408790cf3576eba1e3b44649c35a937.json | 25 + .../_subject_id_106/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_106/afni_proc/_node.pklz | Bin 0 -> 1295 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2537 bytes .../_0xba6330f8e2e17d9e85d982abbabef116.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_106/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2851 bytes .../_0xd9baabf70b64b42e1bfcb798316eecbd.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_107/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0xa8ba560a0952ffc6c987bc252f5e8f2a.json | 25 + .../_subject_id_108/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_108/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2541 bytes .../_0x3a145b4551094625dab75161caa45066.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_108/create_stimuli/_node.pklz | Bin 0 -> 1539 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2843 bytes .../_0xf27743b314f96b86ce4efaf7648fb89c.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_109/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2842 bytes .../_0x36f70ce00573a8177152ee0dba3978ce.json | 25 + .../_subject_id_110/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_110/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2540 bytes .../_0x2802425b9e54b64f9e9b7f212d420d57.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_110/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0xb9602c990271f2cc01017ccaf6130fe9.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_112/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x8028ec2ab171cdb4a3620d5c50235bdc.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_113/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0x91d700cee6ab9eb414550298de7d1f22.json | 25 + .../_subject_id_114/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_114/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2542 bytes .../_0x1405a9ce75d4c39543fff51cd4d9506f.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_114/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2846 bytes .../_0x5127709ab3ac7067acf4cf436c3a5c49.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 591 bytes .../_subject_id_115/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2843 bytes .../_0xe5cb75ed33128b68ebee5635ff6f015a.json | 25 + .../_subject_id_116/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_116/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2545 bytes .../_0x4a7a13e3b7048a4a83a1b10792ee22ec.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 591 bytes .../_subject_id_116/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2844 bytes .../_0x8acf8af6343b6f4763a526b0a5a3ad6a.json | 25 + .../_subject_id_117/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_117/afni_proc/_node.pklz | Bin 0 -> 1291 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2547 bytes .../_0xbb6302e2f4b1767c0bfe70340f1011d9.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 591 bytes .../_subject_id_117/create_stimuli/_node.pklz | Bin 0 -> 1535 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2847 bytes .../_0xd09e0416cae08054579506f039eb5147.json | 25 + .../_subject_id_118/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_118/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x23d3092dcbeb29c96a57146dbeb92b8a.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 591 bytes .../_subject_id_118/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2842 bytes .../_0x486e06042423a9b68aa41826c53f617b.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 591 bytes .../_subject_id_119/create_stimuli/_node.pklz | Bin 0 -> 1540 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2851 bytes .../_0x9d907e30c3d4ff576d4f61ea2c308b47.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 589 bytes .../_subject_id_120/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2848 bytes .../_0xf66976ca0b247e935b8418ba04bfb86a.json | 25 + .../_subject_id_121/afni_proc/_inputs.pklz | Bin 0 -> 305 bytes .../_subject_id_121/afni_proc/_node.pklz | Bin 0 -> 1292 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2543 bytes .../_0x27bc88a639010f6e9d6db14931ddb7e3.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_121/create_stimuli/_node.pklz | Bin 0 -> 1537 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x07d961123977aad61a90906a23f8a450.json | 25 + .../_subject_id_123/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_123/afni_proc/_node.pklz | Bin 0 -> 1293 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2544 bytes .../_0x1d7429d15d8dc8bc366cef6fdca6e0ba.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_123/create_stimuli/_node.pklz | Bin 0 -> 1536 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2849 bytes .../_0x5cb1fba445e30746c5a1ddba11ddaaca.json | 25 + .../_subject_id_124/afni_proc/_inputs.pklz | Bin 0 -> 306 bytes .../_subject_id_124/afni_proc/_node.pklz | Bin 0 -> 1291 bytes .../afni_proc/_report/report.rst | 126 + .../afni_proc/result_afni_proc.pklz | Bin 0 -> 2542 bytes .../_0xee20d4b7506c6a5d86c5f408e9250c9f.json | 14 + .../create_stimuli/_inputs.pklz | Bin 0 -> 590 bytes .../_subject_id_124/create_stimuli/_node.pklz | Bin 0 -> 1538 bytes .../create_stimuli/_report/report.rst | 170 + .../create_stimuli/result_create_stimuli.pklz | Bin 0 -> 2851 bytes Afni_proc_through_nipype/d3.js | 9255 +++++++++++++++++ .../_0x2a29d196401e292490f5a331c7b8bf30.json | 24 + Afni_proc_through_nipype/files/_inputs.pklz | Bin 0 -> 116 bytes Afni_proc_through_nipype/files/_node.pklz | Bin 0 -> 1070 bytes .../files/_report/report.rst | 114 + .../files/result_files.pklz | Bin 0 -> 2388 bytes Afni_proc_through_nipype/graph.json | 1520 +++ Afni_proc_through_nipype/graph1.json | 2722 +++++ Afni_proc_through_nipype/index.html | 264 + narps_open/pipelines/team_6VV2_wip.py | 36 +- 892 files changed, 42888 insertions(+), 1 deletion(-) create mode 100644 Afni_proc_through_nipype/_subject_id_001/afni_proc/_0x40130b82c0418a5dc016fe0334a2c8f6_unfinished.json create mode 100644 Afni_proc_through_nipype/_subject_id_001/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_001/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_001/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_001/create_stimuli/_0x4b88c28a232fe352aaa3991b95b3cbfc.json create mode 100644 Afni_proc_through_nipype/_subject_id_001/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_001/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_001/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_001/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_002/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_002/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_002/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_002/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_002/create_stimuli/_0x828dba5362000ae4a98c5e5894950bc2.json create mode 100644 Afni_proc_through_nipype/_subject_id_002/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_002/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_002/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_002/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_003/afni_proc/_0x1672a71e029a1fae37c7d82d60d10354.json create mode 100644 Afni_proc_through_nipype/_subject_id_003/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_003/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_003/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_003/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_003/create_stimuli/_0xf39e16cd9b4e465ab9a6df01d1bca5e0.json create mode 100644 Afni_proc_through_nipype/_subject_id_003/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_003/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_003/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_003/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_004/afni_proc/_0x7bd12589dcfbb82daba15bb9e5b941b8.json create mode 100644 Afni_proc_through_nipype/_subject_id_004/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_004/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_004/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_004/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_004/create_stimuli/_0x332b1c6e5d406505a41b9862da82d3af.json create mode 100644 Afni_proc_through_nipype/_subject_id_004/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_004/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_004/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_004/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_005/afni_proc/_0x66adc730aec8306bd719310c7f023b50.json create mode 100644 Afni_proc_through_nipype/_subject_id_005/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_005/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_005/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_005/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_005/create_stimuli/_0x53e9f2ab37b004ea8655a036430b95db.json create mode 100644 Afni_proc_through_nipype/_subject_id_005/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_005/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_005/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_005/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_006/create_stimuli/_0x21ebbfe5fc586de50f78d96b027cb04e.json create mode 100644 Afni_proc_through_nipype/_subject_id_006/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_006/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_006/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_006/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_008/afni_proc/_0x082381b5999def21113ab7bd5970f444.json create mode 100644 Afni_proc_through_nipype/_subject_id_008/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_008/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_008/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_008/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_008/create_stimuli/_0x2e8468cb3d727bd5c1802195995c0551.json create mode 100644 Afni_proc_through_nipype/_subject_id_008/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_008/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_008/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_008/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_009/create_stimuli/_0xcfdc4c461ca3e89691c0a1b184ef4a41.json create mode 100644 Afni_proc_through_nipype/_subject_id_009/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_009/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_009/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_009/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_010/afni_proc/_0xdc77add13a0e2b01bd236484f756ff9f.json create mode 100644 Afni_proc_through_nipype/_subject_id_010/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_010/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_010/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_010/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_010/create_stimuli/_0xc7bcfd952bdeda6f1ac3267d3fe40efe.json create mode 100644 Afni_proc_through_nipype/_subject_id_010/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_010/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_010/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_010/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_011/afni_proc/_0xcb98c1c3f8ba2766789a33a20180999b.json create mode 100644 Afni_proc_through_nipype/_subject_id_011/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_011/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_011/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_011/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_011/create_stimuli/_0x562dae15b2074b2c0630186f6a706e0a.json create mode 100644 Afni_proc_through_nipype/_subject_id_011/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_011/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_011/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_011/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_013/afni_proc/_0x78ea16f74f40a91d4904afe87bb2cb05.json create mode 100644 Afni_proc_through_nipype/_subject_id_013/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_013/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_013/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_013/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_013/create_stimuli/_0xdef586efabfbe19760f7ee91bc0fdaea.json create mode 100644 Afni_proc_through_nipype/_subject_id_013/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_013/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_013/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_013/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_014/create_stimuli/_0x803ed4427ac75dd2491e4cb41b84f2c2.json create mode 100644 Afni_proc_through_nipype/_subject_id_014/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_014/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_014/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_014/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_015/create_stimuli/_0xe09c3b6f1c6fa35a9899bf0bfc04377e.json create mode 100644 Afni_proc_through_nipype/_subject_id_015/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_015/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_015/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_015/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_016/afni_proc/_0xf78a12fdff76772b70f5f757c88ec718.json create mode 100644 Afni_proc_through_nipype/_subject_id_016/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_016/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_016/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_016/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_016/create_stimuli/_0x4506aaa53352c49a81e65aa0d9ecb066.json create mode 100644 Afni_proc_through_nipype/_subject_id_016/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_016/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_016/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_016/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_017/afni_proc/_0x75135d983f2d910c596b1534afaa6e07.json create mode 100644 Afni_proc_through_nipype/_subject_id_017/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_017/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_017/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_017/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_017/create_stimuli/_0xe07660d4ef5ef0a4815e084218fc7a84.json create mode 100644 Afni_proc_through_nipype/_subject_id_017/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_017/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_017/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_017/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_018/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_018/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_018/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_018/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_018/create_stimuli/_0x96527a62190622c3c36f1d18057ebd4a.json create mode 100644 Afni_proc_through_nipype/_subject_id_018/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_018/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_018/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_018/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_019/afni_proc/_0x3ed5fc939177982773f4a3de7aade6e2.json create mode 100644 Afni_proc_through_nipype/_subject_id_019/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_019/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_019/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_019/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_019/create_stimuli/_0xefa4ecc73cd1207b7a19ccf8c641bc92.json create mode 100644 Afni_proc_through_nipype/_subject_id_019/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_019/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_019/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_019/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_020/afni_proc/_0xf15640574a5fa3ee862867dd48258cc4.json create mode 100644 Afni_proc_through_nipype/_subject_id_020/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_020/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_020/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_020/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_020/create_stimuli/_0x87f22be45611d46a5e5253005a5c607a.json create mode 100644 Afni_proc_through_nipype/_subject_id_020/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_020/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_020/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_020/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_021/afni_proc/_0x842d0ffe2f7891e4fcd9c15e70ad76dd.json create mode 100644 Afni_proc_through_nipype/_subject_id_021/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_021/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_021/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_021/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_021/create_stimuli/_0x2035f23ddf2da6815786e483128949d6.json create mode 100644 Afni_proc_through_nipype/_subject_id_021/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_021/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_021/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_021/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_022/afni_proc/_0x034759bf09ede3f732a354f3b1727e10.json create mode 100644 Afni_proc_through_nipype/_subject_id_022/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_022/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_022/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_022/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_022/create_stimuli/_0x27d39a75b3df3dee233986845c0d00be.json create mode 100644 Afni_proc_through_nipype/_subject_id_022/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_022/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_022/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_022/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_024/afni_proc/_0xae2900a421e5ae12940c8a7d83be362e.json create mode 100644 Afni_proc_through_nipype/_subject_id_024/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_024/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_024/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_024/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_024/create_stimuli/_0x79dfe99ab4a5e6f1d1e008e0b6056d0b.json create mode 100644 Afni_proc_through_nipype/_subject_id_024/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_024/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_024/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_024/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_025/create_stimuli/_0x9e31053bcf1e12b25fec06cca8b3f6ca.json create mode 100644 Afni_proc_through_nipype/_subject_id_025/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_025/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_025/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_025/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_026/afni_proc/_0x0f44349e272f010e5b6386c8c9482953.json create mode 100644 Afni_proc_through_nipype/_subject_id_026/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_026/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_026/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_026/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_026/create_stimuli/_0xb821996742c1404f35791ed54fd21605.json create mode 100644 Afni_proc_through_nipype/_subject_id_026/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_026/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_026/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_026/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_027/create_stimuli/_0x8535316d7b3edd0392f612e06a6f297b.json create mode 100644 Afni_proc_through_nipype/_subject_id_027/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_027/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_027/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_027/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_029/afni_proc/_0xe48364c65e06397ae3b8a04b1740225f.json create mode 100644 Afni_proc_through_nipype/_subject_id_029/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_029/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_029/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_029/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_029/create_stimuli/_0xcdd8a1e9a8f4f233f0947d5ed7419b67.json create mode 100644 Afni_proc_through_nipype/_subject_id_029/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_029/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_029/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_029/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_030/afni_proc/_0x946474cb872f3497e0a44b107f0aeecf.json create mode 100644 Afni_proc_through_nipype/_subject_id_030/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_030/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_030/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_030/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_030/create_stimuli/_0x8f5cb2646fc2fa8424e53b22f26bb048.json create mode 100644 Afni_proc_through_nipype/_subject_id_030/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_030/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_030/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_030/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_032/create_stimuli/_0xe5d7c01301c9bbcd5164eceded2c27f3.json create mode 100644 Afni_proc_through_nipype/_subject_id_032/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_032/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_032/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_032/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_033/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_033/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_033/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_033/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_033/create_stimuli/_0x6c9baf9c6d70dfe0158fb11e86d9d85f.json create mode 100644 Afni_proc_through_nipype/_subject_id_033/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_033/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_033/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_033/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_035/create_stimuli/_0x60ea3b92aac3c9ed6c62016a8b7c7fe5.json create mode 100644 Afni_proc_through_nipype/_subject_id_035/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_035/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_035/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_035/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_036/create_stimuli/_0x992d4ff2428428edc7b2ca38bb86dc65.json create mode 100644 Afni_proc_through_nipype/_subject_id_036/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_036/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_036/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_036/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_037/create_stimuli/_0xcc21dffa6fe1cce80b5314a60c3ff5e6.json create mode 100644 Afni_proc_through_nipype/_subject_id_037/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_037/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_037/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_037/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_038/afni_proc/_0x9f1fb559a7f70b06e79e2ceeed7c7503.json create mode 100644 Afni_proc_through_nipype/_subject_id_038/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_038/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_038/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_038/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_038/create_stimuli/_0x8020b887b800fb3211deeaa3d63de33d.json create mode 100644 Afni_proc_through_nipype/_subject_id_038/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_038/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_038/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_038/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_039/afni_proc/_0xab1371e1988d24b472db63e18ff73eb2.json create mode 100644 Afni_proc_through_nipype/_subject_id_039/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_039/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_039/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_039/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_039/create_stimuli/_0xc0ecaca3746a356c8aab463303ba4948.json create mode 100644 Afni_proc_through_nipype/_subject_id_039/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_039/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_039/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_039/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_040/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_040/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_040/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_040/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_040/create_stimuli/_0x067613127eb9873042069b2d00551fe0.json create mode 100644 Afni_proc_through_nipype/_subject_id_040/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_040/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_040/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_040/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_041/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_041/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_041/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_041/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_041/create_stimuli/_0xa892d02df6f04aa55c6f92705c256a0d.json create mode 100644 Afni_proc_through_nipype/_subject_id_041/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_041/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_041/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_041/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_043/afni_proc/_0x8b492afad08c3518e645a7f19af0f63e.json create mode 100644 Afni_proc_through_nipype/_subject_id_043/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_043/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_043/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_043/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_043/create_stimuli/_0x381748b44ca3771052bbcf37e8afe6cc.json create mode 100644 Afni_proc_through_nipype/_subject_id_043/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_043/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_043/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_043/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_044/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_044/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_044/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_044/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_044/create_stimuli/_0xe3f0a878664684a99c6ad6ba1be4cca3.json create mode 100644 Afni_proc_through_nipype/_subject_id_044/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_044/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_044/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_044/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_045/create_stimuli/_0x6354c94b8fafad0a2d0ea01316084569.json create mode 100644 Afni_proc_through_nipype/_subject_id_045/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_045/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_045/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_045/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_046/afni_proc/_0x1d4c51e53416d8b82b13a96333580f82.json create mode 100644 Afni_proc_through_nipype/_subject_id_046/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_046/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_046/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_046/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_046/create_stimuli/_0x5f43c7f735c08a981e581d35b508cae6.json create mode 100644 Afni_proc_through_nipype/_subject_id_046/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_046/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_046/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_046/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_047/afni_proc/_0x6717d3cf6657c70372ad1f0df71c7481.json create mode 100644 Afni_proc_through_nipype/_subject_id_047/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_047/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_047/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_047/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_047/create_stimuli/_0x856ccca4ca2e5938d06df03b1cde90b2.json create mode 100644 Afni_proc_through_nipype/_subject_id_047/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_047/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_047/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_047/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_049/afni_proc/_0xe463d38146f4daeb17f42c78a43f4970.json create mode 100644 Afni_proc_through_nipype/_subject_id_049/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_049/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_049/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_049/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_049/create_stimuli/_0x5c9bb7ddb1134a0503ef16fb2591e367.json create mode 100644 Afni_proc_through_nipype/_subject_id_049/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_049/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_049/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_049/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_050/afni_proc/_0xf629673497638fc1be530fc0419613ea.json create mode 100644 Afni_proc_through_nipype/_subject_id_050/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_050/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_050/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_050/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_050/create_stimuli/_0xc20abc29a7f2cfb3c129121baaa625bb.json create mode 100644 Afni_proc_through_nipype/_subject_id_050/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_050/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_050/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_050/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_051/create_stimuli/_0xb010da99a8c5ba299100258ce16f9ffe.json create mode 100644 Afni_proc_through_nipype/_subject_id_051/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_051/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_051/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_051/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_052/create_stimuli/_0x6b31a6173b7df71090af96acd2f6c8a1.json create mode 100644 Afni_proc_through_nipype/_subject_id_052/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_052/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_052/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_052/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_053/afni_proc/_0xd3fc95320172f7d63d16ee61a28a0d7d.json create mode 100644 Afni_proc_through_nipype/_subject_id_053/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_053/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_053/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_053/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_053/create_stimuli/_0xa8b26774dc1bbda1ac991b50707e62e8.json create mode 100644 Afni_proc_through_nipype/_subject_id_053/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_053/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_053/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_053/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_054/create_stimuli/_0x5d692952cbd51d3bee4eaff23316a6fc.json create mode 100644 Afni_proc_through_nipype/_subject_id_054/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_054/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_054/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_054/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_055/afni_proc/_0xadf9a5388032e433d0e4c62c11ec1c67.json create mode 100644 Afni_proc_through_nipype/_subject_id_055/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_055/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_055/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_055/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_055/create_stimuli/_0x452ae5708964c457e7513fb29c2053d3.json create mode 100644 Afni_proc_through_nipype/_subject_id_055/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_055/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_055/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_055/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_056/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_056/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_056/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_056/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_056/create_stimuli/_0x3b6c30cc71f9ad366c822496fb589718.json create mode 100644 Afni_proc_through_nipype/_subject_id_056/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_056/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_056/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_056/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_057/afni_proc/_0x9c05bb27deb8f33f64413d4465ea4ef8.json create mode 100644 Afni_proc_through_nipype/_subject_id_057/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_057/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_057/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_057/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_057/create_stimuli/_0xfb31361957b77b916fbab80d8fec6def.json create mode 100644 Afni_proc_through_nipype/_subject_id_057/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_057/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_057/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_057/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_058/afni_proc/_0x09c1f3168e2d72b072ca0e01a947a58e.json create mode 100644 Afni_proc_through_nipype/_subject_id_058/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_058/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_058/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_058/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_058/create_stimuli/_0x01e5b8dd24756ed0c0fe3629cc71eb3c.json create mode 100644 Afni_proc_through_nipype/_subject_id_058/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_058/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_058/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_058/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_059/create_stimuli/_0x09b6f0379631039b0ae4fbfc242d4d59.json create mode 100644 Afni_proc_through_nipype/_subject_id_059/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_059/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_059/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_059/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_060/create_stimuli/_0xbc6ff409e7a11a5e715e4ba53677c9c8.json create mode 100644 Afni_proc_through_nipype/_subject_id_060/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_060/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_060/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_060/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_061/afni_proc/_0xb2f2d7a9a1dc7b5068b97008ab38a8cd.json create mode 100644 Afni_proc_through_nipype/_subject_id_061/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_061/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_061/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_061/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_061/create_stimuli/_0x8266e658cbe0fdf32e3a7879b8073bec.json create mode 100644 Afni_proc_through_nipype/_subject_id_061/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_061/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_061/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_061/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_062/create_stimuli/_0x0e1aaf13355ed7c82bf254acf616f31c.json create mode 100644 Afni_proc_through_nipype/_subject_id_062/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_062/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_062/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_062/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_063/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_063/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_063/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_063/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_063/create_stimuli/_0x4586828376765da3dcebbcc65842752d.json create mode 100644 Afni_proc_through_nipype/_subject_id_063/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_063/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_063/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_063/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_064/afni_proc/_0x837b611046fbaed0402751086c5c5aea.json create mode 100644 Afni_proc_through_nipype/_subject_id_064/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_064/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_064/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_064/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_064/create_stimuli/_0xf50a88c8bfa3bb40af29bdfe600ac624.json create mode 100644 Afni_proc_through_nipype/_subject_id_064/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_064/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_064/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_064/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_066/afni_proc/_0xec90c9e1a19cc00398bb60732b469df3.json create mode 100644 Afni_proc_through_nipype/_subject_id_066/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_066/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_066/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_066/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_066/create_stimuli/_0x639864a150a788e88be80d083aa4c3d6.json create mode 100644 Afni_proc_through_nipype/_subject_id_066/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_066/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_066/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_066/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_067/afni_proc/_0xca08fca9eef2190364b7897d017f5a89.json create mode 100644 Afni_proc_through_nipype/_subject_id_067/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_067/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_067/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_067/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_067/create_stimuli/_0x1b348cdf1acb0096519c9f5817e06914.json create mode 100644 Afni_proc_through_nipype/_subject_id_067/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_067/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_067/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_067/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_068/create_stimuli/_0xf538d8cfc972c0815c68dcb386dd89bf.json create mode 100644 Afni_proc_through_nipype/_subject_id_068/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_068/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_068/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_068/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_069/afni_proc/_0x7ad651e4ef4b8a2561b0678e31d87d06.json create mode 100644 Afni_proc_through_nipype/_subject_id_069/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_069/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_069/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_069/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_069/create_stimuli/_0x4011380c8797270139dcfa391ddc1920.json create mode 100644 Afni_proc_through_nipype/_subject_id_069/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_069/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_069/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_069/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_070/create_stimuli/_0x53c58d1052ca19c53a1a5d2dc8c0789c.json create mode 100644 Afni_proc_through_nipype/_subject_id_070/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_070/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_070/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_070/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_071/afni_proc/_0x7220a6c614588a2c502e01d3a022546e.json create mode 100644 Afni_proc_through_nipype/_subject_id_071/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_071/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_071/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_071/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_071/create_stimuli/_0x30489087666fd986fe613b7429f795d9.json create mode 100644 Afni_proc_through_nipype/_subject_id_071/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_071/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_071/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_071/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_072/afni_proc/_0xc25390419459295f01a587c0773f1ae2.json create mode 100644 Afni_proc_through_nipype/_subject_id_072/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_072/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_072/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_072/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_072/create_stimuli/_0x872aa0df8d52bd94b041223c012cad7b.json create mode 100644 Afni_proc_through_nipype/_subject_id_072/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_072/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_072/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_072/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_073/create_stimuli/_0xb7da0429e0ae8a66567720eeedb35ffd.json create mode 100644 Afni_proc_through_nipype/_subject_id_073/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_073/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_073/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_073/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_074/afni_proc/_0x03f26d04b517fbd5a4d2062ff3f2f68d.json create mode 100644 Afni_proc_through_nipype/_subject_id_074/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_074/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_074/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_074/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_074/create_stimuli/_0x9ea914ea3a56de0871a6f0ae454e0e86.json create mode 100644 Afni_proc_through_nipype/_subject_id_074/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_074/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_074/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_074/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_075/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_075/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_075/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_075/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_075/create_stimuli/_0x92d10bedb7ed8b1ff89fc77bbe5b3151.json create mode 100644 Afni_proc_through_nipype/_subject_id_075/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_075/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_075/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_075/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_076/afni_proc/_0x6c2e0e4f62dacc80e585410e422ba89f.json create mode 100644 Afni_proc_through_nipype/_subject_id_076/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_076/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_076/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_076/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_076/create_stimuli/_0x1db59509511bb4dca10d238592ee3904.json create mode 100644 Afni_proc_through_nipype/_subject_id_076/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_076/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_076/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_076/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_077/afni_proc/_0x657a66eb55c9e5fe22b6facadb30a0cd.json create mode 100644 Afni_proc_through_nipype/_subject_id_077/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_077/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_077/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_077/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_077/create_stimuli/_0x739c4a8b07a5681b1aaad919d61e986f.json create mode 100644 Afni_proc_through_nipype/_subject_id_077/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_077/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_077/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_077/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_079/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_079/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_079/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_079/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_079/create_stimuli/_0x29b01735ef28de5158cd338cee9a79f8.json create mode 100644 Afni_proc_through_nipype/_subject_id_079/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_079/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_079/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_079/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_080/create_stimuli/_0xdb296635772377fd94ba947dc3481ed2.json create mode 100644 Afni_proc_through_nipype/_subject_id_080/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_080/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_080/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_080/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_081/create_stimuli/_0x2ecd40acf1d2ffaab543eba174346124.json create mode 100644 Afni_proc_through_nipype/_subject_id_081/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_081/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_081/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_081/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_082/afni_proc/_0xc1967b2724737b5b13288083144788cc.json create mode 100644 Afni_proc_through_nipype/_subject_id_082/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_082/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_082/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_082/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_082/create_stimuli/_0xa4f037b6d5ff386c5e97b1d3eb987752.json create mode 100644 Afni_proc_through_nipype/_subject_id_082/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_082/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_082/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_082/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_083/create_stimuli/_0x687396ea1d6055ecb97495311aab5d55.json create mode 100644 Afni_proc_through_nipype/_subject_id_083/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_083/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_083/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_083/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_084/create_stimuli/_0xcb97cba9ad63b78165ba4bc4bad657ca.json create mode 100644 Afni_proc_through_nipype/_subject_id_084/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_084/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_084/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_084/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_085/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_085/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_085/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_085/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_085/create_stimuli/_0x2015bbef96c8d3d0f1c59f9265af3cf2.json create mode 100644 Afni_proc_through_nipype/_subject_id_085/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_085/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_085/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_085/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_087/create_stimuli/_0x00af9c0f332e31cd809361e68391cfc0.json create mode 100644 Afni_proc_through_nipype/_subject_id_087/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_087/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_087/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_087/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_088/afni_proc/_0x6239e773ba053e07c01ae230d943aed1.json create mode 100644 Afni_proc_through_nipype/_subject_id_088/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_088/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_088/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_088/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_088/create_stimuli/_0x31b145bec7847e96e89836fbdbbd870e.json create mode 100644 Afni_proc_through_nipype/_subject_id_088/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_088/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_088/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_088/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_089/afni_proc/_0x425675644f506c856820345a1fa543f9.json create mode 100644 Afni_proc_through_nipype/_subject_id_089/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_089/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_089/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_089/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_089/create_stimuli/_0xbf025bdf197385a2ca47bfa077d18083.json create mode 100644 Afni_proc_through_nipype/_subject_id_089/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_089/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_089/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_089/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_090/afni_proc/_0x7867e20b31553dc34b16dea33cbb86b4.json create mode 100644 Afni_proc_through_nipype/_subject_id_090/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_090/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_090/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_090/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_090/create_stimuli/_0xfc610037c834d75e2eaf02a6b1596ead.json create mode 100644 Afni_proc_through_nipype/_subject_id_090/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_090/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_090/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_090/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_092/afni_proc/_0x34ff581aaf00c780350576c6aceaff5d.json create mode 100644 Afni_proc_through_nipype/_subject_id_092/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_092/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_092/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_092/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_092/create_stimuli/_0x579e7ac5e81b39521c2b1429535304b1.json create mode 100644 Afni_proc_through_nipype/_subject_id_092/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_092/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_092/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_092/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_093/afni_proc/_0x961cbfc6874517fad8958d745b394e73.json create mode 100644 Afni_proc_through_nipype/_subject_id_093/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_093/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_093/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_093/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_093/create_stimuli/_0x8b5c06294f57b8f33422e05c63ff2512.json create mode 100644 Afni_proc_through_nipype/_subject_id_093/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_093/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_093/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_093/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_094/afni_proc/_0xe0ea2ce9cc1dbca353cfdd4d67e2f049.json create mode 100644 Afni_proc_through_nipype/_subject_id_094/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_094/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_094/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_094/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_094/create_stimuli/_0x22dcd2ff2021e1007fe03333f333bcbd.json create mode 100644 Afni_proc_through_nipype/_subject_id_094/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_094/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_094/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_094/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_095/create_stimuli/_0x17cd4e6d0f884c5d89823ded883720b8.json create mode 100644 Afni_proc_through_nipype/_subject_id_095/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_095/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_095/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_095/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_096/afni_proc/_0x117cf771f80206fefd91d4112830f527.json create mode 100644 Afni_proc_through_nipype/_subject_id_096/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_096/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_096/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_096/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_096/create_stimuli/_0x95c4c5a44021b703ade418ad1eed8292.json create mode 100644 Afni_proc_through_nipype/_subject_id_096/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_096/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_096/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_096/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_098/create_stimuli/_0xd66bdde67324ae3081f10b2b8a34f33f.json create mode 100644 Afni_proc_through_nipype/_subject_id_098/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_098/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_098/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_098/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_099/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_099/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_099/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_099/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_099/create_stimuli/_0x53700f75572a6db12ddbea0609d825d6.json create mode 100644 Afni_proc_through_nipype/_subject_id_099/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_099/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_099/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_099/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_100/create_stimuli/_0xb8e8a189322147b9c4aacdaf1278ddf1.json create mode 100644 Afni_proc_through_nipype/_subject_id_100/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_100/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_100/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_100/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_102/afni_proc/_0x7b397c40bfa713e8b0f26723621040bc.json create mode 100644 Afni_proc_through_nipype/_subject_id_102/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_102/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_102/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_102/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_102/create_stimuli/_0xdd8761564040ddbfdd0333c88f5b5d04.json create mode 100644 Afni_proc_through_nipype/_subject_id_102/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_102/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_102/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_102/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_103/create_stimuli/_0xda419de82cabb6ff026179518fc7254d.json create mode 100644 Afni_proc_through_nipype/_subject_id_103/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_103/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_103/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_103/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_104/create_stimuli/_0x13cd2b39c9e9fcc85b70577da7095809.json create mode 100644 Afni_proc_through_nipype/_subject_id_104/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_104/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_104/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_104/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_105/afni_proc/_0xb89f0009728fded185114954fd09be0a.json create mode 100644 Afni_proc_through_nipype/_subject_id_105/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_105/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_105/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_105/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_105/create_stimuli/_0x9cef5ee9021e53deb1d17133128bf8cc.json create mode 100644 Afni_proc_through_nipype/_subject_id_105/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_105/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_105/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_105/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_106/afni_proc/_0x4408790cf3576eba1e3b44649c35a937.json create mode 100644 Afni_proc_through_nipype/_subject_id_106/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_106/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_106/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_106/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_106/create_stimuli/_0xba6330f8e2e17d9e85d982abbabef116.json create mode 100644 Afni_proc_through_nipype/_subject_id_106/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_106/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_106/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_106/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_107/create_stimuli/_0xd9baabf70b64b42e1bfcb798316eecbd.json create mode 100644 Afni_proc_through_nipype/_subject_id_107/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_107/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_107/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_107/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_108/afni_proc/_0xa8ba560a0952ffc6c987bc252f5e8f2a.json create mode 100644 Afni_proc_through_nipype/_subject_id_108/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_108/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_108/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_108/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_108/create_stimuli/_0x3a145b4551094625dab75161caa45066.json create mode 100644 Afni_proc_through_nipype/_subject_id_108/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_108/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_108/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_108/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_109/create_stimuli/_0xf27743b314f96b86ce4efaf7648fb89c.json create mode 100644 Afni_proc_through_nipype/_subject_id_109/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_109/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_109/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_109/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_110/afni_proc/_0x36f70ce00573a8177152ee0dba3978ce.json create mode 100644 Afni_proc_through_nipype/_subject_id_110/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_110/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_110/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_110/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_110/create_stimuli/_0x2802425b9e54b64f9e9b7f212d420d57.json create mode 100644 Afni_proc_through_nipype/_subject_id_110/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_110/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_110/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_110/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_112/create_stimuli/_0xb9602c990271f2cc01017ccaf6130fe9.json create mode 100644 Afni_proc_through_nipype/_subject_id_112/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_112/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_112/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_112/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_113/create_stimuli/_0x8028ec2ab171cdb4a3620d5c50235bdc.json create mode 100644 Afni_proc_through_nipype/_subject_id_113/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_113/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_113/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_113/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_114/afni_proc/_0x91d700cee6ab9eb414550298de7d1f22.json create mode 100644 Afni_proc_through_nipype/_subject_id_114/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_114/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_114/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_114/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_114/create_stimuli/_0x1405a9ce75d4c39543fff51cd4d9506f.json create mode 100644 Afni_proc_through_nipype/_subject_id_114/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_114/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_114/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_114/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_115/create_stimuli/_0x5127709ab3ac7067acf4cf436c3a5c49.json create mode 100644 Afni_proc_through_nipype/_subject_id_115/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_115/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_115/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_115/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_116/afni_proc/_0xe5cb75ed33128b68ebee5635ff6f015a.json create mode 100644 Afni_proc_through_nipype/_subject_id_116/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_116/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_116/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_116/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_116/create_stimuli/_0x4a7a13e3b7048a4a83a1b10792ee22ec.json create mode 100644 Afni_proc_through_nipype/_subject_id_116/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_116/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_116/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_116/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_117/afni_proc/_0x8acf8af6343b6f4763a526b0a5a3ad6a.json create mode 100644 Afni_proc_through_nipype/_subject_id_117/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_117/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_117/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_117/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_117/create_stimuli/_0xbb6302e2f4b1767c0bfe70340f1011d9.json create mode 100644 Afni_proc_through_nipype/_subject_id_117/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_117/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_117/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_117/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_118/afni_proc/_0xd09e0416cae08054579506f039eb5147.json create mode 100644 Afni_proc_through_nipype/_subject_id_118/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_118/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_118/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_118/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_118/create_stimuli/_0x23d3092dcbeb29c96a57146dbeb92b8a.json create mode 100644 Afni_proc_through_nipype/_subject_id_118/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_118/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_118/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_118/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_119/create_stimuli/_0x486e06042423a9b68aa41826c53f617b.json create mode 100644 Afni_proc_through_nipype/_subject_id_119/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_119/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_119/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_119/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_120/create_stimuli/_0x9d907e30c3d4ff576d4f61ea2c308b47.json create mode 100644 Afni_proc_through_nipype/_subject_id_120/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_120/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_120/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_120/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_121/afni_proc/_0xf66976ca0b247e935b8418ba04bfb86a.json create mode 100644 Afni_proc_through_nipype/_subject_id_121/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_121/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_121/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_121/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_121/create_stimuli/_0x27bc88a639010f6e9d6db14931ddb7e3.json create mode 100644 Afni_proc_through_nipype/_subject_id_121/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_121/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_121/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_121/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_123/afni_proc/_0x07d961123977aad61a90906a23f8a450.json create mode 100644 Afni_proc_through_nipype/_subject_id_123/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_123/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_123/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_123/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_123/create_stimuli/_0x1d7429d15d8dc8bc366cef6fdca6e0ba.json create mode 100644 Afni_proc_through_nipype/_subject_id_123/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_123/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_123/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_123/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_124/afni_proc/_0x5cb1fba445e30746c5a1ddba11ddaaca.json create mode 100644 Afni_proc_through_nipype/_subject_id_124/afni_proc/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_124/afni_proc/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_124/afni_proc/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_124/afni_proc/result_afni_proc.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_124/create_stimuli/_0xee20d4b7506c6a5d86c5f408e9250c9f.json create mode 100644 Afni_proc_through_nipype/_subject_id_124/create_stimuli/_inputs.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_124/create_stimuli/_node.pklz create mode 100644 Afni_proc_through_nipype/_subject_id_124/create_stimuli/_report/report.rst create mode 100644 Afni_proc_through_nipype/_subject_id_124/create_stimuli/result_create_stimuli.pklz create mode 100644 Afni_proc_through_nipype/d3.js create mode 100644 Afni_proc_through_nipype/files/_0x2a29d196401e292490f5a331c7b8bf30.json create mode 100644 Afni_proc_through_nipype/files/_inputs.pklz create mode 100644 Afni_proc_through_nipype/files/_node.pklz create mode 100644 Afni_proc_through_nipype/files/_report/report.rst create mode 100644 Afni_proc_through_nipype/files/result_files.pklz create mode 100644 Afni_proc_through_nipype/graph.json create mode 100644 Afni_proc_through_nipype/graph1.json create mode 100644 Afni_proc_through_nipype/index.html diff --git a/Afni_proc_through_nipype/_subject_id_001/afni_proc/_0x40130b82c0418a5dc016fe0334a2c8f6_unfinished.json b/Afni_proc_through_nipype/_subject_id_001/afni_proc/_0x40130b82c0418a5dc016fe0334a2c8f6_unfinished.json new file mode 100644 index 00000000..d8d42f93 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_001/afni_proc/_0x40130b82c0418a5dc016fe0334a2c8f6_unfinished.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "001" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_001/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_001/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..42e4c420e14cbd713efecd32b494eceb151c46db GIT binary patch literal 303 zcmV+~0nq**iwFpV%z9-4|6gftaCLNZE^upXdMdtIrzytKMy^bgH5GG>}nPqBKyjSm2U&r6ShX>o)#5|n0 zoo>7^x^^C8_~FnJ>~!83rI_X=L2#Y)uI2(u;=1Ju8ebC5JR6|men$Ec${O?oZP7H~ z+!jsOk0k52i_c9~wFVXQc_ND4RT5Q0@ax3nw|})op?#h`84X!6i{T{6V|bh1gq}#Q}p83tpZ)SeF`a9csuX@}^k{9O%bP8U8;1W6@C*dVk3dXyuC;0Zi`J*L6 zj;R5Xa_!wl$GdBZk{O>=*0zM2Aeee_W3Kcx6KYNb%s?QtrzcOo^=`McT$l@+H@UQ+ zGn&A~)2NbIMKUfB(q=}5!S`O+MF@~srO}HUU8ZvAo(jm6wlRVX2Mm9WXSaK!!SOJP z5PB=@YGtX#{f(h7-42{Vf`F8)Fz+QAP)IZss0TqaaAg@j z4r_)!Y)+I?LITE6eNGTtjixbq&*CPdIwk1nl%&*BgC9%zU0h8B1U>;x2?7)}UP||? zScY^G3?2$mQcT5b@9r3@3Zf)NMjK12b1P&Qq#AT7SJK<130V`=aztNH%hsH_zqne; zsZ?`GW}r<-`6|A1%`xrB@)<}flQpW{DyYU1LUtmXLeN%$xKk)0h!G)UX{l*NBe&5< z!ko>r7(G8DbIQ@f_j^%bQOMlNc&(*$tz1bS644aS7D9*xq-*dD(k28KN#w7lIl zJl;LOjP`)F+g$6W$k7?3EA1ro?(WJ&7tuFvVv~p>dNUC zmvQ>PW@MK%(ZoqfFcRIhDZ7IWMTa`BY?^bK;8htW(mU4*GNVe3<#*zCu<7Wk0pVhQ zt=-fO1%1DH!47(Vy$)TY1YOVEcmKTh9_g^~8j}at{lM z%sGy>0HTa@Zf)pa@7xwnyqrv8|J4_N{}G-)-8PYx$qzXg$CLlM!i84ANP}J z*gK{V(01vNQVEcv-o1MvH%YjX(z E0F#w@l>h($ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_001/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_001/afni_proc/_report/report.rst new file mode 100644 index 00000000..a49e065e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_001/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a070 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 001 + diff --git a/Afni_proc_through_nipype/_subject_id_001/create_stimuli/_0x4b88c28a232fe352aaa3991b95b3cbfc.json b/Afni_proc_through_nipype/_subject_id_001/create_stimuli/_0x4b88c28a232fe352aaa3991b95b3cbfc.json new file mode 100644 index 00000000..bbc63a18 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_001/create_stimuli/_0x4b88c28a232fe352aaa3991b95b3cbfc.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "001" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_001/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_001/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..222627181eb0476415f76f419ad220327a6463fc GIT binary patch literal 589 zcmV-T00Mc`yxR+*8^UZdX{RPLVP;aqQt$zK86VSk@J!m&{UL7G=}_o2=jZzZhtr=g ze*M09)}3u@?_L)T%M|4-l}fZ^xPEYr>TDlw4b0!9|7D z-`6=@90#tXo?6$+a_+$oxB1-SOcG@Qbb%?;-zAsQN)qqtR!L~+8=ClrN8j*N-^kE6 zGVzU$zR{_^v7v8l;u{}*Qw17O~aFs=F{+Gr1>;Fio7#{ zia)l-;BS@4cU^KYyT7vZrt13jN3X5XwHmo-KUtT!l*C0#*q21?f8Cv?Qw6%@a|+ag zGG$vc&Il~ocK7novE4nNOoDcI(d)FkPyUiu#9x&J;OfR_SkyA*HDPH@Yf@51q_5L` bF6e?XT>80$CLf~MZyWCq?lp~C_y_<1!v-fI literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_001/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_001/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..36e77078a0baadfbaf202e070add2119e1f1a56d GIT binary patch literal 1535 zcmVc>u;XIHOMHj+k z;hEOaJmc6cf+B$7AZY6@l0{KxKu{7jqDLYXk{a6y478h|0oYa5Mf*qnivCJ3Db2$Z zOyhJi2qICuyyslEn=5lnU-66$zg8B2=K{`XZu1 zu5X&rf8A?;b*rI`1CR?)b2#6>@h`4NiAfW$!Z>Hgji zxn9c@jpfwG>y#-XLhO_2Xh?|^M>W482xlkUE zGy#&ng4pHeR(reCXaMz9^Hp#KMFIIvp6L~GOne~3ndN-7tXPl~@&E}XG6UxeETbSx z(xUErXW{A$i&P?>5{8Bg1dFm3!61|n6>*r%6_`XK6;9Gz-#+9XRK%!^NPtWS&j4-V z0SxLBk|N5|Ov!P*>oNCnjBG+bB7T2F?Ph{i8gms>4|&+{69!lpANP8&GHIN_YQW2P zKnMfxyMiQqK#)<*X!Rq>UX_gbg?QMHJM2p zPsFX1$1#$zS+O7!*vd#Rv_LS&gV2M@kI@mPP~j)dhEb7OxiNT=CDW@3XVff2xp9_& zf)|ruf}RA~mSdNBW`%H?+I1ghTr4zl3gWl>YJg!wEj3$>oh{e~ z5+KoNzva48o-LzK(luL@suTA}nAE1^<-Lsgw!qOTbGcM$^pn0Z?0srJJxhr{4!aVT zeQ=J5{Kr?z7cK-Obk3eFc7Io8<{g42HyxuXGuO4RRvq}=E2Ev}u2T+h%mAn8rit0D zPKsH8r33%cz_A^n;EBVfYxFRTI^>j@7@i*5m>@);q^9!-M!8n7z8qAcw>l)T=~RH& z{nw{;Q%SveM2-2ng~uUrlhOnpyC$79+y+T)N1fb(npmSs#2Q*FW(Lh zDx688DgfHUl$mGDrL1(j?(>NutvUI&=Hc5K@ok-#Z+lL@?RogNM||7o<=dH)Z)YC9 zoe|&8fAbxVF+Bz0UEsK9&Z{bA0XcpoFzb{{zzKV?H&Q3?E4iCe?XKeaC3M1$TBCD%{Tm+V{7Au+SqgoW$hWGvgt%{UJ_BX&Z_CW1Z?ofB#?ry zQq{^XX9Nyeut8-;aLJ7Zn5g9;om_u?4qIP0;dL-;;H+_64MMoOx3@K!ck^l#MiJ3hOUpg_u9u#bH#n@9 z3Lhi$eSOKqfyato?n6;}4fVJhULAggX2H@n_f4}%YD+yhPpPx+hjmoWA>0xX)L);z zX0Cvl7RJL`V0prP7|+aY?5$okeUfJatmnR70mCh<`G&^&gw-z0G?adQ3Jj*;N-=9? z5^%X|#Z3oc(UYcq2lfg&qHystVVRdurHs3NtC!$DmY|-OKl$eGKh5tiy^NSG(r{h1 zS1hp0#@;&}Z+qKsZR1wE6_WOY7RI=}v(xl;9(Zlv3w?0lHXiP9\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_001/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_001/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fffed5adce7b3e10f27bb1b14b27fff1945909d4 GIT binary patch literal 2851 zcmV+;3*7V{iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOLzp z+r|}E8rhPaIChe0CuuSnj?&grDgq!#Q5IDtrbUXzm^TxkEl1K|KwwEi!Yx>Uq?EXq zw{`|^LErit`q)3xnZEW{^sNs)3sTsnWF=0OXzby)yJye&_TXUgE%3+1zyAH>h2$^# z#4){74{@dwAiuBa2y;CRBMyh2=lVe$-IdNqItYhW5Puu5{V9GKuSU!22>IA_ow)XJ zVdm~u>L-p?F1ro`(=vloZtQEG2b1Gyc`tPIfH?U!j+Xq;2}~Qs!-eR^BN!OcXm9Fc zBaROEp=%@l*g}0^*W(?{_ps`E$WcAhLzd|v%$NI)sd~PvtHIEB!@*FUGT~Jm_KuMr zsHUL`LXOvcqykt3@&p)Cimv@Q}|TKE=GGIKjK69a{O`8vt&URdGyn&Fh;-L-{WyB- zu_P^Kg0j5F?*2ZVFq)P5uO(`ld7BF-g$Uo?L$pejw3c4>5`HJ~OT0On zq+Nq^EP_s9lDs|}* zq;R?{vsWzeUj^AbmnRLFEWePIYNMi7_p7^VTLMlua^i+qB#R~aYjq^$MI5bP${%Nk z0o+^J{aGw642E1?D!2B;IC_^}nGS$fr%Er)a;?%(>*Zz*Y6WhcuFQ3nz3c~$dz;kyMBUm1lv=$o7;t435Po~Fxbfp+l72d*GPz9oHWIf z3!p#%4id{k2~CpeV(Bw3(EJ4F2p*iJSo3uTA5$BR+E_!4;M4Az*Xz>|dXcj>Zp&!i0|drU%fjZzz%lo}pWY%myMgN7ZM{aI+5pCG) zh&?wnVCMI1FU4NZrg*?$kK$mUrFg>FPgonqKVaJM97+O@=I|Ni${2b2g!a25irKZz zty*M^PADEDhATAaqFrX8wpXCIz=mTQBe$30uYwdhArsA}Si^MvzRkc9bmSvm^yL?gB1JJe5{Qa6WZ^3Ax<0Eo1}Pxz5aRQ_ptMBZwaN(K0OB@D^F7FS_Z|w zIY=9x<_BrRN5?6~V=u*lO|jvf46=ragZUmdK&bcUEl7uh#&d0U0&H6BFf`{lLK|x% zG;7bK!EU$HsWufx8q}J}qx5D+g{MDgm3tSYD+rReo=F|0Tdu3s=Ce5Z=z@WdK*Jj0 zR2_q@QdOUU>PfWC;-(;gKDhh5`~sfA6}2MC?RptR!mXJU$bx*kLlr<<2D$jj;Q>7V z$pgSb$A8&w&{Q}!=Rp# z!{>|QrY?#(b*ukCQwzGbscN|`Q7t|w<~EU*-!Q}t$O4GFiqs*>Vouv7>PTwt#?gnD z)sgAwR%n2{db`p3Qmr-GYP+m}KHO$ZZTHNyERFZ9a9}!^AJ|?N{*x2IP=s-OiUVY4 zVJOfn3xOPaf4WGys&v~lZ$B$Rg5G6i+-|)r!)03}f(w48D*K%Y=q)=dZWL!yd$|tg ztv1Qhhu?gY3QP-OOb#R*9%g=>9CPHlvRfzW_M=y;+d#L7yj>(hYffbS;^IZAcAmjO z0CHN&ak&TN?7^%8nsEB4KLg$W2CV2ES^`p20&%`Pt$+fEz_*_&s?<^G|j3 zdrVEj8KKo^!>qfjY%#7usoaAFHM(^Llz6@Rv`btsDxEI)`4C3bdaGPfo6?>lfvQ!i zO_EVa<{QH71k&j?6$w_A)Wp4u!j?#LQn2?gggrP6A07@ft9!_BeJzvUT+19jKl)WB zsiMTyyO*jcIT<|a)}-cMtD<&0b)fN^VGww@#Pc9kNZIsVgX3_ut^~CNl7kYJF(}#1H-~s`hwo`y#5lp+H4=x`Zye=J3?~*%4ej>HiTD|qCT#tvR z(Fc`BT{+#02rgGDaE^nT`y_cI;Az2d=hBHVxrG-SWeM*850Xm5p6gn?t(g{coVx=N zr^of_VRd6R zteZ|a$riZ{j=W0|1g@{=H@V4!qFO9uXFp>z7-k1>RdkWd!-Hd7NWs=M6 zz%0;InxX1=vu?xB?vaeAsYSO~*i!9ba<>XjND* zKq$~;q3z(buUJ@HV?B_^!+~%Fjt*A7e)-wgFH_>@#R(pc607?OsryIknae}O)%~Nj z49q1VGeGS;Vg^DUT?(1II;41YNbx!$#j8W+uMU~NPRRV#Aq!WBEc_oKNqtOd_ zhn$>W%@F4b<+%QN~PxSFspA9{vlS5?X6f~i!E52q1$dI9z ze#u*sXW!eJ(R->I5EFdu&q~BF5XKb+W%VIKPc77@ zuA-oL^Xf_1%OWA$Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~c+Q`r^`P>xZ$i zx&h~QYTAB6S>IiKZnLV@R#Km*L9yRTrfL8$Cz9X(-Ntg|^XyqG$ckAEXUQJJ3;xg& z@LE7m^((BXHI8TliWqJ{a0Tu_#G~keN^-YY%&V4L=LKv)#BgztCx+K4*N3b)*)Rjk zH^9d0gtm&~5rO;k>CG5U>Uti-`TpA&9w!5}-(Eq9J}fd1tR|^_W=L^ D1;Cq= literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_002/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_002/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7bb6f902122f153d773394c167d72ab16519ceff GIT binary patch literal 1293 zcmV+o1@ihIiwFo)%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpG-I7GlHV{7@W=4Zf5mur?}JE4 zk=T=N*B*Q3H#5JP`FZtsw)tN5xQ`?+E(>TEya2%^v_X!-OR5x%cdKXk_P_a~U;LFn zbZbP?9K744ndGF-S66AdUN8Vb~dAgnHfxkOXL(lRe%jhjuTgwh+n+9+Q|RV~}X;*3;1lGgF8Xvw!81sk5HJltmLL;k{7M&D zZ^}Fm8KOl|<$b1ct>(xTlE12}3B`h1?;b~|11tlBCds_sygO(*%6!YTLy2;G*`Dg4 zI=H;?tdvRR;JmloZdl5`cXwyf=V9w*0mR z?&VFi2dtguS|>%0P9R-qC!u$D7A87~zHt+qL=+)YH)h^?_t}jNB3H4oP|-)c*FN@T?DqLcDh&iK5-2Jjy>mNtpQ}cc@vr?M%NS$lOn}>M zy3SnYcAus=hq}hTsDee^dQA!A&)jM_jbvlx8M^1T$w=8*5B(LFHQs7@7M8W@%IQ}( zar(bzWQR1-#7RjooSmg9yNL}&hdQoonoF7BRT(DIJGT{NMwJ@N@62st)6rD}!o~hl zyQv!r`hMq{9rS*u4qc-JUC-Qi|I3xokxfITYTBB1)s|WI)*H87&k{oQ$b`P~5DSS+ zIgYjfqKtEHZRlU`+&WIYoQz`s)fa#N5uQKY29cG?5Q(j7h+#tt4YZY{r-SU6Mp+kn z!_y(8!yb*Fob{%V$tTq`~9$4S&14&&}%kPf4y3qu(8v(sVR zKY@Pi-{Ox6mg9fQ0RI`|_Nt3n literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_002/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_002/afni_proc/_report/report.rst new file mode 100644 index 00000000..d58070f0 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_002/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a005 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 002 + diff --git a/Afni_proc_through_nipype/_subject_id_002/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_002/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6b38ac0ce5dcf8952887ff135b26a90dcfea3145 GIT binary patch literal 2890 zcmV-Q3$^qgiwFpQ%z9-4|8iw>b!>EBVP4eB1YB~zoffgV(h&<2r!z8{fEn0dgh^#RAKH2TcwE zlK9?5)lq0#W_Zd@ea-Wra}uu~M2;R}CEq9Unjbl#X`^Jk5?^}+4P!Fe+xpZ<;v;VC z+K78)p&?i|;2h2O0@d}9qk5)?EYm>&S06g2>iMp&hGXB2Mq@Rzgj0iP@CxanY8oof z3!JtP1Urn#*TT#h@sC^oKKbu=@fvar1)CFpB=AD1P!tNqvcf;8m9}f!JM2!ixLvIz zSZreY&=Z?^O@1skn@N0w8<-9Up&Ua9Wl@%;PFro&+x0`Sm&9LKuC7^J2<)0o94)I zePl!)g!=Yz<4|ph?Y`RWi3ieg5?_Z_8x_EN+)I|e6q9(h$n!j|>BvgE-h!H6c;TSH zmxK~D6j{?Z1C1TRPCG z>>OrJuanC6aoiSDI3J1(affbIo_C?|+EhEWGzZf4+Eb+|J%SKsZkdBhnfp2{l-Lq3 zKxg^6tcb0KDjtjbYF7fAt`&uCp@N;o@$2*?<#`fsU5FoRMu3k zge1O8W~K+A(-XTbDM3!=R_810q#-Eyg>Yj}uonihqc3!sca5T=sl8k(iuh1z{K z)ch0|F&>@eSo3uXzalakk+H@a!DnR(k11>uq0l0o!x@FoT!O2l{>=0U&XGYNWw7N_ zn1)0(HR2h>f{acT24@0=iOezP6*xqQ{Vs7! z_e@ftqDKWp*NACTlb9Av2{tH<0)q@YF^BWi1Yf)ng%K&(bc?;zG@|+sY%j;&z$SP^ zVUOT&q~&-<$N9#8yhk(`TgKoe)g>w&b-y37rr;MU<^jAWplK zqqbKjxJ(a66(;T=$6tpzbRudrn_w*<{`)osCq&KA(uw@Ur0Qu*bdIbX8U)UCGSX~n z_K=Fggu*1~nx@aUNx)GKhZa?DmocK_1_07iL|W7jeW_RUdV@H9Wn3qE?4<6!FL zIJ5~iypvJEFoSTph8`f&hszSU!a>ueGTi|-ExH+sOEy9|&?abJo>PPUey=CC6^a@h zw$r2ZdQXMZAGpe$bF38z$va0_y}035oN>}WED|80@jmqo7F1M z13$R^to|I%;D*|eLcl-rW)|o^LJn7|2vuDWit2;mj;5A% zt*UCp2ZCDJsT8Y7D{ULXHbeo)T|??&X0gQWQg$S@_mlX;i|ojBbSpA|UcKAue5oF` zx@xzs06*NNL~ZxXv@DJDtY~C90XMR}0{r94z*vCx;4}!4U4W)gvn&L3?ETD1SycL6 z61Sh#AV7C%8n@r9%P?)Lm~g=-W7+S`fN$9aVY@P?+Urda?{smLKK$mJoM2ig2=HBm z4aUrG(i@K4RQ8*g-F|#IyA5><)7w={w3bNLFV9bk*gJxY0K~LbWQ#j6&uf$yP=wn@ z^9XqVTj0@qBn70l1mt`@%YZVFz;~Z2s?<_}PWPLb^JhHz=TuI@9ih|eLa*B!bTV#2 zs@wsGTK%R1OuQ*R?PJxeO0N%kK7Qef4W5&7xG*-3wWi-V7e~52f}& zr=j+HO)%rP<1qAs8pi=u!D%ye4R)C7gwgQbkj429YS*4L;PQZP8mm|_EGcY!qpsA| ztlBxZX4!0BgR$l#4z}yi(@r=v!?)-ltF3VpEw%7<%_KWAEm=*5;YI+_Jrwu*jrvo_ z06j7^_G_>%T^Pszcxz?l4Vwr~wc5Gtn_HUY;ZN51)7f-s_%CT8n&=(oT&=Ea`gmyy z&KVHo0=JNXrk^Co|5{yHQ5HpJ z!-jY;FfwvN22#diEG-B(Yd0C@z_bu^?@gi2vM`Hni7ghnzzk8r1HIY^1>F1ri#(;_ zrzOPcu8&yn^xhVOoo7l9cD5MPVIVbNP==X5r!jj>fUF^_LRrmKY|L9XQ&IBw`#1dk zG_K5F1-ZqmAmvf9ETkSSo1R+iMj<#hoIf9`V_-fO+PHsT^G5;g(+|1wSrFovsLvNe zmZ=cVoh91@?Nv0uPls^YQ}%9e^Gh=jga+8Tg}=!6!QMp|-L-94%(@n$4b$sQQ?n@`Z`z}0*secSgVFT4qSG2hr!yo8eYY29JaOh+DGUyM6sLRh!Vg|3XN>yZze zE;Ait_aXHiSWis8TA9TYKb!nDi3aiYG~a{tx%}OH{lY3t;(r=wh!t$$?1Kfp1zCcB zbO=<~(jg$(^ZgcMXrYFy(#@4&OdHcEhD12a*i3qlxd*85hi~t(_!QE@jd{c7LTWKB zc;FXT9QmuPw+CBCxN)!HI_Tae1aWQNJ&9Xa`K5wXa-=dunyprjjs$jS`ax)+34+Vg zJCr?1EMG-Cww0TA1HS8<6J!wWD*p9@BSQegT${TIrzOt|_(zesxA@|9)dBH^IlUzs o0g!=esmuXaScCPPPI^1O3E`d~M{{&If};WZKYw~8Uyd3808D_Nr2qf` literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_0x828dba5362000ae4a98c5e5894950bc2.json b/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_0x828dba5362000ae4a98c5e5894950bc2.json new file mode 100644 index 00000000..f75c36a1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_0x828dba5362000ae4a98c5e5894950bc2.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "002" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7f66aa46df636b730d5e7a296a864a9b3daf0372 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tAnMwSL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=fzr*x_y_<1xZNVD literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fb4ce4470463e1e521792111eb0c9873204505d8 GIT binary patch literal 1538 zcmV+d2L1UTiwFo&%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&NqRv$40{mV zhuB*x%a>%yhGHlXq$sv!5ADOS)F3E{wirvKN>WbJBEa@itN`DpJ#7DIzhZx7hm>q5 zF1)65g&-2i!}ERT@FRWr%e6oLS-WB%{W+uQX-eFbrX;3}xP-ZTP+UMLtM!N{q<$2WE*HuN zlEy&NS75u?*lz8#Jb z*oE^-jI6^TB0+yd?RJ7y8gms>ANe@w69!mUANP8&GHIN_YQV?$ zKnMfx`+_8VK#)<*D1DTi1NyAA$QUC5krInj1l$TXCFDH?oe>rxf(bB zRxc(-R0M|z2*%hSjjr2Vn&m{0JQ#$Lv>(3$xk<%S#2I8pNQJE3nAyarAR=Sq(c76c zs}^HLfqjZqbS|j-!>JkTGk(m_fCy=pe4O87L1EcpFANC7EI22%TPYT>nLwSOCX=*r zBJQL-j**PbiiMfLRz`ZR34%EpbbW~Y1RY}v5q{F}jEc<4jll~qnO;sfqh=w>jk5q0 z{FsF2=t+=`NthrnGr|H;{9FT6FS8^uD}>Y3uKUpAe4&vu5Wn450}LB#q0#hqw_zJd zfJCGHmg`D+wv4)@Yqls=r|z*Zu1&~``xy&tfTL69da2UrXMJlp`qXqiOGz*`yU{Jj z;2aV8Pp=lQTnS0nxp=nN{auxre*~J`bd07}gq^snh;ugXlhf{vkYVb+YN0k?ktaLi=^K(<0GxBZD!nZl%+q^8_){J~xv+!+=__i*~w>=}@_AGqc zBfjnb<~y8YMhe1vz;WN4S5?YFa`H%E)+1GKvkg!IkF$iyQQvmERy*&(g&&ziuLF(_ zE3ePKczre^J`^W-=vb=_OKPLD>AX8+Ty1n}4$L)>4p18+Isn;u2eL68vN;{HISXWS zI%I1)WNQ}4)^y1BbjbGqfHeA;O%2AwM^b}vby?CMNev$iIlCG@7;<(sychC<0-=I_ z&oO4p(=V-YV{h`vGAEVwH+;;owedo2Y&wOq_D!L(=|pf|5>d1+s_C)>tntSrkV0Lh zs+B#?2pqCd29+M6O7=V`)fR_za{bLE%KEx7uS2m0l{Jp*q4d1QSFLs(N>GH9fND<; zD?Egtg4=dmZZpq(y-s_K3xdc=KvG*sz1260Lf_ujWZucEQ8$W+zFC&sqkg^cth~Wt zy-?IKGC$DQj2+Zi(aQq}O0S?ESHr8rZ_q4Q+U9|27EW!bhnER;+WoMO${fNi5kV5` zlh@28D5iy}VJ)ycWdY1*<~H_LFPkyRGXbUNfnI`wTiD_o8tdmu?V^~5(AOrwAO$yy ztd&ln%3UdLItYuNH0^t^SI{wqiiPMTZ~y+&Jb&p$#B7j; z>$1IKLAh+oduOM)6Z&|owcUigkUzjN93kGeK2kH+108Ja`V*mgE literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_report/report.rst new file mode 100644 index 00000000..7047fcb1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_002/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a005 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 002 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 002 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.013305 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_002/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_002/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_002/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fead5cfcc27b60b1289a9c99a2a7c11448372136 GIT binary patch literal 2847 zcmV+)3*hu0iwFo&%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq!#Q5IFjrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z``9Vog1+UskNrvQAL&Eyf)sWsS&3668hdzl_wK!CFD@2mfxj&N<6oaHB!AIoj_I9x zh%=o4`F%}CnCod6aX9om*AL?8u5>=qK{&L6_`7)RukovRHCk3j$j7GZ#I;8YGk3RA zKXJ5j*>xD0mKmIKV_)+;m>fsTd!eHT#L0JYwB(0QVA?1iE<`sT!@!V6ds`nHadf~B zT^sSo7U~1L9`9(rhgH`@j_R2nvP=hIzT9_A)$?6l4TioO4u6G-!mN^@;QV&%2ipGT1~Z4ZkB7+P8>b7TwSyH z&@m^aM|@y=JSXi|v!u=E#KLB7J%P#i>xRMqZmZtvDAi5_aNvhXcP-bCqj#Q2va;K1 zDxDUvxNQy`*GER^LB8+qS88gb+U%mmWh3r^_;X z#RC6zkj-;>(tyeGOIfKlDr$AVx~sM&;B+G=Ziq#)Sdzb1M^awK(fXzQadsHMy_Mac z#nQrH$knBCYfp@$_vw}C0BCip^wKQXDh;(>Zq}ey;MVENTvyr4LK!bUX_19r%E@w9 zu68aZW$|?`Zq;QqsY^ND|If{Z1t0GSCBxhia@+Yr$#N1aF$}t*BN|FZ8U0Q4K<3-3Je}H*rrB-MJERn2A{bUZ_@rV z)1x>=289e^%V#hPscRU?0a^KkC_yY8H^Z=8SFDy zW0nF>63XAD%hElQHkj-&3DGr5ZER9%cucXuV1x}Cc4YQvr3q{C1`I~DVY4Il+|YoT z-?P0Gdp(=t0fRk?gMpUf31dHDZ5aQ6X~T0U2|Sv^XOt^rdUBD>FIVZ>mXbWPJ|+a%yHg?)?Zw+kA@rom#9Hcl8LFVA4= z$Q=w)>{IixHeyU@zw3oKZD4Pb;tBTp=Z!zZ&bz%Ol)m`<9DuAmNwI4g6#M2NZFrg= zqzxY(rx=gD6bClNhIcZ^8YT|rd)NS>-k-N19S$1Lwb==>tc}pDJ(C8z z-AO#v^6d^)0BsrM;%A2k@cbtaJp1tI z%Rlw;mq`bCm_kPe6iUKbC4y3F0xfyBQ>{X@hrH_#_(bdQ3i55!0cD0kJtK$D7sX9o z6m#lU|AD3!bZt}Ba$BNWd{E47A}zmRh#Qav5O)=+LzKmwwoBBJ)ZC4uk1wku)6uQa z0D1LpqxF?qYqZsNSpj{x&6wKmnQ2)X?^)r%bTB`#y)67ECxW2}+ULBjB8LT_h3PdZe0N-Uavmu64#4Lrwe{Qh7q;iDp%B|w5Ld*YL#k}WE7J5 zmM}Ykbh=GNf>k9oaqptACDNP}?EMR24-Ugehr`V39x_~C%j7rLGKVjYewRtAC~@`v zr7B8J29LWnskzsxsNGH-X#8Oq1RgH&JV+H%HhtIN`iW17Mh=J^sdsR@^t1wp2XfL_ zB#z;hBIGM&rL0c7oeTFYH@&WSsQHM8?K<$Z6CO>-Q5sKsOZ-Sn7+y6@t7GbA+B3y) zB7p4Hs=M7v`59Dz9vT|=HLy!=jQ#K5T3GmjO@x$M=|c6*m`>~P7aRQLIK4LguNk49 z*d69VudZwQaPAUZAb`_$3h--!X;<{Y<%5IQr330+a>vL|rM6nDw;q@4@$fYIsPecg zr+X2>CaO+E;Lks&L=^$OYp~?=%>~Qz?v=hb|5rjV$AeR|LbG!{un%gJK6~u;SHcE^>Kz&@FjB8YORlK7WHZK#*r28KzHO z^-SWwMK^tfZSoL(+wJ$0!65V<-GygMGr9#&20!?rS3Jedtu5F`md;;yHN#$X({#Kr zz{%^Lcl)zip9VZlKC%>3IWwQpKzb@l>kJ!5ErrUJ#a((MfVeLl0!ZS#`TU98>6p6ndCA%Fbg!5 zW~e$It-|Q)If?bm3J}YF^NJ@c;ip&)G<=e6)D$v1E96u(LQa6W0FPEUaw)ZdE@uYT z)&L@JXXP+hS-TK?h7Jx^TnD3I1%eJV(;>f>i}A|Q5vMRy#B1^uuftbN`HFAKH-AmO z`Rnk_r+o8o%C~S$zJ=@XEu?%4Kg{=h4jGvet^mh9A2ys-(=pIw$Jd+zS{2p{5DGL| zXgfIVD;Cz)SP$g!a3CCkql1-iUVZV+tCaY8ae{}V#Oi)R>i*Gs=JF76b^mBB19M5p z3{X3dn1PT-mqO;Q4k=z8QoK$`@#>KIt3&3m6Ec5w$imej3;#z*QXki=2IAposs`ff zO-cVu)$o%;UcVZCa>(mf!;glXtH8khv2BceS;BuzjB}NXTNc@=5`X7^WZSxb7~Ega zOeasdG5$FTc)sZbt1A`PL9oe!PMLWGxg!W7`KmReLr%_b z@cE3G^W=?3a?Cd{sJYF2fd{d-u&q~BF5XKb+W%VIKPc77@ zx}uC_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~c+Q`r^`P>xZ$i zx&h~QYTAB6S>IiKZnLV@R#Km*L9yRTrfL8$Cz9X(-Ntg|^XyqG$ckAEXUQJJ3;xg& z@LE7m^((BXHI8TliWqJ{a0Tu_#G~keN^-YY+*B>M&I{Oph~eTOPYkb9t`AvpvS9|6 zZ-9;032ha}BLes7)0;7z)b%`u^ZmCmJWd8`%ip=80y9_F*Z1>V9J}fdAAJz!_W=L^ Dy@{Cm literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_003/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_003/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a4addf7e7f826fd6e65bf1d4f4a40b64b576665f GIT binary patch literal 1291 zcmV+m1@!tKiwFpS%z9-4|6guzWMwXJYixQhbZu||rBzFh95oPTNjCe+CYy&6ggA_r z%dQl9dLEfcKnO)bK@nj&1mysVEO&SH*gI~!vE4JfL6P7R5y>~q0e%d3{uSl!o(C%- ztwfJB-FDfouc|(O_4C!=+0J|Q<35tSJTDKEQ+Dp%2Tv9TVwqOegptO9cUK6{yt}d78PT{u@NPSy z21v%WcN>v+*HR^OKB>KJ2{l15&EUpd>1i(1oCuhKKxofSo__1yUS+v37bb6VX+h^S zg^R24NMaSqxj;ypITZ%q`(YL#Kx&o7C~kC_DxiBRAXnNZ2r?`%{57uK?u`bIhH)HY zjr6Dhzlg?ZeuyZ~cqQF?dxR3#XZp`8% zP)>r$LnB(ssd(+(9b;8Vl*G(vV@bVkh3tY=gRbPtdb={AYJysh=u2wZT2S{FTPr!0 zYA(qPv14(7NMzvcd)p&)Foyew;v{fSRlu8IJjF zs@)U?$3I-s^Q&feiG{I8hhHiQhsV2^$9B7S-&{fl)+W2FNei?fqn9uHQO)L7^7hv7 zc=zHmrw6Rvc3U??j?N%kolb&wcULaDh`tRIMIw%anlGaD?z2lfM6RN+P|?jy9QVe9 zAs&325UY{wWm#x6X5n+ z)mhry{*w&*P|w)sb+V}2YA9j+iMtwBBiUGWg5kM6GEsJ+p}*p=!CMbc!mv5I4*KO~ zg8r`_*(Gf@u~QOEXLqg3?x3LPaF1)B=3J(@RfdlA&g}-9QI*E)cj9(XbaX91I5=37 zn?_JD_L~>{VD#6U)U}6T=(+pue}xhh*|b!uyRC_8S!VfLZ`@wfO9<5y6LjSsUL-Q- z*xCY!Dk-?NLBHO)E$ny&nI!(JFaG``Jb$`vB5Ri+6T5X2LqQ4x+UbqPeLC(z+<#1a zIfcPE9cPdF*(lC>@!;VQHLhNdU9zoT!;*>XWc^{1#)I)V>5WF&I8J*ohVd|eJWhs> zV3_!~_+x?<_@6Prf5tfepR(y&513L3km0$D?uKdJ\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_003/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_003/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3da72079ee21483b2c86c442caf5baba3d69e284 GIT binary patch literal 2539 zcmVb!>EBVPRAsS=wVgi)q+hCT!l7x+$u>eV_NvD164BmqF zslOo)?R$Sj|3Lpr&w>4z z#?cU2m$K@4c3dYu5T+3dLl~T;>${0>#ni};S-KV_e(ZQS8?U729zn;L&34wB+F80Mjsp*i zZ(KYC?*^ieqL7$DhJoe?Iy9zc#gW4g0o1-AR8fOLD1DlnceOA>FT)Dm6(G3qVo@$vi+6LF_rI?j?C*56PR~$!Ex>V8h?@ZzE~@`DK5 zNeHRFy5DG;Ev4NzyFF!B-OtkV(Cgs>L{CTQ>I)@HSBsJ)QAtNP+VvJlz6j$%K`O~5 z=qL(Knus{YvQ^o?%c$kKDK@Jq?d(knU$>wV*~sdsjsWa-x;tgM(2 z9Ep{xbiYy+-{OPF@kb(|30m9LwP#=l5)Dd`IM2?IxOo!ccj{2Ji~FrkL)}%Co(>K^ zbi8e6kkG&yivGmtbj?Mc!H+yJ2vBLLMh6mpCAUkh`N$8l^lbN8BTGL$UQOVL)@jaz zUT4D3Y2J>Oa4{8|;u_y;JnzETwJADqkq_m1?x~@vk06Efu$)1qEWV2iC80zcFj#-C z8%nETD*MWg*;T=(b47VmuFzm<{yII?c%G$qPvuYWk{GsCVSh0fO5(AgsrAmToTb;< z%JcwqdJ0>b^=6}GYV~##Y6W&pUl;nuZs8s*{NoM{{8UcX`?}IQm6X-@nYf_oW?q+i zw*TMrD=QJ%mTI=MEfu#)<(li~pi=Y3+mciZo$a!;RVvj;kjpn~_7ND^^R6waShF}B zL^&=}?9I(qx5~vDNwybYv|W<6%B7lx=oIlZZ_2d*K$!v(=bGgjp5?>k+P6ZCq8t|~ z9vv<*iYyMlVLFKExMRfdVVT2Y4tq=~cG=)~#^J+&;VP3KIw8YLWHZP)>_!~sAv4X* zcnG;*vvZBXq0C{Xa~#XuVCEMdEO8WiOZ*|Za9xF}7CB^+@Wvxdj_c*nX%-1vbPE^#>U7#?vrWH=t7 zC7yBmGhT8IuPShWXfzMJ;nmZyBCq&R1x#paU*YFDx@$ z=BMKtlVGsK@8Tu&6K*z-VMJK`k;lOaGc$B8ray5wIggpmk-LO8gENcGG@IH>e872T zanWLL$Yo)|VU~1+ti@*%aI%C$my>&C#IR%Y*kO&goKjfgFf$a4MoSzq^(mTgDoh@P z30XEsI9uWw35Q3GKf#xG>%LU`_M0OBjPmUg2d>R<d)Z}ZkP>K?`m}*2^SVrpaAsk3S$6W9q8iCS1;lGrw5+*>h*Vj7?SUD0Xxc%9JjVxSMyv>9Uo2JRswK-s^ZxK2GRqdKny7eR zHY@ik#VSUnO9XY<`CN|Kk%dO4}v)SsJ-MRt% zaEnv*f+=dI0|~tR)G*bS33R%zQO-Z-(VuZO33r4}s|%y9-sX$(4wT9@2&mQ9 z3}E7#^0ZG)uNu8R*tr2crq-!9%(l8~sK9CsrA;#m$vh)1ZXmsW+fX5@ye6)lB({{A z(}Ml|iD_THN*=x%Z`|I+b`YVBQuWTpt7or&vyoR(ZtD7}D#~vLkNQouz1wM+{hkJH z{B9h_A*qQXP!(D>!@w4XxlNdj-VFs>?_hTANdqnq^ro>&4a1hA&Nu2t-JFa46MI&e zuPYg&2#fH!jzjcT#4~z}CUa>`oS@vp4|TKZm|K}k<``}Sklm)T({I$DLIqffjf8jL zUA{5)|8ZtzT-TzrI(FqUY zF`P?0b+2c8JV=f~^mdI-f1#^AFfYmT4H3Kd~fpl>OXBn+)mRhZqYn3Zy2 z@iTSeabX0jV#z`Y4!X54!jt^*=bMjs{DC}2*mffN$}`LUnx2m^@#rCXHW&``&NzvD zD}b}5onC;GA&P(Qi3cLuq&^(IbhVQ~dfxHFBqsTD&*kCb`N||Qd?WsCxtjaz^UfBfN= zK(mPA+l!7nM_P+P0-gBfN6!3uK01sXKfZmd5%~Dlor@6YVtAIeKIWy32}LH1G4jmH z-kvNBoruIPo?tlaFLC~4ss1t6sjuQ<7<{iIXM$~J-K4K~BAWufkZX%DVYMZxL?87Q z(Nf~@u@h3lm$Mw3KrvTKWf5w9ElA>g(bKO#^k5odi=Ls41K1LdWkkq{v8{uYy(C<$@~m39$Uc7lE6TbNd!@IU)SHoUnN000qC B{jvZ6 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_0xf39e16cd9b4e465ab9a6df01d1bca5e0.json b/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_0xf39e16cd9b4e465ab9a6df01d1bca5e0.json new file mode 100644 index 00000000..375955b7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_0xf39e16cd9b4e465ab9a6df01d1bca5e0.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "003" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..17739e4d192b17ba6606b3100544c7f890330bf8 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tAnw|WL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=n~fp@_y_<1vp69a literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f4b913929bedddc868ebc6e1255526ae3fb44d7c GIT binary patch literal 1535 zcmV!= zgLhj;`;1$+2#NrPgP^T@NDf7v1wl!p6}=Lvkkr~vV4%GO4WL`qL;H{VEBaSDq_n%X z12;}Lf?5H!-KDKgx5yVgs(=Jc7Wtf8x^rVA@$*`HM%5PkdVd5Yd)m0!uK`Pixj}uLSiVZ%}6BB+>ap?QhP|! z7%27#0-cG(dHiD zq#-~`7*8{;rtz-D!lyB@4*dxH;e^`Fgz7XFI%Xd6s6PabSeG9S2Dmb5oZ)KV$M;Bx zBJaBr5-|c|R5M8*gA+iXRu&oO;Db_B9ueeLvZ)~NXzYxr3j~q(pGcj8vLfyD76XqY`Asr=vGBWmYYw znj!m?>gYsJcgIsRKIGznlMzT|mVBDu1IcjNaW9O3Q|_OT+KrS-+)SuWRFg^CG!eH_ z5ywQuX2pU`QY)i;u7iR(9EBc6en<`|!w5fWw~UI+%1yybFIm2v2+qtxR2ydjDR?mi zC+I1ZjY*h<7a4FL6+hQT)vGK?%nH#owd+3iIA3by7{zb*)rjJTT4;A#TbsBI6he~8 zek<}?b+$~plxwyq(?{-sG_Fm^i#r+jZGe+g=Hp7G(a-sf@#quN^)v;4YIZfO#_$}G z#ZNC6FI@^CbWWcwc7NAZ=Ix^mplTsc~ z<=|f$ICdbEB5{OrjUL8U`+{*}Bhr0q6NChn)OH@?EY}LwSED+P*2g3^oEj3l|LVAD zB59W21Vul*|HI>FX7>G7o8YO%wQ{u@)!b6p({QSfMgu<~eOP<0YmGDD)z{u$O>hOe zhM)t=xOvAysan79K07g`Gb7*5EPOi?zMYHm?as)zI}6|Lgm3qve0wwU?ajisH{sj+ zZ@%L>W~3y%jU0E(c~xgTfWwE9@&VLa8$E>bMVuvEP5L%_jmAk2F8;{uwfg92ulDNr z^H;|c;$v~5hrYF1x1`ql8_wH9#?^Yi;ow{Y=^(W+qJxnAw;UGy4cuWNDkbrdc|*q3&HI)bs9#O;Y6$Z;1qx*gSj9 zT*6{nni|#ut0V5?d~R-IZ}Md`rbH&O^xVytu;7-q_{PTCiBh{PrZM#EXTUH8SIewb zPO!>dDQ`N2%7HTNJGfWK0mF-zG0VJ!X>F?OH~9kI#}YE|ipSsn{ik{U$`=W@K^m^h z_KJn&vMKMKu)78AO+VQ3deGZ^K)o%x8HBBN(Dr=#0I;NAwf1<2tI}+iFpAjgA_^kF l|6w$ET>!?w0Rl7|U!^dvd8^yvyJqIO{{pf2x54TU007nN{ZIe^ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_report/report.rst new file mode 100644 index 00000000..70ffa24d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_003/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a023 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 003 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 003 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012411 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_003/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_003/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_003/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..bd549147ca8b2087c3bdfbea805444fba5c11009 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ+O z+r|}E8rhPaIChe0CuuSnj?&grDgq!tQ8HB}rbUY8m^TxkEl1K|KwwEi!Yx>Uq?EYR z{>%*i1^w4f-=MG5nLa@up=Ut~yOb=)sS=Gn{C4;3x$VL3x4>T(|Mss>7m~l|GspB! zJ;a$#fc(CuBh2+Qj5r*6p6ds3bhmas(m^=1g7}Ac?XU66cr{v9N65#f>%`TE3o~`M zQay3Ba#?j4n3frwa${ffJeV9u%X^`t2SmvaakS)zPGH(79xg;T9>KtnT6v`r^B>U?atwv|6#Z5dL@ApSv$?z?JSa*V z#ax~fB|#E$F%cV?KFlP(-jE+x>h(Cf#rI5yhkOnpk8(wpYptf*C^bvfN+*uKvRqxW z_|P#Y#fN-gdpuX$tz=1?&x!fX+H8bM~gW@5J*o; zR+^;-^!(ZjdRak&a0Ma9nZAiNt`DZ}Rl5~g*{jKq)mB$&ca=E0afl8CJC5$i&{^s# zk5##~`y`G&0>KNBK(d` zB6fSf(JI&WYL$)*4n8#P9kUmbz{(Z*iPCDTvpj95;^M zZa*)_(R=eH1&-8P)oIYnwDUufxAP^OnW84{v7^e1Hq2cbYp0gxK+WEGs?=+bAcfPg z%w8eSe-mUSP9hDMEWePIN~5e+_A9$;y9Pep$cYp? zoAhrKjdRd5rbF98uBbEE^%I;U*q*B0+|K8UINX_m!Hy(s=cS^q5fi~UX^KS`K%M{` zB$D|enk3W3;ul8EjLbz@n3b34_mEiZ^Nh zndwoSB7;K4VasPQ3#n?x;u++ET4x%)Gm*hmW*&>oWa<~{rP%lE6dyAw9y1s*7&F*s zu*QS}Ckgf6rD5rwNgGV|n1tvWb!}`?*YKEPgTV+J)a=OY&q@xCSB9?*)|C{Okv+*`t7_%v1zc_q>U3s$dedM z6}f{!ihU|R)<%p7?RUKprw!~)Qar(4|Ge>M*m<`f2*ocxKLj%z?NlmY?JM5(2YkYHcm?^k=>Rjsz@CxAO9gRL z7sZ_VpueT5d0pF7wcGEXn@E#33~>Xp0OYP*>kwu!$L$h!RBP_W(Z`qBk?H7G zXaK!>x6%4qtv1?fyQBa=+-5{=_sp~`jrXi@U^xG0s*Gq?yqPK!A% zw*~9G#6$s2xP8>00q=hcB6^ROK&@E=a=tvRfIN`Ecb_V1t)T*)?$!zCpYrGrn3{w; zLaWh+S$9|2VqAk#xd#C?x^)GZc)jwpOH?l^oi6D47)I23t5jB-wLPTTSCoA!QQ`M_TVslcsR_g?jghVwT!g6mN|TW^t((_MTx5S zFI7=;GkDak)|z{*vfAy`!Hqu*gTTW@o(HNz%BJrcTtCqX*2o2sBlQkym!6d2@<47H zi$pOzQpEXkNhzt*Zs)=?%T3o64>ce0uw4h9cEY0xxk}?{Z;>BqiHBDW)9RRNnf6RE z+z24M)yi(STzU!>pofOWeFNSl561rA-&$CB%_c%ht$3mOW}Z&#@E05W<$QW&`d=|Z zHL*L)gUUGl`pPik$oT5mln)#Kr5^ilay zS5EgLf=lHx+~c6;K1<#Rcv>*rxpX5;9^u7CsRqygM@gk&&vh-{)=Z1J&fNiv)9d>5 zvbsEdRI6XZBdWr4_ah6&o8D_M@EGT3&+y6J?I zY=PV0$h#Cl;QG3>$xXHjY9XJU{fy0Em>s~X=prYdiYK?Z^?+=%=dZh(VK2IAI$jvy z6^^Ox6qpw1lDYbxxGXraD z0Fk$|au}?vT`)dF2L~&zgHf;oMhBYdkYCHic;)DbQ-{~SLq?_!m%+z9A2ys-(=pIw$Jd+zS{2swUi*GM2Idlz z8F1~~Vg^heT{4-w+N5~3N%1-+#j8z9SDTcsV^X@>Wd3TC`TxTtsgLVb1JUp^RRdA= zrcVD%)$o%|UcVZCvdQaL!;hMrtH8khv2BceS;BuzgmdMKTNc@=5`E`?WZSxb7~Ega zOegQzBK&hY;Q6K#tge(@2f-!_JY}X4=#C&rxn+S>a(GTbaII-p8_W|b;Z}r02wm$(l2>S x^6YzCGx|VP10sUYKP9TbK5rB_i4$WWS+{|9!XcwMIwGWt`yZC$u&q~BF5XKb+W%VIKPc77@ z>Y|`{^Xf_1%OWA$Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~c+Q`r^`P>xZ$i zx&h~QYTAB6S>IiKZnLV@R#Km*L9yRTrfL8$Cz9X(-Ntg|^XyqG$ckAEXUQJJ3;xg& z@LE7m^((BXHI8TliWqJ{a0Tu_#G~keN^-YY+*B>M&I{Oph~eTOPYkb9t`AvpvS9|6 zZ-9;032ha}BLes7)0;7z)b%`u^ZmCmJWd8`%ip=80y9_F*Y~$`9J}fdn(7bE_W=L^ Dy``C` literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_004/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_004/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c218319d3699ea3b9305812eece35e0be43ed26c GIT binary patch literal 1291 zcmV+m1@!tKiwFo)%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasv}uw})20`-2=TBA zFNqXpFWF=h5JHtuQAG(4MSTEOmS^V7+F6f1*q+^_C=$F>MDiQv0e%ec{40)UW-mlS zio~q6Gxo84zH`p!@BDoGcee3f^|+5DFD?p*3SNNV5+abJ@RBM8r z@48hYX%60P&`fetXq9-^B8-EkI$;;yeei5%AeL!Wju@#Ocz28N)Vq80oe}MJ2i~p6 z)Bs7j_HHHe?oOg)#z&R6HK9fbrXJjzDm~7Gni2sM5D4wX>GN;B+bk^?=Gx?aE-mPc zCUAW<9!abs85am?HKW4ddn?Q$1W2sX7{$E~Q#o|b1Y}Cv7(s>whQGzN>%F6c<3YFE z#mK{~R+d_vUm5t)ZNNDs2uR5a^H!n(jYLC%=O75H%iu22)UdS7i#qO)|Lv|LsV)pr z1xPY03zlM&;UJIxu07jOWlE=F}EKS;1ox(_{=1ecgIC8ewG$QDQal<0S&3i2JFATup!kuFTWN zVad^l&5BY=NWd7XF9>3*(KIffSe#^3rvw8XlayL&@MCU&jH8i&z$c(7L4bnBbL)1M z%TP{&$wMPrim`a>-6LaFL6pSIXk$sWZh`EYRf8_&!uqf@p=yF!j_3<&*-}tXXIo1- zmTD@=1hfeyU*vbHIhGw+J^@K(vP8891=VmgflyZ#l{a!b)C{%9YygsFLtz1bS3ejAgHG~igNSELlq)kYeh966i2{L}A zhpabco`(w2qNwUVJ8`w<$R(1$x>pm57iz87@17jtH8ALs%3&;- zDTOs5xBG2V#%D;&{dS;LnA-ca)y9YC;YJ2?kRoJeHQTKIyuE{8pZs*W6V;sBZ47&} zRn4X-IR4>=p5N5F3oMM?-T6{U*x74g9-HmneRBgDSeooCCN0pM9KC+sk194dlDD~p z$GcZIIXz(QG}}5Ua&!Xe;&c+UyR&f7LG(?SC=#`r&!YA2vl}}^uA;C|(Me6W+Z!GX z@Zg7pSdC;iGlCO>1U`xmqP{OO`G9nxeIJ0-z%c9y#A1`3J}_qg(DE@XmRW#~v(t`%%Xl^U<#soOx&(Ukz!^}e|UV7CRrRG z_fs0v-eDY{z+rqc=*7pVan*Y4l1=?;mW*6G?GNIldoUcvy`!Ua*iCvcgyA4N8ODQS z7{vY^{+M7n{-+G^pD~XAXKeh=1Ey30q\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_004/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_004/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7a1328bc30b35ac72a544306eecd9e46b55ceb21 GIT binary patch literal 2545 zcmVb!>EBVP{;x$`XoTZ!liEqcu$PZb%5hZ?1Je*C|(hCovW5Q>9*Pc09dLT~% z56drIJOb~AvX7#WT0w|?Dh2*|NQa4|NimD&2$6%j>+6fe^XLQs$^;5bUK9k@Z1rSCn`40EsBG5cNc;xZZg zL4=(ogj8QWY__bn+8J2AzPhg+X6Z%f^>6{AXQK@5Yc)ΠAK!N!KttjW$R=4&z}# zDVNI7QItqTD3V4n)wR|@HOzg@cw}`4W^Z6->4g{gx#DH%6$6Bgf%(WXx_gha^fMV& zR!%66W$E2>`IEdPhHX_iT+W4(cp~Xqqq|?q z((8O>`T)9pl`qX^tJ${nMyCa}0=s5lNCR`f0A;-XsLKLBmy^wbq4v)uW&L#~F6oAq z*QJpi{^#P_T10o1x)vEnQR*StttdO?a-9abe7o+PfT6SK+EI#i zTfjk-<08Y}!fb7)QmoTtcL~P3Wo4&QuG@%B5zq2wsU85RFhJv6vr@mheMC!v4BI4 z<1t#{xu8E6bp-o>c_Z|>6LfkCA9G&?rO=*pc`)TzjO|p^B|+&G$1^PW3Jo4~AOz}# z6^<+7bV6eq3|IKucm@4Ln9buDQ67Kf32@5Ij9i=RPl+HGF}FE(SJ2^bZu6PuGiQa5 z1kY?CTI`L4EKCK=la7$R{7eE)R&eABa<76oCXR>+Z@dze!m@z5p8ng)1C; z96RBwals)pJ}nU^NbJ#R4JPpM>{MGE03R)}8=9wlgf>M}ylgM2!QPwea0+Kal4!yX`Q_+y>Xr$5#M$b2k6!N?e5oBtKGAD z4HNj`j-cuV$HaA!9J>=mFZMy`v2j(xNU(ooGokLT@I zbx6>4k;d)m4Fi^Koe?hhS+ML6=D@eSLTS6Yq}rQ0sCRoTOENZ|WVOiOE9K&J;fD@-t>S+6>2CUXpJ1nD+%y*RK4WvKlm>NWt*Tl86 z#FkNWR!o4S6kit?Mm!$C{y?01{i zps#})zn{c$Nb9l;RE3qzC~%}vZWCr>cSDKQJDA;g+=R;myJ@U5!?2~8^Ua3Yuohzf z%$}7N>q;jm!ZLiW;}E@)@tobF=|WnUrzrREP2IdY7FHIL1%?{|WVfa64VsN7Pyu%0 zAn9B1F5ei3|9EF@?PoqBtkmjfs&DD(q7Hwt&R@=_*QWn9J=~J`g*hX&ZDdbQEx{QF z=&HQ}^fi;AH^^Z5;No@ef_jzh7~`?lvs!xhVMEU*N9iZchXZ5vEn>LQY{ESbYVKzK zA`qf@vU~1Em~Y|rc0+^x|4CkHGz)aKXadBN=Tvj(1TebByY*7pL-TzrI znS@921Wu(S-JAq8_7Mx?4NnABLXwg{rhIv9}aOkw$j8Ce80v zt!kyP{F#w>QW(Rk*d?h92i-;(;c5Q(^Z8pm{y?51?2w4P^31cpr57ViJ$8t`8;nMI zXPiX79l+VrNiV_45XC?D#G{mpMfe(RoV;{(l3{w0_+b*${JH1-(enAqqA`3U{^j7& z7A(wdJMcU>itlbk`J)-Nz@@ue%jc)NTMmj56Wys_-hw~kvCjbOW{**De&o`n_U_g# zK!rbje@kLnMDguq$DI?ccjEEoKzSRtTeCy6-2y{6-OWSYr(#C}{ z7seQQR`uYZB#lT!V;4^`9QN-C{$#1~HrAQ1@^Tn_uOl+W4!3Tx*E^X{0bj_CWtgzq zic(>Zddp}Tad_Ja8R5%WjzgiCYvqazwZ0J~alYv3XK#8i4YAG6(B=_r31XWOA~ALh zkn%UoD-FjdR*}Yfo|8`cp=HHPk)AxITCfE#RHd?1%AnFN!^%#vk9-@m%9H*F+cv2= HxfK8akYxq7 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_0x332b1c6e5d406505a41b9862da82d3af.json b/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_0x332b1c6e5d406505a41b9862da82d3af.json new file mode 100644 index 00000000..2c2a4c80 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_0x332b1c6e5d406505a41b9862da82d3af.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "004" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..61a0f010de334f1a21e77565bc1554df7436ea30 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tAnDqRL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=9vVF=_y_<1swE&~ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cd4c22d078403393ffe0541ca199ddb35a9d4b2b GIT binary patch literal 1534 zcmV5qS|U$BqrN8!usaLctB*XFYUuS|2?n$ znxEuVy^I)6NUpE>f?!3ER5ZzAn(K8GQ6jMLqvKqE`Z#11rGooNMS^Gj2o)%~zKCd$ z>szO%ySUNl>zypze;RW^BOth@l}7(k%Hjzav3m*1`;6A zWWVLQQl2f7F6o*rO4YGD62`R&d37&iz7244%3Lm08vU$qj7OiEu4gInr)F2eatzK9 zk^l5+^}>aKgwE-+#qRH_%)CR;X1`rY(dwAQwo?IO_g|mX zO(gZ=8-eHt_kVcu+|0h;Xd*bZn3ArN!-`u7dm2vpQLDixNgq{Ss7h@Py!<*isBk8U zssLyoQ)b>Vm$K69xzA^&v=-#sT7++F!nbu^zU>A1win^sp73p-mv3i5zMVz*b|!o~ z|IK$i$BYz&cY))cIj^de1?1?Fz^qTIjqMIV`8>`NCMSK}POUcU!G#~0gGLV=9aLVQ zeDV5ZLVPSv@X)hXTb9&TZ`*ly$hg|-)f|{>ARVAKMsxtO_YP$9Y{=HxkgY`^TW3SI z&xUL-0@*$rvU4_M=YK#NeJrL15rs_4~AS^4Id1-xEkIIc}js$LBHo1 zv*qcR*0{Mle`J}H%K95W=GfYLp|-Z2LRovJP}z1OI4_APTBp@?UINzmV-iTAu2R*? zE@uP|Stx@_k5DBS*O@V$Tz_+pvc7K2>rkvgWsT!{ARCS5SM5$6N>GH9fND>UD?Egt zg6q0%x0Pp}-lToT1wrJJ<%GVkTpD2yVaua+hEq+hQ*D{pXEuM~BR z%=h&rV+S=>^l~49(i^DH)%fc08#D`+wz+Sbg;N{q!FfVG>wZ{AWe(w%h#-me`D^AH z6w|`guohSzGau$Na~pfB*UgyZnSj!BU#~&IEo|`(jm?=-yC|k1^y_nAkb)~k)=DQ( ziVr-f%{m3`d&}{|yK`UtE5GrtM4|ljS&1MOsh`!0AAR_QT kjQVeK0x>W`0x%n2r68_ltK0m$wajz>1$Zeq5$X>B0PlqDr2qf` literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_report/report.rst new file mode 100644 index 00000000..87f3d3d5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_004/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a004 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 004 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 004 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012438 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_004/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_004/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_004/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f5501d7686233919e55546765b1ab23ade9eecee GIT binary patch literal 2845 zcmV+&3*z)2iwFo&%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ+O z+r|}E8rhPaIChe0CvMUVM{a8=6#)>SD2u8R(;`K4%$o_&mLq8}Ah0AM;T9}FQcB!u ze`W^%g8u6>^kMn}eU+XCDeO|R5~oTu_VC-?v*)%4yWawTU;O94KU+xtqR$=EJM|D} zIsx+gnvO8n(=g(2=y|Rm#L?Z_`A7%h&=&-9RGItcTnzGJGM@9JtW^xbeURHvTsDh_+cNDoxgPz52+ z>ps!~q++lcS|&JSgua$IQ~m1u(@*aIXX_8q5^@ZM_!RwK6htYT6SKLzB5W0F|)xA>>i6$a1aKR2!vcsaom8(N~tMYZf0m z=A`(T4{VR;YP*#zY4bTTznNQ4U^4!uVbH(Zs<%2yrPBZ$_#x6=%k|^vy{9!<*=;qI zP7A!aZ4MmQM@HyDzVGgrt7@at?5gcfWv{j$M>k>AMp=lS%#v$gSK??fCkO)RX~{~n z)PSDfdOB#H1lHi_8n z{YI-?+pASNGC26yw0F#2NCGQY zI+v2N_$C#%>av>Dr5x}7_vXTak9UNkVeSaIZ7E;0oCFk#_HaiKik`WX7q%s-h~1=r zqiCFio-rNT7IHN%5G$h{2e_K7%zT z6gWw!|1J$n_e|Pgvd1Ju*Qje_le&h-6dMdi*q~-dW`9`@#Hv=mPm`3Wn-=m$(2o-q;{w7GF6EfCpiZx8*_iYA_sG7c|Q~8m}^s|`i99Std zD4gij(qwF;_>}QXXQD-RpUJ|A!8GZbrq8xXz+npe7SnI%HHuAx#U^c>FhZWhV5-O+ z3{vb<@v$~yL}=>-8F0f#lhDLV#PrJ}w7 z){}6X#Z5r~esK3?=@p#8Wwl(B+w~HVgj+KzkOlg7hcbY+40Q4H!vi?~$$@7d9)0=O zKK?T4AcrY*WPqV0KC6UK)|%j!yxXZ%z}i>5>ks&Z>+lNlZPNi}hJigJhnEWCrY?#( zb*ukKQ}epEscN|`Q7t?w7TCFzPYP+NWKipYK_9X-Zns{NVc8Z5;ewwj%l=>je9O*?8-*FwUao_9t4*?W|GV!} zf@vX)$%TZ&!_1$OYmQu3cI$-Qe)?v18|W6Hw~K^m&5^9%U0jq(=LK8@Ag9F~mwN>3 zyu?HSO}Ks3UjXla2O|1_mO!mp19HARt$;j`!1tdkYOSFHo$l5N=b!TEkC>W-J3_0` zhFN!4*fpwohe6=sBF_U=A!XBd4X&T)1Z(7i$dP&nwM);+aCsm%jYXmu z9x38{xulfTX}5FXndPSIiietyc-XE3Pdnk!gj}WZw71BQw8X=!hG}(7wM=`a7;XfR z-D+jGTP{6^3eZDC+n|_{Plc#WBT7PLN&2F z%!OWE*Yx4s5?pWqr|lHrHyG2d=!4~hi`S(K>Rs~0$j@qRwOVgIDb?fQY4l0?Nmowy zB7#fhGTh^!<~~o}2zXjB+_`ikOdjFIMyUqR|0hYMVb66f-quWuxz61Ii_`1+^s>4< zeN?Mo!y~G~bN3Sq#+%-0FoaVnjFyKk4jheyam6cw;mzT4wCq8#gEH85#JcH(lWc+8 z;K;iaLE!qjw8>2#71TmLJNp@%!7w|3RnbLGf`e|!^U)}I1N7i6-T*xlffYL9o>bqr5W9Vlfe&u>=n;OKDPm9*wXpyu4dSaZkmo41~_@$ z^L~H!4ok&>AMc+nFDw|SpP7HVr1nhK8&!qO&I&mdjgS*yF2JJ|jx41X&~Rp8Z4Dsu zc2*99m9-1TXXxNy#dR0^$Gad44xfrh;9dQaXMZBiJ;&uELQ-8&`^;f#4ztVO5 zl~RADxAixFO@H&(@i(9PoBwft&*zYlsl#RPanFYhXVr8JG}-YrXMk3P^*opYP8Qk@ zPWuY^wKY})IUWv#BT#g(^6l#{zI~lKeqNlQ;V6-Mm^k(DXgzazh^Tsaw3dOn#AF6s zJGYntlSh|K=B_p=UTspmj!E%qlhV~DrR$iKt~Qy!+GPI!FiGm;deuNQ{6f`0RK2a! zzfd*&Y?IfohM#Tn`ql80Cg&)4QW!FKl$pTNAX#~0>2zl~VYvvBQIlsl{ zGa}BDHy+6~-@w4;Hl;idWN*n0gM{@&pI!CY&_g=8M3zs16Pmi>Yi5898G7lLyd`<| vy{#F2q^bcC!RMb6RbZbt3Y^4=F_5g=Ks(`((HtES(#8D`ga8A}xf}oh2$Pg7 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_005/afni_proc/_0x66adc730aec8306bd719310c7f023b50.json b/Afni_proc_through_nipype/_subject_id_005/afni_proc/_0x66adc730aec8306bd719310c7f023b50.json new file mode 100644 index 00000000..badef56e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_005/afni_proc/_0x66adc730aec8306bd719310c7f023b50.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "005" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_005/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_005/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7ad6f5ecb7eff9bab52e5aa666e860731a634656 GIT binary patch literal 305 zcmV-10nYv(iwFpS%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{s+aIS5LxTL_)TiYL@&XN%tZPK0uD~b$lWpV%s%K_t-fN-^@3^Z@!Oz{tgeewT^i> zZ#&g^t`%|K#_-FaMYdCUqot&ZmB@nYgm;8-TO!vjmeBYTG3x0c6%RAi7nep`Ka7pl z4LG+|)Akd}`tIUuomH*2lKMOiirrQ+RRj2KBKiH_Z7f$l&z`k{teC}clI$_O;7=_9 zF9q~ezrc!GCqynq#m7|!=}uHxSFTD#wh}4!pZYcM7{*WRslyt|PonelPuZ9}Lrf~g0)Go>e)P%|Q63Id@$J$>?>ciW}q!d#lX#ia$E z(F889#v_SUB;x`ht!GpieD8!=gaCa}b2pWpI~hYFJw4MIHCY|901vR2PP* z0wkH21xvBba1+VFGKG2EvOEW4XrL!N`gU^=xyy0ZkhlTgv+9|W*P6E zPze>JIxu07Ocv1Y3*(KIgaTbyK6rvw9?kd#_#@MB@WhoiB8z$c(7L4bnB3+rB$ z%TP{&$wMPriivpb-CbinFIhGw+J_Si-vO=}n1=V^~q0f_B%DF4jRMZ zd{wil6CD3=MbEG5-31oL9_)XmBGE_Ew7a`>(M9x4m?#oagnF|%kJh`-uIv!Gio!xgH#Jez z8}$cx@Et;|MzWhZ!3jYE4?F$NkuPJn$H!7>AaI^QQSs=VyIJd8)uN1lx$pm1C_#};L#3+QnocFlEPLyX+pc>Fp?YkBuH46q zL}naYTL4kUIkz_G*E_d?9WN*2*nj=y-+zSXPq#^AC zj{DItPDj0yelJQ!S#;EoAE9XOR_n1#HubAnGIs6sXb>k+e>94F!(lp#k{*m;G{{ay z@!%K+v44v{CRmRDDFggxjN|_qo4oaaDU|>zo;&YunC5jZQ#kkEd{M@oe*j8ATrYD8 F0031@W<>x1 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_005/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_005/afni_proc/_report/report.rst new file mode 100644 index 00000000..5f94458c --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_005/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a030 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 005 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 005 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.074299 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_005/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_005/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_005/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..09cfeb60cb735943a3082012b2df4ae4abb0da83 GIT binary patch literal 2536 zcmVb!>EBVP%~r;^81;mycf zenVdJp1+d6k{*!DnLXs_#ap$-Z+d!qx_f#s-^^cE|M9OcSF*q4wr2;20Tyg8!r>5^ zm1*6s92x0vMbon|rZmM%2hpX|fT2QACJby+!N6t@!%acBg3`~N!k+8u_E|k z#UaZ4Xg>P)+7l!9+s$MHdzMb!Nq$q5iluy^m@kxd>0zx@sY#OXpdghVZlzRhVuvu2 zy1Ax3l~pxOE{Ox%6CssjNTDWcn$l?-t$MrOlzVCN$nj0&h_PqSYLCUp4MaiNmGiVM z7K-I+;eH0Q{`0!Q{%%L@^mMt`0vv@gHhsqr)8xuiMbmdXZN1k4FD~07&kwN`2axLP z2aTrDlG}Zw+mrW{gEU!(UKi&fdOAu|Udd^)T971(N;;a}uD3w)We^SWQmI&ij)Gu^ zHbKG=rn=GW%bLEYXitq!U+?zyG+BFtUrTP9T+={U@9R$ut+V?qO}-IfWyP4_P^?s? zhn1@M9v_CbHxda=(8ivoz5qLrXiy5pd3J`x$&v`aQ=6(?K4^6s%AO+kG;r{-?e5rv zmcTYH~3!tWf#V7Owpl(JSf+-=envqffUZevImv2_#w)dgc5DQVC|)*%dLhX zAIQ5#R{@{a3dOBrg$7IW*Xb$x%QU%vCVzq(N3gB(2aCB-9E}B4sdx5@X>yaTObmue=WQ$*9OS*-a0$`p_&(=6BUEE`^|eJ4aH%y5C?(a{p4 z(B$wtrh}M{Ge!&_l{q}-u*;MphYgNq96s_Ht}^+N9WcB^7K5C_PRL;%GSl3QN019P zJJ%Q-6*VZ?<3hY0iEXJMIv%^F#bHb=Htob7E=m((2}T^otl{!K?uo7uH-6v-OB@VbhDRI@7>-70iD#Vt zjMw4p17?lDV@{CC34FwS<&*+*#^nBlVLrAKQ5QL-_Y6-l=PNW=&^{Na8Kd%qa_ZR`V>t#6(;wCm@FG4 zm@V;)1jFOTU*OBT{ZOiX_w6wNM)`h;eaB)rv`5QEfWm0m2=TimCevVvBbQ+-ct6Tp zHi=G3_z7Zjcv6E3JUl(o<_Ew>i|>Z!2_K_2@Ac%i&QXJAJ3C6(dj_2T zz*TOXVy!?(uIwv4y4E3IdHemJhUEK9Ko3(8KBR9yyKfMf$i_lLFNrc@zbVbNO zs+8S+eLlO5Oo!6jRZ6r@kgQ*yUKF{v4;KN*X{{g>9>6+pa8W=LZXfDC@cs)B(Pyj# zl(quod~;p_Wgvl9pX-LwGJsC^Rm%D2Joj>H}T^)@Rg~Qfp7fhad#}?l`aKog_`^7g z0#Xx2penR%hQ1{XGn+6Qy&DR&-ofm~vj$uq=uKml8ip-Jop03jx-l1fr}nHcUsp0l zAr|3t9R=vUh-dT`P3F>?I6;|*AM0k-F}E_8%rV>uAiGU@x8JBghYB!b3ke^@oxhw<=cfOh9%hOE!km(tCNjq-mf(~FWZ7NIKQsXFRPpLt=fDAThxGk_kR{lw1dNF45w0@ zY>s^rd5DJbktc%j`gk+h44~M-7<_h$s_n(Id_~w2=v#^;2}83~6=n}AMx~rz{7mg= zoFBoem_?xk2i-;x;z{=S^X(@*{y?5XY}p}w<(Z{_Pu4?BTzZIJ^oPT&Gm1mc^xr-CZm{4TG2qV|1?C%$a zp&gRQ!4nLJ{T0riG|@iAI`vgt41@1=Xiu=ktQ++8PGnQS7jk0}Cakt3ZP7=)MYNPS zeCmXh@MSE=B2diLQdxvr-|*uoTlD0ck3EXv64 y1rn)QPTI-mh7nOka{QEPz!qGq2qmGILZw}Xm7QP@c_yZnC;Sgr{!Qh%6#xLGZSxEO literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_0x53e9f2ab37b004ea8655a036430b95db.json b/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_0x53e9f2ab37b004ea8655a036430b95db.json new file mode 100644 index 00000000..d4685f49 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_0x53e9f2ab37b004ea8655a036430b95db.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "005" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5c388f3173d8e21c11bf8354d9df0e95b9f53237 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z-Y!&07;!90RR91 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9999581ab30588950b28bf3fee934424286ddefe GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=Ao49@@j`KiL6kQ0D zg=bnvqj}g#S{OwD!$Hv2T_lU5&VZmKYDAAjDkL?w6BuYWK?87Cb!x$?(9*Du*ef5B*WoDnyp8A&K3E@6H1Vmu_W&{y{0UHo1& zel1Rlx}HZ2r=-xUfgo5BBo$5bgcf=k#gqsvg7~=5pFNHkMVa6MQnBE9KSm`=p)VsE z7W&rd=`QvE7;- zgy#-XA{>yj*5DE;jv|@>ulWck65iKLFHj(X;sQchZN@w$&4YwQTqqw% z8UsmRf$d^ztMjnyc|d*H^a`#ZC?MZ0a=k>3NC1R5vz)J05et%mA0VMbZr}oeWgO;d zR>pnrG+dKmkx9fe!q8}eU{O|Ln1oWIVh+h%f+P~DaGDkR_5t@HB1UCQLSzPb4rp_m zFlj(YhA7K&B`5K&B|N|hvJQio1cNcPn<-XV!c{_j3l3X<|6K}I#>^ieVe^m%2GGe!a;B^JjBxRq=w$U6!;V=O`hfeuiJ6_)TZ9={E( zenO0>2o4btOt3#5U9-6~%ZVU)FbE^rAbACHlZt1EGsujP3R$}evooWDh@4GEZ|2gh zT7ne?_8C_3R8V(EQ*$<8{E(p`5z;LAB)^A(!m`6&7!rnAFeSAc85XdaK%Jl_le9@9 zZe=`4kW9>qg}K01MtZIdf;k#SK16C}_fQzuCgjE4oCP+(@hS6ZrPBCkePcBG)O0<|NH8(G8dYO( zj)>x?SBsY}g(PxLpDlKO*JbV>fF?H_qbZZ?#@EXZJohSVr?ul$6C5+aDTirlcB_+N z7GmkZUluxcAQC)vxO9ykMpg%$GGoKD18WmT2$a-vwqcfQ1slj=9Y*UT5*tnph~0mE z(ln7Y%WnjtAKd@p$#XONzSlxZ8$sPm*odUZ`5*40!dmzhC1_ z5>*4xKBmmP6E0<~*K?mwO=-`_w>=Br_Ly(`qI^3u^6kvRw=?G3xhUW6jC{MZ@a>NI zcK@62XpR{v3GV>MU2|U5DGSNbw!o}U>fS~dpaP!cDU;*At!|?+?ZJf~nSHMZj`nM> zPriJ8GA2F}CwS;tt946iy|>}KJ7ip~_Zkk&HINQa8zDLX*?R}Fbv|VKe8~1JknQs! zJLf}oW`XRS57|8*vimj)l=MeZ!v{mou7(eWoLvp?g*>G|sG#3- zjM?(^D{I`^IeTQ8lgj!VJ?7Y2f1%bloKji4rcl{%VmL2}C|jr1bWsA<_+t{tpsrH& z+74#~4p}IJDvwYldma?riz7OP{^kN@ebbmXp;&{;8Yj(AdS2^6r`v=Q6d@&`+LNOS z4s*-!$uNR(GH#n>p z$~s0Cd-{s8gBmM-xd%b%71ZZybanU*nk7ry+%wJ6sSS1iBB7plKWw5Zhj2?oki_QM zYvvLZ)56rS7FZs$0Om7u8+)sl&6wo5fYNhMFG0aAZ1D|^wW(6OET$p!>u10q1y{?g zRZgJFT`6xm2#dZn?K`kn&>@A3modxzlqzMa>$iFV?qezH`^A%Q|NhfFf9XZUY>Mx4IqAf3z9Goo3bA!yT?lvsuD8rf-Tk oj0yaY;{Kb0Kn#qK5X?qbDTr&{>bCf9JNMmx0aI4%s_G8_0HEp9WdHyG literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_report/report.rst new file mode 100644 index 00000000..5391108f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_005/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a030 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 005 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 005 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012852 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_005/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_005/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_005/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..94147f7d69b428bb6316a646f13f231b12e014d7 GIT binary patch literal 2845 zcmV+&3*z)2iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?%_bDgq!tQ8Ha6rbUXzm?CKcwB<+|3=)Mn=lX!VIa*dEE`9~5j1(6$C4oZd#@r}nYFr?PrHpXTWAMiuZ zLHx0e`ruuUclE%>n&%@|^DQ6QmWwc7>ARNZ2cDsY!@!FMLv88_ui>b7jEqpTOid6r zcq2f1h%^i~BijOJ%qY-PXX;=7z4OKP56AzBmym0!#HaZ8q9987f|xH9RpCKd+9(%_ zoFr})q|JngjjRA>5?^m9Pil=u65rx`mdisvhmc35rYLf&sqIyom3pm{#9!N?Ky3=Z^ zofdd;+ZwoDfXv8;eBa%#*0sG_v#Yf`wOx5XiEqNFgYpnPnWf0z)RK6yAP55KX(?*6 zvIjlC^}}9XkVFXv3Y-;KSm*j+>R!EDQ`B8qd7`ztYP+i@@r^@tAUH{UM}f{tSAC)> zt(~Vy{3#F1%SRXmd}&j7P}<~A&}m?~10ItEE$u3e7oZ0c4MG7w%}yWNX%gXgY!R{B z`+Kdbyero_3OM-4a<;8rL;|bUl&5N|tdPcvzmz}Di9&d`^7}Je zdK3=1hFodwib?!FU6~GmR;NanX1QM7(;Ag#9cl$0ovy-l)!qCSEc}xe3H(w{mb*%= zb15l{uTycWp=fDcD#`wTZ!RnZcv~o&*0xZ1C>6`Ln}Sl=8Ey+g*|)Zf!b3?aV=wLB zD4XY?XHJJ63Wc)4U@u5Oi`4C{fx;A1MIQyF`xQ+!rr@Q}d{6$))SIh-)~%%gad_Mcfk z#ThawWE{2w2D6Z=W-OjTE~s^;(K{0vOl9V=$V{ewp1Q$3Ij}Qm zQaCZFrODXL@G0Y&!9J(chi!ItXVT62%!Bmkq z7-Tr0;$wZph|qq|k8sw&{v^W_?Dx+be}SF%;RB)k<>%)BXyr+UJ=>%>um)Mf*Ml%? z1n4-!c_~3zB=N_W*^%WMc4Pv* zdUvn&jaJ`lYwd~({O}Ud|CZR@;mM+3{n{J`<^@SofWh9ZpPQyd~E4@04D+X(2` zhtnXHn%ZsCy#1yO33{KUaXXEQ0?W2Y2p9ZJS@wGq;9E{!+$hbc_HqNnTWyl1kH7yu zBbYYAm|RFWJk0$uz2+zlb*Dkt?I*8ix1nJZdb>!7)*Q+D-Ni+zb)LgT0CHL`aD^>c z=OrczXu|EI@f>*nTM*HEv;^d)4CH)yS^-5Mf$u(3HF-}1I^As$&OhbRA22lucZAkn z8)n^IWs7kQO648|wAXE@z{DH1XI-LtQSEd=&&M#LHCmOb)|7Wu8Cb1aYm$sYGT#zr zH;_)Zsmc&lS`+s!5?eyeNx|N~VD{iJdUQC4UNVueTN!eq<9NrB=RBeKSv|b@;0d{(3&WHvO*|p_r9OehGDu&2OaL_IJ0UD)mfIfeNH$af*0GU=mUiD0p zzr{BLgdK8-zU}q<>0lTIuHnJi(u{Ax$qZS zyxX6>!_sgVB>QK}3kxRd=jPuoX?@E^tFsqS>p4>obq!oxE8ot+-{&*wT%nqqO~{c6 zx#_UwkS!wTlRG}n!9U;3r33xIb8;T$NHv^G9eb8bWIX>kl`;Dolu04C4YPn#>857j z(JG9to;$IgTLH)N-@W2VB>WU>p^i`Tdv%q}&I<(%jgT8+F2ti1jx41f(r{*AZ4Dsu zw^t6sm9-1TXXxNy#d9$VSHS2%w_NgTdl;`A9dRl%MZBiJ;&uELGk?W5^;f#4ztVO5 zl`?;&H}$u8O@E8m@wb@yTl{f<&*zYlsl!$9aW{YsXVr2|G}#VxcYs!f^&*%8P8K;X z&iYElwKY})IUWv#BT#g(^4+U1zk8KAeqNlQ;V6~5pE`B_Xgzm%h^V@Mw3dUp#AFU! zJGYnvlSh|K7OplaUTspmj!E%qlhV~DrR$iKt~Ob`+GO$nFiGm;deuNQ{6f`0RK2Ow zzfd*&Y?IfohM#Tn`ql80Cg&2pi<9*32DpbAE%* zXGEMQZ#>d#zKMa&ZAwKR$lj6{g(>TaKfUU+p^pr5iL9OiC$tPT(5(=e3iQ%1c}vRd vds{R9K+{4Zg3muCYQR2klsJhK6Chc)fp)?nqq_zoq>K9>_hAq*xf}oh!9NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDF1n2Gctk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=Yod~J_y_<1SdAPp literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_006/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_006/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d2e2869b2a186e59388ad3df870fbba8c7e2019b GIT binary patch literal 1535 zcmV=b(kvshL!k_8K2f8>qd z^25AtE)q@?$jwz>0@Xm2W=R&a+$@oZfuz!p4s!GPdoISga5M`9R3j3l3KZ~c^; zM zioHVHh4x1GL9b=0FWFuxGzNv_dwFISVIO=XBzVF3N)@q$6#XCxEi((}ORAzEOVTp# zyT{?0oXS)Ykpd^<1;RyHj&Kr5Kt}?Txrj*wrD>Ap=GLz8Fe1)W1Oc%FB15#fb(}N= zND1RbGmjL!7=k18 z6w1aXOv1|yxQ~jTYoqE_mLztCXqp!5KK6LA)W{)vNwjnQUW!x_UoSZV3DwRgRnCs)wr?%@^3jWmWa#)SwIU@6) zUoD(F7eMG7KU<3ZU00d6i<(?>tfp+P8{aHB_}s0mo%W_vO>pc4ryOR9-K|bac|ete ze`(+p1ECa&Bb00PFt*wij9VL#?iMydNKi>_=Mm0w3&HwoRL9Z!n8cb>Lt^({A2w|y z&GMU|=!f@yeDd7RzSn9KJhix1u2!R(TMBy`PW91f;3uSyYA-XK~N2YXUWl}l|433kfO>1KhfuzVvxKWj-$t*|IO@U0ADNw2A06$~ULSt- z`fx&gEKc;$FRWGzQmg$n=lvn;YPH{RaIS@PklGm0LCF4lknPhUJEuc-W`XRS4%s~& zvO5c8_jJhK>5#qu0crIyn;NW#PoxIx>a3(cks3Z4a&|R*H011R_#osl1!4vLfn%&F zProjV+nXnkEPGNF{>G0zwpL&0)itM7)|M?))|?2>OOR#jxSGyNpfLWF1X8T4biKAI zIN%|RWl-f2tK?Q|0}Gomo!oqThO)kC&6`-PVP#F@W}sTF_Wf?Ji6tl@T4J@Q#uXkR zSix<$UAL2Go>^f7E+i1x_aQ9`ski2GS?CwHHI?`CdK5+xm@8GuJ?S^|&#D_7HS=X1 zqw;NY!P;Ss6}{ZXpv*EE2tB?!{Ep3%WzpQW&C+QR>dsk0J?(zjBvlUamPjy(&6C&6 zMJ%SJtzipbb-;a`&+TpOty!{TN@NmC&uz1a1-C4UZ)~g_DYeUD8biN!0t{1dxy)MS z1gqTT@}@(m94OnqjeCXcF}!$Lv&>7F*0#ESYv%DjmXLv$Kl$$6U-tRiED&A+TeL1tcU*kgN*>zTjBi&!NU!&)w%C`t)9JL7xs9EtI}+jFpAilJPIPf l|6w$ElLN-U0Rl7|U!^dvi-m6U@84yf`!6i8|0C)T006ns?sWhF literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_006/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_006/create_stimuli/_report/report.rst new file mode 100644 index 00000000..97dda78f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_006/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a100 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 006 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 006 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.053228 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_006/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_006/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_006/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a474be545143cc193c49604c269667a8ca055410 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=(kup^!rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`_PBZ;4SD(9{LYD)0h6B{*~SZN$gUx9H&Y&_VDcP-FweoTrAE4e_8&=zdv1y|H98~ z!##5mXV^aS`l^O7*Hba#aNxR*=SSgPaX!*PI57R_`)K2@(aUH(TvbNM!-iu=wTDYH zcefHhQMh*5b>JJO;h%A1Pjy|G9EGdr3JTN~?9 zc*qYO3-Ko=>I1tTZ>ye*6~{%k;uO#pSlM*-SAaW+TIcnS|>N>2bAQkHTAg&#-yO=MeHJRV7JmHI+uWS*}$(QTUbV zXsXEvwlOI^Bz84_PF&!@o-+3%b z@?NVccUr*WwlT0B59xsm`M!HlsVR+Wv#Yc_)qU|G3U9)wh0?HkGD{M_u14WRmc~B_wr|8Tx>;aESf>!pW`g8CDi3TH&pJu0z%{Ynh zJ2r^f?Sn?EBJPXTjsyfB8rH7S3&_GMRq2V`YAdrm1CMxNu)u0Xlv|MSJF#El%~owE z3g2!&uSDT{izNj_>aE&z(W|ucLz1`oC7gw#A?~rG@{2aiT^XxqrfNgY-gqk4#Yd3B z>9UMoA>mgKM15#<+AxOpjmoE7+R zZ>0}rvDCmHa&@uX+83hmeR^d&09u_Yy)>(}N<*oan>DBvxOKV`*Om9v+i>9@x5&aT zY^J&nO9)JCN?=1`^hJkQ`EgDq<0n{={2Veq*_ zagp|)8!p8O(kWyJn;wH%NL@1#&mk8yI@9Q#3k;?^!()nd1|zJ~up^^CD@|C7J76%P4T~MI z7KR4Q{GR0|*zH*q4;buH><`ogPZ;|NYs2^lOdGCEN#M}}KBrt6BUhWyerH56yS9Z@ z3yjez#bd;9g$7-;!z|Qt^AzXVa7<(5^b-7ypFlfcqFEHHn6BTm7&xMC`ld$hM+Vc+ zV(N2XCQzqvqR~i`v7X>FhMC5!7Fm5J3nK>8q^qhn+a>`A3GACpzm-=hHgpynv~kK9 zxj6CfK(q*4@)VS~sx2*uw@0wEm(6>9Emwq0LT!O^Y3d<^o4(V|9dP z?U^*#>vlTTrp!o#S~Gr>-s~vw^arhS?}Bs%LGsQsu_JfOb*0*T7KNW&Fz^s)SUs4k zW3ZL0$}>Xr9t{Dsr8}kFpO~Ze3A{YuVj?b`4+Olq&z!MxQb zS^D_9?-GG&B8vSp_uV^ih8Xy8kU$(R;K6#HI-1e05p@c@Tl`K9v=*p@5w3)`{ky>gW%c znuIe#tI>v8ch}is+<;QK2McO+>oO?udi80SxL%e!UGVcUj41V1xuP`1eOUxmD_5H& zqmazEGP4s%r`wc8SXEpT_bv)sBF#y`-oFs`@F;kAG)%4UBi-@TRIa#@I(mNmyHs37 zv8(qlRZ)C0c+{2~Ts;}1jMcX5g5L8_3l={q{tk9|TkazNxry@T78Clxq6 zkdwwTaSXQ2<|J)k8dN*S@Qs@@PVi(s6Ph! z#R&Dp?l2d6HBHrq3zy&m0i3iGfL{?zy`m2;9~`_c9Z>I*J4SjUwv}4F^{8BrhG*eN zl}BAE*^3A+S1NFhgPQv+ek0(j{&4rwi7>u}mm6gf?*EVCO2e+>n7pMLCUcy-0}-dk z_32@Cb$YATzJ^;=f&1=9E*NjPXZ{eLNzZpHP`D1HO<`5U|ef;@Xj zH$3vHXA=EAyy+oqk%#EpPQM=y`hjO_4m?|$;VpPFc>e2N@d(B3;sf9?f8Es#df`pO zb^{;BuY2C@&)#7v*!QA?^VOv#9raU-ZY*=KANV(*Uk5ll^)l>06-*c>#gE>+SbE^}_u!)W1p2RkKUx6~orgmW# zXew1#G(1{|(e*ir&D0tYOMm;4CoAEnSn*YSnr_r&GCQ5gDrkgkA9Fq)t#Ra1syW~K<&7;@g)A@p*BAhvV4leoX5A@n-7s5OHX7;WBP6Mh>s15s@H15d zarLI8f2L~q$sw;_4L>>L^{e4WLoQUH@BG*{M!qcJKgPz{%Ec{<>{PM8`5)P~?jQO0 zH&fHf+E-1CHd8~`FOfHGEmqT;5{Qj|P6DoH*#7!j#jz1=vY=CD9zpKJF9}xXbjZp1 z4L+X{bDq5Mh>!U?1~pgA<#`Z$D^B3Yswe#Ps?UZl(#RpQat4~v&}2_Fe56azOTXl; yNVD&4&F}+7@renZe@aw9ecmW=IZlW`WZeeY2@e_7)({b0-2VW0Wa%@x8~^}QACo8m literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_008/afni_proc/_0x082381b5999def21113ab7bd5970f444.json b/Afni_proc_through_nipype/_subject_id_008/afni_proc/_0x082381b5999def21113ab7bd5970f444.json new file mode 100644 index 00000000..43d9dfbe --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_008/afni_proc/_0x082381b5999def21113ab7bd5970f444.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "008" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_008/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_008/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ad788f88bcfa41dd012f11d97afea6f93ea6b6e0 GIT binary patch literal 305 zcmV-10nYv(iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{y|0Y=GBw17m<){rkW-HNYcH?f)9{md>x<2huC(_(mi%g!#DHI@0;)ApTEO{ZLMP- z&f88ko@+&%w=w)OXp!wy-e@VQVkNTRI^i8*+?L37izPI^M2vbmNX5ep^~I&p)(>N2 zbpy_A)wKPDvc9|cT4zn@E2DcN@!<&$DN(AS-4uoFsb;FZfeS zz)Jx=)i1E3);OXKC}Ow)!4RM+=0obJAj;c+rhTmHcn6_~lYzP!7>!Lh40<$a&V_W=L^ D8CsVb literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_008/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_008/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..09eb08699ffa5f30466796043211eb279569da23 GIT binary patch literal 1296 zcmV+r1@HPFiwFpR%z9-4|6guzWMwXJYixQhbZu||rB>Z*95)cJn>hZ89p{6jlu{1& z#fEfm?|kvuEu{oXN@(gnq~swb2<`6dNj|N#m9%$uN}zoS4d|`vL;J_{z5i85yL%rs z6bxO%?Mfrf{AT7iGyeJd?`-3}`f(pgUS51lL37DTsa5LTCSe>j)hWC1?t{lO0kKT0YQ#umz`JXNXWs41Z$>ok4ZK@V zr~#63?cGY`-HlYqoR4a2YeJ0>OtaXTDm~7Hni2sM5D4w*>67og+o~)V=F;XZE-mPs zrf~T*sw7sCoC}1snp0u$y&ZND0;E=H^kS#WQ~}*H0lCsPL6G5q;ji)Rdhh7)co4@i zdLDMQvee@K%D`7{1I{5uKuXq_w^I!$BpOQ8gCMM~g1J;v!?LO<8^1sKx4EvQx->+U zAjvE(n2Ifimq-DYDU9QW7B}itO;s4qA#gsOHMtQU9IF; zs;MLs&?cmO5#Ooin093O1SFN|64h>(RAUJtJCRKxXp2DHEtL?&h>)?Y(zK?LTj?WV z&L??-o}ZH`<>=x2y*RKaWNu-+(Nek1LP;JH(H71cLP!K;OYjWRCIn2wj}^!i8Nbp) z)|;v*LWXEr)_I?4Tx~e=2FYL7)r4X}t@Zlx$q|-;L6c-&Z{F>-9c8{{qEMpTUPMzJ zR0o&WpHwof9h~=;8!b!OOLu!FeHyl&myj-w-OO7VF%~)aR|a_pbGM%=1TV9P9Sx=u z)`ZwT?3gM!Ls~xU1X_iygU>cQ`0yfBWDti|gv_jW+tXik_VDY|pWf_64X5^7!NKfQ zdnpQrf4HLMSIzAb6Jz)HzETqQ4mL54?RD?Iy+RvU+UzbiEzp7-y?D`&YBskmZ)*vU zch9e)Jz(v&*SZ;UbOPBzI|;qJyD-s3^sSrNB;xoO^E&g^yU(v|5V?wtg^F%w;S|{?uI$r;%)|Iz{)~78xl!>!H8mvcX#~Ps6fNT|52a zDo+2`jO>y&nm8#5hO@ggWjC;)=upSCO>-eryeh*)dgnHS%&1CZ`JK8AY&yDbK)Bdl zYBx4>=p@DYdHL9}Munjh*^DPRTZZ4NFF@ll2El8XpdaN$=<=8^&o5hAhK#Xlxkfxj68{AG;e?-?7v^?)Ij02%6?O*ahlDwi3Y`)@w3lIR~l-fUcR G2><}l(|4T! literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_008/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_008/afni_proc/_report/report.rst new file mode 100644 index 00000000..371a4495 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_008/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a014 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 008 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 008 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073152 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_008/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_008/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_008/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d0d870215c141a73bf5991fb207cbc43363ebc64 GIT binary patch literal 2546 zcmVb!>EBVP>^fMTo{2{4fE^^4DNMU`eixuV4X^Qj<=5>!xGTv{eTil?{O#MfZ{K_S7W>=%OvJ+1)>7KV)~(b#sCuf&)KmK3G|pyR@{E zrMJ(UPGaoh_(+&WRv5zIEM4DEd^@H_e$3LfDDh+Lp=`X8UU&!{V>a7|_SDJJ192R9 zNPO+0A$T_seJcuy8HC6;LmVO(`-q73p^wcl3T!hTM?o?gn{!V@lO%)J$c|0yn3A+5 zS|^I&hm%BB?nm?fKmPgofBtskzv&wC9fP`){!*6YQlTgpie*FEu9Y@xo7+M~E^cj? zGO9Mg5saj6UeF&YnwF)P!~yn2NaYw(s4KdzcG_mE-mW*5UY6c>1KV=N#K*JR12OhO zQBe1k0&R;$xm+#Y%VFOCwr;S$*U>sXL+P~u$5Ddpzzw1-z4A!ajlE9W=ykx0%Xs7m z5pt3cQhn{P(KK61yKi=T%D#G-r5B;sLj{PQj?&fVN|vq`B}t-^j&8K;Es%T`#)E=X zl1tE06mW!zB@AJz>&?ER8~dvM$n5luZr{k#3op?N$;;BKItc51HS0b#e zm=F|+m8!H|sfusVQH1@GNN9rA_I2$k*nvcYQY6l^GbC=FMEIRzs&@IX)oG~vs?yWJ z!3Wse#e;+f)=>1vMyG2o@(h0DfkA*uLp3^(@T<99YR$L&AWJ{&K5b;_$ET|a9ML+> zdC==j_$kfX$r3K6VpCk_dyQvZ7`ryLj$F%!a=q}x(A0;J!g*MDP$`Sw#f6ekq74|V zKhq7R)i9MqWzX!Y;M0YoyeU^`urz<2o@zYH(tGFfCwNH=+p2K5n9EAyv7o8-&c2+b zH`vPb0Cai^TblJ|qh)IKb`xp^c1>Rw`o?}?3l{!ShX#HwC+mG(>77f;>f20Q(sVPg zOFcXM_r;Z!i0n!=2k%P7ol?2x`Z=i7yz#Ci)k3^mmUc>|8VPdwX3aSP183f~BNb~l zhl41`MT)(-+3HTYSR={q0*rP`(oVTlvn@JBJk6VOEdWrafW*0GxrS!>aJlx45L;1> zixiKJm)MGI4!>qP7SnOZ7Q@G74v#tPF{RjLgX0;8j{}CQOn!_*hL^};kaO6LILt$4 znw#+$a=~Wj8iQk*!%XKimbt;qFEm)?f=o`~W9BQT6xuT;4<-!rv7L%q=9JzrJVl(Z&|pCaT%cZ9 zX1L5x$2BIwV2Qtrm(WkR**u0V!s3rS4o;Yvp=&e!3FhQHW;RFe5;_ddY&O$u>MZdQ z=b6n#i@YJ1g$ajQ(k;tgd?o=WOE`2nxmUIr#tx4$YrNrp8Un906toLH#ATA2yJ3b(4xJd27CQpPiY$*HE6c; zqx53Wgwr3m%Jnm>6$r_d1GQ)L>zb*w53=;jGYSy`R_Y{kVhp;5VjckN$+^vHRg!=o zTzgu724`@?Y^Zuys{={6w4ee7pl??h1L*2N7jM0M0p~wG@Vu9=zWv>he47jCVG4o` zU?{oICMA?=8{E?OdWr(G-4}ysB<5U4G*IMWAD9`jBZPdhRFSK;EEmn~;g)5VZL4Zp z#ckQFY*mU?WR*4@c@we#s_by&7lO1R)>&aywA0pIcp@@8d0wbwOJ?{sOFZhrs$l3==s5PBC8$av$| z`3*h^BNZgG~xE49RTnD z03!OBm4Mn-ft;_;E1(P{@S`V&skTg@(|wI{{yC5SgsVxoBXn9_7>YHBkhrLd#|tIKnWu3A53=p+M^$%&t9dz~zD7G*+o$*izK_M%}2JbFqJB z&kFN(C1Wc>B7Cmn(0U`H8NEf5xwIxutlYzQb+hW2TbWDd7;XfR-KMhFZ`7Ya1=xvW z3EzQt`NlZ>>jx_ zEZa*!-ZGi>4jC*TT)fU*P_NM)qd!)=W>f1ttZUi$DE*@Gu&*z_MHJT?4Y zSt%D5KT{l!3nN$+TNX-i(5;0Ln&gi^U%$uW59B#Q4vy$6&n)|MdND%8qlf5+!El&& z#!2Mc0h}%E^b(v5QT!86Je%dMY8k#pYbP&V?PQQ%#D18>B!BMtXt;R3GD!^Ih<`a~ zxB&}u#|}IXj^cY8QT}K~OmOMm#^U+u-iBkv78TvCUEY8{?9tBv?WT`WaDL>{h4${o zZ9s+J|8QHNS+wFii;lY|T8lvfo%qFj&iraVI*hO%-?`lge02NnWe9XJJWE^e^U}tI zA``~Q^32M?fh-JhL}C|B5FGYbIDfKKe;@1AS8*{6zSj|+Act8u>Fb@yrhqTx+9FI? zZAsdqk9vz}DRFq;2`S;rS&l=Xn5(6-2(`WzByqmz=~wT1Fb$DS&(OvZYzb@|k%eRA z=pbcpm{;qLkIf>9wLB;7^b^yJsUkUfN;P2%UZ@BqLC&DkF2l-BkZ<`mqLnB74_+d3 Iqq!9T0CZyq6aWAK literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_008/create_stimuli/_0x2e8468cb3d727bd5c1802195995c0551.json b/Afni_proc_through_nipype/_subject_id_008/create_stimuli/_0x2e8468cb3d727bd5c1802195995c0551.json new file mode 100644 index 00000000..8f95fdf6 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_008/create_stimuli/_0x2e8468cb3d727bd5c1802195995c0551.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "008" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_008/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_008/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a4c827003cd60cf8c258564eecdb64005ff2114f GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z=hxTDuY7mq}TZ|=AB`G^;5ny{MR)BBQ9=3n9U$MWkLrS)j z6kgLgLJ*1M;W^(q{78TN<;oxb+`MET{W+uQQA*sDrX;3}xPA7#qn+zTA4`HlDsnyN=K5;DS(o-~+=ZC;09MhsG327(jrkD8WI$p7`D}0Z z$6T*uipKIx=S|8K5nUXRv)14eDUP}{23+%997}j#H@yIX1d0nt=>cUS=#v3Vr~D5}64X2rQ#8 zOVT3m2dBf;85XHTJS7Z`76=w)C4xyPAu8ff%q1uykqReiuJ0ajA2MQ8MkGXLfM*bG zZUZLu2}u!UX{O{P-_@80I7ZfC5RsrihITu_Dvh~{sgHad^a+Dlm!I@{urg_!!D_(A z_W%e3?)!oyd_a(4&A5D&oCx$;X^}BT0wN_AM+mSLXv&cH6m&*dga{JtqYx`B;bT00 z7h1iT7*Y`&A^;d;e>}QsYiX7fLGfS^M$&%#8t5h!PZ4KO86g$2b`xZ0MgU^4+bfla1p zlS14{c^o4dn-vQ)fh~>nToVX$IOzJ2`5_u&3K@RV@C=L0%1we7UNXI$a7N8SlpALO zAowu}Pr#Ev8&fbrUS)&@!1%cauwG_KVpa&Jsa^Mx$N7RI$3T9&uLc-4)Iy`_ZEwOh zkPs4$_gk(j<=HaslCIgJR2{iPVO*P(7k4uj*aXL?%+->m(a-wUX!M!sdY+PCVs@=t zj=?!1@}FKWUb+;Lu5EsQ z58oWuO(yl?8v*J24}W<2!pwf?H4vOyOi5SCLB%bIJxQnhsMX+;q>n2vRi$<&c=@%z zU*Sv=Re_*AOqqGdT*^wP1mi));T=ym;F);%(1@ zw>`$&{%^daIcB5)yaO0_&3RR&EF_1I1!g@`_14=ED&TRJFgfnqY}aZhJ-F~Av+s4l z(SGI4@t1Fo$G}JA1P>i+wPr!Bb=IBthm5PWPR)V2CZq$bE&eqG+9F(|G|{vrAJW7p0@?UW&|hK-<(6%*Nu4{#2P4T9M?nXd5uS{b{!-rLP~(z zlOu(P5Gc4!x8*kT%-5^5$G9Mf90nw{Lh7BqRtSB2Ta$SwuSVS{BKmqMxySu_;dyz3 z!+N36F*4uNSBxEKtmxGqB&AnSkE_wu;Wua&C~b4kGz+IT)&29NI_-W~M`aD+mWZH; z^|RN^B@olXXjmIq9\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_008/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_008/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..59eb1d6d6ca2b6de2bfd2dd46c37c0fe1b7e4e11 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgqz~Q8Ha6rbUXzn13cfTaKi`K){lOguh?`l2YPM zJH5&b?uy>^8Ttf$mp(>sdlsayOUX){D$&@(Z+Fk0^XPIZ#;&9A&vI7F*cKU zpC5V-;*V|A2X;ris|P;TJRiB5Z~4f!T!i^b-?cP9@C+>+23|B6YEve>hNGinWQ3Y! zYJ#xE8v)Woq+y5|*%pv7qd-r|)W7<^_us$0{I?V@A=gw1r}(#`AQtllF<+2W;X%2$ zQ7%YaK`51^LPE?&Rsb^z*Bi={TBDJ~xA-H=`GP2I7S>akj=ydg{O`0I?XFtuHUWo0gbdI2f+T+DiL9tQ z?UveY1B=_%!1V%TMn2^G?q0R7HEXS&*6G%E<-H`n38N0m!|KT_MgF>$#ES(%5J*p3 zQCpQJ^!(ZnkMcrMEW$v6vjPk2TpvQ+tM_V(x+^PBw02MJ^wcE2ae(#(CyDPU&{^rJ zPc)^y^E8P+<>B)35k>)D+7up?Hu)2D8d&at$0R{ZyGr8)_<=-&QNT~L)5mt2MED(B z#O(H7vt5;U z?!2fb@q67I z|C!}eoFS7!hOiwln1$3e6Y&gkL8CK`qcf4g)Mg%w%w)<79c4K1oeUo{DIPNzF&HyA zV6e_C1)e07zeks4_!ez2*<%u7=#<*nqSWx1Vw1rLn>6gm>d#6O*5VHsjA+AQN1VB# z0W<%|@iXinITQ~V>{A>L^bAiJ`w45q_y71Q$Z zIj}QmQaCYaq{-OK@F~O0U{;HqK9hwJgK5%r-I#5YfTIldZKmImbc!vL#TIRxFh+in z!PJpA7-Tr0=3{-tn9zRDk8sw&{v^W_?Dx+be}%>um)Mf z*Ml%?1n4-!czbOk~3&U3k|_9_jn)_R`ApIk5q5NKF4nyO>4 zRcqRFP(7)(S=ccc=pBC?FR;QqCF?lyVDbDLdU-4WfO;d%=KDwGOYMz_DCVW*F2na`|FO z+%!b7pgrhs>6&Edo0?vDAZn$pQehM6#SK&3fGmKxtIA!XEatRbs*dE=P7;57Sshuf zVMiv&t9P62ueEx!qjf4O=);GMspFklwypEN9StlO^8?4v!+&xj7>Y2CPjQHxJPd`p zZ6lClA5Isk)YM*w=IvKyNYMMNjN55c6u4}QL~y~+RAs+60lnqq#f{QTYA-jyyxk#L z`uMx=GJ$C$jLCt7!^7O~(_@a(PKu-4>MDtH|^ao5$ z!Wp66?7*zMt86i@L8;t>1vPsO6_j|R_N+%-FRI-h`1u${v_`v9)mrkdDub$3Yb}yd zNakC@>;%&7wNx2amDa?)i^7&jb5gMPFNEDch#nmbbE~_^^a4Fs++52Yyg2+_F0G=} z)%%yKC_NcG?$zbiZo8`Wx(%T5hhZ4{xXkk)RY=+NJ(KIFJ|P-8AabPM!R^x1DjXij zNn?>XhFgk|uU6EGHtlvV+_T*Dy5gZ8ARe~s(AQ6RG$BW6Jnb#>BRyq!)iAA&sh4Tb z6vK%CvRkk1^s1F-Pyt3{>fATLF1<1K{`uCz!VhdBq}0k6s&B@0T8F>b;4jDNwdsG& z2=&D7Fc*3aLpO$Vm*4^coV7E6UlUBfq7N<~9K0?aQ16mEMtLfCw0ficxY9_5r}0PC z$2}$6iwLe%t8k8kn)@t$BjD@daQo7UFujErn-v-E|Bup2!@lR)yrWw-bDX;a5vRxX z>0xzwdaKsIhFesF`|d|B7;pKf;SiomQM^3#aOmn}8CSd_7~UK%$ICtxJ2-=FM{HPb zG|88^4UW7^5d^Mp6gRoaR!J*K`Pt9d3WxatTops)itwOY@&hzV-vE9725*2M&jB*6 zfV}FNB;Ut31B4y&5PjS0_tU{J3S7g3XG<%-1y6<`{DD_I!UIX%B-`xy>#kOG6yLO5 zKMHaBy64^g>>ZYd!ywr^TV7Z&Q9n2Tc1i17Hd>v%fLhO)dZ=qaajkqi2Y;W>taF8G zZZ;uDCgi5WmP59PoKMd9I0yfHGnWqZ1JB8Mm?PD2ZguQgF0t|aj=J*3N- zfweV&$lqQ$2v^oF1fQY({T0u}C|rS{1Ko1TukB&Ha(Kw8%oOpOe8ubV6*Io#oANDQ zlW*}le2W?1;+yi7uE|%r4qqwbEB!Fv^EqT>O1KIfcLUgPRxQ^=lkGrv2WVATmmm~q zvdD39)>o3&)>seZ@vtu(f}{PFZ(n`!?W>IVd2xb=!_?}2O6vaMdhYTNadrQ2EeCT+ z$Q)2RkC=myhnGSYt_~?)9a6kbNb%~B#j8UWuM@I(bx7&zkkbDVlGMlbs)2a;nW}-f zdQ;LrQ#JhLkk_wiSA910kwFfT)l<-fmZ1i^6(UoCUiu|( yNtu0bYsDXET1ZUr`KLq;)aQ*7SLDP5MAmJPo$!#+T>}x(#r+TIC3#u78~^}W$)WN9 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_0xcfdc4c461ca3e89691c0a1b184ef4a41.json b/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_0xcfdc4c461ca3e89691c0a1b184ef4a41.json new file mode 100644 index 00000000..2adaf507 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_0xcfdc4c461ca3e89691c0a1b184ef4a41.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "009" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5c16e0b2566e9367d7cfb8f296ce6e6123cf2d0c GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zw01R{@ivR!s literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..63af24685a2dc1651c27a01922cf5874a0548b74 GIT binary patch literal 1537 zcmV+c2LAaUiwFo)%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=An>cAMNkAV90YCMMY1UB3dV3MqI*r=EZnGWUj9qz&rmf zullw4m% zG|2Vs^V412*lFf^xr-%10TsDkaC3dt=PaZ>i@Ox_9?&Wp>&IO5!5&%5fNgaOk0CXq&Ny`47?UY97}j#H@!fC_=*b%WxXEpgw&5>5^|xs zK++gU`VwrHo7?RjuhD2g_@-BI1wjFMFVFM}IUzm};>>csUPdfP3Vwiu5}ASX1(s2e zC20}&{qt~jhD9n7PYFZA1%gFci(nE;h>AEQa|Mz}q{2y>>pMrh3lT9YBN8Apz%xKw z_yQ*N2}u!UX{O{j-i?_1I7Zf?9}&MlqIN66Dvh~{X%}^|-zN;PEob1L(0~YOmVBJwV?klrVJ{2_!_1$M+RYRT*i4{KP?Jg8 zI1#r~9>++=X2pU`U@IfN&;r4n48kr%eu9oMg$O@tHjIkQ%8kJbFPUCVIHP7E%8j!G z6uL19Cg@3!jY*gwFEYY>Q2YYy#C4e^iCH0>rgq(j9v2IZoPqf5z8YZIP)p5LV|N?2 zfdoi2+Hbk8lxNGROS)!@Qg!Mc3**{^yu6<=-v&53Wv-SgjegQMhoetS*VB~vW3y{v zIR@v5$bWpfeCbj^Lg)P1V)u7dX5AyuWEWjYVm$K67xX&i0wC3d7nul*|#J6=(zU?{rw&&s79`S8ol&?1@UvD11 z-iWXF-+YI2%t%3a4><0d^QuZ&Ku#VC%zC8S*zy3%=W&)WIqKW?YPCrZF8s(GHag(w zu=48cvsY&$;zMzQhmN({w4^pWTh7}<#?@x0=D=J7=>WAMq63hfw;-FdAzQN{Tk}A+ zW<$1TL$>FEY|n=DW_+c`DNRyLkWtI5>V~Q zVTFefRB+pF+im4pS8vcB- zefpZY0>!j2HLL}er_6`>%-qJ_=v6Z&c_yIrJkTppa0^>}Lt|s2)Gmr?2>r$s7^L7@ zk+sqZRJm)#O$TAolcs$a_6jc_*=_E4B=oRnDsXELcepamW(lK+zRsf{ nBJe+qdarW=F)%^`FdJT_Ag)EL+x*+Vvab6tDJI<_mmcfm literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_report/report.rst new file mode 100644 index 00000000..9b848d97 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_009/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a081 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 009 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 009 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012112 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_009/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_009/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_009/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3ab23453a9a1ae4eb36564356dd3795c5687d1ea GIT binary patch literal 2851 zcmV+;3*7V{iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0Cuuw>M`>#*6#)>WD2c8T(;`J<%s&&LEl1K|KwwEi!e6ieNhxus zy=!N17xb>r(EGkbU!f1uo1O(J>{7B4r%E*T@Y~(9=X`r`u=p1E^WxwCd4D1Ki#~Ns z@6*8{YdXSQPs51Aq35}N5Jz{V^N|k1p%uj6#cO|wU&X7@vN}ROHeDyKJzAK# zyOsKhqm|39!@#u6;FKHtn&-jfI9lEd9X%jUzKf$JKXd}qM)7bVy73qWhBVsS`q+r0 z1Age*h(ESaAK3MHNAo?bx*l>=&-9RGItcUSzGJGM@9JtW^xbeURHsaM6^FfJqz9^L zsDiM~>ps!~q+*B}S|*S&LSIYB)V}=dzq7x&|KEQ_OUN-4!YTT-D2VxNPR!;Cim+YE zZ9 zU9Rzo|m6bh7exkOzO1rDX(TziNAlPwqM~2RF zS9zk!t=*?_bf1UI%ZC{Gd~s9QE^hKC=+rlz0gp+7miFZO3-AMp1|y%JW~Yy>B#H1l zHi_Bo{YI-I?Mc;+3QcG2C&tnH^vZMqv^rIKX_jl1hFUK-Yfvk2>vUzVtL$aB;KDy?k%eE% z$#Pe&b}l7l@pUe4)nzrQOF7>E&&`DeAMXey!`u;a5A%hRUQ&CAy>lT&I}B8^1{PHzNBj;L@-X8V#x(i zAOHu6Wub&7$#k*wITvVtf^!59&Qh%TI)jg?jYe&(p+@mpfx$xt+tetq=;UC+;4_!v zP1=8EdK9O~ppYSK`3zc(Tx_;kg;E1~ETROELnM^;6 zsn3CxLW9DIP9sgmMv6}vW;(N4WcQgYj2KLlu4(#gn*~YtJUW7IQry*fsa7L8sStO zgRN3kpM&a2w9VqCAb>u&`=b03p1~EhBFXJ~8AQUZnH0!^e7i#xKwAd6`03#RJpai9 z&ptf*;*Wj&MbbeYrqGcAg_3YqiJ+94Kug~3RI3o}OWySde4=%D1^Kq=fHK3No{_`n zi{hp(iaB+=zon@KUE5T(+_tC|w~DzK0 zXqJUQj(s>?q+C_HZJM`VlpsOxvodbCUY6mqEfT>6KU0(yE50MeorPkeU*R^W|v;6hH*N`%F=#h6-}JTPK=-s-r(( zY7))}twtMW-CbpiaScl49xSNQtt+6!>(ysn;(Af(bivQZFrwC5<%-&r_7n+Jtx|20 zj6yQs5@simPPeH@u&Sgc?p+kNM4FR=eQ+V{!D0C5aF|)$Lx$^Xnf&Hj=J3VQZ!<|1 zC9dATR7J_j;BmJmHTPN-wcDu!jo%N0z{4e;2dP5JrtcbDKk*6C$N`Zf^$u>Ao>t)S zKu#Kq#4+4bgnXr}l+|gsbK#!lrq>k@H6QV?T?d|a!lMZ}O5fjAbxgfX zd!`sp1d!cYb+=n7KZ6R;Lqp@f26oAfvHy>^78br|6CtHmx=?*Hrqeq7*#>_;POnY> zYeuLic89sptLvIRoVx@U2;j7x0{og_+7*3p`QYGn>418d+%fV~sjb%Pt;gkhJUop) zsyyz>>0U%|xl)019Ms&W$r}Mr3x+$FPK3!Vyx1s9aQ}alR2ueN*Wzu>w3y@E9f&wR zu1^oE%hOx6_7&WsD%^KJaKU)fI}L{LR0^Zzp^F1YBg?qr6~XZ4a5-A`pxD6~Y&&Az zbizrt$Zc@sU5X%ZeLcU)O}2_^v5=kpjLl$}9l%x5MJ^8yx+Tv?qvQ?HXK(NZ2=eSB z!}Q6ko=N<-=%$abO&+3eyZwGL7=*r~yYOsjMz`R};0NFLilF|QgPtN`)A7w3kK?E=HD)KgDXG;gf8mrjXfLA*Z4dastc+c(lTiOQ{8P zIWw@f1`v5WD~G|#+J)dVba1fZIv52j5OkoK4*9iQj8~41IE9%aUX!nQ9lm19SA0{x z`D^mcUx#l#<(q#~zJ+V@EnJ6hA>~{6e!k~($jFp%1vu{cu;Hwlj)5jSzUBho`2rNqyR6FeLxRu2+V502I|mxqX}2S;le zm`g%tfZBP)41_$o6f$>pNb%~B;&nobSBK1B9WsBNkol`a7OoCi_&-9D`nX;-5D!05 zH4s;CO8O_Nh94dB`ql8GLteicelX-*1qSX9ZDZui68=MCoU2^ivdB)A_&fh2+t!1_ z;K6!kT3LIVh0%Iu2>T`Sr>*&FdQ$?4@lQ#>^GzpMU8%SZf=w25%FH9k9YNS8U$tg* z$jSK)KA#bDp1ko$j`;=#HMf~B@F4b<+%QN~PjvsP&xRh-$sw|G3YyT=6<;$0WXRA< zzvL~+v+r%q=mS*^hzUObl&FIGyiw%xoEU@1x(%`u9x|GvBOu&q~BF5XKb+W%VIKPc77@ ztD>NI^Xf_1%OWA$Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~c+Q`r^`P>xZ$i zx&h~QYTAB6S>IiKZnLV@R#Km*L9yRTrfL8$Cz9X(-Ntg|^XyqG$ckAEXUQJJ3;xg& z@LE7m^((BXHI8TliWqJ{a0Tu_#G~keN^-YYTvsi(&I{Oph~eTOPYkb9t`AvpvS9|6 zZ-9;032ha}BLes7)0;7z)bl!q^ZmCmJWd8`%ip=80y9_F^ZT1y9J}fdRgCk3_W=L^ Di$|FD literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_010/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_010/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1504565930827093f37c466bc1aa5103451caaef GIT binary patch literal 1292 zcmV+n1@rnJiwFpS%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}wMYHvLeG5D%yD zl1OE5?{d9MKnPVrMHMAH6!igAS>D~*vvXd1vAuUmQ6+e(sN^@y1NTh`{2o3KrGX$8Z*)u@a`JnnRmAqHzOMN2i|Qa z)Bwr2_HHfm?nbI)&d0U24WY&erdiyYDLu)Bnh^n05D4wr>C!U=F;YEE-mPs zrf~T*sw7sCoC}1so>O7)y&HBB0;E=H^x{^RsRFuZ0&=Bof*`{I!(Zds&ED|nco4@i zdLDMQvee@K+Q3(C3(g@$KuXq_cT){0BpOQ8gCMM~g1J;v!?LO<8^1sPx4EvQx->+U zAjv!}n2H^Smq-DYDU9Qmag$M<5p;AyGHR*8kA?g`uEqiapMYir0ScNdqD|hNtO;s4qA#gsD^5L}U#;Xs zs+lBH&?cmO8Q+=an093O6eN}D3f1nERAUJtJCRKxXv;v{E0qw$h>)?Y(zK?LTk9iX z&Zl{To}ZH$<>=x2y*RKaWNvA^(NekXLP;JH(H71ILP!K;EAR}`CIn2wj}^!i8Nb#; z)|;v*LWXEr)_I?6TyHq?2FYL7)s$jEZS?x_$q>uHph>c*H}Ce_jX<4yLs~xS1X_iy!%w$6`0yfBWDti|gv_jW+tZ(S_VMeJpWf_84W|xT!QuQ= zdnpQrf4HLMSIzAb6Jrndzf=!mg|g<+J9o3`bM=Ta{*^yqIb-aM32?h@ z*ICHi?vo7XP|w)sb+D-0XeeR)skaZ(ZtXLn`FZec^wp^j^t=0c`;RfdW5&TR*oQI*E>J9S&wbadT-aIv@2 zZkmRIzTduN2fe@9gsxSBuIKK%|K&>P$fl)IJ#9@?w`G>U^~UWqvxHDRHleRPz(OK3 zj-xGrsFH$P8~WEfw}BI{AmhY;^~K+Rgy&DUNn~v@L}I%hV%U&E1MOt#XhgHDcSK|8 zCvh*y`bWdT@gN^P9_IN;jyf5s+nJzz*BK!$qf(+$JC&SeJY{_B2~ME?NVpx<|K CQhMG1 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_010/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_010/afni_proc/_report/report.rst new file mode 100644 index 00000000..02dc001b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_010/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a024 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 010 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 010 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071658 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_010/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_010/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_010/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3c19e219b810acebefa52e9733dc3be7f03e2ab7 GIT binary patch literal 2537 zcmVb!>EBVPiAXulZ8#JONl17LK}xc>-OJ<7@U7gp z{SAHCAJD(De`OCSS%B@No0odVqYnoM2j?6d5FhaO)qnl;#Y+B{-tuvH5F!ElF^Yzk zjfgO?2ogvVhCvi(={5DJr-w-5#@UbA-G5|1WOveabAlp*13zm%T3ML8u(XqSXDjI1W4{zID+M zyc>wV6@|nMLgbqv4v~v}M8x{g$7UD>wi%D3AQ_F#xhJAYlEGVK$0l}6sVIroks|ov zB$1W-(R}!y{ld?GyC4W^wJYmH+DL0qt^j1F5;0NM94`(NcFY- zM$>F5?Y`OVDZA=^mY#=R4;3JKI!aexDp|T(lq88tI=a!Ww?Ohm7!L|kNiIQ0QNR%< zmN0~=t~dLNZtSZ16SLDdx_u){&%H*kBri*^=pd~3jVGqw*?F3!UyHD^VnR?PR;tp2 zN>zM^4kGN2L_!m^wySH;!44!Elp=ASogs1aB*O0$Q?-lxtxiMTRh6C&4nD%(HXbB2 zu!f>PH9B2$k!SED4-5iS8miHOgkQ<+Qft2D2U&Wy`@E5*SC3Z{IHGl$^Ptz6@N=5C zqa|ES#iqE<_Zly{Fm`Qf9k`Yc<$CU!p{b7{h4ZlRpi&m!$Aywmq74|Vzt9b()i9NP zWykEQ;M2LHyeU^`urz<2o@%_v(tD@!CwNH=+p4g?n9EAyv7o8-&aRxLH`vPb0Cai^ zTblJ|qh)IKb`xp^c1>Rw`o?bIJ}mr`4h{TNPS*Rn(mR!u)eo7tpy_5_mwLAU-}5Ug z5!se%4&IiETcvW%^>a|EdE;$Ks)cyFENzuaH4^0V&6;xr2F|=|ODfiE4hK<=ixhiv zv(>F~u||^Z1sH9Yq^)wPW?OWMc$zomS^%I-0f}?Xat+P$;d1R;A-19%7bzYcF0mEa z9Dd7mET-d*Ert)v93FGnV@k2h2FEiF9|jCpnfwrk3@?$xAm^|fahQk9G&kcR@4kHc|4o4iexKQ8_Vg3g!EIY)k!DWw2h;1>~ zrkJ@#rVKkAM#N#$PVjJ1nh;Ak;xJ+jkMHr0b&a_3120_SaNsdK;&8}tJhGN}#_7*^ z9nL;r)(Cy(1eqMehs;+_DYR!y9!wbKV>=eL%qhKNc#1e*p}~RMZdA=b6n#i@YJ1 zg$ajQ(k;tgd?o=WOE`2nxmUIr#tx4$YrNx>!V-s>pphbH@4R-pyp3*irYS3)wN9p;V38z1B zmFp*1D-e=Pduq?<*ELgV?`7#%Cln$Ctkg;7#29o9#oPndlXIKZsw4qFxc0pM0?y!u z*--VaRtJ)BVL=57K;Nz~2GG@kF5Y_m3eJCe;CZj#eD~)e`7RgG!xRJ?z)*6ZO-d-$ zHn^ql^b`eVdng9cNX)s8XrRc$J}@(4M+o_1sUlZxSuUCnhW9PAY+F^+Dn5|S%Kb{Q zimcM6BX2?$fZR3I9%UBCxLwYU)b>u6-aO5Yuy4DG1N7>0tMk%qwz_7wZU8^r;#9rh z5WB7=hHf&#J`qP=Sb%?e85qmZPYy_oyaIH^mg^#*W1r81)D@%OWqJEe4H9&Nr*S)4 zU58~`rGyK9<}CZ_4EUB;kT)v}s=cm(dZ$aXbo2Y~mju&AgwVT)K*k$?$Zt5hX6$H` z-G239b{pF+rMIh;XdNS2zdgAqN^cJ?0+7>MQ7GPrbzbA5fF|5Nv_0VcXCR`htOV4y z3gmo!UIAqwftQ~drrI)rPWLs+`R6?PGp;7#j?ig!Vbrxdd@t@w4w=$Q^G293syG>=M->5%>3a}H$65fM%`Nr7) z_nDQIU-*d7QmdV)zJ;grI{ei-e?6Z*nEns+FiZRw=7iL?Eqi=y2~IdbmhB}VADGPg zhzynwE?%cDsMqL@(Vwbav#E6+*R^bXkbc>C+}D@iB8uyc2HfMI=5FOL0-+U;w@=*& z^DVsEs;jX7zsxI*ghAkno`qfRI(G$ToL|@Hm(}(8R&Bn7Eo#EP`#%dN;_x6I!>N>{ z>*IjLzD2|M$P>Z%{CGWG524t>7<_hQ4g1NgP!To-`j#R|!q6^Nh1vazSt%D5KT{l! z3nN$+TNX-i(5;0Ln&gi^-+aR359B#Q4vy$6&n)|AdOkwLqlf6(U^vV><0SI!0M3?n zdI3&`DE@^f9{Iuj%`%)}Yez3#?PQRi$9|Z^B!BL?JX}0qnIwj9#Lo^IZotCau>;S8 zqxjxNls}pg6I{Btv3P#Ex8Yc^MMZaO7dPM!d-O9vyXj*ToFBP#p}oCv8&KgdKin2* z7OnWsqT}w7)?$!ACw}#bGryUS4kPTxcWyTVAKkut5dvKd&(hYXytFZ)$b>PnJhQU5 zCksOyk=R8O1c&`4&YvvRKgBxrRa^{%?{$PH$YIt^`g$j_Dc}pawg?keTPo5=tfOct zaro2;DdEdmjzgfBtEI9CwZ0Z4alYv3*B^T@4UtXH(8d9532YmYg=6ICAZ2fuSL%+B z%_51lJSXk+Gt-QzA~||WHDL>$s|Y1Q&Y;pR!pcsNZ}~Q&l_&fU(h$$QxfK8aeGKf2 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_0xc7bcfd952bdeda6f1ac3267d3fe40efe.json b/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_0xc7bcfd952bdeda6f1ac3267d3fe40efe.json new file mode 100644 index 00000000..222a48cb --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_0xc7bcfd952bdeda6f1ac3267d3fe40efe.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "010" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b4db3a46b31e28673e2440838048df6bf562857d GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tFzDKgL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=(R{&X_y_<1ynP}` literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..754afdb37cd7b5fa6b0cec3291ad9bcf06d60ffd GIT binary patch literal 1533 zcmVc!= zgLhj;`;61H2#NrPgP^T@NDf7v1wl!p6}=Lvkkr~vV4%GO4ZvH~L;H{VEBaSDl(f6H z12;}Lf?V@JlpL3QTrr@S5g_v=0fe-A9ivUz^F74nu|2=Q~ znjhtLGfy~8AUD^12~-17nk8Axa*|@eZlIK8axjF_L_`v;AXk zRx-_Eb*gifaSbx0KAg5jmqZH^vKV>Ihcs6BzG{1s0{B`;4CPug5(zZ-VhDxQ9+I>M zioHVH#r9_Rt6rfeb8~A?co-39DuRI60g)lv+`voI*o;nnMXY84}l}r#m9pIu1p$dxElEJJrbhG z`;LS}jDT3xOwz~T7|>^xMaDV!pcIvd1i6)LD#+U!J0mIsf`JZ6Ks8nPF&V#wtw9V{ zR6qlQ1Y_z=M%Rj5+T|peJRHQ4bQr%vxhXADA~pu24UuxtC#b4~J5ycI)(C)MzZsImj2uUXU zEjP95Y?*W^*KSd!58ZufUE7csw=?b+0ZvYt%aux_pUw60=u_MEECqjRb|tLF@Eno( zPp=j)TnHd^PM$5r{;sRc+e1xmI95|O*Nv~29enOq)=qoNsU|pff>RE&#O_unr97a@ z!M`+cih)py#1YE1dKg>n3C69BNcRexAS9@yw(|&QxrJbTHLBxieN1A*sUfj@uaBBG zl4ki$Q1rulKRkJEXWwhJ37%S9D_5&g%`JsJ4X65OH1HGBN3|Ea);I-TeeLen1XrMI z2s)sQ+jlIKs`dNs^J7ywGxF`s!nZTw+c_`a?u>l9v+(Us_;%0Bw>Kl--Yk536TZFw z<~yEaM@qt5$Z^}AS9Qh%ICvx}A3(je(L*R-#96}Cq;Ip=XdL(8;*ZR3tB;O$Yp;*K zczrY>J{Bi>=oeP&1*!G^hV$-_b+z7aI5^irI!JAd=pbbO9mw|Cke#z3JF`G`&W7xs z4cVOqvU@gU?`+84|A4gmm`x4V!$(qsb#-3SA4v@#3^}_RJ{WR#HM|${gaWaGe$O#h zl&4=7#_g@sN0vRQ3V-9r9$V`#^!kQVDr?&oDjQCO=OxIpby7{|B~TcDOadv^Rk~i= z5*+Z5#WJY!h*fgSR%MH0I=T7g9A$menm4gn!^)b*%|NwU?FZdn6H8D+w8UypjVnAt zu!7rkyKX1XJhR3ITu2~r;6qvzQg6+bvd}MXYbx*O^(c%YFjuRRd(v+fo>ezEY8J{m zM&&!^lC{GcD|)$uL75dY5PE!d_zjyS%c8kso2Ant)ZO!hde;50Nva&;Es>X7?5pWEBmTeED(l*lBOo;zj<3vO8y-`H3?R%(~UG={!<3Jg7F*0#ESYZmZ6mXLv$Kl%3WKkf6EStPs&(sErc zu2@(u+w$J=A9#KkJiOoW0to14*rtBBv-u$ChR|z4XfN1>J>KD}G}|SNBK9Vaf(Y<` j7!BU!fH80Y^f9?gVO;ZtZu9TjndklsImOJ&>JI<_7q973 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_report/report.rst new file mode 100644 index 00000000..83ecefcb --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_010/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a024 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 010 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 010 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012319 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_010/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_010/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_010/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f6653753e612509ca41e7b91397c0b754cc6d14b GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq!#Q8ra2rbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl$rwdh@+p;vvMzC<6OXF(FXl&r+55{*6lcK7T#-yR$+z6JiW{EvTqx|IAypE;&? z<{{2>0_68K9bvAgVZ`Ck^ISiOqr1|4q=Rs11@YhGjlagP;`L}%9U&i^t`pZDEzR8B zO8vyq+GW>aU|MEy#*KZ=^I&out?q}89uOygkE0bobOO^x@o*`+@fZe%G}_zx*odP; ze(2hWKe13B*!6fv^F6G(9&%LA^pIsb2=nE>W2&C->S{3b-Ec5er%ZSihrJV|2dZhP zLQddyA87$nF~kfl6UZ2$uO(z^UwvQtxA5QiZ_x^J425utek%%MKARJ>xq>1*EakUK zxdJB^3PMhdiP^~XVJ6{vLw-`N*W>6G-!mN^@;QV&%2ipGT1~Z4ZkB7+P8@w@xw>ZY zp<_-;kNCj$cuv}@W=WgRiG}UlW&)G(*A0XJy;i-|QL3E=;J^=&?pm%NNAEn5WM!|_ zR5~qSaoZd?u8)k+gM8mTsMOR(wb@nMo$9`H5Jxv*)J9oYJ((p-UsvO3IVT7L>1oMI zv)q85Uwc6>E9AvI4CFY|H?hX`A=JHEw<;_9lKez%b(MBkiK81w=uoiZ=#C7X<*xEX zm0NpHeCB83z-GZ=_&zG>9 z^lz1nIp`VFp&cPt(i!af3CaGqk#*BN|5Z8U0Q4K<3-3k)7I*rrB-MJERn2A{hWZ`1yB z)1x>=289e^%V#hPscRU?0a^KPnZ;s8H^Z=8SFDy zW0nF>63XAD%hElQHkj-&3DGr5ZER9%cucXuV1x}Cc4YQvr3q{C1`I~DVY4Il!q9-3 z-?P0Gdp(=t0fRk?gMpUf31dHDZ5aQ6X~T0U2|QZB=aegBdUBD>FIVZ>mXbWPJ|+a%yHg?)?Zw+kA@rom#9HclBMFVA4= z$Q=w)>{IixHeyU@zw3oKZD4Pb;tBTp^TwZH=iPZIl)m_U4nS6(rr5O%ihXmCHayJ_ z(uR*tQjEu5iUXTs!#f>h4HE~8J#2tb?=M=A4hM}F+Ux|_wAf*2E^vf4)<$U7o=Jnf zZl_aiDvUI!HIql_&5jCBf6yxTE=X4pB=0&Sl_eJ?7JcBE0MUva~GKhp*GbxY-`F4jYfVK>B@w1~tc>a?Io_%!u z<)8Za%cO%mOrawK3MJvJ5mu z1LW1ajn>y{tyLAUg{~fo53< zSY-&+cFVc@H17}?@d5&*;#R`IFs6|bue$WNtQnT z?z>cAS_oruAmQ*Z^ZVqOBiEI^I#IWuyk6Y~x<%yeG7(w}BI`F7FG{uZ91a4I(^8Jh zJ%H=H!mI+CaQdh}2i^Y`tmr*j0#Z`~alSgOfC7lXcb_S$)KEcAck4v+Pj&PMOijWW zq19-^th?)MF>XMq+=B%*x^)GVc)j|pOI$B2oi6zK7)I23t6Wi=(!L^rs#U5@l2J(J zTf*!F(&;u8309TV#J!8cmPm6_u=g*7Jv<5@9St+<`^a#8EtB8g$Q->m{#_=iqQuqv zm#Qc^89eURq~?CBqINrVpz()c5O}!6^B`47+4Nn5>nA=T8aW_xq~5{p%F_xQ9>_^! znK*`9ijc3Am9jeRb}rnr-1NHQq2?nVw(G#tPI)vTM`=9mE%75QVR+Rrt&XXeY0nhH zi2$-&tL}9x z#O^Q`dUajXhYOeB0s)-1Q-EI+OuM2FE*~7cE*((sk~>CzDz(*Gz4f?UkB4W`N0rB2 zIo*p0E>|jWj)R)}EO{f~X~A&!(upv+g_j#;3GV-ol1js#>sq|6nHF=Ly8{uY$Mxx9 zb#;2H*1m>YRE7KQM=ls|dS}59o=Rb~I&^X1Xk-~zydoIh9Ii&I9uzw`gKbBwn@%{% z7P&2syh{-TuCM2}xygf~S}bH|KVvf(W(ROpbdk%$gKow1(I|NX^!XdS0fIdH$S{5K zs%H{^AKmm3w#h^EZMWY~27}OdbQhj2&FB_98T{afUh(8}#fPwutju3`HN#$X({#Kr zz{%^Lcl)zkoT{{ZaHZBC8p~J&9*TE=QgP;S=bjYveV!U>I%qh$i@tS+ls*zT%tm&0mvm z{yKc~Dc}5?@-1AGZ{a$83n|~i5A&VRAtO`572vq%wLMLV+d= zZ3m})#lpr0>w!ET4uxZIbh!5It1rHNl@gy9CwMqctnMeI?jLVvE)Nk`_m4L+FqeeP z0JV9<41_$s6f$>pNb%~B;&nobSBK1B9WsBNkol`a7OoCi_&-9D`nX;-5D!07H4s;C zO8RH2hMyer`ql80Lteicel+Al1qSYqZDZui68>XioU2^ivdB)A_?!QcZR`F~aDOv1 zt*m{`!e}!yg#8lv)7D}&y(xjj_~#_x`KA-BuT@+J!6pkjW#$p&j*uf?aprW$$@vXF zpAmDOyzxkm`343xx1BHWAof<=Fi2ES^yyWf4LzijLuBO)G@+?0zGeouQRMQR7=y^V4YCs+GMb|!BD%Q$0knaCnzu&q~BF5XKb+W%VIKPc77@ zRZ&p9dG#dhWs#6=rkW-HNYcH?f)9{md>x<2hp=6&LON zx&`O9YTAB6+0b2mZnCP=R#Km*L9yFPrfLK)4kW+*yN%__=h?GXkQK8S&XPTb7yO|m z;FW-Z>X%qiYaG!A6fxX@;0oNHh$qnlmE>+dzpgrNofohM5yQn^o)}&axjtsa$%YwN zz6Lg3C$v)>PY67uPjAL>Qa4Qu=euuXcsv-WEq~{V3d~$xH}^NUIQG>aPtzPj_W=L^ DJyew{ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_011/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_011/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..815083f31c75886ba35a4413cf6bac833eecaf58 GIT binary patch literal 1293 zcmV+o1@ihIiwFpR%z9-4|6guzWMwXJYixQhbZu||rBzFh95oPTNtS(OH=BnNggA_r z%dQl9p3Llk5Q>C?BEoVA$^jHv?(XWbcieVkyJvQTBEcmhl5dy;{21>1E6UwH4^~22 zi5_XX?Xs)Bs`{$x=bOK?op-9oeJFWxSwK|q0tA;3ft-YwR4EwmZl2-W|K?AA@vr@{ z+a!|a;N1?*BqxPdiFdn%anMvJ?9#jUA1?&NGOfx9BeenVZV;Y&cd)z}(N1^h-F8e3 zkd$lhHX`rdOO(v`q_Vap)C9rQi-Wn+(@dy25ikRR(4L+>`PRF=(sE(0Y~JS5g3f3H zS5Ko#Vin1_KuDVz6$an?VHY7lVwFZO4%$rR&^{NCDQ#l}84ei!3eRqLhyBw*r_({t z!>(4ATHN0l_|omb1tbVa$qMs+q5*|OLxFk_gwJ1vB&Td$-y#(aon*y2V-eocz6F?#psdbhCxb#K$U21;}g6z1tr4Np)_8?21%_F6Bykw=^MZf?AH~3u@V#Qx6wcOF5Nl zF3AkE2`OL2cdj|69a%mDNoBG|wL1mXSVG87WK#&*DiHSyB?K`dWGpQ;t!U&ndPtay zSr((`7i3O3diZX)6Ic{7w=!O9Dcx?aBoB#b3TF!;!~)Vacm`<`0;b`|5@dpm-{>Oi zO_}E*L$oNWye~9v)*N|_LOV zDGG*vxTfWo_3Z)^V~>x%R1%I(b}^34b??5pMjKe$Y_B#g(3}ikyy!(0o12!mw}!{N z=hx95u(q3P?G!mWgLI{xgx=j=nP?;W#!YMzoi1`{d*Q8jpIzG^aupj3746h?I^9u! zfQs)DVl|T8EC@~r5_lN(qnnvq%|8a_QsB7%ADp=HQ)s!&)%-sy9k!-9yL-*VsnJByHp}*p?##=4V!m?IfIsM`~ zPXE`8Y?CIMI4KE+v%NNDcd()8P{)-`b14(ND#Jv2>vn_8s8VD3ow*%sI=X5=xHw#E zH+4fn-)~>BgWlh&L)R!l*E9Fs|8gaCWYbWonzkmY+A_=Dc;oi!Swg6un9x@qU?Gt? z$I%u*lyT0j4gKq_+ro*LlS%Bq`r_|D!tFYofwq!(e42EVes&tu z-e@=+osMb0PkWv2X=gkhjED;#z5M5GS4fXcTvc!*tY1x-f##ARCY3 z!6^)4{|0|dupIwW2Kdhy$NzISed7T`Dgjc|yO?em=1neBxbR;em2vbBmetP&a|r+d Dsk(EK literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_011/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_011/afni_proc/_report/report.rst new file mode 100644 index 00000000..f0897c4e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_011/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a016 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 011 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 011 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.07176 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_011/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_011/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_011/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..559413056cb8c0f4e174160e1f383a05ecc4715b GIT binary patch literal 2541 zcmV`niwFpR%z9-4|8iw>b!>EBVP@Fr5Cs>HMi(HMgl6QC^Lidh0na&6p#1xQLwI_+a;@D}u~ zf1!Qo59mMX^sn?RNO4z^o%$u3(eT@|XV0E<_AK_>{qySI{`tvD_LqF=k>E7I67eD& z4v~eaG(Z$fG!6nkjMC($dfwB+GBs!I*AqoN*oFLVdIP~Mu*qnPJn=~H0#8zYy+sqdVGCEfT zKkPU}nIFw>|MiFetZkS7k!)bkHkdofuZsC%DOV`w3S}d|S1aw*cJ`!dWpB5%lQOjl z31K92b4`DsXj+;AR*oqS zh>U6d#{U{vV*=U(sz1@UbfnC$rrM_{L+l7UH&|!gJ$;oD4S9({Hvidp`*EHSC>QYZn z{=2@i64HZw%_ax=!hWe-bG!^xYVP-JX_jkvmJKh~zLp{sX1Kuc z=xm8mXbJcw*Fjvz86%F*$^sq>*yT!*!v{w*0iXFCSGoL*1RO7s&7t716AD;_+_W&` z8RUY`E;I&bMFDf2i?}EZ=6>P95{H4i#4m*uPX&wxOa&YY7zv@kA;SIld019JctgmZ zkPr)T*QSKKMyDLx0>;$l(@w~6QJN4-FcL844Oi@OFLaHB@dGzl;$Yx%JQ8rgaWq0p zJQMV1qK;r6FmD7NcY;nX;4|*4pcGg$F83!Ki?LmZx+o~U;&_S$U!lQ+_Ju&*pv-Yu zoK9#={J|1`7cHR|3$wW#Bg*3sT>(zGnW1BG{Rt7|BIY(n&Jx-j&MZFDY-%s@so_kcEkWdD0QG7N1GL@e&RlLGG3j$HW#f;f+^T_6s6n%x9i{6% z6Hb5NDz`4NRv;wr9jiT~U)M~feVitrUs4D$uu?mo6JyXd6!REZPsVLltNA?egPV`* zPv8u0mIt=;D{ppTYUh4m|hyi*J5Eq~Bx$c9?=-3m8h~ zv&jgh+6K4u!=9qRY~RX$IFd82BO5q$i3iM#S|P@sT&fhSR)CB&IgH+}GNN^XWc~8;qA0y%xClT_YXzyW3+ucgL;+2>eQ3wP``>|x zKHw#wwpAeKoAU}N0||WpkzuMW6XDuNu8R*!c{4Os!LIm~HjQP=VDNN}FXAlKD=4aRce~+lC5JWi@f@GO=aU zoE7ZvE=~LFd3^8rc~1KrdIz%`4;yfKU^k6bW*D{gHVRUD~tK zd|l}ng;<8qbrhgiGM=$pG@VOp@&sibzNwp6$K1+XGRJTufb2Gv!+xXw2r9seZ6tjM z-enu(wN+PP|9_fQ8V!8kkzGU_;W~E%W}IKw=a<#Z`BrT{g)M5rzWYB5CX?Va z8pEj+C!1rRMjm2eyy1ypyguGcHUlVjFb1EUqDH)Uma9lR5_?O@=cS=ls!FrnidiY= z7C%!GjdLSd6{{$f;Go+GLOjVHf4+K)#~;XZh;0(GSDsn=*JM4!)Mbb0yZ&&Pbw+XM zSw5UC?c^Gq3}N&WPdt^q-F%fj@tnVOwc|muPP`zFX!hLm{&4YpWzq<~5&yRFa0?dZ zj^(>99L0CH!tBwEn&8sit;O@x-7OnMh>5mq*SFx0xa>2)y4hnCoFAEVp?$D*8&K|# zKirmB7EyF((XoB5wHPF^iJ!gY%rEAngOGU9o!brH!?(AuL!gV{Y0`R|mo_exxiG@W zH7m!*MQKPv8aa4^;jn*C@Fz|5x3SKAl^4U{dmWMqwz+kaz23=u3iv{9EW(7<&KC;o zQEw3~BMxsnAtQVl%dsgGbG1~Kq1HG2ILa11`Ql9vrUACt8QM67EkP_JL?ptt4pRPx zd82N7#4ONA%W~3AJ~GXSDbn+&R1>z~T16^J#S|*-I;`vjd&sjet32s{d>7wkxfK8a D^QP_H literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_0x562dae15b2074b2c0630186f6a706e0a.json b/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_0x562dae15b2074b2c0630186f6a706e0a.json new file mode 100644 index 00000000..2c07b8ca --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_0x562dae15b2074b2c0630186f6a706e0a.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "011" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a1cdbb0656feaf4ee08b11d2fd85863889e90b8f GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tFznikL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=%OftQ_y_<1xSb)K literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d2944a5e915720085e06a7a2798c3bdff51375ff GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~31jl3vgb!yYvE zA@-Ka@}+LKp%@ATDT-~`L;El+H3&+gEXES4l9Zja2(Y~rE5NsD58FT5uh?JNAtl>M zimYi}A&5ls@SN`)exyJCdg0H1ub#7y{+!Y5AR}%@Gm=n7T*3zC#dt_$p)c&fyZEDM z{8k(mb-jofPD!D!1cG2ikW@6y6I$q16jLIw2;zf6fBGn56lH=3NX3HZgBX=j3Vj~Y zu+TS-Pj|7`>J@s~$C99sib5~Ag}xYY7SVx?yOi(&z$zP8##{`egpW}|MkE1{Pj=nm1fLS(%ef(#D($! zq%n~6CD<;vdYuPd&+{OC(<``wqyT)k$n^@@CjkKB%woP=Wh_VregK3Lxd|5tEaNaw zvoh~H$HO%l7MVmmBMeOz2o_~6hDj(TD&|nk6(}N+3a442Z|-p)GGbK5Bt&L_=MZh- z9!we%k|D~nT*+C!>j@8Vf~>K5(cr(KN<{RWwIoP)qsy5 z01yV;w*^W0h#;QL`p0U5MV3OR3UFE=!~%l5hOZ9Ay!zz$8`KA zv<3+=q#`&(05HM+badU;(kv%};=v${WW(eo&`m0yA(6)Mnp)n$wHV|fi6#0<(J{n^R8Gh3842#Ul&4QO+a=n^zM$JN08)pe1 z_z4M*z>`25Q!qhZ{3*X z!8sy|pI}Abf>Vnr=_)y@xh1h@=~N$$27Hq2VePr9HBJPtzIJzO zoJpc;5OjbkGw*~;S?l-RXGf;A=fvBd2XA|dw|!Q;ojLJ#=E2*U;_aLjZ+A|--FfhK zr+B;nk9RW1jFf=40OPhfuj-VAWdEVSY(VPXW*0&QJjqigr+vL{qjA)O3qLZuULPFo z)?OWc`RZ^Ad_qp}(6?3_7Su+6(|LQyxZ3D99GGiDIsk1F(SeZtw?ei~57|CFWP6^F z?bAbcP7m3cCuHaJkloWmc0VAb;m3SzFdjY<8;q;7g8oQsc<+$&v*Eo%&d-K-hCIeV zP|)u<#;iR3${M$}P99n2q_X}dk2$tBo~w;br)1W)5h|Nb4Cf^gW$QSb&I-U9e@p-w z=qgpOZE;56kOdi3c?6a0wLnBIPv8{#+cU`erZI1VSOaB^lV&JAuXVrEZGr?vNC{AT za-#4M0tMG|J8rwkeZ5Wxj0=Luen2uSq~7RDrO>yxHCgnFdK|?u(U&X9J?+;^Ppcao z)=Q<1k;RU_VC+C+#V>XsDZPdUTurVHzeBS`X`4HySvs|;?w%#p)9!~&RMik}i3p0= zJbBGr0WmF%hP8p^0SjP0GqK?yFE zRjZtU%3UjOItYt_H0@ikSJ0Tk#mkuGeoB=x>iUgdg8NvC27dAQyMO*N&)<3(F`J~p zx@xajAeW82ckcDtAttSRe%rg>_1l5h>v*jPy{L!pdp+V|P~g@c?r>F^%@W2jeO<(1 nOyGYM4_+4pa$tmnU^cl*L0*fNx5f8gJI<_`J&wF literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_report/report.rst new file mode 100644 index 00000000..24532a78 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_011/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a016 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 011 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 011 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012644 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_011/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_011/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_011/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2b9e14f7a02fd7eb027867d08546e58e7e9a2375 GIT binary patch literal 2850 zcmV+-3*Gb|iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgp#RQ8HB}rbUY8n13cfTaKi`fWVT3guh?`l2YPM zdzl&B1--z3N@>`T{)*QrM+rIZl;m?BTb&XV3Ze;9&7B@R!BE{o~Vxzpv>Cb3F|s4u_uS`avAst(}i_5Du*%{vlrbYy2`^jh59B^0DbUarNQC z%-yZjPaLgWb{z($Wd^6**w;J{Cdbk8Ug+onaq>ePE%~7nm^O-s3(<{7FfgRi-qy!P z93AjO*GBxYh5Ep*$2*$uVb%4Jqk5)?EYm@lFZCT$^?X-XgQ4$+gP}TQ!mBv!9V0zZ zO+(EI03y_K-W@wo}#t3~aAyfV8`+tA*-~arx8Z9BmPza~!w_;9|vVxcu@=ESO zQQ9a9c}|e>8YBxejyWklwOl`r-g#V; zmEBfT>9l~wZFAtbJ~BcN@_l!|TvZ#DW>;-@Dtop4IJya=Hp;^4$t=0{btR4#g(9XtBpQr-ewv*=wvr^m z@7N?}xAz;Za&50x>BvCvp=s}!y^t)dT#=tBt+qPLGw?_j1`Di|Yf1|eekbuuyg8cV z#?jmD=jAwhZ@#2}NWE2^E_#`Een|3mehFuxXo!34sPdu>bC<^2siiqkvp1e9_1Ysy z;dEJMuaM`z39=F=kp@hbU&uTh*)6#6k6UEn zmvXY)l`EY~Nm+cAi(7SBP3lsP_y2WsVZp~cxuRk2l;~eyi>CkpgDC!J${R9gH+f%oj+j*gg!<`uz>`1xoyj0XR5+WEUO|j?# z$P<8r#4=w*lVrMB{DKQKKfwaQgR>NCzRuudYNJsbYp79tmS^yg!8SDtEIK)uF!;=+ zc$4;@nI6R{GALvSTRwwXNL@1#&mb2xI@9Q#i43MT^H^jiQ(mZ-V&AhoqSHu|v613ahMCT+7TJ9!3nK>8q-&Z!+a>{rDePNJzn#}8HVqb=v~j{1 zc@l%EBX=-Ju}{s%+K4fs{jL|{w1K@ziYM6XpEv#tJMZ>`T=9#~&jHBFlN7s_L9uTR z(uSw`LE7-qafiu~O(&3=-T$`N$n-)6^%{h+H#@YzY z+B0de+wF8JO@)yL)n@W2z1dOW=?_}v-UaCjg5;fNwT{v))zwP#SsZaQAuX1w4bxYPlx2>m?8gw`Nix3-av_RRC=nXp0OGD(>kwrzr|lATRBP_W(Z`q7 zk?H7GXn?$Wx6%4qtv1?fyQF|V+-6K|_sp~`jrXi@U^bL6_RTPN!FlUJ+TK(~mzT_i$lPGtS&;zg-+p20x? za#|EPVGFMF60-_u!s(;_40Qinu%h>93DlZ35a-L&3dn;9eD|rM)*33v>2959{;7`s zfT>A1BeWWAn00rREygt{m3y$DMz^kj60cXDc8TjnrPBpJAH#@RZOkWU!yxc*k>^3Gkh1B!2G>t~LNszf3_ut^~CNl7kYJF(}#1H-~s`hwo`y#5lp+H4=x`Zye=J3?~*%4eo||z)q3kusU8nc zqmRmux^lV~5nL*l;T#7w_gV5rz|(@^&ZQG!atkjuN;SCuKT0YMd#-Eowq{z)aqbR8 zoF3Pwht=ijty=vWZc!EPyC1n=yy=|=LwG8M(elv6fuoUST=9xvcyqWMEqhSx;0(4M zv2HryBwOG%IPxwfm*e`nw8>4j3Th#ro&Ai>V3-}iRnbLGf(PA_=c7^b2I%uQcmo7^ z_K{)wt6AQ!q(OU;BfxBs~Ps9 zo2KK10Zv}`yxX6>!%}hJ$NOi?3kwG7XXf87seRKztFsqS>ls4}G!-bW6>n$Y@AH{; zMkr@y6Eb8%W;$%zWQ)jnd7NWg=vD zU>0a9%}{kbT7}Woa}w*B6(E-V_9ahN!cVapX!s=Cs48T3HYccPgq#3#0UoVz_S-xDH0a3IrW!rbB)$7vq(qBTiwah}YyRUWc!k@)h5d zuXIhm(slSsDPQSL`R1?5H-8 zLV+d=Z3m})h5XtY>w!ET4su7}=wRjBmtTDQG9`XqoZ#UovAUm-x_`8uxjaN%-9K8( zz+4hC1JuqVW+3FzrI5naA;qghiq{D#UL8`pI;3=+kkZv5^H+z={~sYqeO#{^h=-r4 z8i=bmCH*s1!%q%*{c8BhA+KKzKN@nb0t5HQwlVT$3I8!M7Rnd5EV5H2{?7l%wsrq7 zxWAs6R@RCnpHxtJaJT zIXS<<=QCo?lQ$m8G2g(T<~F4~4`Of04TD7WM4w*u+0a8eIYgFEK@*y~;%jDr3>kXq zm%Jr;_PwnceW0oVF~R4b5>-&2Hwv7@i7|+*+aNpPA)`4uBBG1?AM}O;kGUKG0B;GA AdjJ3c literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_013/afni_proc/_0x78ea16f74f40a91d4904afe87bb2cb05.json b/Afni_proc_through_nipype/_subject_id_013/afni_proc/_0x78ea16f74f40a91d4904afe87bb2cb05.json new file mode 100644 index 00000000..29668348 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_013/afni_proc/_0x78ea16f74f40a91d4904afe87bb2cb05.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "013" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_013/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_013/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..aadddd0ab4dc247152f08b88e29ddd40fe736cb8 GIT binary patch literal 305 zcmV-10nYv(iwFo)%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z>xzQn&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oM6{{AT7iGe58X&NknxANP^uEdp_`R6-CVLdLR6)0#$Z

FL zG07A3{DMp=M-Sic#eqd3a|`2*mdb4vO7f71ws6)FLLwkrf@hF6Az&JQtU#v7_!X?g zT~ifB$Pg{dI`1=$YYj)0h8Xp+q9&Aa`!qs+HV6iSra%V?^D z>frLmlS-zwgY({Uvt=p!!QGijpN6gHC8UdExAIm-j71Lql|kOY+#RF}!OQGXM}w(^ zH6gZ-I;Kj_k(Q4-fmUJb@UyKBKD-DO8N{I#Av5dU_VgE>ef;|5r#Jgi!>NN-a5y{F zUW$U@m)ErXs<~ZaV(h{GS4zVE;TFcRz3$z&*JuMvo885x1zM27ix)>x&E~e{Z7<>R z?)i1J2dv%pS~o+EP9R%oC!u$D7bd!hzI79uMBF>Zyw1G!?(=IKM6P0Ep`x1^90|kY zJ}SOTh}B4TGb1=5NZ>(q93A;8aeI6ul?DPADU>yj-nm;%pQ}fd@vr;=%Nb+mOn}>I zyUtwZb{=OqhkC|7tAj<|dP520&)jM_jbvlh8M^1T$w=8*5B(LF4c>Zr7M6|b+UXb9 zar(bzWS6wj#7RjooZY11i+PpT>Qf!^tp7j?yH?dAM7j$0^z7uVKl^b+V&=lE%lwVbU86vSFO|U4;WGjkfGk$bi**Oahbt||7NvHqJIF<{7fHn2><|4 C_I|ej literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_013/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_013/afni_proc/_report/report.rst new file mode 100644 index 00000000..a2fc2602 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_013/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a001 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 013 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 013 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.075128 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_013/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_013/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_013/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4adf7c0f5a1944a1ad344a80eb45531c0d3576c7 GIT binary patch literal 2541 zcmV`niwFo)%z9-4|8iw>b!>EBVPF#7a*QNXFU3FaBy(W!2$6Be_H+9Kfheb{*s#>2@V1*5ii2w z5LuW?14OYz;~?~Oz-?T{UN=bteX=YQsR4Q^U=z}+=Zo`G`V%! zbQ}?fLLSH*m>lq(c-g|d-T` zA&g{hp3|QwnwBOPD9h)6qITL+P~uM`4UD-|@pVx%5QUjh#;0=ykx0i)7^aA-3ZH zQhjy5(KK61yKi=T%C5SfCg-8o#W{$cjndVZN}8+|^7%ZIbabO#Z-L~?AR6TIrD6#> z3K9tkMbZ$ay4LI~y0NS3Ps~o===O~?IrkdB%DZWDMF(NMZ#*&e&d$>``9_A7m1BxS zxl+wPs8r>5_#hM^Gl^wIIf=}lP#m!=c18ZwxG`V*wf07$Vu&r|Yi@8u7jU`R3cXo?ua-FYC z4?w4<@TFOAHd>}uZ#SV9D|0-JX_jkvmJKh~?n)5~GhASJ zbhyMQv;_Q?>maV~f{Z;e(@@fDe6+t6Y9a0*;r+=1_3h2?Z=dZd#b} z5OTq17aD`ZqJX*1aa9tk+$I2xfP zo(cLhQAe;3m^T8CJ3%MM@FDkAPztOWm-`cr#n_HTT@;kwaXiI>uh8H@`$C{@Q0BNS zPA4=b{$PpUM@#6%!fYGmFnOo7zi!Ab4g8 z(PDQfWMLv;o^*t)#b*+5yo5tXkh^8XF|kEVc;lU*6qE$a4f&(d5{F!UiY9^zm-|6X zmkk=smUu>k;Zfs{@a5flkgwhS_6Pu@e7D5DV{;sm(XtVsFj_W3{C0`yG+5%u<=771 zjdC`j(Q%15L2M0=YcPR_r^njj0QhK$-OxPdBeW@+;6-~u4R-pyp3*i1YS3(FN9p;V z38z1Bm1`$hD-e=Pduq?<*ELgV@1@DtClo>qtkjO@#29o9#oPndlX08XYCaGA;Og`G z3pj%tW<%AxS{+Ejg#{JJ0e!o|89-MDx_I;TD>(nzf#<${^WE=<^t(*J4pR_p07J=q zHW{H*+u)YI(^C|f?V;?4BRS(bvVlXFc)-l46=LkkrAo1C6^jM)!SFsZ%NDAdsPLd@ zR_<2{Rg6lTc5xH30OYQr_87A`#_ck8q_%g`o_cU^7C1exv>jD!__uB)tdk zvW>C-k25PPKk*S^rB*vpeG5 zAD9e%LsmTKNWN-3?(55M5ySOH1MYE9b2qaWfdED0 z?Nc|xYzwcp>MHF2ud+&`f$uxAi-;p!=dQqv^XvNjvbsLss?C?MMNQau|7XEu5*$Qh zIF;gLeeBc7LoAGsJQ0k~kJpp+0E!)q!Dpwa5ig$QD$=IJ-cs^;X=s(I((Hc4tdw($ zpDBsPxe=_2Rg_BXc_j$(Bzye%_7fg|AkQJTNyuJ#X6av&^C6}#J4Da=!(rAL#i3{U zaJICQ3ve=o(N8?_Y*woe3UIMqJ9_DA$AjcN@q##_*>lh3;o|wqq!D~0{$u0e1}w~N z%XeKkitlZN*`paX!KHf}i|40%8#am%6Wys@+<-sgvd;kPW{**Deq_>x_V>K)FBs za7$uYMA7X<$DJds#UP1I{OS{Dels5(gv5((-)i_CzIEp!1iBcWCaq6-Y2!kf3nPqN zv$D5Wl!hdvk%K1~4*N@jKWUyS*a&8?g4^-ktfz!!3D5hkp5zEEP1 zdW&coaro2;8R5%Vj!mJMtEI9GwZ7)ZQMTyGHy?X24Y0+|(8d9531S%`A`!NAkn%Uo zD|Oo=W`RapmXmh!xoJjBksdvzny>}WRiu(sOrg>)!pcsthdc|j%9H*FSwH7UxfK8a DpUVYi literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_0xdef586efabfbe19760f7ee91bc0fdaea.json b/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_0xdef586efabfbe19760f7ee91bc0fdaea.json new file mode 100644 index 00000000..386f27d1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_0xdef586efabfbe19760f7ee91bc0fdaea.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "013" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7e9f6982a593944168748912f14cf05a55945326 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tFz(umL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=zMFyn_y_<1y;LHz literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d7c5e0712b9845a5c9a5f62e467a6953c7778e7b GIT binary patch literal 1535 zcmV!= zgLhj;`;3#c2#NrPgP^T@NDf7v1wl!p6}=Lvkkr~vV4%GO4WL`qL;H{VEBaSDq_n%X z12;}Lf?~Y8$Nu}_Kj-<#25h;5eIbWoEcQtZBZv{?)1B=f zi+m;1ELNvFuQIMdhSZ1C*65OGK|&TIuKAG03g1^uFG2uc3yG<$HY1Thb1#NaNbMm= zW1!e8v|Vg(b|3Uwtrn(ldZo~q6oT&+S-u1Z;3FWxE#@m##u8HWgCMlbOgLXs6$M$6 zmU-Vf8Lr8xOcfC+a57#XT$GgvCy@knB(RuESVT~oCTWr1+!G#V#F>g9AZ9>h7;Wwz zP8tHFgz+@fYMSp_EPNUh>(GzDA5NfMPpD2~p=0I|kNQL480+HW!2nk#jWb*g{P-RL zQN(>)LLx>$3~MIkV{k0c=aogqIryLym4^hem1wGvw={M}R0aeS9g=`*s_4N_BKBsoUeJ86R@7&&dd+GD|+K@4jTX?6?<3z$y2SQSDkvC2l5UC$h;DZCZ#M zsfc5uVzXjFCaI-SKG#9Q9E?H_Ge02vlwpRSv|ENnX62^AOD|czoCwa$LR1@P0U>xX z1jpbhq>U+{&Ku{8QQzcwCyYPz1K;7`piht(LK zBeMAE)#8N<0ff%Uv&HW3y2`vg9*5__6X_0eeHC!~*RFLbSODtPs^yIT`n zfv#cD0cG60W1&>7-*=xMo6?yPZ)X;~oeAE~dGU5<#M_+(Z+C*XdtSV~8S(aJ!P}eQ z?fp02@faC3)hVn(6C0tGVHhYc6aSty3$n3WI=xDe0 z`smBoM-$*QBkHm%#4mmp;J~-s;Yu>y+V{83|Uf*y^W^Egxvf)H{UV3VHTaKJ+rWl-f2RdTD{MPW0BQ{>;AL)JHqc@xDNDr*`y1BG{@``um>B`6_UqS{kq zg+~Y~xJ|d~c8bi)*Vupy2?P#&NUe~1n_n)4zP+ufqF>abFp40*Qc3Pff4=any1~(W zq0}*|*vT&$JJeXw%N$mv=-p3L$@QNqj{{5$U{>m2#w@DhT z%l3+ea@ojx2W9HL2b&O5FZ7`O@cw2iybtiO?fI=Rpg>W9TYJ32Rb@6y7)9(&5d{(8 l|1cW7DFAce00EkfuTq%Tyyb22-Nnpv{{{JU3m@ta001gL@y`GN literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_report/report.rst new file mode 100644 index 00000000..575005ec --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_013/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a001 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 013 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 013 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.013223 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_013/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_013/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_013/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d9bb04a7598309727b3b76b897010d2ea4654f59 GIT binary patch literal 2845 zcmV+&3*z)2iwFo&%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8d;K^IChe@lQfwOM{a8=6#){UD4VJh(;`J<%r6t5El1K|KwwEi!dI{WNhxus zee4u(LEicU+L!*N{*~SZDeO|R5~oTu_VDcP-FweoTrAE4e_j0kKc6lnf6-@->79Cr zGo1kWeN9K0>uDHqIP^T%58~*KbUxBSIJAQJyLkO?@vC?(T2V*H$ENGVwMPpxcQ;c% zakP5bbr_hI8Ju!sU-LYe97ijAp`!=H$#-$I?1xTZ+9)0_L^mG8z>r3JTOS*7bifZ? z8}Y{$>I1tT?`XbX{z0Ob21U+;>dX^IcsHhQ1pPhU%0Fui~(GjPyV?4K9U9(~Z2aDHO?KN&Z?LNqHGZ8<+CO*o_;@E*GR&P^ep@V*EGGfQl0DqXc(Tx_;kg;E1~ETROELnM^;6sn3Cx zLW9DIP9sgmMv6}vW;(N4WcQgYj2KLlu4(#gn*C`p1~EhBFXJ~8AQU(nH0!^e7j8*KwAd6_}SqBJpai9&ptf* z;?I5jMbbeYrqGcAg_3YqiJ+94Kug~3RI3o}OWySde4=%D1^Kq=fHK3No{__gMPW-9 zguME&|3FgWn=!TBGt;s(-m}7i>0o|fds+BTP6R^%#_=f*ke!90K(j0a za_qzDBIT;mZPUE{ssssopOtaD^|B0?ZIK8r_?fEg_a>mX?5wa^oJsAKI+(ZGBugKE z`)w*PErc;SkZ^dI`9pHdk?YECov7PSUaxKg-6HaKkqE6hk@ee)7p2;H4hI3qX(`X; zAHa29W>x`BIDOQggYJI|R`eb%0jVj0IA57oKmkPHyU!F=YN#NmyLF=Zr#kurrY7Nx z&}y_{)}1xB7}udx?!tl^-MRuwyk33QC9W5hP8a-q3?pj2Rj#N_X-|9S$>Vd&qEoEhBENXAWN+{XUaaQR3?T zOI4Jd3?6rDQgg3WQM;Ww(D>sp2s~Wkd5|ikZ2GRj^%I{EjT{g;Qt#k)`Dq0X59Fk= zNF2j0MaWmmN?DzDI~VR*ZhBquQ1cNF+jZb+Cp?;vqcooOmiUpDFuZD*R>#!Kv}cOp zL;%^XRd>6U@-wIaJv21#Yhah$82kTxYhmFBHW5;4r3=+JV>+$FUu^J~g;mD*~p-g;cF$HUX;qsrs1 zobE*gmn#)G$3e|~mb?-0v|zY%=|q^^!i$Zv1o!_(Nu^=WbuHf3Op7_r-G+$Mpj-BQG)mq8-Ft&KK#*r28KzHO z^-SWwM@v4!HhGA??e_c0U=aF_?!vRB8Qp{@gCG3RD<0rjgah^R`RlG`*o&4-#|s0T zyzY6oKYNFz;=qsh&sG)|4Ajrezg<%MriIpKFQ7Iuh8AclP+TwF%D~^fnRO;#$;>8X z$b`&v*tE$Ok@3hGA7|j7XJnFrzVF%@7jvW<&aIAJ(;+slcbwQ5eHF?ipV@&~ps6%N z)$wQzM%T_sY-Cn}SoWJ&JXr}p#cH78lWe1=klEQ>UPUA11ego(Xq6+EQVZyEW?+3C zAo6xr4};b93&CgT;9%8tFbY;7=s+_a@@u&muO1z73NuBxCSTz?e1(*+@TPplYw{JZ z!&glCif_uda8162>+mh4d<#F!_k0c+nG&u5$2}i5oHf%i&}7HgoB>+PZ4@9BXtL0D zaN1Watgo{k$m8K4cLa_OR=;`m`8Tgp;^)N)9*z>L`w6N0M;n>TL&VknqxB5TB_T6F z?L1-zLLOZTnZG)uaCJ!GIw6ItLyA|26t5FfygFpz>X3#1BP6Mh>s15s@H15darLI8 zf2L~q$sw;_4L>>L^{e4WL(WxT;QrV)M!qcJKPATb%Ec{<>{N-r^FOj}-9HTOZ)B#G zwWnDaZDfY9Um}0nny;oeC6E~ZoCG}Ibb__jit8ZQWI?CQJc8WGBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tFzMQhL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=I}D!J_y_<1xTGPI literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_014/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_014/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..861c33a39a7d83612d882e1a065719667d63cac2 GIT binary patch literal 1538 zcmV+d2L1UTiwFo)%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=An>c>Oj`KiL6kQ0D zg=bnv^HQ9oMNkAV90YCMMY1UB3j@8Vf~>K5C&KmANTvPGFg(tYQV>L zKnMfx+k&KgNRUy@IDM2%0ex0kxHcg#?&K`60gg|Z%auywpY*lS=u^}6EF;0h>`GLP z!8sy|A73qAxDb-aIeE6&{au&2zYm(+bd074(l*lACcH}YC!Dn z>*J=0q*;C=5dGlp_fMXi*>_uQ1g92L(p7R;b4y`Q!l^zQ4frJ4quL8qYn%eFzV`NN zoJpc;0NTftnRmjato3^C^QkGF8Toc*;oBMW?VOiycSgS5S@?Fxe7oo6>&?j5n}x48 z=Ii}8-_aa1QWD+1hJ%9>$lBZ0L`?kDBW7>lYKQeo*9yr>o zy*~cp_3@baNSxrIXRS6Ysg2&I^X`ywwb5%hFxNmjKy8HR0A%kS$oAQgowFf3vp{yv zhU}gV*_{Qldp4wZHl+7IAdNm|Q-ksFk}K&YVK zbBx*Y^h;~p-adU~nUl);8$IUO+IXQhHl0#gJElJ<%vgj4{IErJUSF4hH+^-j&RW~@S z7s@(D7Q6bAv4a{bez^-l=@r!HYIJq@6`CbW+uSwH(y0w~?>wQNbw6yPDu-}OM3BVh z>1*Z^6w|`guohSzu>j^Xa~pfBm(7^uxq#AhS1&=qEo|`(jrFNgyDX+5^sA@9AO%;- ztW{2+%3UdMItYutH0@ikSI_~4iifl$Z~pqjJb&s%#B7j; z>$1IKLAh+od*?x`OG3}<+{eNFdtun|9=3@W_+Hz8;6ijip4|ljK&1MPXn7%3E oFedOniu-R00x>W`LNFU$r68_(tJ~t+zjNRH7s3_)Ch89W0Ox?^xBvhE literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_014/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_014/create_stimuli/_report/report.rst new file mode 100644 index 00000000..daf40dd1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_014/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a102 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 014 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 014 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012347 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_014/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_014/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_014/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0f4b3926d9f1530f89f9a1645b477a2049a3d432 GIT binary patch literal 2846 zcmV+(3*q!1iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=3krrJgrbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B1-jM?rMbIX zsh>DnyX-m)Ov?;TxrwiN9!!p-)xFTs1LEX|I9l;TCopXkkCvhvk6~a$qrI(9j5s>r zN3Me7f>_FLCNLR)-7xsyZ8zForPgf%4*U@5uI2i1^v)AWR(9Jh zrP~G;x6PsB`p5`9$oJj-YF%yCT0OPXt?fzsadZ<#ZIp%8lUcI#buEsT^SNA(^t5HA zRcS)cZ@r+O%@u?K4CFb}H?hVIAk@8juO=&dlKez%_moagiK82b=pbju(H$8&D?R0j zDz|r^#?hxdTwXrJ$mfft+;*|VpP*CUbcQ@830m2c8!x~QBpQr-ewLj9wvr^m@5Cf# zxA&Xvsh(wySm|;B+G|YzalOSdzbXS5jWa(dMQ6adsHMy_Mac z$I`-J#5JT!dryd?_vw}C0%&(@^wO->t4+00Y1N@t;MVEMTu<4{K7b4Vq)irnDJQEv zxz@dul;zjCxYdx=q%P%n|GzhvmVCUED;wrcF8{C~mMtd%#j-ux$>qwPxg+Kt77AtT zCjDDw;~eyj+0esWzN|CY^%I;Y*q*s9Jrwh09PZ4)aHo)aC>F}PMnVLWq$!kL03rc6 zNG!!NnkLhQ@)um7`3cSwJUmOW=IabTrZyV2u|^ujXCi|~47RCJVA09Jl)+~%#Uu zYs^yMNkaL%bXmG*(gu?~CLy{;sZC5u4NoXG7>uw%!;a0tyfk4g-jKnFHf(mpUKkoO z^ZT}!Vy|ygJY=v(aWK?UJZ0>stPSHIFl~4aC4t8a_>6L8j68ix``t0c?AjJqEigtW z6i*Pt6&iHWF0)YE6Dbzia7<(D_EY>#kU}S9qS+K{n6BTq891hH29{3k$0pOyV(N2f zrO=>os?$i*iIL({hMCT+7TE(P3u6Y;q-&Z!-zEWvDI8c#zb$GMn+A(b+Bjj1yaI!% zBX>AVu}{q>+L$q+{jL|{w1K^8il^8coHzaoJMY8oT=|R7&jHBFlN7s_L9uTR(}t({ zLE7-qafVriK(&3=VLYticn-)6^%>|Co#@ZOo+jD8K z+v|2~ErpQ=^;YsIz1daa=?_}v-UaCjg5;g&Qdj9!8fvZeJdQrOVBjOrutqpj$6%|} z)aRgj5^b|w%H=>G+R|t0G|KkfoC5c zefgIG{xazx4^!yKfI>+)t3*&rEubauc55|=_7(5?Lq5?uyn=k&bU>M5P|wKW3q_%% z3qoGq9z4)gQP)bUmfsfC;)7zogtWqzA#6bwK-^WOE>RW>+AdK?QfoJkKEAAuOh>mu z1LW1a&Gy%7z1dMa6$SL+L&ns0&rHkGc+U!lri1yR?PcLVIT4Hm7{{kLKz0^}0?o1z z$gvM+iSkZg51f-S(;(T>h0V0UNcb_S$)Ko!E_Zmd=&vf($OijWW zq227jth?)MF>XMq+=B%*dkqDYc%$~LM_ex}-5&V)7)I1ayHZtK(w-uLs#R(&l2J(J zTeqEqQuqv zm#Qc^89eUQrPf}%s`k1Kpz)_s5O}!E^B`47*$iBR8zep<8aW_xq~5{p%F`+w9>_^! znK*`9ijc2Xl!`j*b}rnr-0ZsIk>(>Fw(G#tPIxpWM`=9kE%Re7VR+Rrt&W+OS z#O^Q`dUajXM+=wW0s)-1Q-EI+OuM2FE*~7cE*((sk~>CzDs|L)qy4zjh)1Wsq|6nHF=Ly8{tt$MxA^ zb#->D*1v{ZRE7KQCoULodZ)n%o=Rb~I&yK~Xk-~zydoIg9IZyH9uzw`gKbA>m`*s& z7P&2syi3XDxPe|ManlDywJ2uiKNB+;WruK8bb%|tgKow1(KvYn^!XdS0fIdH$S{5K zs%IL1AKmm3w#h^EZFew827}OdbQhj2t>_j!8T{Z!Uhx#ROL>uOv*)k7T46uBX*ymQ z;N*4ByMy^VEENZSynnX3v}B+`X7TNkIxsD?K7RqVnK86LQ-R_}`E~~WKA&4>^3}|I zLWWGp%!W;yY!Mlcobho6{&_|w85sDkopCWos^Q$~*fkwu<9f%5jWJN6O!Ao>m<5_j zGgKXq*I{)1oWy2k4TxpGeZ`ZN@H4Ci8a~N3>k65j&E-`zMoxga0FT!=aw)ZdE@uul zHUJ`TXYDXp+qe*Xjt&miTnD3I4T26e(;>f>i}Bjg5vMRyglqB@uESSI`3i5!w{T6q zh3oJwqm^?8wQE$i9WsRv!RD{a)_*+f+jR|#n;RL88YA4&L08B%PD*ylh literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_0xe09c3b6f1c6fa35a9899bf0bfc04377e.json b/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_0xe09c3b6f1c6fa35a9899bf0bfc04377e.json new file mode 100644 index 00000000..bb9ca7e6 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_0xe09c3b6f1c6fa35a9899bf0bfc04377e.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "015" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e79b582bcb883b6443e1843ce5cd91590c7b8af0 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zc>u;XIHOMHj+k z;hEOaXdbcS7C{lfa1gY07s;ZiGax958qp(>3Q3La1P0no&;Z<3S+sxDujsGzlF~fv zz>U+1U|1q~dC$3*hn&k_FTMNc`UU&wFB#2_GU8@5BMD{1C9H2=jE6)P`qD1Ei$99S zZ^dy@*Yk+sloa|}AP80jNk!8F&-? zgy#-XA{>y@*5DE;jv|@>ulWck65dx$FHj(X;sQds){J>dn)?ZfxKKWj zGzOBs0^7ybM(1JI^E?RO^a`#ZC?MZ0a=kpnrBwUkWkx9fe!q8}eU{O|Ln1oWIVh+h%f+P~DaGDkR_CEI^B1UCQLSzPb4rp@^ zVA6n)3{jTlN>1WkO?ZG4WE}=E2?k?oH&d*#gsX)5$j8BeFu=O_xZj7B$&wsa13rEL zLKt}86(r?Df{bd$>7!%{=!?oCXN&|yN-T~La4XqVkarYx##n?10v(_bD=gt-JboKm z{e&1%5gZ~Qm|%ZAx@vQ2mJ>npU=T*KLGlXZCKb;RXOI~o6|!~{W~W945jmTT-pr+0 zwFD~)>@%$5si5wTrsizG_yI#hBBWXJNq!Fmg=L4mFeD7KU`lE?GAv*-fjU7=CTWvI z+{$>8AeopI3v+?3jPzU^1amlye2DxI9bgI(e%A7gipd77FP!dYh5edKYz)W|W2-|nj+h7GmQYI|E7uniCJ_dpoeCgjDPoCP+(@hNk;Qfd5)zA+koYPz0fB$$|8iK;O; zM?~@StHlc!LJ~PA&lbDC>oWKEL6hr_(Ui$`1WIZ-k6@N-1slj=9Y*UT66;P4h~0mE z+%%Ci%WnjtAKd@($#XONzSlxZ8$sPm(>Vy->BrDe&rRZ?DFg zB&r6WeN35oCtS)}ujf9Wn$n(;Z+jNL?J?i>dHHr`dLm_lXUiQ&8?qHLX1(|HM4<4;K-gStx9 zYulU=IAoy=sysrK?6siaUL4UW^tb0I>zl^B3B?*z);MW~((_uIoo*9KP=u6#YEOyU2aLO8blpg2-V&GFwQ!)mO?w-`>__(JSh46vsqgtxE23zg~D&-QciZ zDC-zm?CML#4r;9Ug6kI8@ zRylzxccr}PAT0XQwC})PK?f8rUdAlv7yuHWhfxR0f%?-x(L`}Jq^P|A)b~ZQ71>4%g9j;2VS;9D`Z;CjK n3H*=Z{+oh842+Nv%tlu!h-=>Jw)p;C?z{g2Bk=LD>JI<_AjRxq literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_report/report.rst new file mode 100644 index 00000000..a9d43847 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_015/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a074 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 015 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 015 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012287 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_015/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_015/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_015/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f5b30d9e38d0aa2ece7eca52883f272a896be41e GIT binary patch literal 2848 zcmV+*3*Yn~iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq!#Q5IDtrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`SJr|M=IZ3&~&fnPYmV z9^yrey}F+}PJV4<^Ua@?PlZ0dev}94+~w6PPxNhYQh-M=&s?(cad_MjRdR zL)S+9v4#4;uE#r??_t&TkfVC0hb+@Um@oGoQ}ujTSA(JNhJ&FxWx}gC>>VRLP)$P> zavQwvBP~EGhM1vc0vRLpwS-LVtMAwTyCwho$7l&ThC(<+zZV5DpUsKcTtN}GO8Jda zuE1?Q5DUUqOw2~64>JkZ8}j37y&gxm_@3$Tkk29HQLf6e)M~1Yad7ow`nnoNi#b6MNKZ>v zn&k%c{MHM4Ss^dxVIaquzKJ!i525bWx>Z@(ljO&0tE;rTN*vudLH|eNJbC<^2siiqkvp1e9b?FhLaJnqB zS1j<~1lc^7Ck>b^zmSz`qoP*#tGjAj0!}w_;)YlxizWGMbtL6Q9Iao;t&)k6UEnmvXY) zm8+dgNm+cAi(7SBP3lsP_y2QqVZp~cLdh_9gxq$%P_mo^6ifDSM-WP$xl<6f^Z62X zlm3m8aSnRMbZA@1m2?KXeu8rZ+f%oj+l5>ShdVPc*vSjqg?vfZNQhvZG{uq&pg;f) z63apfO_J$i=?gB<`~>F+9-O6E^K}LvQyY!iSVN8CvjT&M47RCJVA09Jgu!Pn#hbMM z%=9QukwGCt*zy_7Lh71{cm}zk(V0f?Ok^;%na3hCnesxt6#Jf?;$tSoV+JDzV+Q*S z)|jQhlZ5hj>9Tasqzxu}OhR;xQX89;8Xi+@Fc@Kjh8>yxS!u#rya9s|ZP@IHJvTI9 z=J#wb#a_>*c)(zf;$Wbqc*59ESR2MaVA}8;N&=7O@EPUG7|q*D>Ue$U1p)SSD?7ShGQBdx0m8?f)qL-6V0Yr!*u<=&A<_L)3Sr{>xCSB9?*)|C{Okv+*`t5>7v1zc_q>U5C$jdXB zI&uet6#LYCtc@5G+V6THP8-;pq zRiA3}lBpq`P#=ZoT| zE{ZvItN%b#3%a(cYPl^@Ej}pbHj$R!FvJbW0*Jec)FH}ZPTM8wNNVoJ(Z`q7k?H7G zXn?$Wx6%4qtu@+eyR3jd+-6K|_sp~`jrXi@U^X`0i6hl^QC@>2959{;7`sfT>A1 zBeWWAn00rREygt{m3y$DMz^kj60cXEc8TjnrPBpJAH#@RZ6dYoRF{#T4p zPwWnJp;y;6eK>asE)c+JI|cX^!L%#-;PS!2>(T-BF1cgmCsJFj)mx9s^>}z1eN=hW zmD9b5;But`=Qyaj&yqI+o)!#uE}aOITX?Zimf-&XD5*5;xvs_AnrSh|xjPVXdR(6# zR+p!@YVB*dMOC=(e&T}hrgs_);i(ix%R?6jjz*So#Vdm0&Eayi>_M@EGuU>-y6J?I zY?0gG$h#Cl;QD%glbbv!s>MQf_A@qvVRislMHjg|Jm{7@AB~bXK%c+C8z9KDj||f% zuX-l&_t8xsVVgWe-*)@`WH1PQM|a`b(u{7wlfe&O_ljpz$cb>EUOIo>)eL*lP1Eth z04J||-tEucVW~Lqd7NWs=M6z%0;I znxX1=vi*GM2Ii8G z8K8C^F#{owE``ip9a6kHq;?*JZSBK1BCuIKWkcF#57XFWrq&}`!4aCDQR1L({ zo09&8s^MpcynZ$O?2y;5hMx>MSAl{1Q`;E%vV{Mf80RV%w=A+#CH~I;$hLL=Fu1>- znO4@GW?{6R8Nz;v{Ap{xn%doig(Xa!1H*kgr-ZI^^X1 z2A|J}IZxhrB*%OMgPPmS7kChROKun>swevNs?UZV(#avRatfNz)D>Sd17yh1OTXkT y$+Pcm&FBMF4TuRo|CFeL`n*x(@|+lh$hr-(6CN^}qaz}^xc>oo#!m&g8~^}7CYXl+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_016/afni_proc/_0xf78a12fdff76772b70f5f757c88ec718.json b/Afni_proc_through_nipype/_subject_id_016/afni_proc/_0xf78a12fdff76772b70f5f757c88ec718.json new file mode 100644 index 00000000..67b63ec7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_016/afni_proc/_0xf78a12fdff76772b70f5f757c88ec718.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "016" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_016/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_016/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0d062df21ceeec570aca92efa36448c2c7bc2b7b GIT binary patch literal 305 zcmV-10nYv(iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ ztFnUP&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMQG zMPg67U3=`A-^~1G=I86bv#s~)$9*Juc~L@C@)87>5P=+rmsA-T@2;QX+yCYdfAMep zfm2kZ34T4}!3|3g%Kx4a=&cZ2bQC-{!iK>e3KZ zf+X{_U@CSPULplprZA3MmKR_wElTh1pQ!{rlH4%JND!zBt*v2ncP0QO;j*l(S^B#t zR7wS@6{ZZ*$pYHlg4$9jD|kW@nodBXt!q!lW6Vq`D$E9cJV!tjaX-{hs40-Zl|}eC ztQh*RJyA&sDHucb1wm{Ln%3k4i<^wuA>FHE z8PZ8Gcql|kIT5eDyJxH_iINx@Z7iwJEsI*@2_{8)iZk@0JN zWWA}1B4mh`Wu5oA#`T6HZ;$#)JA{MdpyE2Fldr2>dm|TwxcYzOcY9#+ly$X zgX-Y&=F>{1wS$Y^a-(G_``+D|OP__U7bT?2V>k0wMvO%c{*^)A!Q36B3c<_lsH4GD z!kQ47Go|D}?!f4GftY_EIw%@x|f%4T=DX@M4G^z!8(s@dGOyqy(1 z-o3br_JFn9Uh8Ja(J5q0?IiT>?$SgT(YJ15lj!wFnAf?t-hFmugUD5EEL3ze)9dx) z;~^@(ONiA-b~7h9AxPj+bQ}$QmAE}VmP!MG^AyUONAKLtrq9(Q%J^6QfaQ#_GbX_8 zwq0i-bGuJ6oI`zMpVz^nZlj@u@u%*3IE`du)hW8?cF0)Sc@O;+mkr)}c^a0D>e}g- zS8@8kW@MMN(ZoqfFr3|$DZ7OYMTa`BZJG<2;#C7q|J4_N{}G-)-6oN>$q\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_016/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_016/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fdef552d2fc6b515679068ab85b24eeb1745cd97 GIT binary patch literal 2542 zcmVb!>EBVP2>X-r-y0c#@UbA-M?l(WOveaYl0(60zYd$Tv?dAvb2+> zx6hkSV&ancNSa0{3}JAVuJ0$l9Wx_8X6ag#_%ZQtHeN|DJ%WxgpY5VOb+Yt89tR$l zU%7Y)-VJ0QMIp6<5c^h0LhKSBQ@K9$i4{hHZN=j#NJe98?ul&CWbg{xu|*uKSgOkC zL=pUOk_hE~G#~u?Z=db_`k$-m8ulHNxs!gT6qRzJq!daOv$$O=Z`L-qrRsLIc)y%6 zwF!w}By;nU@mSUMEWIKRh%ZAb$B;rpH4LrOwp#Uey{Y!H^nn}L$dwbH%xVwi*b8Mz z+fxgyEtizaR_R_2^Zqw=gZ;gZ-szcYuLU@c5^M)<5M}9mk2S;G>$J^Y2fVmSMt%@s zCkY|d*AE*_tEIO4R=20_Ylm5S8G1cjfauvML;FU}($!M2SY(opVYcfnkbE4*gF>;a zl%b;}k%&+v4PmMq&Aw`w`h#TS-^|iWFY$|_m!;PX5Z3$VW6S95J;~B9WLQ}_ zp*WJOTgC0_mi!tYMZ_P;lqG0w-_W0d9Y{1NMe;m5L+a*9gx@J)YF7_iorborsXYT6 zd`P@qGDuip4b^yJcDmLg&)`QM7zC&`G_wNwQD*olDB<&~9)?iOnf*)5iK%9Wby=b&2i#=FI0EhM{@;!e3-qd_j;tT`uO;LN*rilv$@ z;2_FziD7SUc5A0ns?lV30YyRI1(@tLV-hs`ycSI?2zz= zkUb$GHsY>L33rW7Id%k$sl%t8kl~^~Z zgqC-TzU+Z3olvz;HM zmwOhR{=ijkoMEj%NZvcpdS<__TWb3tOFuuO5Mf}YPBJIPplhnu0kEE&+pKOCi@*=A zKdV27Gq_=UhiNapVynm>IPrjD5LWRkmzJDOuaY`^c);Xv;#S zZN;kIua>qjDsMW9Q<+`u+Dyg6U#P*{vytz`k7?(2;6&w2ERLQTRQq0{QZsOxvcV!R8basvWt z^>q`NxUN3!Gt;YPuMc)Ug&s@q)Eib?+cz~}wWiu;8HHqCC@yXwy?)!&Aga73Zk#2y zjGD88{ll4QU%X5nz8r7d*~d;0p^fs^-Hn&ezWwb+UPZa7o9C)1zZpF0H?{VDr(yMb zI=J!saU6%VCd)uoSlJ8%M;hifVK#O*lvurk*|jGPxID0%#ws%mTZ%c~sGD_bF80st zS!uqmbc`Y_!{<5<(Q6sc*e#mQr8Rkiau46u&8uT>WiFXxxDh~ho9bS_QGW^*U?&ce zz60;_jdA$Xg_V_``G~MmtDUL7g{Sj6{KYzdIiKE`{x|e+OX3&ijMTP~JwCMrXB?o* z_7c!HOorYfgXM#Z*SQPob+%)SCtBBP>YYb*JsTgTpEMrzjpet9;d-M1_c*AzTltGX zh~n|?xf@}=g;!g34fg*hd8N@X2wd4i#1*b{*I>r^b$xzWU7v5&<~OiKE!cPeXTf9= z9>rrgm6CLQ9MITDER4525sWX7*VFY7iXDu>XGhVApUetXX;WfvDaE2Rw98x4?0(g% zRtk%sDT&905v+=>NM$(a*1`x+^2eVq-{J8G@*H7@MC_Gkmi;}w9AWCQL-b-W9Oj*I z68UxjXG=T10w+Th|J)OgQikM$4<|2O?PQQ%CVrU2G=J`Sf4F$QvS#6)*%S2y5~c(Q)@gYcWV-6Tf)JnZKQn4kO~ncWyTVAK$)v6#`uh&(hYrytHwl%!M&V zo>e_KP^2M=Xzbz%hQt0n!JjNO-o-leRbC8(?{!2b*x}YK_IfAtDc}pawg?keyI88S zN4-U~j5xgOgpBazEXScx%v;Lp1C^JYUAYwi E0A&a2l>h($ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_0x4506aaa53352c49a81e65aa0d9ecb066.json b/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_0x4506aaa53352c49a81e65aa0d9ecb066.json new file mode 100644 index 00000000..f212a5fd --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_0x4506aaa53352c49a81e65aa0d9ecb066.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "016" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..aec6e5dc1751be1c80d87782083021cdee971a01 GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFgy-${tk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=PP8$P_y_<1awQyL literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a6cdcab8c2ba33d1104fa6a4ac8bf745d54c59a6 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&X?j6B3XtsX@@vvBg*-Rg!X&76G=GVg>Xz?P2>z`xW~uJEUYg zNs%?JD+G~99-i+zhac&~UoZXn@3jl|$v)>SIZVJ!SOO8_-~u0*7Z(AjJiD}m@BELv z_FI0GSF?G-X$*O`>Pw&+h|(-hBbH~&BxE3|^uxnE`}9$tGm=Q*6CFyC4nk6(~S zf;_usTdpwCK+lymSwDJl;Max2)Bkhe8U9-6~%SkYKIEW+3FnWn{Q(7cMaLkNUnpnFjvs0rIWXh+bH&SI* zEuxws`-JN7SWtJyQ&T?VVxN-{NM)9Mn%{lNaM^J$jDS<_ACubkgi72@s7_RqN!m0K zHxm&>L`7!Bf>cr~qin8;f;kxVdl>lv*{2L6{G{O-6`7Trf)`%WY&jO3nT04f&H_^C zMGzdLr%*N~VG>@Xz``F`rp^+mLzui|OiW_R7(exg4a2qIu zB$NG?XO;47nRF@FY*D5U-F<0Xn~)c`Q|{XUC#THiQl;T9+4b@06VvrH0e@h^r7)_a6*S=YH@VQ%BJB=-;oZy%VPBF}4vs;~n z@_;G_|B}G51AQrCM=00mVQjT07&kT|*|Ro5pP-T&&O@B#TEY5iRK?Nin8b!tL1On_ z9o0=F_2QeL=!f@yeEiJJzUMUvo?2WhSF2IQErdM{r~IhZ@Dq}UmFK!rI|W{T?e10t zSD-5hI-rc3cO;ambi3}eV^f+l@@>w-w>jb4JTKqYjC@z^w}*_Y^={3}q&#$l2BKPRJ7q#0vTy z$Cxcozp}=StkQC&cp-WYIdQrt=c8#vhYFf_0Uy zR<;BOJY=y9Dm`MA>@_-A*o^7q*|+B?>+8n6j>Q^Q)-G9h(J9+uSkD!l?~)_dKDVbw8|=GKY9eB$&kd z>1*Z^7SqzyuohSyav$e&a~pe;Et@eVQi-MKPPT*vx3tAKHr9@n+C?#qp9-%y`wi%9QtAZ{!0&k-6wj))$2(k^X0wE0$X@4R o5CZ=1hlAHSU<@1}K(p~x3geo$y3N1;BJH{V0eaQux#|x906vZFZ2$lO literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_report/report.rst new file mode 100644 index 00000000..bf9e11d8 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_016/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a015 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 016 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 016 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.01247 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_016/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_016/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_016/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..61af3d9a11c9558c625313b239419cc00c67212e GIT binary patch literal 2845 zcmV+&3*z)2iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIJT2%CuuSnj?&grDgq!#Q5IDtrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`!h567xZ7Bp|6xj=qvOtNMV}O@7{a%;$m?Y_{ZYE{`1*F@)v#XnBJ*} zIMWG`-`8}6xt@j*heOYE{UDC+O6MaTghMNce~j1u8NZ5Gqh)o3d~CW-Tzj-Ib9XEC z6GtnTU59~bnZYSH_BGFg$#Jy27dm=CoctI^OMd7Crj6p^LUiLX3=CS*UVCcKyV5m-+@G1^_$4C!U(@=$6 zk=K2s1xUpZGqg+~V}!nzkg0wB!w)~*_y7A|w1gZ(A)KN=ih`KW=EQ8Spa@%~{6;BP z;Bul+DCT2gHZpyfNx0sSpH%DhIJ(96OoxYj4k3?nRhFezQ*D%+@I$1#mg~pSdru@;*=;qI zP77GvHV2ODBO~-6-*@*bHMLP~cGY&Lx+m?&(M=e&Q5IHDX35ew)i_$r34%a+TC&nC zH=yVDUeL=5c`*+IInMM=tZ{t^b+6W~%F3Q3KT%sB#H1lHi_Bo z{YI-I?Mc;+3QcG2C&tlzdSyBQTAeDrG|RP0L#>yaHK-N1b-FUwRrazE;le*@k%eE%$#Pe& zb}l7l@pUe4)nzrQOF7>E>E^T(Y5$q& zQJf-!LWZ#AGnj?cH52g+azUdrjoz8aU}`guMP@SPg?cIWJv+t6Op3=0MhwOb_8F`( zOMxc|7Gd&O!kC}E?GW{&3J_l9` z4GJeZjWih>DL!SG>C9@8-Dk2eVlYj*rs=b75^$KpzQy$01&w0UV6jOXCybGoXE1f- z4hAXqsrgtNF($O%^+KFBus2EZ1bhAS#@}J*-QE&PUw&~8Kvtfl*tHCbeRGgDJk1Z% zhL4U@jK^Mz1Dj&QI~imR69@A>Y=BVj&s&fV2aV_2>;%}f*kNeSafCM3MrhWaNrT;P zr&Dbzj5MezjtWnI&?@&XNLLUf?>(0~O1E5BtIg+e^yviyAAyE7!l^n2TcxT# z2i22ko5f8*0DW-xMfoK>gDYx9lH2t%h=f}+DUb#Ec84l}whVId^TPvp{*woueR%ZM z-}?Bgq=P(6p(6tdCE=_RK`AwXmb}}kRw3Hgyz3A6MC-rWrjgLBZtoy#Z6rl zbLv+Ap{5peZBx~9TcTQgSj=rAEx%!i8;}JMcNM8al*OF3OVp9n+>N78E~_Kc(XG$` zdG&sy^^ICeERFh8)pEc_=Yf}sfG_!I}o&caZjSr!60 z_R(~aa#iWJY2JQUf&|@XW!!GPEW>46B!UZmrYie`3Fs|5D{d5LQhT`$=B+l#(kI`4 zp9)M1VN4Dr93E!=oE&rHy0Tj*>h{yutJ^@gh`e1SLTgTB{o&$8sdk>jK>%`E%5k}e zaGjT!RX`I?ANA*;``>{TeLzbooN24j{cCTNjM|4 z8f}<$ca<&1H7J#Pu%Je_u7DD+SD$r>>qVv01wWs_h+1!zD{52PQzTHeO0`Kc3dwv& zn4Lg6-KHYJs*;+xcTw09X-*3E!G*8~hvB2cVPnak27fzFuTB4JMyMxt zhq=(J>zY2Cy95^q;Iy3r{F-3e6@75|;NW%XfO?nQG4fNXt=8(T$K`rFJdHlCJnqWr zUPN%YQh{?E)ZFLE8v#!XhC7!|gvl+u*eFYI|9_lR8unb*;%&{enB&|Xh&Vm2PYCh*ufcWJ7V2*!b!Hs zZE)mWiXd=(J-^9K9v0PNAv^mSo53(UfUBa5Tpk{DOP-HL$s3?A-r@}q62GI zllX_|rjM{q9-{BM{eChSgubJ@@N8*Dx8TX(2XA`CBW!MMkykwDue+LIFS=vgFF-NN5-0Ijh9b)5p$BB*6SD{RDnH`t~no2WN z9gkLFboHFXdS(TPWxspHla=sOtOgoB$u?>VnVl7KDjFdtz+8YwD;&9$T0oaG18Zvl zk+-vQ7_6*a2tGpx2P>|FQLq9*2b$@SU(3aK<>-i0m?`2l`HI)!E2ezKx8<9^Cg1#Z z_~ui-`M2d;xF+Aib@&!izJ)jQJ)c8Hri3fNanFYhXVr8JG}-YrXMk3P^#X(fO%~b? zPWy_5wKdiQc|05lN8spS<-1p3e)lRReqNm5;V7|skdS(Cw4S*MTFby(5;6nS z&Ld_Zf7Wd7=q`RjztUmdb=b;!d15t7u$^{Rn*_?4=GxO!XC zzfv{);*i&`hF=`=`ql8WA?GSEaDQ$aBVU&AUlZe8<>Hn_cB;hR`5)P~9vlV_)-%(} z+S4qI)-yxcFOffO%~#Xg5=e}HO#+^8I>G8n#dQ#DvY=CD9zpI1xgzZQ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_017/afni_proc/_0x75135d983f2d910c596b1534afaa6e07.json b/Afni_proc_through_nipype/_subject_id_017/afni_proc/_0x75135d983f2d910c596b1534afaa6e07.json new file mode 100644 index 00000000..4c0f456d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_017/afni_proc/_0x75135d983f2d910c596b1534afaa6e07.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "017" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_017/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_017/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..39e13dc0c19344f68756c8527f350b050637bdc8 GIT binary patch literal 303 zcmV+~0nq**iwFpU%z9-4|6gftaCLNZE^upXdMdtIrzytKMy^bgH5GG>}nPqBKyjSm2U&r6ShX>o)#5|n0 zoo>7^x^^C8_~FnJ>~!83rI_X=L2#Y)uI2(u;=1Ju8ebC5JR6|men$Ec${O?oZP7H~ z+!jsOk0k52i_c9~wFVXQc_ND4RT5Q0@ax3nw|})op?#h`84X!6i{T{6V|bP&?@n6lQ0gN>V#c+_ra5yfLNwgIbx(X;N304Q}1@>HzV3P8F;rI zQv)RB+Pjs=yE}=J86Q>F)`S`%n0m1@ReGEWH6;QjAQ0NK^QYf>w^dp$%(cyXTw2f> zP2l=zR7tEN85am?HKW4ddpqnR1W2sX=*3Q(sT|rD0y3p-j3C1S!(Zds_3of|+V6Ba z=y}-H%2JE_D}7(O4Y-5^0V!Ew-cB^2kZ34S4}!3|4CWF|4NJ?ssQv!<-{#tq>cS9J zfF!fDU@Ep4ULrYIrZA2hmgitB%?s}yUZ@y7lH4#zNf4+Kt*xBkr7=K3xGYL*7XI!E zl~6${g$aXXJcqWIQ(FjS1&>KglQBrNb?eD!gqbNsiP^x9=Lm=*?#CK(H31U1G7lez zB|{%JCrT+H0b{7XB8aU<)0li@ag$M<5_EJ-QfjHekGcFIu0{d^pMa(W0SX$=rMp!u zLplit4}~Zx#^SYi4~$g>Q4%AgjV0B&1+r^W4Z4&I>0W6<)(HGRRC8r+Gu9k8v z)l`xRXcJPti0@Q$OgplC0+PyPiE8%?s=x2-A-Up$lStst)+CExsp62qA8p;gb)izm*5$sO$eBVA4`x4GJd6t ztT$zzhYZo8sPaD3xLR}M4U)gAs|m$|TI(Kn&IVWp22GNAy?M9abd>p)i9(5TdlgM} zP#s)ee_G0T?ldfA-@E%W>9er)qJU&^>~7Y`h_T4Qzf#Crn7e~SA$XY{wKSMg zSQBD<)G}p!fwVko1zLrz!%sI``0zYbWDti|gv_jVo711S_VMeJpWf_8HKz_5!Qt#w zb14djf4HILSM}`z6Jrndzf=vK6&2{g-xj`FP+H5a2Ezq0{UcNkzDmFJQZ)*vU zcQ0b*j4^h>1i0;{ z>&#_t`$>v(sB7%=Dp=I5)s!&)+}#eRk!-9yNB7(o87VvKp}*p?##=4V!?IRgIsNh` zPXE`8Y?CIMI4KDRqP;X_H?X1TP{)-`b0rhJD#Jv2=Qe}Ps8VD3ox2TeI=X5=xY%84 zH+4fn-|tQ$lTqxy`r_|D!tFYofwqPx-QG!hcG}C1 z)3a_TIXN4|-IHFQW|R(~gZ$j7&f}D9@>jED;nIJt%Q*T6n-+lfa|r+d D$Ow3? literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_017/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_017/afni_proc/_report/report.rst new file mode 100644 index 00000000..2ba3b7fd --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_017/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a056 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 017 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 017 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.074692 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_017/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_017/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_017/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b276705d8c17056dac07182a68afe9f4a2e2b2ea GIT binary patch literal 2541 zcmV`niwFpU%z9-4|8iw>b!>EBVP z{SAHTd;de<`qsbFvmnJ?U7Y$Qn$hsvvuDqqbM`Fu+x_$E-~RFGO8%GL@tyE6#De3; zI2s}g6JdY|7Dy6?K@?}{P4&2^he_hb*^k-%zhpmT_tJH9f+OMte%5@vvM_gfX(vnX zo;97sj_bsS!Zbo*2!pe9eJ}B?m>T&pOV^^rj~x$Zh+W6WM63^e#|)#uGUIU+B%`r8_e3;FGI)cn*mP`DDpo~w ztO$PCNrZAgnveeZ>kI!@{_{Lt!@g}$chX^bDof0vtyPwgNYZvh?axRX27!ZKKx#FRnNvKZvlM zgplf+2aTrLQrdm9+f(+`gDkxSy&f(=^mLT2eye2ZYEhCTD(UD(yWRrHr(rxONF})h z9Yw*39D;-)Om(Z-S9D`f)t{Q3zR~R)S$gp`ekFNXdR+%$y>C1<_0I0IEd5f1l@$|$ zBe7DIwklQeEk2AKeEPgF z$J=oR2@R~F=+BH!*IeWo{Kx}?0F{PnbRgl^bGy`EuY63^JPIDgg zIum|E^LD(1i>cTYxAmueQGQ^eD}Dc1r3WeP}~YnE$xmJgR}Ukfpca$KZ% zbhN}MvN-&P=^&=#juFF0We$%y>@lU-WrO1xhmQh=t4x06gbXi{%^>Hn8*!M2%rrOS z5#)l+&NT){GKZPYNi1`NnO}IY#8K!i@f$A1Qx0Pe6AnilMqDUxh%o;H7M2w{tiffE zONfP-Yg320My3qg9LB_E(@vb>qBJ3vaKvHE8Xn){o#+~I;|E^2#NohWc*Nn5;dq3W zc*g0^cpc6@VAcqI<^-9Xz(>qiPARlzOdd=a=3_e%wah8KWq67?U!lQ*4!A(Qu*`6o zpN?xxg258Mi0(rJZ3gW?h@Jz&MY?5Y-%s@A?KOJ zMT@;5mxT$3S<(@*7N1GL$r27-PVSWv!;Z~khc(`EN@0n^%up~IEpf!ur)a{dFnJIr zWZ59$Y>8(i93D6R1Yh3mEvfePSH}Pt<=Z6=T$|y@87&(jisEG>!f%$COv5FPJ%;V@ z?WkZoBt9wOCrGT}NewFS@$^KS9{?XMz8jh+e1tYZ6TE0IsKIW(*HhXCM-7_o{3yND zGvV|Hu5#-XYXw4bbzkin{kmo&!ftA|HoEU?yp_u!?dU9^FT9qW=2RC2T zU&0yOFdM4g)#^YJE-$D+0qEOx#sIoH(8W8iU%~lL4?OSnci;SBNWRGh^e_d%1~8P| zXOj|2wGD3RyFEpL*&c~OG!k>JBN{mJ93Pk&u_BCpu~d<(mMj;|t>HstmMv5@QE^K) zD-SEhDn_METi%2$0J&?ZJ<2RjaJ!rxsqNh?{roIDa(v58Y@k=yTAgprW~*y<>jv<{ zZBEq-jvUuTV(2C#$0y>*3k&d1F9Ty4`pF@Qu~&eu7`ZM6I`+vtNL?}dU6!|B)F45( zc^bE?)pc05RZ6(vXU?*3%z$rs1$ncwpxWyisCT+FOP_!L{gPn1m=Jmw5y*JsxA_f6 z*Nk0_vfD4tXScECQhK{eiPi~{^~=+XqV)FRA^b1QSn9K($OvfEU4`;Gc@r~oUmk?;<@ z%Qwcs-#=Pe`H7DREw$RI>RWg^ufw0M^XK#F-1MK*!z}S%m{U^ALe}`i5}a~?EZa*! z&Y29oM+VCW7q2rH)SGn2=+D%y+0;5u>RL8FOh0Qp>FdjH5ykaJ1MYE9b9eF=fe^*x zoijJWd<(C(>MHF2&+N>{>*IjLKB8f~=ZRo^X}q4UhfwTb3_d%u=J?61P!To-`j#R|!q6&Jh1tW3St%D5 zKT{_j7e=rumMoOupj!(gJjow_zWRX2AINirZ6~6yJhSYt>7@u0j~=2Ig5faljFZT> z0ytaR>18+>qWGttcqFO1wFN#LzjU>eL3+vY!z3p8bI-Nm;`z!XF?=KbW#i!nEX+MC z@H{w*A8bVVqZu*5r3V{}=cfl7Hi{7y-LGBQfIr8hp8?uUAEV&>$fXPIosGMI3V;0J zu0XSh;(LpZ`^Q>~K?0rl)d$Y}-F$QyIevWaZX@vV-TPM{(8cg9ZGFf~8xx957-Qs_ zmHmBL7&;M&T|B{X*k9%R$x{78tW#gb#W46@N6rM>%(_Wm??g5Qd?D8sVZv%l#VUQ& zTSQBV!-q~t317}~Yy!nxEtN&6^|c_0^F>d;eBXm9!CStPNR=cJu}Y??7uB*#ywCTzir6`>@^8C2R8SlJ2ok#AvIdBXnyAUw%^xfK8a D6FB>N literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_0xe07660d4ef5ef0a4815e084218fc7a84.json b/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_0xe07660d4ef5ef0a4815e084218fc7a84.json new file mode 100644 index 00000000..84a15384 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_0xe07660d4ef5ef0a4815e084218fc7a84.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "017" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ba67ebb1caaf381e5f8944c1e85e72a1de2f4a2e GIT binary patch literal 589 zcmV-T00Mc`yxR+*8^UZdX{RPLVP;aqQt$zK86VSk@J!m&{UL7G=}_o2=jZzZhtr=g ze*M09)}3u@?_L)T%M|4-l}fZ^xPEYr>TDlw4b0!9|7D z-`6=@90#tXo?6$+a_+$oxB1-SOcG@Qbb%?;-zAsQN)qqtR!L~+8=ClrN8j*N-^kE6 zGVzU$zR{_^v7v8l;u{}*Qw17O~aFs=F{+Gr1>;Fio7#{ zia)l-;BS@4cU^KYyT7vZrt13jN3X5XwHmo-KUtT!l*C0#*q21?f8Cv?Qw6%@a|+ag zGG$vc&Il~ocK7novE4nN1RvVnMX%HDKKV;t5r0(@fU6syVNuJJ*My}ttw~84k-kp% bxu6TmaOvlA0$rlmZyWCqRO{YO_y_<1aFixS literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..139fb843c80596ecbd3d5c3260ee536e658d7236 GIT binary patch literal 1536 zcmV+b2LJgViwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)=O@^q!+Zqum{0? zh`ptM zimd5eqo_pj@O_R>YZ#ARwkgWQaDm zj)R5(DPcU#w3^nt5(}Tk#3uA3@P`v>w-Tz;Sm>DbNuT;d;D~kc@nC=}lg1gY2EKfc zgeda9Cm|6dAVxKl>0@vV=(8#!;~acYipoQR+)6eTA!=m zK@3JzKm&pVW7?neuGqOW%SmwZuoHXIVf+f^rnE?j;5ai{F_vV@2H?56$?Hi+xT;AeCA2>HO|XhRcq7VFa9V|CrQnrc~l)LUp2=%%n{x z;&v+Hn5fvSSdd9-Wt7jgQ7{Liu#c4=kbTOq!cSVBQIT1>DR`MB%a;CCj_nAgNF1SDqlah;+}!1R+5swVX#d%C&;^)u@iW^)ZPxr-sBH zygq80N}A<6LD3H%{P5(t8U4U(5j?fHR<2f~np+BcT2A%SXy7ZPk7_S;t#JyxdfVNt z39dlb5OhEpH_uooRqOTK=f{S$XXM+Sg>QSpw|!o|of-LdX5rhJ@a>$JZ+Aw%-C6i{ zCw#mA&38P;^pu3RkmI&Fuj-5kaPUY{K7hKn)$mmtg5Nj069fDQhb1XA=> zx?bB79Pp4u8&qXPm+ZA3qOlp%De`a5Ve6YFyoqKFoi&Y{f$}g*r`tpeN{E)|_SD$n z5rPhG!|k~3BJ1ZXY`}#C0tY^%)=0h0ua-vN-quvnE9y}gMUY>sEcfJlKL4z`!O?ua z^f9W~$uF5W^jOi$9V{weCIg|zSBKxQS+cav9n&n6+ERDVQ|ejw!zQWb5O0YD%Ws~( zW-g+cmd3+cV0FlS9M8>d>}|ee`jp5dTF;$)5e>Jr<{KL;$E=qkcX6+feTEk=6PEQ8rnPa`Z}WM)k0oT#FP?n+_n+qXSH3{FEz)pZ zvR5p$%f{Y2;62>f@PaOc>kxXhyV+U?Z?oHOZHE3sy4ghsZsYL|S5327!YE>IiYSNx m{|}?Vn*y)~4iI42_$q~UUADR{zI&PV-G2em0CcYE4*&o@r3Typ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_report/report.rst new file mode 100644 index 00000000..9c0926b5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_017/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a056 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 017 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 017 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012476 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_017/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_017/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_017/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..46434112896af6b46c409a563fff9c8fbf8c1234 GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIJT2%CuuSnj?z|ADgq=xkv3H&rbUY8m|rG9TaKi`fWVT3gs)%$l2YPM z`F9JsFI`B8YcHXrFA9GHIeW3>7A=vA~4t|}wsVZ*Vb>Z7HZyIYB$ zC|tYjI`9qC@Xxrhr@Agoj>6Ubz}9@?Q_^?_ZFw^h%@isK?%aSa!lhK(>^>f46mdXA>}L(d5YLuJZ@S8&ifL7J}^x{}Ej zc+Eqqj}#0s1JeL9df=%snd;X+{9{@9@BQ^~1=+exIEB9#GJ=@S3h8W4&O9uN+r?~- zD~Q{|Lop&|Bg2E4gzF9INu^$o!draLuzASm5b`KhB&pVFDveUJRIPNP@N3i2RFe;E zV^Vy?`~bh82saC7k=`;ZQUVt>mbi62h?@3LP_gYQ4 z(*hQ^je+fWNDo}d_uYeXRcTb3U8UWr?AH#W@Ft8}C=IJ8v!vQLl_*@!W-=Ml(~{(7 zsR2E|b^TsCBMKr6WI4k#u*&rz)V*rABFXzT>50$L9-~hxr13iq1U49`KkXXk}ljzW_gwXfX2lX?FV9jFSkzV}qF8 zK4`Scwf$P9BLTrjhP7+-09UMo zKF5FSr$tUA4VWywl;ldItW*vvdrG?ooNi==Z6Qw0}r zvDCmHa`jrNwJ${BeR^d&09u_2y)>)Uazm+?npLP3xOKV`*Om9v58%Q-X_19r%E@Y1 zs&pQ7mF7 z?%yuzbI{YLLpzylQDd;<#W+i_HFaCq$z_W;*qwpFu9(@$iA7B%A^dUN6p9Xj90Aym zEptUQiKh$2FF9ZJVw@#-aGqe*(-?e0ZB%Mw4poZJa||9b*rGJ@Fv2H0m3fg|dsZ)((jWH9|KralK| z0(A-}8jUm=>j^$%m}$&vk=19iFk&!Gx~gikZ4z*hz`n`!TRD|tLuau;8>ftsD>9fm zat4D0d(?caju;c#@3;X@8rYpAc!J&jyzy7qd3PRWieG*)2Ouj?6YQ8e#hx)p8m{X3 zNy9@Y3C3eL!M;VY?w$_Px`F-09yUOr^%pHjhmFPyZFT}|TI?`17dS#2t0OdP&!oX# zx6`RKWkwoQoAIOcW=DaiKWLSE7o;l)lJ}n1I&!yES1QftQTXWv0}p|Q)q|-z23xtJ zJO|YiYn$alCIkB5?u*h(cm|i1a!qR2OCS<%&7?pY43ACiWPNf3TzUCcoz{gsLmyu@~HYhU;>KWO*m=_9~ zAY_$?{RgU&)6{~ZW*-Vl{y{!lK&rT{3)_$d5O?KThbW5$Z5OMfT5~T7Ke?=q3|lh; z9pu&fjn+3xwb54EB^mVL4r6LL=Z0yjylVyn!^Zr;a?|jioCt;jjN>!xBP$Il0XYzX??023T0;Rj-K`VNKh@D6GBpWj zgjS;sv+i!N#kdKjat{{N=+!`6BtqItx{QO*7oHZs9L$wBpHQd zzLS}qKsw!~T!U4`HF58vuqD!*6zuwiu!l#%qoZMJV;|{`r>4ZhX6oq0@gGug6~(UZ zU#g<`Wbn9Ktu^;sWu@Dx1C2ioec#1Jo(HKy%BJt=TtD^+(Z~UjBlQk$SDu#P@IX!) z%fvCCVF~h5dX?0A!Onasn zP6UwMYGtomE#fJ7dNe!>KQ2G+ zO37YCaH(8|a~#y%=kXf>SM`UxmrjK7Exg<))!_dBIIcA8I*!R(s$nw6xjPVXdR(6# zR#&IDYV{kqMHRU3e&T}hhI{4@;i(jat3wC-wn~<9#Vdm0&Eaae>O!%DGuU>7x?u;C zbe`Mh$h(wGhU;r$ftx(YEBRb{_A@s8VR`^pMH4s?9&{_Nheq)mpfBFy4G`qnL%QLS zS3Q&Hhw!F{utgrC?>hZ{Jm?3WtvT>)X@8~Kdc`9M53;Z)t;}C{HG^Jw)3DvZ z$MNf)_xrPVSPJ&N=-_;HX-P-@)Z*JErEi#MWA*}SE2XQxssP2!;_VdteKE66Wy`7A zgcO;OnhqNl*&YD9~hq zW#gnTpWEDIJ&?!4VdfYd9j<-%>dWt5CB)~&2_BAPtM!=F`terk@(^*ge!Q82xg=x? zsLdm$Ams6-klCw43Ri~|t`kzYI;41YNbx!$#j8W+t`3>|KSGlFxL!3755G_~5La(Y z`WLE(pB?i0)$p@JUcVZCGUP%9`p!>nW8}*c{&Q@cEnnQS$W9geoBxq*YyHSy-%3p@ zYhN`n+DZ*!zeL`&wOCDWOCUD>B?-8mVf!0vWyeOa$%0Oqc?7wWA-ZLCPKTVF-{SKb zG3Ut}kNB9cV^DJiF~@`0TX6zERz2ZoSA8~gkwy-YhngP6FDIQk#!qnCp=_STSG*2asLCG2tACs8~^}ajE{5x literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_018/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_018/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5d486a60efea9134782c1230dee1a3049f7e666e GIT binary patch literal 305 zcmV-10nYv(iwFpS%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ ztD>TK^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFE~}PX=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>iJy^r@L=sc$f^-mcMgF1!k_U=eJkaICj+^z-v4^_W=L^ Dyxy9$ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_018/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_018/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a0b7ab717480aa04577382506061fd39b783c907 GIT binary patch literal 1293 zcmV+o1@ihIiwFpS%z9-4|6guzWMwXJYixQhbZu||rB>Z<95oOpv}wMYH2qME5D%yD zl1O3iBgfqZgis|^R8hi1Q6H!(%ey;!cFt=rw)ZY6sst|;mHdWzfIo(J{wv12dmltX zio`~`U3=`A-^~1GCO_Z&oo&5WJ?_Y zYJj9%d$$&OcPmjc4JOW<1s9MYASElzyNL!A5)B3FK@e7#!Ca!LVQHBcwcj8A+gw{xT^OPY zkYt_~OvMhvOC$%&6vlDO@*Iq%dEwoIa}}dUk{bpo2?AB3wY5+2(gdI&To$D@OMmx; zN~j=}!h}IGSwOp&Q(FjS1&>KglL<()b>s1PjF~A!iP^x9X9$QQ?nfGOH3bs5vIrlC z6+<63CrT+H0b{7XB#5m>)0li{ag$M<5_EJzQfjHekA?gJuEqiapMa(W0SX!~r2ADY zLplit4}~ZxCgQbs_l;ErQ4%AgjV0B&C9*404Z4&|>Ali~tO;s4qA#drD^5L{UoGWC zs+lBH&?cmO8Q+=an093O6eN|&3f1lwRAUJtJCRKxXv;v{FO(3(h>)?g)U=|JTk9cV zE~Z(Go?nm|<>=x2-A-Up$lTI+t)+C^xsp62qA8pWgb)izSKt|>O$eBVA4`x4GJdU# ztT$zzhYZo8sPaD7xL$MQ4U)gAt0~2T+UWK=rvoelgC@zM-n=_#I?7_pM4?2vy^Ll$ zs17b~J}G5VIk@O8w;GnRAKcx!^l8|7UO=)ub~|fi#8~9uUnyiQ%-vz45WGx}TN+F$ ztO>C_ZkaMZM_L}Y0%2l(~LPj3#Qnp203;AnoT zxfBJ%FRy9&Reig_#Mr}wuaty?qiu|1bKSdduh9lpHrvZh3p6K#7cY8I#pb5v?X2MO z?)i1J2dwSpT02FKP9a@tC!u$@mnPbXzHt+qM5jB#yw1J#?(=IKM6P0Ep`x9dPNzFO z>7(L%gjkJaH*O``&>1mjDO`1S;iPUX9C=A z({&ayxBEE7In*`wSrshmHfl;3f97t6(?~W}o}qhghm4h-_t0N)S>vsiXJJ{ZuAF{x z9jE_mMz%>4O`Mbj!`WV$vRl|tbg1LXrn!^}UX@`Yy>r_^W>l%M{Lb7KHXU6xAYAOP zw41u2pzn9C*g@}a*P&~apzE3Y{(rd=Ib!>EBVP`Bw^teEI?9f(rKsDht8l+ zLEripI@4d!*Zz$Dm7WDi>{5~)O()Te2H)cWOexPB*8sv%;1cl`kLoK=QvtF3LQNlO1_JuH9vF$(?;=lCA#ql8pd?AxAmzJN5{h0 zwUO}3LPM}_AUK-uVb%4Jqk5)?EYm?)s16-d^?X-XgR$?1qp_M=BB(eVyh3`QnuaRo zcLi-B2zD5uuO)UgzWCSQp8WIMZ*tKZatwu-6Mb9|3&mW%kjs}8aj#M=S45HD-YxDF zcVi+pF@5Ms%)B8#t~Z-;bW0eRjsT$?LkQ)%EK8lX+N!pzje0MRzOYxj9!s)v*l8=h4p?#9 z967F!jL?Hn-#w`{)KH(sI_q8&$fWT>q6mB*^wIeZdF zzYt(%g%BfODDQ}SorN~K)~-LdWkkibKE$3yZfvbNAE3X z6ByF$G*YM6Y2^nbZi^|L4@HN#$F?fZyU=%Ss-0Py1L=C>snV1lK?qZ~%t5&%d>!P9 ze32BOv;16E>aChuKdB$8T?uTukuPi)%EVa`zfMn5p2yMFrTFo77{Id1oy^D5!eGod zrE2G>5J&IRndt%O^y+kK)*H2!+N`!4kSnli`ZC{Fj&hL3tB*Ux@k=pT@5}YxrJ$@{ zrQ%joR+GGxd_`xl>nAu*u$`*i*)QcQI6Rnx(Lqt%FBL1gMurHcNwH9I0h9>9K_XeIpjpzr zP`@$yv<%M}`57z2=m$&-oggm)PN$!o(e9`0F5pPRNXAQ>``+H*L!7mp880Be(UCW@@H%D2))BGSS_~=!J z@zl$3U{h>(r=y%<;$XRk9U#<)%Mzr*LDQu&+W|H$wi${`HbNO|6ErW+slj2t*Q>V` zh8i^5$x(WT@`QYidoByUi+)gj;hekOTU5hcbY!40Q3+moMP_CkLMW@~h838{*HC z3UZi21qTczu~{XAQfh-)@?o!Dhta+eTz@1aTt`rlZ<`Jg%k0Q>bSpG~UcKAu ze5p2CUA0?PfFJHNqPBZ(T9zhwRyZ;pER1X~2mjJ3E%3+hR+fS}$w}EaEdb>)9))LA3`Nc`8_m1Hr05PrP`TQ=-^BUs? z6yf&KJO{M%NTRKuCV6{rUO(F`xd`q0)KzjYQ zB7s*)PTadlYzZ|d3H#d%!@hVKK72XmHja?t`Wjc<+2me6`|4L*l0}KC_b+8pax-|; zZ%FN|kSF;LYS*6B;POCj8mmMxEGc4q zt*TVjwA#6_X8Ckp@mTYb0NZuoX{Q33ky|uQYb(M;ODud{GtG`vOInj+xDh~f8}-9} zt@;!)Ko1R#{~D}I7RJdx-db6C!zMyft#Tpz=9Z>;_@g!ccs5-b{wrFjCU%FpP^;^j zK3w0=wT~C*4<4ahg zDy+NjnJ~fh&Vn(VN@277Mu)z@TMo8{GPZA7wWaeOIMpbw!kf9py{Xa$$wT?R+L4N z+pr-X9E^;dfP<8=I7`F9X5}`=9hny5?!PItX%?ojE%N!ifXx8qJkYC+5EkYSSoA54 zJS`zXcYVZrXZN=_;yhQ}+uhn+7+FJJg|eEd*qFC&CZhE3cW?On zaa@_d3JQx?LB^wesgQWIYs2@)Pls^YGxlz8i%Tv*DQrnJB!Ot(U+*ODz+xn2aCD4lxZ&Hr8cZT%5!msx}g{k~UJK0*zSC z^=szH?I-AL;A*~+yzTp;7u*KEm~Ct-SweC2wCZqZrX!E6FU}ou0jyi@QdiE^_0We+ zmz$1>`;ht$tS2s8t=!^?pO60%hlA*5lJ7WqE`K*$zpx79=-&n!5(OJ1`(QzDL6(po z9k2>pIs_zrzTe^uEzn3+vbl1cX%ia7(Fms*n@S&W_W|X8|LuLAoI+Z#F>lyhNG+y? z4E*AnBY&0l_F(G>HtyG42i@OOWYjZc@v=sBZKpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zWbJBEa@itN`DpJ#7DIzhZx7hm?GY z3$N*1A&5ls@SN`)exyJCa_NtMu3fN?{({l;BqeT2Qxa1~T*CV1#dttut}pGwJO4ee z{hFWVRlSTDPDrk=`hs9ZkW@6uVw&r96j36u@S~GlfA%}+?AO30anqtdc?&bjQJ6Y$&kbV^6CEG zkGbB+6piIf=QYX{5h3=;tTnhqildOmfNMF#v4r;((+d!Yueg9zuGS--kosXvLM~Jf zKpF!{UxDpvv(tLeZZsN@zUdWQK~ey|oo9ND91|Y^ab_`JDKi!%1wQ~niOhua1(s2e zC25iO-Lv8942x7Eo)U&e3j~X@5y2#s5EXGK<{A`{NQIL$*S8LN4>Dp@MkGLHfM*bG z={`&v5RxLw(oD%ozMC=kag3}(KO+8M4DCjORT^^@(;n(!e?S<-y7;)?hm}d=3|0d^ zz6U@UaNiLm;X{H9YsTfHWGc|-rA5XV@rjgJoFKqfpeaM%R?rz?5g`9S3ozZc#1fK$_S~DwVNQD85KliY%+Qy zlV;UotSF#Qv5KaWx-*)Zu>s>p3=N5pX2~b@JrWd_9rnVIFwFcZs$Ea9fXxK#1U8wX zO$u={<#CK;Y*sAD1hzENOCAvBco_B|^J8>`DP;Ibvtd|dR&El!@RI5EgfnUuqTDzu z0HGI?U<#fD+L(d~@-idL2gWZof%P&=60<@$P3^jmJT4a;IR*0DeKo|ep;nq+<6#H3 zfrOA~yx($NDbJR1mvqe*rRu~z62`Sjd37&izD;m^%6wX~H2PUzAB{dWUC&bDPs}cd zV*pd37xZNi{0Nvad7yQQ_$+;z$cj+x*T!!$9w z)k!f6uyo)r4IDcV3Z6Jzx`q!Ut3ytivEk{VwFyE5OlmrhV3unM>&sykMyn$b+fD_5 z-FtmnH<{FnZv>`6N1N38~*Bz;tQp(?eR;N{oB zL4`9(R0V?eF=gf*b15s`uKRpyinkzMZxOuS7_WC;ysZWCwidzL8slx97jJt(yzNEs zw#Rte|BZJv$BYz!cLC#`Ij^de1?2dVz^qTIjqNss@_C#kOpg0H?OJWxg9|@02aPT` zI;gxp{qptc82E^s;Gt`+wk)Wv?zZ#pka4xutvN8)gmeJfD53))yYGZ-&JXF$59uuu z(wiT$H9ur)k&vzVA=~pqw*N;+!;i(-U_5*zHW*ju1^toO@WCM$XTt}FT$~N>4S9xv zprGG#j9Gd5l{Iee&K_Cjq_X}-k2$usUZ|~Yr(o8e5h~kG1m`6YMe8h^&I`aAe@p-= z=qgpM>~conkOdi3dIXi+Xg&a8GlG-rZ_Xj>>&CneVhxlvj_ZMJG@3iDb{!-rLP~(z zlOu(P5Gc5g+j6};>*-C}XIv0Oj(w6^A@x>YE`+|lt;xKbSEDeBh`v%v?s30fc~;)w zuwE&2jLi4-C1VE~D|)#PN$CyL=W29y_zju`O55Bw&BCco_24|I&buGhQCUN{B_b$d zefFBU24Y$m4Qm6-6XwHwW^Q9|^|~38JQE;2_w^bGZehhYG&ZNCb|I!A^=mW1pahqT zs+CSa$<&Sfm}B7-g(%$@9p4@*L>LMc%I+#Tb-~OG#@nX?~q>5#-PBhJ>22SGMgogBKjte of{4KXFzUa_3FN>C3BYW0m4dvMEpPMhcCw!PFC8OHe(DbZ09mW=^#A|> literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_018/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_018/create_stimuli/_report/report.rst new file mode 100644 index 00000000..59ff0d36 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_018/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a027 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 018 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 018 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012447 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_018/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_018/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_018/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e5a5ff00eadeb5715cf9b1fd3f1f88a1b34b07da GIT binary patch literal 2845 zcmV+&3*z)2iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grDgq=xkuqH+rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`!h567xZ7BA}O@7{a%;$m?Y_{Z|Ue*APP`HMbtOz+e~ zoaqF}A80zlTwlY8!=dN7eh^1@rSp+4!l4z!Kg1jVj9NfP0AViL34 z`^|P$+LLNs83;Zy?H#ipl7&@k@>8YVQRjIE9?8OBfwiinv?1Yl62HWoqd9IIz1?|H zjidJ#OA3fI+V$C@S83;mByZ=Ja2|?=xW|qvFFP=IWul#0ngca^a?Io_%=q z<=+PQ%cO%mOrawK3MJvJ5DT`Q?t{(+ztw~P4_(!?!8*n%v8xT{KCqAV7)U80Vp)@~eqd|4ftj&6kp z$g6jo?XT5(v!iw@3h2X!jH&IOnU?{lgnq?u7 zV;{~IDc6)vSp_uV^wD?@y8kU$(R;K6q?QEYe05d<1rUMnK2ubwse+vDHHhY)>F5ubnuIe# zyV-$Rch}is+<;QK2McQU8VV@!M(tUTxL#JeJ@E4}jHr!vrK+~1Jw*altJGQ~qmazE za`O{Nx7Si6SXELJ_bv)sBF#y`-oFs`;4pl2ILfT=A;a~xj9A*p9KJaEQzogR#MS$k zswg=bJnq${)?T}+_PPzA@t08$c(}~-AXP}&3|xa7Bt9V;IUsVR-ofq4(<&Su$Vp?F zIEGt_kgryhiaP6dF5I)+?7HHS<|7`q>%h}acr+zPX*}yK^J6Vxc-1hij+vKP&kVzf z0J2-J?e?mbXHWrpXlUFwz%IEl_W%9X($Y_CBBa#H7pia0bXJGI+2C)->9y&9%?S0x z?l2d6bzRd(3zy&m0i3o|fL{|#yP^*+9~`_c9Z>I*J4Svgb<}#J{kYPIN2k$8)yF+K z-HQmWRI6}~gPQv+c_ZLy!D#2wi7>f^mzxy{?*EUHO2eM(TD+~97IU1t0}*G(_1R%{ zb#|-PzlK{>h5PPjE*Nimr@;uGN@27*a&h2jWEoeyA{gBqtwyUJ6gxPBZAWOBPB_gL zxh;;oOUdQ9fi9M~>2^^q7P9l7i5ZNtL%1rsz=`mnTk(7}PTl~0{swP=AkRKBOrN~! zna1BoH+_U{@(_L79SoAeAoLyGg=b4Ex&==LKlrIvJS9*w;c1azW7FwUbfZEI$TA-;waie@Y1Am{-tuy&*WqdTx_(Y#GqVQ7vfsYq$x8ScRs#*6WSez`%+BWWDjFjvz+8aGYaF?hT0oaG2OApz zk+-vU7_4nv2tG##2Wzf_QLqLt|B-F${$X%`Gc&8K zJ%Vl}-ffyDUNB;fg`6RfXQT?fG?3p!=)5#&xTzfHbs&FPSn^Ba6V zBj!AL9@5DnvU&=d(9{)QGXrGE&`ZDMt;qB5 vZLR17RSk#u&q~BF5XKb+W%VIKPc77@ ztD>lQ^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFE~}PX=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>iJy^r@L=sc$f^-mcMgF1!k_U=eJkaICj+^+BDPp_W=L^ D%h;Rs literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_019/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_019/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8c1a3e88f5acd935441a8ac3fe1c58d28b943a1d GIT binary patch literal 1292 zcmV+n1@rnJiwFpU%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasv}x{XdQpoI53BH! zNM&|6yWMR-2t`6g6(u|r^#N2_o|!XiXFc{{dv=qeO7Id9$#0kk_%XcmuQ;BWy$}g0 z60_3I*vIzy&N-jI^YiWB*~WX-<35tSxF{ehcmaY-h(M0QOR5x%cehXR?SJ!!zxa3l zz^xKVbMS71W|EUatHira!Z>KE6L#U<2PZQFu}rIS#7OPHyIX{(-tEqJMzr(v*t_+Z z8Xzgx-mOI5-ARCe#SQ)Pvor(&J31DG@LMfzV!@KL6IctbO7tx4X8ax-di) zAjzyOSc)x%n@A3pDa_-B!feC|TJco8ar?wEv3LcY~CS#E3>(Q4%wwjV0B(1+r^a4Z4&I>;2M%stIa2qA#drOF=!JZ7t9E2SaxLj1SFNo64mY%RO1ywb|RZX(iVw$P$(gY5usvfscA(cw{nDp zIiF-PMt)AFlw*YNcRPVap>hl7^(m#>%$4M!5Y5F|LkO{ebP1k8+JuB@_^||;AmdlM z$a+)ed8iOAimL9j6IW}FyhHL=_i94%LalX=I>!UN1_oV{`F-<@O?) z>Tq-jdHs1QlPbWuw%lo0%D#8^X4V&B>Qw>BV%c`q*od*n!M{?-T3EY-L?L*YK51z% zrLZRC_DRc>@fp(cNh{DQOdWo@*}{kC;YJ2?kRoJeHQTKIytR*CpZxT0KdL!(&=?M9 ztC~$waQwp!J-?}U7g!j3u>Yl!uz$FTd2F_O_stDtU}>_wn6yB1GI;&^D5}`pNZ!^G z9`9b=8$k7R;i_=Na?)Jh(8__pmqDXYQLCt5;diU9l9U@mzSg2^Hrqk&T zdwo3kJ|R{k+0BgLgdl+jQ7=03W$gC&NGc5k&J!pq9$mTZTIZ@3W&9g|z%s_z857`k z8r7NG+|EggeW+{f%PLvat<{t;{?y$LtC4K1JjL+b78xl!)6idWSmUjRr(swhT?PI6 zCPDvKk8G1Bo7gD{rn9}&Wj9bzbhyWrPjev?+$uvyx^kPrW>l&1`klHB6dhd&5Dxa1 zy%dI&rZ50h(%ou3cFCrGHA_aWl^*ruq|+M?DK#J$ix*Mi>mCF>){nzJZ9Q_0My6>iQ2><|! Co__@Z literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_019/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_019/afni_proc/_report/report.rst new file mode 100644 index 00000000..e766714d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_019/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a059 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 019 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 019 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072389 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_019/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_019/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_019/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..597ef697d6f24c7480d28901e4bb37bbf004b0f0 GIT binary patch literal 2544 zcmVb!>EBVPbH(@Bh793KnQ$O=OkoTck~iEqc$$PZb%7A1a+J(P`C(#wyaW6Wl|WKW$e-51A! zhs4(|8iIEN(YKjs0BN$2DysSS~G%ZW7iUaJ6kjgQnP*-$a?X=BSy4W^!>-GZtQm2My~^2T*D(j zh>(+nkm?%;ji%XB+I_RzQ})z@EWHA~9x6cebd;{XP_lHjC`l5PbabO#Z-M0FFdh^j z)Dmt?vpJ2T!fVs z6M`bKQkAwURq+TNN7x^UgeGWhPuHG-9Y{1NMdCa=L*nL1gx@KqYS#{0orb!nDm@(> ze2BdrJVvX&HJ*22?Ap{ib}b*u_3~3gQy)PJ=V9SNr7V6M7fM2jHej&+ zTsM?f!&DBGU9+o#PnV1Grd*-H()@LLs_{Ha?_bED;3Y9^tHQxzE-Q)0f~M9xdvccE zVk^@F(CH~`Y1W&KmZ{a-O{f*vHGN&^8+(NZu<(yNH1G>KS?}vg??O^m-(=#drki

e<16uB@y?WJjtwctY2K7;0e~_EB+fO5-?n4@)H~~yhILzoWpL!VIDHm z+>9rX3pP8~7@Wu)W;$oF%nfFKp}`VIp|`}ZxfD-1j5tg<9C6s=3gC zmpv{aw#8hVV&)o|GVE{|5r<7X!NWyqLM-8k!-zFJzQ;S$HR8q(yl{!bfyeNO!y&`* z$XenVr$6I$IQxKEBlMXQWO4?dFkd;P(4H}QFkzUF?M&1%r*y>d6mh;ng9ROMfqG$? z;W9rR*O&x@CH^*ELOIALanuFdo(n3MCE*&Mk`=rB05*-W#kv&6@o zXEqlt@`hX%CLCr-w=8?{nFO3H;n3yeUfE(8J3Pj$al|QwB@Qz~!DzI^5mTR96HbN6 zgD@e>1_@_NJR{-owDCvy@@{WQwXeQB1;8kemN;-7h9f*$HbN_kmyHO$UScv0mpJwq zcEY1k!NDXxE8!Lhbw47!G5?gQ(|xy@=-l7JuF zcvgQ7XK=%8sCrkc14+2LpaKP;Z`T4Bm>IDngnY47k*l^W7tO8V1IsMiR@JnM zTe4YsP$^cCRoZmqO~?X}yN24M%;F5U%h{3I-p$faFR~--+iv0jz51Zld0{qNU9(#^ zfFEvis$Ot{UDpyrHyL4{h$Am7z(2hVjAiI2$0SBx0lH$#brI09+w&lG#prig-hNSo z1l{6k+^$yFVcAwG;ewwz%l>c%e9J4yo0SFCUe`dq)1_JZ^t}r(Ve)eW|8{00Wx2u$BogrDjJijPPZyzoKkkeXGC_aF7UgM&GCfq)>ec=7? zK|~+25>VSJkn{C<1(bmVe(=;V)s_i#y01~rKj+aOaWx5dgifmqqi)>gi}4g{bnHxOtw~ zQff{M_IKx|eR-HXJREP_-9t_gSsSJ5y^X_XuYSFeS5a>2)`cp{Zw8P0O|`w(X_)<< z25$Uz9LFK4i6T%HS~kPL5r(-PFq1i~VzZ zR+z6V8Cww&;d32_){%&2^cGF#(waE2au46u&8lN=WiFXxxDh~ho62s#QGW^*U?+|x zd<)*?8{^=|_f}SZ;v+&!t#+>Z7M{-Q@Mr7%`Fwg~`rpvQEb(8Mb5h&3?D3f;IOhOa zwwHjsVKVD2GFU#icwM-l-k>{1f1-BHrq+2>*Rt_(`bpzaUtfNUD6TgeaF2tU`yzi4 z2(5U$bKypqZ{gKeU4{MsNnU9r3<6j5EbMaEx$7|F{JK8Btgg?uYV!qbQ4{vv|5-2* zhsW_4PNgJW9|t7%EgHsKo(RTQ#_Q>N2*nP@;IkuZ*iUAKim)lrw-iYdhIXkc%pO$C zO1ZH3nc{d{7{RL8vQUD9ZY_+^B!B$*@*N(3AkPtUa715uX4zlUD-j|dJwz`B!(rYT zCy{RlaJID5t8g+z@lQSRNY$+pTx{1)U%J}KAiaY9Fo{Y2-1EV3@qA^H7`_qzcF=GG z7Ur%Ucpevil0e{$|p8?uUAEV&>$fXPIosBzy z3V-TSQBV!@EvM317}~90J8$EtN&6^|c_0^F>cTf7^p;h-`X>HjZISVB3f+93w{u zDSN}bUUz(K7D=q-IccXKnPyBC$>~$730v@TMJNe!29KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z+bOkaPIUl|TNue#t)i3r5qEl(;EPNlY1W3G0~`;{lPmzH$KX{P(=} zYkrzn^&(<8A-P`n1;L6Ssc4eLG}o&rqC{ZfM<==d>~Y8_N(J|kiUiMk5h|kO`ZA(H zu5X>4?&8LS-CQqwSP~Rak?RFF*Pr^Fg|uhmF2%eDu!_d|kc)m8^C61KfW!du>B0Vw zxn9c@jpa<|b;=YGA@<3vHMm5IqmagcYca&Jg!eVm3lNB}xPVmF>k&^#{U|0O7s>;W z#z4|nV7uJhZa?fa8VyL_^a`#ZDFENeGrdBNi4TA{vzV`y84Hqv9{{05X2SUb%P7c_ zw8;D3*>H7+MJf?b2}7d=f<;-2U=m7*iZ~Q=1&T36L4!8AMxn z0F(NJq=>RKQ*x5;M$CO2BkRzQh~FPWyP05>#$3hJLmu|~gh8y!k9$2>nKaH|HQ?iW z0E7YeT|p8)Ajq(0Ts}&s0)1XuWQ-A?NQuP>0&E4EGUOcvoe>rRf<*f$zzR$F7?0nE zRxc)oR0IbI0LIuGk8apnn&m`LJQ#$Lv>(3$x=F=T#2HjZNQJE31li1}AR=Rv(VLkx zs}^HL0ey;9G?mod(bSCf86PqD7cYY8Im0I7o4MUHf{~f#+Un?KJnCa)M(fIK?nc%x-m3 z%mOSO_)7!F4upay4wtUs!^rB0Q)X;a5CM~#&Lf!RTEhBrP=(Rz2*j3C0buuE zpVmz#_2L@=>HGJ8c=FuLzTapfIJKCPu9Aa_TM&DaPWe%*!6!){RbHq{Z6nnmbivVK z<@M>8uTRIoN8|(#U2C;zL2Y)ooOg$etIclBfw?B61JFhh9SGTdCuH;dkgfAWw&n@h zIzMFl{E+Q=LblHj**QOC=YNDW{Fsjo#=}QqgK>3H&>x8n9~^RiHhgf%`PuN^kY^YO z3i>_An3bnrS>xv3?2%RdaJJ%Lf_ujWZuoIQ5Z!;Un?c|xL+?lD{pXE zFBLjQ<_G$Uu>*}2y*z-V^cw1MHM%odWi1Xqiy zl}Oghfx9_8r(OXh`AWWy~@!p-LHb{Z=o*eJnveFMsmw-+!9tFTISIP10ap zwO1^V%SPTiB*Y!!`#Wtv0PVcv?cnCF?}rcl?M~D4cR}Z`TYI>}m1Q\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_019/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_019/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..da92dbdd198180165bf5946c5bf6585434f22aca GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grDgq=3krq|OrbUXzm?CKcwB<+|3y$e#em1ykY+1@oKcJj*yQ{*NN+o7G~~l zrGDaQ<+AHAFfB7U<;K3|c`!MSmUlx(4~UcR<7mkboxrqFJY0xwJcfZGjrO)aHsa`j zAG$W;k1f;(c0JzFd=IOxhaA;2J!F{8x7`Y@Aly&*rTH5zeri|?5Z5BVHI9_5-WORc85S7}!2wN4y8v|L@Y z_|P#YlCztd{8I!djx2RQIUq`Q{u$I&}aBw5*M zHI+^aSll)Tj_V^M^dR4N_p5bvuh#6U?M`i1+K;1~FlwVLte(u0rLSsnw3yH3a-^pv zE6vIt^!(Nfdf8k-D8N9TGkp_lTpvQ+t9NU%vMb3?)K*t%ca=E0afl9bb{yT2p|jFe zo~Uwb=V=^$%ERU5LyUaBSjue{OZ*8s^-X8MW0IhyUAgfB{6M0?$mgfo>0>KNBK(d` zVs?9fuT_ z_h+%RFc@+TsnXgN;^=*PWjX*_of^F~%k}D>+Nd<^P%CijbY-rq>}DUpg@4i_3%`_; z<*r=oTuRE~>s;Jw$ZArTa=icFn+pp*-p-W`b32#cDu`vvNkFk|54Ur zjNPPvqimdmo-rNT%H_*CgIzztd4lb!+tQYpFXM1~1_s-O+?H4<>lz6WjFYBNb^(Y4 z;2^OS%V?5J7s_97f#xSTPw?O@#hR}(_?X&g)W#ZW6rYI<9x~XbMu9~q2NMRLxfGXZ z|C#AgoFaolhOp%`n1$3e6Y&gkL8CK`-kHE)YBP@oW-{f4dMWljJH^LLipLB_48{!h z8LTl&fhP&&@6u)Io=F=__Lzj|8l^TiDK$K%*kCZi1`Rth`?J!7wRi&tBigXp5qoZE zz|8O2UW&b*P4R%i9>u{xOYwxUpRhKJf55ciIg|t*&EYf3l`-=43GH`B6tioaTeZL# zolrbR3|DB-MZ3&GZBL|FWWzCyk=sl0*Fg%MkcnnftYNx--)7*5y6IawwI7*GKZ~i) zft5mo!ii2JO~yuwPZ?%9vsz^LnJkPLOp~r@`fQs79Hy{uG5xlvQEVD4HfiI8G4cuw zrjFdfAjLj4A8RAVg!a2$h|>o4CMlj^uYcb7E9|^mo4N8ApPvJel_x27ErVj;9Hb3T z^MkbEqvI6gv6te&rr7XK23fnzd)r zV5i&Z)S3z-4eHJ0QF^nZ!qXqL%DoHH6$HsU&!vvitu)kH^LZS7a>2kypka-0s*b@{ zsj1IF^(5M6v6Rb!KDhg$@)DlGRkbR~?M4Me!mXJU$bx*kLlr<<2D$jz;Q>7V$pg+jKygVNlP=;R{8f zqzgh`-RwWmR8iMTs+Qjr)Z&9;zJ#>Gh9PV~7C_upr4CURbJ{LZM^bYqjy}Guj!Z|l zLIdR0yL+v#)cRgqZC4b~hg*!P?Vg#IrSYB>4onC01KZ2Oe{v!i3NVgOae(YB3vjTd<<{XbDJ73B>vGv;ssBf$u(3RB2BIIo)j#%|F%AA22lu zXN1;X8)n^IWs7kQO649bXs_E)K#4bM&$`6*qSEPtpO0ZgZL}&?wJGf?5~y0G)+8B) zWWJS~oj^L>rXsh`P73z^g|G*Q;iJQ0W_1@CuCHYZrM1lAi=#hek}67E zy??2Sl9R#XZe42bwyJ8k(*PQO8U}%f%RCQKg_KR-HMoA_6QYp=B1h^S+%7$>!r_6O zG!}_txTOgBYDKB2({AU&J6LOTs)7~;a(h`PO4b$qFdYSf2 zF`Nh>yY<>mw_14y6`+TP#(fR!k{e_HUvDie{KzIkO09gM`esb0b@;0d{(78VoBr2~ zP*3a*bD>w)HGMdD2`&)8X*&h@HNmti`rz`x!Ryii^)9(%8sZj&pY);`F#a zJ*+NIZ`Jx&aEq#N-~Ge|<4x~07{XI2jFyKk4jhdv3Cs) zlh-}(_Gj;~R2=y6{@L=vf`R&(`L|1I-?Y%`>;=?%#?S&y1&V9s+Zp)#d}f`=S2ME- z88RU=9X4&UMPxj3#>W}>=NXw~pzphO#>E_|hI6Z9*K~-D>m4UHMqh<8$!E4<7HBHX zP<1?7h0)b>66={2AeQ~+6;D>ePq7+k_$0emSIF#aF0Y~yastc+c(lTiOQ{8PIWw@f z1`v7MD~G|#+J)dVba1fZIv52j5OkoK4*9iQj8~41IE9%aT$8VG9lk=!S9nvtg=_LH zT!(KV|7bmPd5E~Wf3%i?xg=x; zsGUd5K**y@A@f&<6s`^_TqmS(b;!ciAq&?DS-3i+cy&ne{|HIy<9gLVJp4k{KwP~k z>0hWCes;*~SHsT^dHrhm$&hmu7`Q*Rjgc=)_|J)PzIt)XB0E*$@BEK!TlWux`|Fu$ zW$kJfM(dd&?3c)&w&ttpO$j8%za#1KMjUrdzgcwBDZIGStkkK3+5z)o{4>WH$>bV>M0Nyp4DF6Tf literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_020/afni_proc/_0xf15640574a5fa3ee862867dd48258cc4.json b/Afni_proc_through_nipype/_subject_id_020/afni_proc/_0xf15640574a5fa3ee862867dd48258cc4.json new file mode 100644 index 00000000..b1796105 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_020/afni_proc/_0xf15640574a5fa3ee862867dd48258cc4.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "020" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_020/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_020/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..01816ed5189cd11df4e7d6fe87f3d3469034e96b GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zuA-oL^Xf_1%OWA$Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~c+Q`r^`P>xZ$i zx&h~QYTAB6S>IiKZnLV@R#Km*L9yRTrfL8$Cz9X(-Ntg|^XyqG$ckAEXUQJJ3;xg& z@LE7m^((BXHI8TliWqJ{a0Tu_#G~keN^-YY%&V4L=LKv)#BgztCx+K4*N3b)*)Rjk zH^9d0gtm&~5rO;k>CG5U>UkZ*`TpA&9w!5}-(Eq9J}fdd$4C;_W=L^ DK&zZ% literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_020/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_020/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e9a4db4bd4e83c987aaf481fde321cbae480dcb8 GIT binary patch literal 1294 zcmV+p1@ZbHiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}wMYHvLeG5D%yD zl1O3iBbU1rgis|^R8hi1Q6H#^<=veQG zMPg67U3=`A-^~1G=I5KgvyJzv$9*Juab7@F@B##v5P=+pmsBYj?{1#p+yCbGfAJT7 z&#e+kbMS71W|EUatHira!Z>KE6L#+12Tx}LVwqOuh>_ZWcQ*)6y}L8N8PQIE;N5ym z4Um*;?^Yu3ZY4@)d{kLm6KaHD>cyR@(&J31DG@LMfzY0xJp0zWt}>xO@IWh%)`fF z$rI*GAw#q%s=UuMuGSp6K=N00HKABgYu#Sw$pFj1ph+^XH}7_vjxygeQ7BPv&!edh zs)Nhx&q|q84$gbat%jxSdv|XpeIB-67LY8C-Od^rF%~)aR|;7RbGMf$1TWKrmIhM_ zYeH-fTBeLok(LLoK&!B||LJB6AD)Mb4C2s=keStPbNchvE`ELT)5UI7b84>QyhQ*xaoae?`|R2Vk*nBPsA#9A)9DTm z`>6OnAyy;V&5YoLAb|(bVbt?w>~{D_Dh&kA5-2JjUAo(KpQ}cc@o)Sd%NS#)On}>N zy3SnYwx6arhq}hTsDee^T1^S#Pu$IL8p+1W6LimQk&&{q9{MXTYrNI+BrI#ymD8`T zWjbs2+yBxoyf{$h{R?!#IPZS2HMKHM}vOnXxOJm z89f9z9`ud}!!+$5_l}N}q>nwWI*(Jb$zRQqk!z*Bew=g;hr_r#7^K5a(uE-m``MFW z+&_kX?BC&!36|r3$^icv\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_020/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_020/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..57e57e41625ed09dbfbcae60fac203eabde3912e GIT binary patch literal 2543 zcmVb!>EBVP-aPCr697Sqw5e!qT7+nn!G{S@mS2S$0z(ouUd8|Cd8rw8-R{Au;CfB$?X|4VQBPIwSv z!SQ1p4UvV3FhB$gBniVHinH{pdeqayByr>HhwRRuv+uLp>AE?=5pe=PYd&0An7gpF zlcl##n@(cKb>ahI8lfS(b$}OBAO%_yuns%I<_gv zl8BBJ!4Er$Q0_P%InL{aUF~lZrz1-u=?1 zoKdxj6TwL8<~jYbqG?%rK^!=~2&o)H3Ux)-)lS=N)!X%^(#z5ZZeSr-Onhfndnm?U zC<^M1QlM?ID3`0nyE)AJ-`5THcRE_9XDGcE;5bUK6}Ul^rI#M7y0Oz~8@&#AanTw1 zL4@rjgj8SMZ#2!8((aqxp0ca%XX$z9^>6{Ar=xWBg_5PKMM;vVq@x?{dJ80A6?MHBazSqt?laCGq3}R2Bk=xXJ<&p z2L~TI-nKJHXkZORe`0jH<|5DFM;;gis5Dfg0|~#9+ojfg6dkz8hjKml)X>yNkivOb&Y)5j-^GQJP@)YO ztUuQcrPVN%ePze&s^HVPqP!_rXs|SYot|nu&(gc6@+Wvn4BM)(znBXp@mSE*dS@3Z z@;Y0Y9)M0yVN0{#Y_v?R-flvzz^>`*Lf_ae+=GRG+@XP=%E@|PS9+(Cvid#~7c||> z>r&75|8;(4B_i8W&33k>;#R3#bNw7tYTkHTl4_x|U6!^=r5Xux`DV>N0t0*AwIvm6 z7Kei<$3=?0x!LMgxmY8~_5zHyOVU=kRI?DBBA(_=xfTE@Q$XTevs}Zoe7IcuMu<_A z<08eQ!zD(M#o;$h2QeLYj2J#Fb9l^Qk15428ywF#d>AlXW%5HOWO#{e204e_h{HT& zrnwmpAs1|Rt}!^2Im~p9W0@Pw{KA7JjzVvV-*73Oau{=%a5&;H;zEH#g!vz^u&mHw z4K90JLM+5wn>x%jGG*B2FeWyecH#^dr3tZwBMxKM@c16@Sl5UfKk&jO4hJ5?BMyfQ z$0M}FGfscT>u~k~vqtDMC&=U&K4iXfN})Al@?gR+AKS60WlrfW!&A)p3Jn%?zy<1s zWroZAbX;Q+43_v^yo7$j&E_$T2#Y`RI5=TuhOWi*Ck`j)F|#>xm(XT#X0e%OQ+tUI zIL|CDTI>zEEKE4el8%tI_)G#$mT>5Da<7aSc5EIytnrpp3QHVjhJw*(i6f>yMH5bi z$%8N<%LWN&OFSdt@Tl=e`0{Sumula9eFT6}zFp$LwHc0_(XtVuC|))q{AP*CG+g4? zW7rPgjtaIz;^Pv2g2Wmg*PsF)Pmi_v0r1h{yPYJ`qP=Sb%?e85qmZPYy_oy#jQ_$aOK$vCrl~>Wb0tvb_DG z1_`>()3_b2uEVmeQo;p4bC&(d4EUB;kT)v}s=cm(dZ$aXbmP14mITwqgwVT)K*k%t z$!|EiX6$H`-G2Fgb{ktRrMIh;XdNS2zdX4pN^cJ?0+7>MQ7GPnbzbA5fF|5Nv_0Vc zXCR_aSP7_Y70CJeyaLKV0xv%`OtobKo$hOt^Urzor(8|K9ih|e!l3>fTv&4U4PDm{aS>t0%aKZty zY%c+M&t&KWGFU#ic%8bSUZp!mf1-BHrq+2>*Rt_J`bFbWUtfNUD6TgeaF2tUyP3ZT zgeV?wpSls|TX?lqS7HBukyjcCgTNI%h=%cjCxY?$@p`%*La~D}`0U7<<0rF1Mc5SRTZ$wJL#tF3X7?&) zrCeD2Or3aK7{RJovQUD9ZY_-PB!B$*`Xe5HAkPuDoru2j%(B0v=Oau!dWfD4hQquw zP9on5;B0B97vN-w;-7lrDORLX8GJZ;>1ro~^t|JTNlfzRp3B3<^OZ?r_(uH0#={L* znA=w1d2kfp-H7r>Gh%{EcQ+Q#Pj@$L6eB9SQ@gkUe~w2#1GJkyM#1@!OBdSP8@B)z z{_y=Rfo2iKw-+6EjEQNg6AqiNsu$Bw2QE^6YL}3!nE>){{iSLP9(V% F007)?12_Nx literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_020/create_stimuli/_0x87f22be45611d46a5e5253005a5c607a.json b/Afni_proc_through_nipype/_subject_id_020/create_stimuli/_0x87f22be45611d46a5e5253005a5c607a.json new file mode 100644 index 00000000..c02a0aba --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_020/create_stimuli/_0x87f22be45611d46a5e5253005a5c607a.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "020" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_020/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_020/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f18ba2e89aea7e076d3119aa19c540e8c81792db GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tDCpXYL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=|3Fo{_y_<1xr!nj literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_020/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_020/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..29b8f1ab725c15972a7c819e047c165b7b3fdff8 GIT binary patch literal 1536 zcmV+b2LJgViwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~31jl3vgb!yW|p zA@-Ka^0nQDVki)#D7Iw}?ZdFtAZUrQ7)zu|Qclt$!1hwC0N5qS|U$BqrN8!UpEWctB*XFYUoQ|2?n$ znxEuVy^I)6NUpE>f?!3ER5ZzAn(K8GQ6jMLqvKqE`Z#11rGooNMS^F82o+IseG$s^t z8UsmRf$eIe+j`jcJP*=0y@D%93c$DXOs|n6;sYSgEat0a#)72a2S6y1nQ*?qG77RJ zE%Ls1I$WJ$kxIl20LjJc0vWF7hu@rM&=HxsPVn5&rfQ6Kw5!XVbg$AbZ^Od4mf8u0Nw z0K$O#t{@2?5oB01DIX;>fj%oOGRBBcq{QMF0k#578S;*T&IpSDL83zxV1*@oOvZ0R zYY-DdDuM$90At*rjBeUmn&m`LJQ#$LbQr$^x=F=T#2HjZNQJE36xo?kK}5!;qc<~Y zRxQSg0{RrIXeOz<jk5v} z`Y{P+;7Op3DVQKHGs1je{89s0FS8^uD}>Y3uKU>Ia>0=kAiv#LBMcjArP1`h>cTdV z5E4!HTdphR*)r*puGykg9lM9ZxHc)T?q`GXU z!8s!GpI)tAxDb%gIeoU+{auw={{T3-?HEp(TGzf_ci_2KT04y$r<~xJ2~IIg6SG^L z6te(J2maE)u>+ytiNmF9_%OCQ;FK8~o*r16AVk2VhVuw!xt6fL993boItH=rQ~=oh z*C%z8Nxk?+K>FeRAD%onv+sKi1g92L(p7R)aSLKk(#k?Yui=Ty6Dg4$L(n9e_5D=s?KcJ0TnMLpJA!Y%UVA zIX`4;e#q7$AzSl9w&#az|BsM{AB(ZUc=$+cFs{xE`XjO7gF`OPh7S(8I2+y@@)QF> zLBHo1v-0#yYuwm5dt{lD%K95W=GfYLp|-Z2f?2ypsBAkCoR>rtt=hLh`W&LQjT#=H(<4U{#G>w)yV#)DS74iXe0B|z=T zvBErFafTo6Q#e3Dur^;TaggucD4$-I|WqcDnyzFJD|NxxosR^H&S zUMX~p%=h#qV+R^5dbtNl=?ygCYJ7G04Vnc?+uSqF!l_Ml|2(PAyC2q3SwpxbA}C`0 z>@{-@#I!IP)&`cx%!m2R+{WJObu%V;CO~@b=`|4C!isNbY|cpSLQF&I*Utol5?m>& zRyqNdyHVV95EcVz+IL{DphF55FJqSV6RMO^*KhR-+{Y3$=;u$q{rgYz{H0eBvq>7P z>-LHTa@ojx=i!5}+3b^cr`u=*?Jn++PP5bUybkX8UGD(~1#a!(4p)}hEMXMUH+d99 m1pbH7;7v{-2S!K$X5*_A\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_020/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_020/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2b03155fe4d0021125fac65f4fe75e306a9e8ff9 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIJT2%CuuSnj?&grDgq=3Q5IDtrbUXzm?CKcwB<+|3em1ykYx4UQ0-yZCK3;bpAZ~y#cA^D3wbxiNf zL!9XZ$nR-7!dzFwh{K`hxqc8wccs}#8{yCj;_u_Nzs9fP)o58AA|IQs6W1OsOx4{= z^~BN2Wz}I|T4r#@jeO1XU~(KS?}d&Y5GCKo(UKoJfoY?7un^sN3JOa#YXskYzdu^W~mns-ExaYB2EKus={Ip71ITyC+BwRMSv% zLXOvcqynC}i_OHZLl;O|d9$#YAjq`Y@CDdP9Cvt=Hq|7T+};9`ZSWJjzvBmYNN9zuYL-s_i)X(sFgp z;zP$Ammcwf?eUznTg{R-pBKc<{CWbD@z)K5{@rH1*;cCUeZYYqBHguIKaSpcBFV~b zv!S$`;KgmT@3=lPLJ#tN_n=Z!_p6PL+G9uj;%08ExXGWQGv9RjJSGWR+LP-qKo2AugnWLIogTK5B*O2= zBx1J@_L~)HPpY*YobY6Tvhj?8tGz3f9+_$N&g_@$gI zcjRjOQc@OQr{Y#!R+GAv?ZviC1VD<#$;$amoMoIcKrnB3AQI{H@C%n35PpV(BCQKw#7n8*NBN=lr)8s3qT|Q z2Z^LuLgQq*Q2Lw;G(W+4g8Szw)_k48CsanGGS)z&_*`W0fWbBu3M@J~7&G|XrFfI} zpPL@VDKaQz9JYK0vyiH0ES^IysCA~%Jr@{EW#+NKOs0OJZi;=+PVoto;t_)pgE51B z25U?xaFS5}T^g3|nY6)Vk4cEGQP)N$bq$XwHW-YsLCp@$-n29!7O&4>L>o3cV$Tir znfYDYOR?9rDeg1aqd4emDIPQOV^)UI512MQhdP0WbNHP4$_RP-nD)CvirLuaq81pT zQ;J83@f8|0XqO4p_C$(B)*RCqy4@6i9i-3+8EZDh8m964HUo!LP0!M){Lp0jSxj~I ztrQv*j&*8jJTg*z#(1VP(IUIYWMRl)nsiOmr`sgpFoivf>9<9VV$)!;NgJn(kXK+Z zRpj>jDfX%ONEP&+-5{=_uRBBjrXjuZ#tOo+g=v_lN-T6fN^|=17v4mD9|hm z0Ui5b5~N&JIxU*FUzH$1_gNaZTQAG7Y>R|&!Ow(czc&WHWoLzr;*@GH*Fn75B3b(A z+iz2XX(5csg@nU{%xA8Y{Caj9=oX>3i-c&+k*wcbT$F12Ia~xFr=>iX ze+cWm#6$s2xP8>01MhzeB6^ROfYgwHoG(u*Km-!_?lVP|_En(MojT$C6CV9OQ1hQn59Fq? zNEE{(MVzmcm9jeNb}l@#++yt2CbUmiVETczD$?t&WM7NzVks zjR3M+tL}CxyAYt%Zdj*hEOFl`d4@)YC~F{$hi_oKLS!|7%95 zCU%Fp(5vg3KA2mA3l8A4odWzCW7-vcuzYawx^zLkOP(0{snk+y_2%PpJszAzA66cB z7+#Rquxvozx ztILx|we}S}qAEOhKeAxF>74}wIF-U^dEnx}(MT9qydoIf94tr69uzw$gKbBsn@%{+ z7P$?Myi3XDxSn3vwwa0Pta^I^kTH5~(ucYMw1qt)EH2&RCO zg|>s!zM{Cc#%dtP!(r|i6dkU7^Xl_&UZsxDiW4*(CsGd*ryd-yXD$yBRS%BWGBB5z z%z$e%iy1I^e92_~YLmj%CWY&m6s|T|xY}glIwlKOn-s4$DgGZONqtF2DJ<%sueKz!vPA-v^GvI`#uK1c6AVY>;`Xz5k xo_=p@MDMF=Kt%BDQ=$s&^G1;?a6$|u>o(9%IAku&q~BF5XKb+W%VIKPc77@ zyNZJ1&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMZ<95oOpv}wMYHvLeG5D%yD zl1OE5?{d9MKnPVrMHMAH6!igAS>D~*vvXd1vAuUmQ6+e(sN^@y1N6{{AT7iGx_=Y?`-S6`f(pgUS5{;U!fD#=GmM`1Zf~!(aRx zf8f@Mqy>1lMRUnXsa5LTHennz)hWC1?t>?D0kKT0YRpJuz`JXNXWrdf+>B@(_r2Rp zr~#63?cG}B-HlYqoR4d38$yi{OtZK(Q+kpMH6sG1AQ0NK)2H8hw^Laz%%#oSTw2gM zP2uusR7tENITr|NJ*UFpdpGPN1W2vY=*6urQw4O-1msHF1VM%ahQG$Mo4w)D@gR<4 z^gQfpWvRvewSlkP7Mw$hfRwB;@1`11NHmnF2SHd}1#_vUhGkVzHhzEnZ*yHqb!mty zL6Uh|FcmutFOdQ)Qy9lB%L_1;7NvLh&s2gQNp2WqBnVW6*47^5r3pYuxGXDcmj3Pu zl~O@!g(-t{vVeBCptcms3Z9UJrW258>)Mm?7&B9f3bTP9&k+zs+z&MrY6>K9Wf49O zD~3L7PgGJu3dT@(z}%jSrgQ9L|;9er)qJ(sL>}KA|h_T4QzcR=>n7e~iA$XZR>S!>P zuqMRzQO8ut8Pf7mC(tTv9e%pq!G{;2B7-=zB4lR0+n)ZsvyWe&{Pbo&YB+V!3J&L| z+DlO|{KFM3ziMumm>7Go|D}?!f4GftY_EIw%@x|f%4T=DX@M4G`0`~xs@dGOyqy(1 z-o3br_JFn9Uh8Ja(J5q0?IiT>?$SgT(YJ15lZgAsq0PCs-hFmugUD5EEL3ze6UV*L z(Et_SCB$kZyO|T55G3$0I*R(fO57eFOQnIpc?xCCqj&CR)930DW&A6Dz;ede857`k z+pe>ax!orj&Y_;M&+A}Ox6x3-_)~X1oJO*->J;5`J7lcvyodgZ%LZ?~JPpf6b?x-a zt2q5%GqOwCXyT+K7|!m>l-7CmSGNUSu<#+0~u<7W!0pVhA zrQI|Q1%1DL$qssdvk6_R1YOVFcmKI>zcWwhGUO~o*|LTjs{|L{YZj;E`WQfFeJ;bmfg$CL=9`v&~&!L}> zj!$|p$kXg3?LCH3OtaB23;%x9=W$B5`D<7*cAcz0NYeOdG)j8IVK$1>9*kf#$WKPe z;1~vpe~W)iumXQG2KdVu$KNwHdFuf~DgiRoJD+YC=5;PJIQL)QsFLU(C8H$3a|r+d DlYe}q literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_021/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_021/afni_proc/_report/report.rst new file mode 100644 index 00000000..5c660344 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_021/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a002 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 021 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 021 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072532 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_021/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_021/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_021/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5ba11803d8f62dc2ac53b905894fcc1ab8d3ab69 GIT binary patch literal 2545 zcmVb!>EBVP47{6 zJS@L*@d&&d%07xhY6T(ot&oJ+B|fHdW8@Pni~`$=CsB}$C)UCf*`mqt6}DrGI95?9 z$>>B8{BV*8<$koj{^wtljsO0;oo-;?F_}B*uau%vE|io)sbUr%)XUrT(zaAnY89oN zF|{d)U?g+%qVZVO^(?(C4~Z{BDkqRaLp2Po+p*e>PNSvvv-E2>u#qb#KAG1a%CQ&9 zlD4N7SX(YBm0Iau4)gvub%XuAuHNmNYQGIQjuLDKZV+YZ`;Rrl-0ODCeiyvBLdJd& zVJ8V8)z=T3Evv0|23D`H?rVoxdI@?xT!84=C`0>3&C>N!u~=l1u3>f>ZIFBt#=}Cf ztdyanB$0?vB#mII8?AwAnERUX*y;|<-oVV#i!bquqL-!D3=lR3=3~p~?mfxU&t+Iy zIiWa`tF_{TYE6EPk0RoaWy%t?v2WD}F}po$nP>1L4-5iSo0{2$gkQ_;GHX8agDico_pF(vADpfxa76F6 z7C~=v;m0g*Crh}TicfJv>@}bFVC=>W9l6Mda=rM})U`*D!bMnQSgpw4#f7p|W(^o@ zJU2|W-L%w0b+p2K5oC_uKMAEfJcVEfU z5BbXU0d)H+Uz*KUvu){(P77)UcFn+$2IhX@J}ms>E(`ozPBsUI+CP_+^*5QgtQ%Hd zmqvE@pG#|N5#24;9kN?2?UXBZ*Uv$F4IT(=RMBA(?n9G!x`MPnwrtm8$c2+FR4HQ=-V~U0D1<{#al05!1>P(Jn!YVU;TbWzsd#dFa^OD zFqGV9ixEn#18y06eN~0ozLtY%EazNDHgV(;AD9`nBaD5yTvckeqLi!$qx;CJ*r;Zq z(gVe+-mjKw7?rmjWgD^pLH^2XWMKE1VDZ7hEbh7oE z{Dx!b=AO>j?PqUhx3TRqdb`eu)+v(p%d?B3_7C7906DFfq|$v@=M5nWXu|D7KLFl; z0V4W4DBT|AI$h+fNh&Ti3kA+5_(lzaHLZeAS=D+|d2!;Jv4+fw%i&Bjxx06TGz z^c{GYZ;ZpgUszlFiH`^?wfdRrTY9>v!=J75=kw`}>3>5HwJmfn5T(6h-=`f2mgz*v2Y7;ZG1aF2tUyOqBP zgeacup1Tp|TX?6LZG8h<)PjBYe-=z8 z;ZZz+Qz=O|CjpIp#KL&X6T#%tWHa3iq1eF~e0CI__{qFbm9{1JmQpNABfDIa=J%^s zwNhCA%t$;bjA2!5MJmHVw-H8onm_)0@eYqakmm?HBx0{T^XxC_r3h1x9is0Aqfy=& zCy{RlaJF>P%WyJ8@lQPQRJSYlAHdgWN6Y6ci^lMc_?Lr6 zTd**9?7;KjD89E9<&S360+;S>EuWw6Z8<1LOmw$?Wefg@$36qBn>|Ls`H@SP+Phn~ z0Tur6!)=LW5yf|w9d}Q(mV+cV@r!qy`P;?lFd}|@=XNvj@$I`;AkgLTEN#EbOB)x; zTo_~IS=ECBMH-Qa#x9;>IPBjS{K-<|U92--<>fH=UPok#9d6xXuXi$^0=|$N%P?WJ zi%N+->Mf&X#Nk~hWP~qgISz$lu9Yh?)cQt{#QCD9pTF(FG{iPLLz_piC5UZCh{V`2 zK+4}RuQeQ>SS1?kc}_a%N0t>cMSAj-YQYw~Se43>l0l_ift8(NANe+Bl_&iV&kS{y HxfK8apo{z0 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_021/create_stimuli/_0x2035f23ddf2da6815786e483128949d6.json b/Afni_proc_through_nipype/_subject_id_021/create_stimuli/_0x2035f23ddf2da6815786e483128949d6.json new file mode 100644 index 00000000..6a0652c4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_021/create_stimuli/_0x2035f23ddf2da6815786e483128949d6.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "021" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_021/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_021/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b7cf5ca7e9f1cacea548500284e2a4a075c24383 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tDD2vcL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=^$DoNQ%ivZh8u>yRX_OSh<{fhmS9a8co zDZHk2g&-2i!}ERT@FRWr>!m;cy>`Jq`b$RBI;GuK~m8qi)pS`QACNr!jFz~{rTgNQIrbqBNYjr^&(WDpcPZvQpj9-k4!P)uF(0Cs3`h(lpYHGd zlu#AE% zNsGAeo`$P4EK-ShN*Ed~5G=}C1d~ugRKy{fE09DY6;9Gz-#X-7h=@@ckpP(io&nmz zeVEiIBt?{^nUa%uH)8JN7+HsYMEw4k+KmLOH0CO%UDU;XpD@6>__)`Dl}Y0aRs%kM z074je-w`C?1A>fd#_6ME3h0Z{B4dpBL`p1<5pXNml#sU-bVgVN2miD8BNVtpYb6>10tkZ@=1P&g2J-HUKkLDnLj19>nRqnnLwSOCX=*D zB5tNUj**PbiUpa#Rz`XO_Q?9tAnZcqM`(yCMEF^=VN_&RZUSC-$@FT%88r)0Zk#2c z(2YqjMNfikOu__tnGxoL;uo5rdYL7OSs|RJcHKuF7YmJ?fcWjc8erH^OHHrwa2vLP z1V}XAZ@I3NXUn)tx@L<~b?gp>acx3g-piP8100_+mrIpKzv%0u(Wj>CSxWqg*_E&y zgL6dWKfhYOa3LU}bNXzt`@1T$?jdM$%Q2cVxvqV)>cDfiw04@iPC3Cb6P#k0CT6!f zDP{qd4*aEoV+TUP6NgLJ=wW1a$SE^6JUz5FL5M&}P3IBJa;;!}IjF*DbwpyzsQ|Hi zuTSbGl6vutK=l24KR$VGX5VWx5u92~Nmt21#Vv$A38(z1)!>t)k18)zrFI6q{5m+O za3+bW0B8?WX5KNEveN0e&!?t%bMp1(;p>h0dgtZanv-v99=@$H-`08gw&&#Ao`-LH z%(wmjd`EN4NI`fPIPRJAs!CZvjvfijdZgOeY6Fzd<1Arv+_&AX)uuhT@FR23=zybx z%IlM_UZ0GKkHiTcI@W5_lG^NSIqwb`SDT%h19J_e1Jp){4nTI^fo#r(^kzeP^FVsD zAzQN{Tk}A+W<$1TL$*Hx(&%G8H5d<{NDao-c}agFHGDAS{A&1M$obXqUdU4lgbMmS z$CxcozqZEB-LprQIjO9_(PNIS%@=BO%PEw#X9|@qCxY{mh@y2`P3I+GjXx!U6zVEf zt?Y6};E;tfsPqU`a>IinYI#H_*WaF_tgjpMIuvVAS>w1K$VQ|2pw+HJ35t*sQ0>W4 zg@+JSaNBOn_42H%H)xM>K@d6eNootJxB5y^=-blG-tg)P3Ju`yL@7sWJ$e(ekxq~J=C zwbBVxxogEu2Vv2ZrhOas3K~+lcp0;-n^2`pb^TT^!F?=2y>9;GyMO*N&)<3(F&m`e zx@xajP%fMD-tii(`=Qqgg3t@__D=KugPm>C-f1\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_021/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_021/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..348e37185c23b4bcb019f274aab122febba5819d GIT binary patch literal 2846 zcmV+(3*q!1iwFo&%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOLzp z+r|}E8rhPaIChe0C%4IPl(v>q5g-AIvZyLCEmAbbyqN%PIg$ng0!tDSZovX1rNo`~ zsnZVLg1+@P^!N0w|D#Vm3sTsnWI0ZiXzby)yJydB4|cx={=E2)e|@%){6(KTrg!Qg z&U6Cg_ca}1uBTzd;n4G3KZv8d()maS;m``=AL6yY#4qF3XjvU0ADgZd*B&m+)ZI$; z#L>!S)nQ;-W^l@lea-V=avUx1g^nH&B|pT`k{>#OX`^_!5Z!nL14C-4^_CqhmTvw0z#FDSXKlDJXI zi`6G-!mN^@;QV&%2ipGT1~Z4ZkB7+P8@x0xw>ZY zp<_-;5Bb3Mcuv}_W=WgR3x&=6dIFR2R}F*y-B!KTQL3E=;J^=&?pm%NNAEnAWM#M2 zR5~s2;9cU#Y2$YO|}hJJmgDKaOs~sEx7^J((p--&EshF`vujNKZ>v zn&k%c{Mrk8*_KO}iOU&5IwYT_O{s=R2!+@-O0YH1GC?2V^NU3vs5oQ7rg ziUt1LAS-erX~1Opg{)K?6}7rw-BsHX_;e#LYzRdXEXiN1BPlQ9X#Gf#%^K7SJUU&O>neNM2e9yuTO{yHIa%(? z)y}1)EWS#`t-7oxbt%XD|GBxa;NzWK$uM_v`E9XKvYZ4IOZIRlmn(VZP9e7~iY4qO z{Tn6Y9Q2Io&~`3g(i!af3C?##eoN6c*(#FDNN6TvuX3MCgnfdCvN zl7$kQB-4e`mt3Iv3CkK}oG8&b!h8o3Z1qKfpY*V4YqLYIOgU?)wH);Qw z=~0{_gF?n(%V#hPscOdJ8RUXmXBxdTfx%Q}9t+H5>KE#z*!S!dA2TT)GZ--#GuUUa z#)JYV3H9HlVdU-Akf%>*zdNFsjcqP!fe|{P zc#Ifdp+SRonLur?KyiUJ$23N6FU8*mDRe@{noY5WY5cy;z!6o`w{$8$GMRoBQ=J1V zg$9Kaom!fVjTE0Up6N`q$nG;)7%`Y8UDNd0HVHUPVc%l7C{ zZl_aiDhxHKHIt+CW=Dn7AGpfB3)B?|$ve-aj?yjH)oSxu9DRC0z(>Ggjd042K~|}% z&w%wL+-7kzmjixq_j&mRoWT{fBFXJ~8A!sd85PI^eY-;$KwAd7`1#=hod4v&vk#BH z`ePq|m2{B96go1%P!gY2LMWvsxFzp)s#UP|HShWZKH)mNf_&R_fSF-n&&c7$qOhq8 zLSEhKKhV^Iu5GGXeoIh`4~qFsq=_4bumM>Ba#xW$gjvjSyM!G{&D}Wq_%b^(9o-5I zpjYoUTHmO(Mq6!{72t>4jHvCNnU?{lgnq?uN zV;@d~l&ea&P4o7v5+vw-md5SY%Q7t6A|YJxGiBNDO@MFNSz)6%quR@L5O1|fmOlRe z`;=f>2xD>~;qWl?yX2Z9*OlEmVYi>Yn%xGvMdo*q{rP_H07Xip=DbM8} zz&bB6Q9u)JAN6Oz``?0y-lHWTH6yUG^h8kEXC2&mDmE5O9-)u&yedQs_gLC?o9qSjmGirSR+6bV?ZQf-oqLNedV z&2Au_Zc~vUs-!0FT_m=Inv;UPf5Gg*VfgTHm|5LJhU;q?adRzm`26U%nWTymRqtP_ zqU2`qs9Teod##Gv?bN}I-w%Vp!zG>vszS=9?;2b`(FxYb1(7554r-U4RN(SJZW@b3 zF+5Vl`AS(StJ7}h!ZXWF*A)*nAMvnV2cCAqqY1f6<7sb+A8Cn)R}ItZm};5!OflRD zAiK5dZnsi?3KgJ-hQ@sh-X#yl{y*PZSa{7QLQ1W4q55W?PV4X&8~o*bdS&`wF+w%5 zJIsY%UDx#C+!9=H0H^H~;8z&auIPj1gNxUt3+i3+#K=#iwpy#V9+m6y@HG0U@~A7P zdlA9qN(Jt5P;;LrZv;Fo817uU5hjoDVxug<^Z!v&Y1ngJi?=n?Vy<&{z~c0}KE13i zPaoCVH}Ht6@Z9~#g7Kzz8Vuo73Zvzrivvd^VO;TwV0d%594&iL?4S&`9ieVI;Urt+ zHaPMwC70v+y12SnbyqX&MK?{y3j>_I z?s>OAdxxdsz>oLOmKPQb)X&VnT~hm|g;r-Tpw=^n7HBHCxK_HIfxjskT|IYVJ+lIiWxspLlSud}Rs#*6WE(Yw%+BWWDjFdtz+8YwD;!x$Eui7dz}gx> zhm!OC|pzx?iH>iBtaf`+3+>VD$X{iF5F15x#+ zPXA2R@RLnmzZ!nB$?I3ckD8pTz`*^nZH#^uUa#A$j$i; zKA#bBp1ko$uK5NAHn%Ajcp!UAZWtu2C;IHF&xRh-$tALK3Y^f?6<;$0WXRA$Mse|db#!?_#)0Eg0%NdN!< literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_022/afni_proc/_0x034759bf09ede3f732a354f3b1727e10.json b/Afni_proc_through_nipype/_subject_id_022/afni_proc/_0x034759bf09ede3f732a354f3b1727e10.json new file mode 100644 index 00000000..c1937c61 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_022/afni_proc/_0x034759bf09ede3f732a354f3b1727e10.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "022" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_022/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_022/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..900d57f7c4ebc0ae4946d72aa12e8491accf0ab4 GIT binary patch literal 305 zcmV-10nYv(iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zR#8yAdG#dhWs#6=rkW-HNYcH?f)9{md>x<2hp=6&LON zx&`O9YTAB6+0b2mZnCP=R#Km*L9yFPrfLK)4kW+*yN%__=h?GXkQK8S&XPTb7yO|m z;FW-Z>X%qiYaG!A6fxX@;0oNHh$qnlmE>+dZ>o-4=LM`m#Bi~fCx+KUu8&!9vS9|6 zuYpb13GEce69NzE)0;7z)J+q^`R>~o9uEd;%ip=80y9_F*Y`KKIQG>a4hYBx_W=L^ D8HkyT literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_022/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_022/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1f5ca9e06bbe5497946e2b5553cd65ede01ca423 GIT binary patch literal 1292 zcmV+n1@rnJiwFpU%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasv}uw}lcpE72=TBA zFNsuUuib4x2vtHw6(u|r^#N2_o|!XiXFc{{dv=qeO7K!q$#0kk_%XcmuQ;BWy$}g0 z60_3I*vIzy&N-jI^YiuJ+0J{_<35tSxF{ehcmaY-h(J!lOR5x%ch^tx?SJ#fzxX%) z$ZZlybMS75W|EUatHiq&VH`Bo3A^y_gC`3Eu}rIS!bt7FyK97}-t8}UMzlNXdbb@@ z10?0zyN$@Z8;Oz`pH$wqgqk3jdayrNdYTC}Cjw?55ZbfTr{8+FTUsv6rO8`dTF@Cy z;PPrbl2}DDE)ddYMuoxmUYJD)kXWTLiv12#IdskhWJ=o@L52l}zs9xOz0u(Du-irG ztuU*Vr55KmhQ4$=a1IFqQnJFlmuNsE(NN$y2*TF1c!Jta?w($rzO#uqRWl>tQiuXXM zgbGp}m@r7DOK5j;Y73#P;4z75G6jjgu05Gdurh@xu^RaC905_p{Xj#mWp%E>`RJ``?uCb~hN@8ZTv7}nJLUzfjL6>r6y;GV{H9;*$^aZtSEvN^Jt)-kw zHJ4-t+Jus?@;lcY%Z@Ccfuu57quT9)YP>?oPGnO^+A0xu3nc_GB2+9bHLYmmHu^}I z^H~;S``+DNSf7Qd7X>7%WjC|NMvO%c{*^-3#@Zbv3c<_tVOxVK zg*73!58I}U&ybc6+ksYL>iE-E8y}vB8yU<&ijbMrY_t0F_91?K^3$8csOHpBV>n){ zYBoi|@efz@{HoqvU}5ah;g?Fn;c*M|*lhRin=8n`+GJ-nX@TZs^zvmts@U8}-tHP6 z?_ONx^nkU~Z0n@R(HW$x(@D_o&dNmx(KlhDNOb$i)a^yI-hFmuhsaeF7AiWa>2`bL z!4MC=Lx|N#cC#QjAxPj+G>H1XjNJjBNTq?mc>+bnqj&CRt#eh2GX9l6Vi{xXj0tdi zjp{6IZtqEoeW+*b^D0@?ZPk=8{?uI$tC4K1JjL+bE}1C1(9mCTSmUjRr(swhT?PH} zDnb8OkL-{po7gD{rn9rwWp_|ebhyWrPjev?+$uvydgoffW>l&1`klHR6dhd&5DpI3 zWjbs2+yBxo5;##$V97ZVkk&KK-=BHaQx^b&blX% z!XO(D`gHJUm<{6IxIcy2Qbi$5k<{W C1cZG6 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_022/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_022/afni_proc/_report/report.rst new file mode 100644 index 00000000..f30725e6 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_022/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a060 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 022 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 022 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072042 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_022/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_022/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_022/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5737acdf9ec3fb377a784de82a63e28dd88621f1 GIT binary patch literal 2541 zcmV`niwFpU%z9-4|8iw>b!>EBVP5rW;0T84po2nAiB1B^h{+Iw|Id%rK1eWC5_%jwDDK+V|mz}{~ z(YroFFZuv|mA*nBp=UvgyOQkGH_?oS-<~~t_MEe4vES~W*Z=;{Pu7aR?8|^e#}SrD zkl=WP989GlqFAD76oqk;XV>-9o<63jm*juTZ~rC#F~5~<+EW};5(ate{@T*qm6e@5 zyLr)cnh=j9$I>iDQ3QkYZ1W%uoP-(qTb^yiX^;>f=aaSU(gWz2@Y&vVW^SGx%9GH? z@(T}-z`LOwpg5v-7~#NfdkiK?qt7K6}3_-tEF<)Qts6&wYs88we4y}QFEp? zB{7U-ZeB7UYKD<#SL7iHWJu)%QfO+XsdqbeyU}U1w0@p_>xB;TuU%4QJ!6fULThrdN#_`zti$;y{sq-lXOk1(`bX_lPDRMl!{t` zj}8(8k0LM#P;2T|7ZQH0u*<9kC4YAjH+JmthGj!~s0Lt~!W6RJVKnfROkzuVWze-9KslpmC*nDbQ zTDxg$N7}yK)4``pWp!Jvv0z#Lx_#YxnrC+|3lZj;LjqU+dVV4DdAt##yQ|n(y%KGa}Tro_$s7o_H z`p@OHwV3WHb(icZ<=slP?ga&?)&0qyqSPa@S5AyX0?vz#c;L$wUnT^z-5NV zCo7C%N5C(*4&plA1aW*)74SsBK37USJ~){R_$1_bhs#e$#PJHb910G5v4BO$O$#%g zKrZ;~LSuNM3YhDh#i}rv`-O)q97p~NzYtP96EGGq6>uzIB!mKo2=_naVL1`u4Iz6% zLL9_hn-T6BopJ067*m%|J0+uKX+kW~SiqP!e6hzr(=`^x5B+F`qoL37Silj-$r!Eh zT+pA3I)Z(`yb%T52|7K4Pq?pwQsm6JJe+bY#&#xZRZx1#@eB*TLW2h#3W54jmE)>7 zozR$u!xes&tYDA|v-un&%HxlH0ZzG@k>_yzDG}r%<~GOP3c4K59X`{1=C1Iu;F%*t zi~W(1g{gpf(h+i&pGm;!3XVKM?pG1V#1%2&jhBK_R1q*Y6pqI$9CP&>)r;R_smv{G`Qvdp^Qvi(eV>fy^ zF1dszXC>kUsWUpO!2|)GooR~$;G-pWL-UM}(57gLm+d7r*dO%!TE`NoL90_7rI-6Q zoc_R7Zk%JSKuF#@)ce+;Vc1&dFwZ_erx0UcrEa<)#-M9y_93vIg4?X`C<^d{>rWa_ z;S6rtP2KDn4Il|umQe zcDGjE!KkwBs@sqSAa_l@&zQv-Zdb4)y|bTZpIu}}Byhac1$y;9ZexSP@JQQ_Ail5}j=Qwz%P# zhP7`ncKiA3*=^!@jNYy@qIHI3{p$RpX#GRD2tZEjWvP4@)_FsS0-A99Fb;wDzXK6{ zz)L{y=s?al7Zp$i68QdO%huaA(CLA}IRAo2e*EUYXf3k){`$Zkv9A2b_}p#q%LMbazq zuGkny|9EF@?I%7Wtkmk~s&DD(q7Hwy&Y#bx*QWn9J=~J`g*hj69OO*SEWtSk=&HQ} z^fi;AH^^Z5;No@Rf_k0p81s?dvs*^@LBq%=$JwXN2Lp5UEn>LQY{ESbYVOP8MIb`S zWbeX_u-L-u?S>Bf|I?z?7g{*STvjPrJA%Yv9}aOkw#8sN1ETQ*|lnE z`7|Ls`B6xh+Iw3!0hRvv z<4uWW5hb^l9k)-lmV+cV@w2y_`TND_C?-L2>t-_y@Xgy-A<*UUJZrzrOB)x;T$o_w z+qJ_(RT`0)CLW$*IPBjO{K+%(ZLBk2<>fH=UdLpLU2ffGuXi$^0=|$N%P?WJ6;)-A zddp}Tad_Ja8R08fj!U7KcPdpGYJDS2lVZ`cFW&TE8exZ>q0M9162!4$L=x>@rP^A}5{fBil}xB0YUdwP6chs!0_|&7sn+!pcr@fC2}z%9H*F7{=lkxfK8a DK2!$T literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_022/create_stimuli/_0x27d39a75b3df3dee233986845c0d00be.json b/Afni_proc_through_nipype/_subject_id_022/create_stimuli/_0x27d39a75b3df3dee233986845c0d00be.json new file mode 100644 index 00000000..54aac9f4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_022/create_stimuli/_0x27d39a75b3df3dee233986845c0d00be.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "022" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_022/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_022/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ad53b2a40542fc11d2192268eba0dbd9a0ef487d GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tDC*jaL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=iun5D_y_<1zy>2O literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_022/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_022/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f8855640dd85ad6167ca6d1aa13a54c83058f1c2 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~31jl3vgb!yW|p zA@-KavgM}jhGHlXq$sv!5ADOS)F3E{vKULGN>WbJBEa@itN`DpJ#7DIzhZx7hm>q5 zDYB+@g&-2i!}ERT@FRWr>xDo6y?V|*`b$RhgPgcI%}GibaS0ok7vm9;rM|EY@A8kb z^;>yZHuXGWI3uOL5( zsnjclqNzO5d6hCnM2tgn(i&VM#ZgRC;58rPRKokR=>-ZTR9rwPSK0~BNP9OWF&8QT zlEy&NS75u?+3+9qJP)WZn_j^c1O?=KWuceIJ_&&kXO{EjI$}X`@B<{2C=6UEuuP&N z%d5EW9EWQ&EOLo>P8b?55G=|{0+UciRKg*dOOQk&70&Wf-`wQ^M8v2}NQBG)F92=s z9!we%k|WCULdj{ot0@n0imbyhA>nXB?Rth)o^qAa00lT45(Zf39}fnwGI?6SYQV=2 zKnMfx+k#|#M37OSFlkrImo1l%e%HRLS?oe35ZfTn&m{0JQ#$Le3-rhxk<%y#2I8pNQJE3l-Y?* zRxQPf0{a}RIe5H{?5Wn45BMcjAq0{vqZooE> z0Es61t<;VBY?*XP*KAR$4%|IqT$_*=w+a^804Jx+#agAwFZ$Ye^r`83mXmO5b}6pM z;2aU< Gor_5996wv^{%*=5*ac0lJ4RC`*R5}s9eD24)=p>BsV6vQf>RCC%_9Ad=5Xm6J&dh(Ic3I%=eyP>iV-NO<2-^{t`%%3M@<-Qj!CRL4Ip;+ z^!=48eq?sMJ~-NG zygvNu_2Gp0Se)RYZ>`oWskQ#P^X`ywwbpMrFxNmjKy8fZ0A&9i$j<4I-P0kvvp{xF zhxAW}^k;$ePlxQC4%zz%NTZM0)L=Y(A~hISXC?iK)bPQOv#a5QA!k>^dm)c05Gv^R z9AmaT{n{FLHcuW|=A^Rz#*aC+)?TQ!b*EC+mMK)$odnKHBC6JLHJz1!HU5+Ya;U3R zv$4q;fkPI`pxPr;$zB&qwZ$==Qh$4fvc7H1+fb}QWsTEzBt5Tl-|w}d1Vu;*sP^Qz z!b1ouxDD5LyJZpRRXSi?5JdJvlG{S+t-e$h`u4Ua%YNBR;v^yZa$Ryy`t`!I`UZ#f zLRH7ea$8?8c2Hv_FSj8my@Cc@jjs;BL$hLOo7<*YIklngoF&xL?uTtu=MZj*2$I-7 zdCgpcVp^CQ)&k1|7Q%dHZewrtvKf=S5Kww<>m?|-g)P3Jv3jJ`u8L_0{ptxYNWrBl zYqb-oa#yOG4#Hv}P5Tz?6|_g;;$_T=Afrl|>iVr-fcsd620{7cyMO*N&)<3xF&m`e zx@@mlP%fMD-s#?t{D=7dy}*xRKO&^-`wt&%Jm}pEy~y(dbHTRuaEGhYY?d%d=$kT$ n5(59@WbmdW5CbD50<-Z|3gVi#x-GvyC<6CCQ_ZFe>JI<_\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_022/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_022/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1e5d284b7829c4af830da26ecadaa39f67f6e34f GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grDgq=(kuqH+rbURxm|rG9TaKi`fWVT3gs)%$l2YPM z`=>LR!Jkgie|?5NLEojX(z_sqT}oEsREfqOp548B@7ars#aZAl%m4iMr%TCS^qFIN zryk-=CqVu{(-G$S8b%xrJ||EHy*>lh(>!`pBQm; zz>i!T@y8Y#0J}c#XugM4*F%o#nI5uC2VuTCa7@+nU0n@Ez8ell>Wm4m;;?^=^guNY zH75wX?jtQgDu$S$Wda!^^tFUc{j2Z){-568YTalBIfgb=Z-QxSE!$UqtkVjdRWvSg#o7GmeE_UPSE6de2 ziw_-hT6x3=w#ReQu9zilJ}(r@`OO3->D+cjxV61y@Gd}P`?WfL;?2<le-Y|*Q<^Fxxi^Gi4nMMKfF9Sh1W0lq&XUCzq>u=1wv9uu!OA zH|gK180VmG%!VH3@)e!IuAksM!S>8;`C&0%!Qsvv40j5-hs8og*GPz9k~D>i3!q2< z4id{^1x=IbLgfoC(EJ4F2_BxMSo3uTA5$BR+E^ov;qU*A24lr4kdxd3;2w3WsE$1O8eb0#q8P^RxL0_ zClpT*!xb8I(Jr%4+bdFBWWzCyvD;7aH$e)WkcnnftYNx--)7*Lx*1qHwI7>IKZ~i) zp_M{|!l_OpO(#Z*PZ?%9vsz>im@JGLOp~r@`h1%N9Hww!G5vN?qu4Z9Y|_RFW8@VW zOdYwyVTyffKGDXE3GH{i5T_07O;bF@-r&6PXV`fkKFC$R`1~AztUO7vYZ(;#<}ht| znjfSMA04L{PrMWdHpPZ_GRzt#4i+W0nk=;039xCg!_Zvd2yLv5(Y!sE z2D`m(S8OSaG^n?dN9oP33QvE~D)%l(R}ducJeRskui8+>*7G>}7V$pg#uK^~^ikpYF0a8`++lv+Sb-tCGaMEi<&{UM)d9bQ4cZ91ULFsNtb@P(34 z)&(K2J{W9kYEjq9s+NBssHN>vzKpcOmLY6G7C_w9q%Khw3)(JGM^bAyjy}Guj!Z|l zLIdR0yUq63YQ5P}J5>er;X}sMcF#=9(s<7bho*!1q3vbiKRFSM1Q^GsI6!t5h62s9 z5Xi9)XN#0YrPrZ(`&9)J^gb)&b{kb0F55B@T<|kf+3!t3Z`oO4t2CF|s|_%3cSx2# z{_eX}U|I-cav0aKH3 zMrb!XFzfC*TZ|h}D)(SP&0a$RCEgI9^@!_brP~8PAH#^+Xjf}$OWIQ;P_>HKA{m8b zzLlGwK)St_BEhPXnz(mS*b-?@3ikemum^|Xqr*{VeGeI~uVo75jm+VTqu*tcDoR|v zf2oR+lfmO&U25&MYih6C02+T71%ZbvJP%TZl+D03xIy9*qLBk4N9rBit~{;5;enhq zmWgAyr3m?2RjI18Zs)>1%gwGU9%(+}VY?1I?Sw~Da+Joi-U>g~5{6d|)9RRcnf1&t zoCqMhb#b>>t3HDY&_hGxz5#a0jj{i)x0aTEU=tywR=H4pbEdO8{KW=;IZm%l|7%95 zCw7Oq(5vg3K3cd07YN|AodW!tVA>UZaQWcib?Jb5m)tS(Q>mlY8|}x{Mm#!=KB_(L z$?0B1aJ5#0a~#y%XUQ7@PYXsnmrjJqExg>UN^t*wlvEn_T-V}l&9s=~+#QHGJFd?T ztE;nHwf;5SqAJ{XKXSo%(>o1D@Kg$;)sc$>MY2vhM>l^0mx- zLWWGp%!W;yY!Mlcobho6{&_|w85sDkopCWos^Q$~*fkwu<9f%5jWJN6O!Ao>m<5_j zGgKXq*I{)1oWy2k4TxpGeZ`ZN@H4Ci8a~N3>k65j&E-`zMoxga0FT!=aw)ZdE@uul zHUJ`TXYDXp+qe*Xjt&miTnD3I4T26e(;>f>i}Bjg5vMRyglqB@uESSI`3i5!w{T6q zh3oJwq%r>WMzR>a(GTbaIHSoq{Gbb;Z}r02wm$(l2={ x^89;SEBZiH17d>DKP9T5K5vw`0w=^EvTlRygoljg=!l3e?tlCW;+(l0004DNa)tl^ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_024/afni_proc/_0xae2900a421e5ae12940c8a7d83be362e.json b/Afni_proc_through_nipype/_subject_id_024/afni_proc/_0xae2900a421e5ae12940c8a7d83be362e.json new file mode 100644 index 00000000..778bec82 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_024/afni_proc/_0xae2900a421e5ae12940c8a7d83be362e.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "024" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_024/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_024/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cdb865d945f5d5f076ec1b91f0efbdeda15f87c4 GIT binary patch literal 305 zcmV-10nYv(iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zu8V@=&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMJKDu>RQfJ|u{Bgk;T@HcpNqdPb{?nhCC zo`+qnEVa15()Xp?gmXv`kdhVVokRl)iG~98APB3=U@p3gftGc@D)1c55i+R9_RGzKULmqlsK!rwii z5-LcgFkz64=g{uv)D}Wn!DABBWDF8*-FPw@VP*0TAf zkWPZZLm^6vv3TR%J!4ftl*GtrV@Y*xf$WM@gD&MldbczoYl2#i=nHDul2Z?7S4%mT zYAVSDv9iR7>9YC^G~*1NsvWPoL0&?K4Hn|J$7N11P#b|_J9FWOTb zR0o$go|ZDH9Gv%-n+;3Z_wLS2`Ydd{C?HuJyOlLEVk~m-uN1Nt=I$U-2wtX-S{h6# ztO>Dw)G}p!hO~Ut3bYDaho5e>@Zou=$RG}_2$@;!Hm5&t?c>)cKVI&)Yfc?Bg2UOV z=2ANtesxXDuj|_dCdMA@f2kzwA8uhBo9o_vbB#8zwAoo~TA(=@ynNYfS8Q%t-u4n6 z?_OL-d%)Uhu60u6=mgS*b`pAbXJMj)=o>e&NkqLq=5^++cb{F`AaWHO3l*KzL{WEm z)JMg439%Z+bnqj&CB-RG(iW&CS@z%s_z857`k znyxdKxt%8|&Y`Zc&#Pcjw_a1i_*1tUP9xb^d5Z42Z8B1J)njo903$cvXgp^v-PsnNg+2@;h~#*mQK&fN-(5 z)NbmAg1+CrVh6pyRfn!og05%oyZ_}%=*Xs_QZ;Q&yK2iUd+Uwcu4f6MdSpUhd4PpP zrW{9G08z#{w>I>zcWxagUQR}_|LTjs{|L{YZiC3mWQfF8HN>zXg$CN9&^w7D+V6GY zF@F=+u9f!saS|O3hjDi>NQY6\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_024/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_024/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..24a4cd97eeb8d5c81f8de493cbfa9e2f5fa0f438 GIT binary patch literal 2540 zcmVb!>EBVP6lvbWvK;P?|H}TAJ)mR(wv%pN>KTtd92^{+b8tX>z+cz@@vl$U^1t*8pM*ytmWUtY zXoPG`r6HnNqDdGAQJkgMwUeGcrimM8KV|p+mi?IBO*gG6jwlKIto3MZY3}mMPL|#| zZ#s#IOX4GG7NIbN!CAVwpZIpnjQo_P8&TrN#KYNSExq^{IwpL!5A2zfr3dmP@UZ;a z#Ut=;DElZ1sTG9Sw?YzPm-v{&V{WQ!)l*Vv9N;#ftcBBK*U z@WV+Wl>5>8=HGw0O>W+NmTq9*F_}B*ZxcqYUj^HA~k^#bS|3x`x?lv_bM|7!M1@vQmbQ zl0+gxku-v-ZnOrfVeV_j6RSHgdjm5|FTTPri(ZyqGeFoFm`^ODyZ1CpKbK);<%Hr$ zuGWeVt2OxzK8lDxmMKfn#=fCH2Ro2xP>SS5c1G0AlL)^v!ql!Dw!2MjUsL-AIQWQo zyJVQKz?!P@)a>@GWuC#0JTM4QZE9v05`HbW%dGjx53=-w-t%UbessE;z!AOMS_Hkx zg`cpzoh;#UDn7*xvDbXjgRvVkbmSr*%Jt$iQ`a6t3KwCKVYMQE9~a6}nKfXr@xn0G zcGFT1)jg}Hfln7p%C=Hv!Ls~y`IoTW-YX4kP*5790vTj&;T^iZp ze=n`AMRd1VcgSwBv{SCsT|Woax;NP^7V9C|trU04S zj!O)C3$wMIN~unh-6a_BmWw-;a@|I3ig=bcm3jc6!T^nP%}O25^WjSUD=9`%j!O)W zk5?E)wt!!A9mI9q3F7#;BH)RDJ+2hHd~iG$@NvL#jmwWo$ngp}910G*k$^?WO$##~ zLoWF2LSuNW2$<`f#)>eQ`-O)q9EIKrzZOzF6EGGq6>ubAB!mKo2=_nWVc8+!4Iz6% zLTtocn-T6BopJ047*mH&J0+uKX+kXFSiqP!Jh8_+)ioBz54~`O!=cCVSim92@ffY} zT+pA3I)Z(`yb=1`2|7K6kGZdcQfSY)JeYDU#&#-dMNoRf@eB*TLW2h#2!VQGh2x4i zozR#D!xjEMUO_(*X7e~kl*b==0-SO)BiH8oQzFPk%x#X{6?8b9+kB?^%vs?h!82Qk z7JDNh3sV8}q$6Z6Ka+ry6&$&O+^Zmti6dgd8*c=quqW1dIO6IvG!<01JO~rI zYS3`L!gCsqP8xrPFYnI7V*RTxPXI8=H!B>t4#yE0uNonW;#DKUuUDAP!WE7^j-Bw$ zxZn^PpO%OdB=+dE1{3&rcB(B7fRC2g4b4+NLYtx~UbdIiU~kaxs~uCI2CYthlwRsv zaQXvRxp9WI0wMYEKhHj~ygDky$Mj^t$N}Xguj6v5_tpi{^Ik#D_6^pic+#3jvgSZVxyXcN)HvQ z`k-2>VN~9Blx@fYkh`YVXUyUhx69d)*4fL_Tj$vk@ohJ8fL>i~cfYk-?Viv{&Kp7$(1hEEegM4x0z~u? zF9EHi0Xg4XR6qqt;MHfQrL`@f(*vDx{soV|Dbys~5xVUjjJkeTEXI3KDmNgY_CPm* ziR>tid`|?%t=+$KF?ml*c2yK;X_qJX=|L(V2c@^cRK0a4P`OV<*prv*8yG?7**TIe7 zPvSVFby)_g!pde8IMOJ$3A3@gp~UJP%x*kw!sUV8G}f76*iy{-X2Wb)3$cG@&q|AR zr4tlk89vu>h~CI}&Ti3kA+5_(lzaHDZeAS=D+|d2!;Jv4+fw%i&BimR06TGz^gVc& zZ;Zo#URYcEnU4r7wfdRrTY9>v!(XiPm-FeZ>3>TPwg27xPkh`7Ra?i$RvxUMfQtDB3h+WHo@s0I7(|16kH!lQTs zr&5w`P68VHh=uWvCxXeP$!5A4La~D}`0OY;@soL>Ds4;bEu~nLMs~R-%^y^)YNfFJ znUQ!>7{jXAid2S!ZX=BFG=Kd0@;x4ZAkPtYNW@-w=GouVOA)3XJ48PSMx(qlP9on9 z;B4unm*HfH;-7iqscu(G?3=W4^3v5whUq2Zhe=HH=bo#h<@1$AWB5k=$HAj5SeUzZ z;CXNq-`|SzM>A@HOZT^y&rkQa926rax>vul1%Je2p8?j*9;4v=$fZl|-K{%-3V-_X zj>NKv;=9X^dna1UK@ywz<$KQj-C}eY5kJ0rry2P8&b=!T=yG_Lw%_NajSFQij4|@8 z>cN2`jYvde7f&%9_8$uVWU28!)|s#Jau|HCBQnJfw{Ef5JDE=bU&xJRn6TPKrNSQd zmeDfe@V*l=!k4oghe9#e$`u)EeIrQXe9_a--}PV`Vw;_z%_GmdC!O@BWyMU9o;;;mumvwxrLv@CP-$0SWvAFjzKvPsN&f?J`UAbW6#xJN CFZfCT literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_0x79dfe99ab4a5e6f1d1e008e0b6056d0b.json b/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_0x79dfe99ab4a5e6f1d1e008e0b6056d0b.json new file mode 100644 index 00000000..1ec53d36 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_0x79dfe99ab4a5e6f1d1e008e0b6056d0b.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "024" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a68468e1ca1b2ab6ae772a903f3930591b6e33d2 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tDCydZL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=6)*}4_y_<1tj-`O literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5ca28b992b18a1eb476ca4ef5a609aab05c646ec GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@Hf2X?j6B40{mV zhuB*x%a^*%hGHlXq$sv!5ADOS)F3G7$YLy!DoHs>g8yLV_OSh<{fhmS9ZIsD zq{y1i6@o}456}0V!;kdgFIWEf=lZ4M$-dw$IZVJ#SOO8_U;`hR7Z*OLJiD@k@BH_? z@oRpZ*Ry%TX$*O`>Pes)h|(-hBbH~&BxE3|^uohD`|L@;8A+t@hz_Ml2O%j@^6WBU zexBVrJ>8~Gua#$uE>%E$Ci860&a+QF!2>oZa2FymKw4#EbzjI~5Q%*f!3ZKG`D|zV z$2?m}HH*}l&g+b8kOB4JtTnnMT9AN6$ZI~Jk;3;i(~A_q(?Vh>tIbfv(A6JobP)NR;r`Zx5fQN(xFF0STB9@S#A0(k=YT!IcRp_U2 zQpSDnG+dKYnJ6L>;AFf&xF{KC2l5EC#uOLZJLN% ziHIViBC}$CDrq63Y_5%hIT!^lMt(r{DZ>aqX*otkX62^frI$2Yjs<6CA*zkDfE3&a z{1fyP%Ely2!mAXxhl-!Wow%yfI5sOplcZSpvB&vRBgZKIVqc9YZm5M;+u7{lHc$vj zCi^YVYSq~?=~A}YqD&v!`_i~JAun#H+$#c{oHCzQDh+?mZj48tnXcyvcvG{hK{bZw zh|GU_y?E)84}o?1Y$^74U8U|GYI4Ienlia=e7$VpbFZ?tT3c2%!7>x9a+t+tw^|A1 zK2;X}CB9V*1X9G7P`1&-*lJHOZfr!dSJ?OgK_#`U$2iL_1na3$9Y^b95*t9-3VRw(_0eeHCnS$+FLkYP2E6*(-K`0( zK-Um-Kp8jhNGMh7_w5%arnG0|+n$AQd&0MUQNEoS`F3XE+nMm~T$FEjM!wxy_;x3J zyZ_C1JjaZbgtw66wmGlrjQeo#SW-TKy0g(mC{ILb%+;i?*KIUTda&_FX4mPXqutuk z@s~%(6XIiWqKAHAwO)`~?{8S|4jEVL{f32e4WxzC#)uX|_TPbQoe$YQAF@3QWcz%` z&iRm?Ss**-Lw3)H?EVi(qmS9tU_5*zH5gYHCH;}q@WGI?tKowoXIH~}Ax|j~E9mze zV?}xTRbkxPI(uZ9ldAAHe$278{!*`RSf#SIO`)=3g?L_qEL*45bWs9@@y8^PU|pr_ zwJpH`4_PdODvwwtJMAtOHe)(@_RR&#`lc~&VzGvmHI16Sa-7z~PPd6AC?Q&6wWr1v z9wAu4_3Vz_&QmvAV*@TE5IFE4DGI5#+10YpFK%lp@8|U}2t&xORVDYNKU;WS-QZ}p zP}VUj-^s2RJFKz7S34L~wn7F%kFO5DVY6geG(A z>@{-KD}G@B(1L-r;Q o{Sfef5DwntfH80YAI-*BDU55r&~5(RQR>?N0)hcEIqDAp0HeX{uK)l5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_report/report.rst new file mode 100644 index 00000000..c24014c0 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_024/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a061 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 024 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 024 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012228 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_024/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_024/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_024/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..bb543512684d652bad341aceb796af2e8c93c0e3 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grDgq=3Q4(DxrbUXzm|rG9TaKhbL10Nj!dI{WNhxus z{h1le^heNteTKe7AEa;6>0OY*E+xxxszhTC&+gv6_w2>R;wb6Cl5@=?HT@4I>VRp6B{O9Nm@9M>+_HRuKOXul+548Lvjm>InJRbe*{NaAD@| zR_Z5?RxY~^1Jg2tQ*P{Qo(GfTXn8Mm^nf_|A&!>(&RQ(r9n%VnC-(*PX!A<|vT_2cNB$C9k< zwwg+(1uSlx1IP7|5qgmCyZe=z+Nd_WYP(b2llJ52CXCuB3#%uyWa;Z_94+Q^xg6HxAK3&W@uyGIW-^ z%41b-?LLX4PkFe!e29_H7dLa;#ZCSMo%*IT;4w+i(w`EP=3fh&*(OqO5BO0`i@tNYbmwJias8+lUQ&im@naQX9fm4h1>(NP|`ILA{Zx4q2vM( z3BW;ODVESAnJ$#R-~!E0aGv17S&B7ZXYet#(Ws3z)F?g^89ZdLO^pJJP7WpvK65GF zr2S{6M{$Y_3K_zd&tMi(*G$AS$OVngG<# z*k`cDECrqsDcW=HI~ zp#d|$XL~93dN#!a2743-11-f9#(u)uF#ZA4hUZWccr=I4C|AbF(9 zV{}6C7%^O-K^N^Z3$;CwVv!BUG)8VO#oq)ebV4SYO|gdQ`hA;$BkHDa>C}E?GW{&3 zJ_l9`4GJeZjWih>DL!SG>C9@8-Dk2eVlYj*rs=b75^$KpzQy$0qDHZ4u-K%H6UN9Z zFqk@W2ZI#*)O@Us7!%s>dLd35*qfwyg1!EE<1euDKG@EczWDqcfUG=8v1=I=`{p2R zc$y!i4Idq+7>~Ua2R6lqcQVKtCJyF%*Z`s4pSK_#4jRw3*$J>|vBS`u;|Oi6jnJ$; zlLoupPN&*b7->*zCXdpa9TlGbpjGZ&kggy|-gzcwk;v}KTspB)~+^PfEM z?8Bok|J27{CLQEq3LP0xC<$kk2ui65wB+4RwF=R`;$45hCt8PBkZ+p~C^HP|8998R zC~WG2kXN_+Tbe5B+NP@Iw*|GhRm^W9t*~JT8;}JMcNM8al*OF3OVp9n+>N7;FRLTd z(XG$`dG&6i^|e}SwAFT50e$#@F}2+@)3P+)v%-PtV18hGS@=&*1VaJF@hJ|ForR%5 zvn&L1?8E6I<*L$c)4ctv1POYdm2tcEvJ97Pkq9pMnX2sfCZMN$ur2n77&_ zOCNvtT`DjwgfTggaCn&ceR9l^>&kAOsM}9ot!@L|BJy^T2(3Ah^_z{;D#+<>ooN24j{bnD zNjM|48f}<$ca<&1H7J#Pu%Je_u7DD+SD$u?>qVv01wS9dh+1!zD{52PQzTHeO0`Kc z3dwvcH#>oJx=lrbRV6iX@1n3J(wr3R{R?3a4#S6s!_4X)GF)HF6gJl~htH3Gmr1H9 zarOSCDoRcUkGeIfx!0HHy{>qu`G|+@I`Fg;9!u50>m?h;%efYWvg@GF98SM;TcG#J8DDU6nfE)E=xEaQq-1jC!dz;S}vv*i34*YokYf`8+aDXo02z#kJDy4E%jQv(Drz znc0L4nUI+dn>N`ZG9EeO;|%=sj7&1n_gy>VVvbb9xz(|2I>g5HjuRWBuR@vRGdnN~ zG?iwkIv%aU=;}F%^~?$o%YOTkCoAEnSPe9Ml5Nx!GCP~gt7wFr0CNEzt#IU0Y5`r& z46LmIMBdKIVX(4xA@~d(9IUtwM!^aM9cZRQek~W{m7^n0VWtSzSv4I4O?G_E8KBkNx(J~_ zlZCc})4rm(w#IrOkB5WY5jZ+n`S#@(-@Z(VpBE>1I7+PUC#3Elt!FL|5m)z*)-o`c zgvt|B-F${$X%` zJu|JWJ3p!=y5#&xz5Xo1q869$R zeuK|v#GEH@Jd$I+fkDk}7DOJz-jW*ziRy_yz3Q`}hjem?tek=-GKpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zc>u;XIHOMGwN} z;N8~IKI0@Uf+B$7AZY6zl0#8vK~U0YMXy9EB(=5^7-%m+1MpV$&|dm``YZZZI+V1# zwgWd#H-ce_t>#Cnm}%@_!6iFqBKjgnB``fL<}UAesqwVPalVzkyHww=tzoe5Ro!UZq5@H z zAvY_TX0bZad6jVuGNeA7v__Xi3lg#zam|M`R`|Ybdl3ToT1ZUgN;47(Gn_` z5JlX#B_v`5#Ij~mJ_bhueO6gyoP!TaQF%ZRTZyI$c}rtwL}frQ(IE+_rV2kM<2SK2 zh{2KyXh0BPOufnIYEetOoCJ%9gE*27<5x&GrA0~v$I3{hNntldc4Ab5%=mQldZz5E z#Z)sypHdwiN$U1^YQ~3L>~S&zsqB(Z>$@izE<5gp5pc@=BUHPVQi+=h*@!_4=|9%Y!}C+(JHkzKiI@X||WmJ`95U5IMqEFc6g zhTsT1g|x8+lkhSF?jz&p+Q@p9C5c@jnx@6Nk3G(p963bt7yD{NaYHS%JFSNsxD6DB zB$NG?n_6|YOuCe7wC#THCilxy{=Gu7lsqK1}f!DSSBvM)1rR#N&z53;*Hz~2A}7}!%PCvy##hS@K6ff>r@iS^6C69iDTi5NcdL_9 z9#G}rUm7^YKqy7x2<2KnjIDMBQ++fV_zCHw+6!H4oCsch?d;S9 zSD-XK~N2YXU#M_w#Z)bwHb5^|F8S!>!!P}kS?Vc5HZ$`YmS@8BI zczgeicRa_Alz=x8Wl}l|433kfO>1ahoO8CX9-u6zKvd^anys0KQcS5K04Z| zy*~Wn_2C5gn4IXLUs$abpw{~9&bvd_)mp#d;9MKhL1^QM4u)|7@!MZvt=#RvP4-Ppy8$LMX>}+^%$YTsd z1^u35tdOT)7RK$(lSh_4sS1DN#~xd2FZ9~FQ!;DI3YB#y!t)Yj**eaqvjQlLKPG?_ zb(OByHU$SfWKjlH9#JK?Iw-go$8d7<^%-P+)0#I?tf8`|aWhb@R{MUp*F*_Qh?c1K z)L7vWf(mZK?Yf;j^UNw6a3O)fz7J_3q~4lKrO+>KYbx*O^(c%YFqbRIJ?S?K&#D_7 zH4CMVQTevHVC_(2MK8B8DYHTbLXWQwzhbjQSv0q8vvgXdx^tFPPrDyBNmWCJI<_J}B(l literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_025/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_025/create_stimuli/_report/report.rst new file mode 100644 index 00000000..7cd16449 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_025/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a079 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 025 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 025 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012355 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_025/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_025/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_025/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..66c33667918324984d5a9d80ee9dad28f3c5bce1 GIT binary patch literal 2841 zcmV+!3+D76iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq!#Q5Ib#rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`0OY-E+xxxszhTC&+gv6_w2>R;w^QGi3`ob~2GY@g5 z6Cl5@=?HT@4I>VRp6B{O9Nm@XBOQc8D~NxJH~tyFir1r6b%cCux=vhsv@~;fEA;mK=^@K>5a!E$$5cJv)zx6=yWwD{PMPp34tpm^4^-1o1#yel zeWV3Q#Sk;JOdw-~zLt=wee+`@UinemjaHCjD1=k=M^O;-*_@co6%=8ol;0}lwm4xc zx4pF!6SI-&!%V{UhWw;jugB3XzGpf-*XnuNwycd#!q_qf|Q$z=0nk-L+glj^2AB$;w`8xP^qbnYO|}hJJo&ZAdYUrsEx9)dNNCvzOBa5a!wEg($kWaX1M`9 zzxRS(R>+Ha7|3y^Z(@z>L#TVTZdF$HCHaZk>MHH75=S?V(4k<*(H$8&%U$J(D!2BY z#?j|ITwXrJ$mfgO!cK9UKSgK0=?r*G611`}*I$4iNHiGv{4_g#Y$ZvA-?2%|ZXYyS z6=`3pc4Q#<$h3FOUPu;Jsmf24R$HCr8F(ZMg9TPAlG1{N-%0!uZ;s};arAEcMJ0|t zSS%?ZQg79!i(aLjACtVzFX1c{4RMbhRbIAX?#fs@vor^4_Qo@%EeC7`k%RT^r&+^j*Zz^&7jxvsLGeE=8!NsBD}QchO8aiFikb9Uflq@F!#gaYT6@-#!?iPfH`FshxN&i;K zn1h}%9eOC_N;-pGKfyVI?Wx=ChlN}Thr2T{*v$(M3;B|+kr2T+X^JHmK!E@pB$kB| znk3W3(pOxd`3cSuJUCCW=IabTp*9+|v4$GO=LH528EjLdz@n3b34_mFinnS1x#>}y zB7;JPu;nwDh14|@@f>nNqce@(xyWE@vxr4zGUbJODfT@(#V1UP#|%ac#tilutT9W0 zCkf^6(q-wMNgGV|n1tvWr8YJxH9V%+U@*c44LdUXv(kjMcmoC_+OXLXdtqq6%j8YLVS%vM^#WO}eJ(vuzS^n8Lor^xFlEV$)!;NgJn(k(XyMb>t2P zDfX%PSQ{}WwBPkYoHnpGN$~`G{dwc>u=76L5lUZuIR_vsPgCq#2F1QPNE@E!2Wi7c zCn?5bFU5gPvEiK#vWAI+#U3_5sP`8wNQZ;Q3vG4+Y+CFvG#5BR8*3vpYtN*?UboY! zHWfx1)SAho^kzqer$1RiA_E zNwm%Kwjh8$xcj2~5}v^owIa#wdKpB*t(g?af_%F}6+l}Cx%kD=Aw2)d1J6D>{`zly z{B_bn9;VQd0fmxqR*9gLnm|k5>r|@{?Hk_p2YjM+cm?^k>3}lBpq`P#=ZoUDE{ZvI zr~g1x3%a(gYPlUzEj}pbwvm?KGQ=&&0*Jec)FH}ZLE9zjNNVoI(WjTyk?H7GXn?$W zztQ?utu@+eyR3jde8`yE?zw4M8t+-*z;rM_u)Qq&CntiT2;=w+2guICP@q{B0y*~a zbdhpZ>9%R!epiA7eaOnVy?R-O%eG7e7yL|B_6HNtTXt65D$b<#Y8}j5ZIY!=fA}F4 zm=?mA97s4k%=|ey=E!wruTIqMXRlYcfo>6byG(@Eg2?*A#fwtyJcok-k`+?N~a5cK7|pr-YQqrrnIj}plX$BlVlW<`HnC< zfpoe}MS@i&HF58vuqD!*6zu&AVGobOM@PfV`aUvTU(4jTH!?>rj{lTNswi>w;iW1{ zP6m&=HL1DZs;J#g9ccVz7z7?J@jOTsQZ{|p;QEPAh(->G9I1D3yYjRGhX-=fSSF6) zmLlXUWu>f6yPXU7EH}Nbc&Pb^hwVD>v{N2U$Wa@HZR$?Kr(Q{jV9Jp4c7c zLa(lC`f%YATp)ncb_(!of@xRu!R3R4*QEpMU2@0BPo=h6tG6DP>+$d``lRx>E2n!A z!R1N?&T&w4UnFk?JS`aRUOEvbxA1bKEW!Q%Nm6Opb6tzKHPd2_b9W%(^te7ftgcRP z)!Mgki>h$n{mcd9P46ri!c!@XR);PQ9E~jFidO`~o5R&;)q`ROXRz&vb<+ta*&?^a zk#{MA!1eX~HaB@tREve|>}PBS!|VXAiY{__c+jnQJ{l!&fWCZ-H$aeQ9~q`kUiD1k zAETQ-!Zvw`zU%h;$zTxrj_$&9A>&Eh6KQGd|A1KhMY{1AX7MGcM*xHO#F}T+<;ou6L5y7=0DWB$wHRS)i#jL)GzU z9Y)vZBsMc^KrH+HE1s-`pJFx8@M*SDQ^@SBkWqt z7B)6m59IN1C>(>M!?o{Uef9mTl=!?j!NYN4bw43>|9CTVd5E~Wf4q@_xg=x;sLdm0 zAms6-kh!ZvidTmeuM<+dI%NLpkooI`%wHX{aCOMS{}GbZ$Mvd#c=(m7fw+2G(!WwQ z{Nj+;uZCY7^7_^AvmqBMFmQiv8zWzq@Lv<-T;<}HMRuyh-~5kkTlbHG`QWeHd)XqGmjv51akIXozo#F=ePKLM$CEg z#v?iA8yM8wcD}%a*jsVKAW=Qh=U06;^pH*tk(D#hgr=_eni(KNhF@cdJv3hMJlk;`*p3?l0`$WD03XpWAE=;HndqZDQxxf}ohc1)4) literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_026/afni_proc/_0x0f44349e272f010e5b6386c8c9482953.json b/Afni_proc_through_nipype/_subject_id_026/afni_proc/_0x0f44349e272f010e5b6386c8c9482953.json new file mode 100644 index 00000000..a81ec9e1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_026/afni_proc/_0x0f44349e272f010e5b6386c8c9482953.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "026" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_026/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_026/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a9a8b7ff402a784d16539964dc5aed279fa48d9c GIT binary patch literal 305 zcmV-10nYv(iwFpS%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zuCjvS&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMCG5U>iHsu^ZmCmJWK{^%ip=80y9_F*LOF!ICj+^{(jn|`Q8h=)^n zNu;v3ce&mrMF>?wMHMAH6!igAS>D~*vvXd1vAuUmQ6+e(sN^@y1NTh`|!zJKrGX$8Z*)u@a`JnnRhoAHzOMNkG7HiQ}@m}YTvrt~BiYDNT1K_Iker%%82Zl|(bm`j_txU`^i zn!@GNsFGMkaxM_kdQOGG_iorl2#{K((Tkg1rV8ku3CNYU34#m<41bMhH+#dQ<3Sw9 z=y}-H%2JE_YXe`oEjWi10V!Ey-c2>2kZ34T4}!3|3g%Kx4a=&cZ2bP@-{!iK>e3KZ zf+X{_U@CSPULplprZA3MmKR_wElTh1ov8#plH4%JND!zBt*t%6OA~;Sa9LK?EdAXR zDy4$d3R4E@WC86?L2W6N6+9scO(!7H*0m?&F=nO|6=nlJo+BWNxF2XJ)D%eI$|8Im zRt$aAo~WdR6pW$zf*`gAO>6SL#Z5+aM$pj-$*83UKNj+PxEc!xd;*#g1Sn{-knYv7 z4Cy2oJQSj&oQT)n-8EK~L`jT{HkQ=qmdGwiHRwt%rFSY5vL>kIh`ywjtvK~yezlSl zsb-Q)L7R~BWqfCvW7?7BQ;<}qD^$B(QjH~q>_j$&pe+M&w^Tw9BSOZqO4FJ~Zmo}m zIiKbUdVWr3l%t35_u{~!kh!JtMoZ9er)qJ(sL>_*n7e~iA$XZR>}W8R zuqMRzVaHU-8Pf7$C(tTv9X{Uf;KPehkwF|<5i+yhZBKvR*~hO>e|obYHJmzV1&8xf z?WHIf{^5$2Up2Q&OpHC)|58cVKitMRw%5J;<_c|KWwX27v_K0oeEG5;)ogBC-p&dh z?_OL*d%)UluXQuz=oGT0b`pAbcWI)F=vz0jNyPmj=5_9^cb{F^AaWHO3l-hW#BpzQ zG(g372(cQ;Zsr6h1PMHhj-tM=61T_4QfVM?oy&nm8#5hO@geWw)@Q=upSCO>-eryeh*)dgr!-%&1CZ`JK8gY&yDbK)Bdj zX*W$nLEmp(vV-2=XhPR2LDzHl-T!hWbY#;~sh+kbs@pQl-+JSAnpr}q9-Git?qea5 z8OPBUKvYS=tquL_o!h{PSCDbyzxv|uKf?2;+a$6!86vS=4>4>=p@DYdd@wi~oIron z&*NSUj}n~K!}K^k865Xd9vxwitIy+)H|PU80K{@GdTBOKdzGKA4vtcHFF67 E04l6^_5c6? literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_026/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_026/afni_proc/_report/report.rst new file mode 100644 index 00000000..be52b85e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_026/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a028 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 026 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 026 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073277 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_026/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_026/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_026/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3071db182dfada9ae5d2fb8b20fa104784977680 GIT binary patch literal 2540 zcmVb!>EBVP5WZ$b?UvcBwQ3Eeo28H3z(TH=_|CNYSd6_;6x1E1 zK-*$bE^ibc0ASp>&&o<0!#a;095aUfEN1W2fCRx^3{{vNQC92-`^r zslIVgZgR;Q~ZYN9pQIB}v1jV-ou^s)wFoOKCIm-f zWkY&c*%061!^rW6BB2Rd+10h@U2S9lFSea=q}((9|c8!dX~Ozfu<8$Aywmq74|Vzt9b( zSvQpfWykEO;M0Yoye?O0urz<|u4=r<(g$bqCwNH=+p2Idp9>}NNYK<;dsoiVTWn>z z0NP!JEzN49-ZZsZs{yqFyQZfLJ!7}92@Aj1rh%Wy$!bqmx@VHI{2>#UG~LYWQqK|!@QA}6Q;JM*m3WFw;4SWo|I@3-=c|3cUq>%cXe2Va#E|;fTYC3k41l=6}G#vO;*pLJhQlH zu{YqdFy=5zIzra`GYL3Zz=6xjy)t6hv3cyU#yd_aEOD3_3Wmc4j+pucjX4!255j~j z8YG-9@RWpu~+Inm|^z(j&)aiqu+!^ym6pL#gGMVqN-uUz zIQ@aE+&slvfskC;SGz{9rkP4>KTE$lr4V6YrFJqS#-M8`=032VoZBpKND}aa8_#Pm z;0&&tbye?ZH6RI>=2V~n^z9mB0399Z;+@y8;QXftp7;9AcfTKy?{Wb>OhK>)3?=v3 zq=Zs!fm`}cS5aWLM`92S#hmMi297+(2WCdB2xDI?RpbpzmW$@Y!6q`x7TPdT@u6&1 zHY>#qj7saaybf6aa#vTolv$kMb~!szTRT~L`z$+he9KL2pjTI$?U!bw*)cmc1Nh+< zr|Jbqj_V>Zbd#au6LIK;1^B0zfsqXTjcUA<>^IHy8CbufSgu~LU9w;d4-DtnsEEj_JQ}GgNUxP z5>Q(zkn`191(bmVUVUbmYSRQd-P0)NpYiC=xSE7JLc7_4Q8(`K#dse|}dut zaZP#Fqo$XQZV&9-h8|OE*Xm|V-8EETwT9B78HHq?ljb*&Zm(si5LI3iH%}8=O3i7( z{_fPYuU;pQUys)A?P5EK&{}EZ{@Uy3Z+^X&S5a>2)|o2GZw60#4Yjq~uA9BC25$Uz z6vrW{iXu=IS~i2g76!RZn2p{I1zPW5cI9auE)Vpku}lramZHwrYevnSiTzW1R+z0T z8KDS^@VSmd^iIT6dW$AAX;mDf+{2G`v+9^xnMr0CZUm6shO*PE*PcNISc#2<_uyT= zF%JHIZfWT!J|eW#s;8=N?&+)!f40t_&!-Qj{{ubD690ucCABPMjZQ4VDF?`+y#V9` zlcA5uVEN$Ub>@P4gYFppsoF6cTKh>&%SMOkm-Qz-eeo@#xK^*jJq~K_PW~bgqIk4@ z=0=!r;pJvch5i3!UTGu@0$22q<8s%zYcS*Nx<0$CuFke<<0WiS6ZYNzSuoKF591M> zN=dpp3P|iD8pcPS2u2r2tLbV8#SX^cvmJj4<)&A$mR-4D!x6iF_-7 zv!#_@f|DVNf8vQ}eX~;9EQ1fnFI}yqpI&tQFo{Y2+;ep>f4(wF4Bv=<+jy`B3vA~9k`RT!$jbcPa_p6uJ;Lq{sXMlFo$0#^Ia_L-qd+jcu!XJLP zE6^;W_};wZ{;}44kU%GX^@%gTnT-x3$B*ybtp`57d;c;7Iv<{;%};r0V?vP$V~jkr zvcE4211BP}i^mua`zxG3S*m}Eb?U1)9|qs+$QfgsSvTqHoyewuFXYNROjvD+zM-rh zM@xyrr%p%-U(RxD0>!*hDvMC-D?t+Hi=KY{u?N!-Tl5UAAHtS!EF(frjBOpH><#l; z&GsF$NMbF|Nh|%#G-Ikrj-OIZ*n$@-LP?M_sI<$lvSaKc-@>%=g#Q8D-;lSt6#xMG C6YWa? literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_026/create_stimuli/_0xb821996742c1404f35791ed54fd21605.json b/Afni_proc_through_nipype/_subject_id_026/create_stimuli/_0xb821996742c1404f35791ed54fd21605.json new file mode 100644 index 00000000..af735340 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_026/create_stimuli/_0xb821996742c1404f35791ed54fd21605.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "026" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_026/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_026/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ec651c029538e1c7aba69635a3990475c4eb4533 GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFMCa}Htk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=V2Gts_y_<1WC$ES literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_026/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_026/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5c8e490cb45ba3d181841dd9431e7b706751a8f3 GIT binary patch literal 1539 zcmV+e2K@OSiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&X?j6B40{mV zhuB*x+p?NA8;YSokfPX@J+u$QQiGr+%3>^$DoHs>ivZh8u>yRX_OSh<{fhmS9a8co zDYB+@g&-2i!}ERT@FRWr>!m;cy>`Jq`b$Q$ql~y2%}7ESaS7|27vmw3g}$^4@8XZ5 z@mq0R)b%`KI3<(oLSCStB3{3zz>j6A~$e>z%mZ= zG%Mr2dlIh6u*f9h8DVI&K(Ht)F-$@!Q89;PEvV^OI_D~N81Hu67;^TfFRwhewSPl62 z0SIB>eMgX#4+%1=8K;kuDWESZi<~hM5Gk=ZLcpzLQ$gNV&>3S9A_#PVLaeZakMZ~| zX!R3fL`86jfM9}qQDC286;B0qXEZfu1I7;+8WJJRl27t`ASf(5?1dp=m<3Z(yPjbIn+enjYBEWi zB;sbqlLX1ctXP-}Y-Ob9JP^#`FzP|%hv)!Pi14#^%c#h#+yuPzlI!J^Giny1+Bge9 zp_h!?7TR8GYZJDC z1V}XAZ-uT^XUn)tx@L<~b>toh|jzf6>=RqfbrOvy222vnx?G z2Iq(EBeXuv1Q9@So`TH_RW^|iNG z<4h7&1JFLE%)ApWWv$zFpHEHkX5{P5!q*$~_0G$;Gb7*5EPOj-zMb>(^=IVk&%)Oq z^Y#Cq?`V!0DG6@_#~pKC)hP?f;Uj@rpVV6$K0pOL$x|lBeVcxxG3~*HADO*Y7aZ-? zULSw;`glxyBu?9Y4kCh8jOceqz2>ayre&o8a^0ub~Su3IR4P zLRrViVpm@>c2Hx*FLxm*y@L8&jjj&AL$hRQo4cl2I<=whohQ_@?uSiOLn<+g)P3Ju{Kp|m&G)Me(e+(q~J=K zwaN)pxhv&O2Vv2drhOas3Ob;0@iJz4FQrPE>iVr-fcsdA`n}@GcmMolp1<`XVm3&_ zb=h9ApjwYRo5ANXF-_FI0`x&L6RO~U(r6ngE=7TnfWtv%e~sx+G=jAQzy ph{Kq`|0wRiDG0>C2noS#bd`d*=B;jv@3-=v`yYMD{>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_026/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_026/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f707742a31627ab6ddb66f0f8d2c1e5c5f29cf57 GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?z|ADgq=(krq`YrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`%(MGtcjF5*7$Bt@`mS*nm zBz~fB?W*g*H%!An=fn-U?wO)_HJABWudC2Dw@+eg$No+NhM!8w8RXb7mmFZ}z z$p^MEDLvwS%jG$7znUg(J}cyl*{vAHEPQuzE5}62GoS;c_;U$&j9w zBsa?q==rtl_tKf1kb{9NXLtryxjuw?Q0rDD`9PGOD6OvC?#fYk>lhtntSG!EL1(!u zKT)LC{?jP@l!wd92N-#Lp_thz6!|lB?iu!g$0R{32U7h7_<=-&k;hN7)5m6U5V?;2kD1!;h(g~!ms3H zwJTLSSCX>)Iv029k`mXY6dnHS_R^Av_cA5j*vn*hbNP~K$DmNMhI^Sz$u;)!ncZBj zgq^s5yQI%SPoEC$X0j!X!HyT>EWy^)ZE-iBE#Y8q1_pb%%x*qc(o_<{AID9hFq{9Fx)C5l$`w45q_yi z%2nk#sGeBcEEh8w&fJ``Yo*p`EA6rj`f!&qwVVsXG*#X;gMndVeqgz2_)ks*LjlI|Irfp2h9O@y zO$2i6!|5WWs@!eUy#1;K33{KEar^bM1ea}@2rl@Us_geBptr2Fuw9r*?bSM%x7s92 zAAk2;%&3Hf0f371zXr%fgmOb5gMDm%<($2ak@2sf`1qJD!@#6*p7IFHU}!imNDg z_5PJAicbcQyEUSfw9 z#c(2k?AEIL-AefxRDc%fD)$Yri*Jm>f4sG{^aGm+DYeq2>YFj0*5NNU_{(v6ZTep` zLOroN%%xsUQ?=p3CAdTYC+!5_*923q>4VD$2d^s!)cfR)k)DcerB-h}F4v>sdH7M~ zaaT(AB7)163Y_Dh=01zx2)L?0+`DojjBnxPMp=aW|D(9lufgK9Ov#q#OZN; zdRSeZ-m0~);TBckzWb32#vAUrKZK`J5Uvg#?At0?#x<`9hPQ{S;i?P84$ffP5$c8= zOwt8znV6)3cwk;SbXTxGI{!<;d$5*F&TD4bbOr@CFF->>=Io z$g7@7^nG~SL)an@(YKv`KOXc0&(<7xwlu>#@MQ4(A9}^}u$ay40EhYOu4d2+ZyUB7 z_&9#u^KO6k4oktl7ad-#E-mS(pIUsor1T9FZOmRkZKZV8R~4YRS-P8ozt3mZsca=R zn~)+CQqy6>B3netC1-q`f`6`_iU<0hW2GF-k!qM*ojQh1Y#jGAw$b|vlu0(V2eUv^ zsk)-!(FTle%t>se)__?0+gChU2|vY(ui~?Gqb8Ht=}cBZBV_xS^YLhnBbQS3>2hXZ za}ywP_tuX6warVxXXxl?&9O1^*C6OXHEi;0IvB5=oNzKTMYthf;U;{AgsqF*l5;Avv$o%yo^Z!RkQXe;~2IAposs`ff zO-cVu)$o%;-n<%qa>$!k!;gkss6gNOv2BceS;BvejkA@@TNc@=Vt?~LvTdy&`|De& zX=NR#CPrJSA?%mPo3<9K=}ig5#y=+k*E4K?W3A%Y2sT;JDKn2CcQWK7!s?t3IXS<< z=QCo?lQ$mmF<-}^=8CyI4`Oe{3H(^~gr8pb+0aEAIYd^@K@%F9?5T#2bP0Otm%J5e w_PwncexN8mF~Rdsi3+ICTLmu12@!~_yC6H^A*0$FBBG1?9|0#or@0&e0HF+u2LJ#7 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_0x8535316d7b3edd0392f612e06a6f297b.json b/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_0x8535316d7b3edd0392f612e06a6f297b.json new file mode 100644 index 00000000..60443c3f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_0x8535316d7b3edd0392f612e06a6f297b.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "027" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..df0a3f6cc7830e904a9acc87e0c65bb10c6eb67f GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVh|b&XS+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=de=&m_y_<1G+7?U literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f2ef39c6ee19ed6704f44c5b4cf8bcdeaeb51a32 GIT binary patch literal 1541 zcmV+g2KxCQiwFo)%z9-4|6guzWMwXJYixQhbZu||tykS{+cp$#)~5Mu)AR@JFziBb zFJf=0{9C8pPz(iv6vejeqP-ZF8U!sJS&Su8B`GIq5n#J1RzP>tF19z=qwFd6Dm$cP zJ4ul>oht;9NFJW=JBJ_X!=Eqx{?D}w_Q^iyEICZTO;`dE*?P9v6Q%OqqVsr16bJp1%#Ahy z?H}@NCDklar#i1Ou0aOWgVWaNl4wB!79p?sfJO@6S4}Tc08a~vp{&+J5kq}1f! zN0P=su~%rj*zC3+bQ+BYhHrYM&=?ew@8oH=1P9L;{?Q7YG++CB#W21|14a<`O0ml%{c#XSeo5A0y&Sh2Rr2AW}q| zyN{EG0106{Nwu2ByA}zLM#MVwLhyzYYByr4lSt@@^+}(4L*R&Y@$q1QE0aVit_FU5 zhlD8dz9S(PBOpdKlk_n-2J~5Jk#Y_mC`IKVL2d<`67sgj&X7u4E6;Pib!HD)JqiZ&oW;qEa4+n818Ah*AZc2-U2#%SNN)u~0Wp-**f=u~z^hT=8 zszp>YWS>wS9t-NucxuXrTeGD({z z;$|YEh^WY{n4d~&Wt7deP%sChppTIskbTN9!cUqFqaw3%Q}Dt|nk~nIGqVuo##ulL z{RsSH^c2d*Buv7~6u5_qpKGG(RT{@;g=mu4bsu}2FEnz5;q*Cyn}?UZ{qz{x3dxm0QRQ+9nk`qXqiOTe3&T?xuD zJV#{ygJQ`(C3-@YLd3xmt}XZXxVxIORvJhM$l;s=UyZ+9~kzYj?LI zxB^{4&;e!Kyd$AhrPp(xADhyek#B1jzO4!0)_M81XXM+Sg>QSpw|!o|of-LdX5rhJ z@a_CJ-|-wXQV`xkj@#zEsxt1w!6Qle0IH3R4nlb%N@K1jecev2cHD!DKQg0N4sZnishEI|p;601Em zuJ8!K3a;z6-BzCVvo$v0LIQyU4-#8Qz0Ix^g}%M5sl1n0!ypVHyIPjqlm2YsS$Tt_ z*+NmrsC*~8WbClU3SaJEP}vF@2tB?!{EE$jrETt*X5rL^x_h2b&$=JhNtr{uB@#?x z{q!|+35#iIYFG=b4!MW(xw(zK&6drW5~;+}b0=HEf?L|+8yjoKO6{VU#?Y^w0>czs zDY8~N!76v9xaklo2g<6a^A3@={BEbYfkYg1jn%@*)J7L!3gfAY=Wf0*abY>{vq zq~W@3uUJ?voATayaKC-O-R%0C{Wkc1qy4ZIbek<`bZIweJ>0}Q&8oG>J6xG&vxH&D r-sGVl0{#!e!J8Z~1`gn(+4w4jam`!Z=HLF6_T7I0L7S7|>JI<_U}W>B literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_report/report.rst new file mode 100644 index 00000000..1622ed0b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_027/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a084 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 027 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 027 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012305 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_027/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_027/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_027/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..50a509ee01c4dda6d7ea2a08fadd38d3abd8e09a GIT binary patch literal 2845 zcmV+&3*z)2iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj*`|=Dgq=xkuqH+rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`j!akS2`c*A{<&l{P%d{Z}F>mJz7=A$j7GZ#Pvr@b9c8= zKXJ5n*>xD0mKmIK6JPT@m>fr|d!eHT#L3^|XvGhmz_d|3T8eHwhJg`{_O?DT;^=@M zxi;dDEi?djecsW0538<+9Mv;DWSI`ad}ZL6s^`198jO559FEi(6JEt({}}0kY8q-z zDDk?Fv;e6XVuqFpWQ@?)5;FC#e-Mwp_*eD6(F$@5g>Z^~FXRLox%geu#9}a{V}Z=ZPdMyX}_J zZ3Bzj=Fo9{WP~2%`|f_Vt~P6}p4#cw_N4tdx(TB;%EIc&ELr-d7DvnZTrNj?+OpEB zG@<9WUeM3xL_vgsJZJhQ*0=$Lx>xVjWMxm1pQ!Dg(&;I2bmI^m^4IQ4%F8&~yp%uA4g!>sWvLDI@Ai>Iz5@|DSO#%xbRQfWZ{=`vf7ht z-AhSXew~Y34Ova+auQH1+oPRauI!mRh1^3?EMqt6 z-zppDpl{5E9_I38ox!f3;5@?NTc|yz~B*sZE6%)baF6d@R>_-iT0nF z9>pm#C}ap*K7(0ET{98SAQv<`)99ZG45l`VSYReoUZ|g9-?LME%%ph2V8md|V4uMn zvlMueQ2s7mmhPFf!DNp~h^|p;6O&TI6N(K6BW%#HV{)R9$8SGIU47C(b8T%<~!}teG8=gZ+;PC=Jqg)vyPoL6$cT6$6wuMy-jL`|j z6U1T_tN z(4cUt(@4{ak>XQ^na->h*#jmEV+PZtYnndaCIN>j99T@hUC<~t4HlcUal#mRB7>jU9v#Y|>AGFH73(^$?$ve-buF|VC)LQF#9DQ=Zz(=5Ajc}%p!B(lM z&q4Jh+Ge?w%Yi<)`=as^p21bMD#@Kj1w_KFxfIBPe7i#xKt~3-_}SqBJpai9&ptf* z>dyoGRnkEorqGcAg_3YqiJ+8PKug~3)@l&#Yu@#Te4=%D1^Kq=fHK3No{__gMWLh% zLSB6^*w)m7u9Z|R|3FZS+r@kdY2ub4Y(W-4+*PG6Q5Fl@E>TBPYd4NQzO0T+N4G)) z)_BU$1*-<+c1@z%V#?*GtOv}=E&kBd8gZZKDW#K7IR>ti%Dl%NQWg@uXXQr~>n}Xi5v%*$!F11%1VBYSKEPed_ z_o=|N5XR&{!r@Wo56Lk{ZYaAAqHaHVy}Au_i^$t$BD5An*6%J}lv?*W90VYzh-tOA;F`e-}{-TxM>=sj8jQcD7HzB;Rb0*JtOpDC);R6$Pn8btHYbo2*IO~M(W z-R!`uyX$N*Za}Hrg9SBv4F!~VqxP&vTrVr#9{BkfM$|^TQdL{ho+5#&RcbAgQAp-n zx%mmC+iNKjtSYIAdl!W*k>;de?_UUea2P&19A(z`km34TMl5Y)4qqI7kx8m3arOSC zDoRcUk9&2gwb!nyy>0_&{BaZn9xn4dNEK2x1J~dNiBE_|4u~A7cW}G%vqRzUV3->HHyRLYo`G|+@I`Fg;9!<$n8qa#m{8&pEUNuasW9DVnGsAEq zfb7<5yS-}V8B~BC8XEU4uuE=?{eQl-wDcpJ2r0Glh3cC#oz>y5Hu&ptdTsh&GeSMF zJIsY%UDx!{!X>ys0H^H~;MWAxuIPiy2M4c92h_Xdj**{A9kt$QKdv<5(P{Ki^>I&5 z_acHT)he9hpyobH-UxVFFxt6vB1~@K5 zj=Vg{=5sl2po=ALx?NO@h3x!iVg{q^5Uz?Ya3VbDRy-e#lQ%%0zrh4F;JmQ@|hi&1)54T zR2`4kVRZeR#Aapb;e v_qJB_fvN_?1fPFOR6%{-C~_hv#2~V6gY1NdjOOTwh%WAbpuwdBxf}oh_c4;- literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_029/afni_proc/_0xe48364c65e06397ae3b8a04b1740225f.json b/Afni_proc_through_nipype/_subject_id_029/afni_proc/_0xe48364c65e06397ae3b8a04b1740225f.json new file mode 100644 index 00000000..df792181 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_029/afni_proc/_0xe48364c65e06397ae3b8a04b1740225f.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "029" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_029/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_029/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..86746a87f1ed181c67f21f3581b13a87ab12c2c1 GIT binary patch literal 305 zcmV-10nYv(iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zuA-=T^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEF=2gqB^8(f&VmRB&6T{1t>qAzYY?y)N zYhdGbLR-c0h`@dN^kxi4_53b|)7`f*JWK{^%ip=80y9_Fm$z5fICj+^^aw{M_W=L^ D@9dhE literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_029/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_029/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fd722edc763a3b3f37841bd142c49cf865516fc3 GIT binary patch literal 1293 zcmV+o1@ihIiwFpR%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}uw{)21J45#r$# zUJ|M7efBN^Ayf$!Rg~~h)CW*yd3R^e&Ux*{_TD8$mEfhKlHV{7@W=4Zf5mur?}JE4 zk=T=N*B*Q3H#5JP`T6?qZ0Eh|aUV%uToe!$ya2%^L?9>OB~=Q>yX&X;_P_a~U;G)@`~C61&2=Qzg(0c{ zNfv3rRO~XmL~^i9VH|fX&%s!l7v9}JQ!#oZxnYo!AW$V*+jxwZrT_)uvM8-t`MWPv zLItT5CJd74658FI+CnHRcuZoNOhKZpYfmN<%uFFl%m#iuM?e&DKh%(`8IZu0W%xL( z8Tzm}QA!C37(?|1L2Nae#^eKwn~ds|prccgQcDefEamrcH4zZ_1T-ZGP|$cO-LGO9 z(n&CQC`3sy6|cR!XRIoSk{B6nEUC_|kX@2$(4|~S@0KQHO;F1beL*c-bL!#ZYAL5u z%_W(EHX-G!_|7%Qv?I%BAgN5&sCK8I8cPV-iEIi%TLt1?p@bktgp8%7rWK9cMjr`t zKFebC{G7}wM-Sf*g|k;>Ze_gIQo2^IBoB#b3TF!;!~)Vacm`<`0;b`|5@dpm-{>Lh zO_}E*L$oNWye~9v)*N|*&k+>Cf8-`1Q$8Zw{iGQ-_VKXgI3Kn%+H6@Hcb=SjbBpWMF(LJ|ICdw{)=&!h}@m9;zu&h;APQSd0 z)BiOiJEVywPD+B|?5s`M9c(B%)Ny6gT*w5k$}o}MxmJ)FRcb81Q@4XnM^_C97yE1N zrfw+c`|V41(EFQp=o%&Hdgi|SU#^6XY#J(6)7C^)TV~l?Z`^J@O9<5y6Z*;nEF?1L zINAb;GS0cRp?|$|TR8D@GKu|HU;OZ+TL{=t4BwE!F!-fvM^8284*ZomIH!yZ?i$0^z5uV%@_wbTAEPP&8fIPQ%`>A0KpU<~77b~28K z$1sfjTl_J>a{Nyj;6Gy=|IgU;tp^OL1V~ZuV!C0NH@QsV+<*O`jH7=5tDO*$a|r+d DSn_TR literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_029/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_029/afni_proc/_report/report.rst new file mode 100644 index 00000000..a7aa7a5e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_029/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a010 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 029 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 029 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073317 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_029/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_029/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_029/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c0ae14b399051f5d6b5adb81639b55bfcc19fff0 GIT binary patch literal 2546 zcmVb!>EBVP@ zz4hK(4*dgq>i^MW|Bb!{Deg+LQ(vMP4S)Og?c4X>zQz7_|GfIQpFUp6|I#mf5*~+G zB7TgcA+j-*28d#bCSe#vah6`!PJ4QoCT^VlnBDnH_Ct0%UAHDUq9pLM=Dn4LxhqRM zS$gZD=_DpDiI1gegu)O8XX*Mu;@dGZ@?(~+MTs914`<_*^wNFk81vcQwWm&&9?Iju z!}3cP55c>E?4u~8RuE#}3Q34v;$te;hd!~wD6p+~90kc}Y|TB9Et(8oVmr2oV-=Mh z8J#MEA5IdX+>hqB|NQrVzuNo9*XbJe9h13}{zfS()3f_OkR_H?WZ_Cq9|g?#Zzi z%96IP7Fb&@DV43#-5loquj>Z;`yIX0Gu2)Ta2zGr4%{Hh()S){hPmHqo4pQrag~hx zAi_=(LaMJHHJVmSZTGEiPd(6%vh*_adbj}5vr&fjRL#=WQn6TMl8#}v>n)Ic9L9q} zv8B88xDLQtM59NC4k*RC$e>!0zl#fHsmvNM z*mz=?YO7(XN9w-S)xf7qC1q2ovS3;MIz7#NlBIVq!0#1$Ir}kox99VH+0yL5Br?At&p7L+xEi%IfP(T+t0H zuS+94`p@N+m5A;YYYy2fmUhdPn(ODFTJy$x#bPZadzIpDxm=?`F5j#-sE*~7v1bh;3yv5}wB;BZHC5}RGiC+pSo(dQXmcqHJE z<9LLYcqZu2L><9CVBQFQ?gX8j!6)2TK`FFnTpmm~7GpaTwIV3J;&_S$U!lQ+4un9x zu)=XgoK9#=g257h7cZfo2(x({Bg*5CJONI)nW1ZQ{Rt7|BIY(n?h-m2&TKx@Z0aoW zvEZ34M2o$lkcEkWdD0QG7oSPM$r27-LGD!$$HWma;f+^ zTpol8T{dVqTjCiFho_A{!IyV;r&#;?%ToZ1^3@UtuETLeM$1NsqIlVe@XIBp({PDn zk7Fl%H7YoS#%Cqs1c^O7tHA_5o}Ouo1K^`2c0==wkI<%Qf*0)tHQ4X>dTQGgs6n%x zAElRj7M%XTRc@SPtw2cLJJfn+zph(q`!GvCJEss~V5LqnC&r*_s@5T}o}AmPZWW8b z53WD1KY=s2VKp?PtJi@fTvoB?zVpo?ETe+K72JMg^cFTVN1kbaX3*kKBS z4PYp_&lV$;S{vLl_Is)dvwbTE(MZm@j%?z{BR()QYDXCRa=EH(*@{xKc81%?s@Q1D zLZuzWs%}?HTNsr$9c2@;0OYQr^%%1_!|if*q_y|6^wW#%i1@afI6$x7Z*`tp%~sdy z)=l7tyMn40oDkPVa_A-_;!}C#g$4L$mw~YY{q&f|*egI+j9eE39s6h=q@kMqF3;Pq zYLK9tB8}VE>jo^_DkEI*GiTW!%z$rs1!c3kpxWy?sCT+7OP_xK{gPn1m{N8Zk?45i ztNeyz=;pr8*zISpXScEKGJ3nph}IdB_3QJCqV^8qA^1vKIIp&tV8 ze+MG^fR}*Q)_|O^&nut;B=G%5rlqwkpwoSwasD}v{!pk%xFd90T^M!!wpfgJpj2)^ zK&`%R0u$HOM}1~`)$H}b&Zp30>79DRYHJ6k2CUXp+bpAy%y){58%VF;HZ_PUuZbJy zi7lh%tYCkCZrW$hlY7s{8@CUz6GUjEyme>e`QsPA-N>sbH+Azu73DXB`~9ZYKIk;8 zeoqHCem9Qekk(`ws0u5aVc*%&p8Na||~E$Zk{J?>Fj?paSf~ zLDF~NUA{4n{{GI&%Fld6SgF;{Ro}wXc^&>@oxhwY_xr~3Tf}g^(SUm#)Z7>O zi$I9t@!o|SVZMb|TXhZg|0j8+(J%;H*+aw?u5;I5#`$%9epy|gZ`I~g*rFEfyZ^Ib zG6|34F`P?0P&8=eTpm&fbrdI-f1#^AG~=)_NEg{rhEvA2|BQ5xFiEoru0 zwW^iE;%7?YabX0jVk=S^4!X54!jt^*=gYTv{DC}2*dY;n<(XxFO)p27dh8H=Hy94{ z&NzvDJAkvLonC>HA&P(IiASkawm0EIy>|N2)lLTKW#WfPO!McS_lJw;D~rbPjrf;? zha0dkx9!05;3&Sk5#^6&)B>08ZY-Xk?ru0JMoe_4c69^(h{rwyteZVX!TFI(7utIp zw*VFX_`@xUWf8@<7aey_wHAXUHu1B!ocYCkbQlpozJ03^`1sbHs}Sg7c$T)_=B14b zWiE^{@~rCNp&|`QL}M3EFdX*p3I1fM@ix|(ukvCTe6J%i!49`>vDZ79PXS-ZwMCe) z+C^oDJ?br@WyIlaCuD>#XE_dqV%{oOWT^GEAc^xuPd|UtgK3Cuc7`^NVM`F(j1Y;j zV}O*uVP2~{KCwzP*7KaS(+@2xW{ULmDb<24c&RFtB_)GOy9z5i!9MbB%qma%AC`{Q IKpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zc>OvGZtB6g>!= zgLhj;`-~m82#NrPgP^T@NDf7v1;Ld@D|#hTA*r>Uz(9Km8bG(IhxQ-!SM;xRNNIO% z2X35h1j7=^;e6i=KXQk^T>0all}q-?zThl5O2AE60ukfj0`Hp_7e1&wyRwV#{P(=} zYkr(pvsuDv40(3llRz~PrCFRtEYB86$Usu*g-3bz+2epSl1SkZ9ZHe*LsFpR*=54~ zJiB#zx=S0)MxM?0r~=|MnP)R@o?Z0>4_M#g&PAe+w2H>{10e@NBo0UfLx_;%)7_mP z^K2>AEK+AWR~XkI1M0z9YjjDpAOVYz*K9x|h3{q4ixj}qLSiV_>!FCDz8^s#r0yX} zW1!e8w4HBmv>$dF4WzzkdZo}96q4`cX|@1|;2|NwE$8JjVhIWQK@wV~2F{aIg?<_* zMcnsJ!__&Ji6SBaPDTrai?S5rBoc!T1txO=lL$)FILWiy`=W;tai&7>i5UngE6(6G1W;Vbi{h3N4)`X#Jc>r-^Z0nq7+vHKfXso z6nWp35Q`xYqndI07@Pq5ytGI;2M?5@@`xa}f=vl|M`LG5rB5)>0r9D(3O~lsbQc#Ozv7j^Q~X z^PgVLU%KQ&;G8~N?EbE*w6~9%Tz8D7Os;ERFFN?#E3KX8wo^`U%mk+xX0h3=PC~g) zm4knY@7RGrir5j#HF_9X?F+_@jY#&bjUNzHQqy^avs^1!PYtU$S{;#CcPdEi{_Eqq ziKJe96BPa6{tr){o7wjpO@gNu*UHsuSaAzsPr@lbYBl_X>4__B4FkW4`T+^6gB?w=)gj&X{lK zzxj^ln300;HgeoC=T(()9}XW$%KK1ltalK~6Hyv-HSXK!)M_U^xcDQp*XW|7y~^w3 zFJB*ziI2pI9=g_Q&5~N{t~>7z8CPrFnuBu$_-+^qN57{~&vNa84>wL)e z`H<~tAlv6dcFu?F{0~T@kLlE4JbWZI7*`i1{gKr0!I0Cd;e#QkSHpWDPbm;9==U6B zwmkjH8aKDk9$Dt3vi?SoIkwhb=(TmHP}YtqRMwpk&r6U+>$I9KO28U_OackkRk~W) z798-9#WJY$h*ff6b_^J*A`A!N&C$vy7R=AM-|IGW8B zb&Se)vn$39Ypn3)E(Vn?k-pHQtHW>DELhs+u4xudZK!(}3H7}DVV#sY#9Jc4B-YPf zGZ(O!mZpZa!0L#5IG>x_*xPK;j46>yEIoI#1uVFwExxg_dZN@WifIge!aDc!w*~Y?d$#*_%A{ nL%{z**ng7)#=rr5G#g!|Fs@mv+x)vv)1Lb;=J?Fj>JI<_UfKX0 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_029/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_029/create_stimuli/_report/report.rst new file mode 100644 index 00000000..13fed95b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_029/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a010 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 029 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 029 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012369 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_029/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_029/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_029/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..96f1959278118eaa5f5324bf41dd595ade1c12d9 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=xQ4(DxrbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B1-sR=oa5I9Uk&IggnYsS(aK&wNY-CYt>F1ePy}2 zX7Qn8PD&5?!1j1f+O1|uo6ie{&HQ=-lkry#ga6%Dz12~wod)2*50UO#t{+G5JeFi- zx7AcSEnsom95}9zjL?I8-`%g&)JC=0Rok8Fp0poFH(}I9Sy(-pB}-pd<7hFT%jHN< zOIDiY2K4;a3wqg{D2OnS=S<(k8rO$V_iEj$tn5khW3|;)+Fd1%ZXBY6oE=AZWaun+ zmB*^w+IMYN|BUuP$6Fk&!f zu+LzPSqeN!D1VnOOZQCLV6w*~MAs;_u}P`nF~tUh5jJSpk=dV>CalF9Fc{H>&5qb} zLjz`h&-PO6^=yg<4E87v23m?IjQxbQVf+K84bPz@@MsR7QLc=Ur%!0VJEE9f+uW)J z#^{9NF=DtvgD%=-7HWG1iVJKwrZIARDgGu%p%XIEY>G8Z*YDd598ouYOQ-fDlj&zM z^*OLoXizxOX{5>6NbxDdOlMY$>^_r)5rb*cHBFywlYqk%_ARF0E@%{+28&JFIAM%D zk-^lFI~b(cr{-gA#F)^2*9&plz}_Uq6YTZR8-InJ_rZ3q^u_1r0A%G!ie1Z~*f$4h z!_)jAZTRRo#dz$cIIt-;ypuuJFmW*7!v+ZT{=5b0aL{j+ znKan#b~@Fj!bpQ!GkKKW?5Obc2d#4Nf^-Ez^3F4qy03?kvyObTQ{zTKe;pe=)3{Os@mp8w>5 zXCEGY`IkQaGU*@>Q|QQmLPg74P~3KG8b7f_&R_K$&4s&&c7$ zqOhq8LSEhOZ)s{l*EUrxzb&Z6tzv!?Y2t<TBPb2pAYzO0T+ zN4G))4*4JvS(N^1K1@z$q#?*GtOv}=E&k6^ogZY8&W#Ktkt%Q9THMIyN1XR5N_n}FW3v%*GkCbgIAVBTtz zEPedlcd5X%5XR&{!r@`&kI6Adt}DBBqHaHVwYm*-i^$tWBDCg2*6%J}lxpW090VYz zr97A4g6q7*tOA;F`lvqx-TxM>=sj8jQd0tPzC5jf0*JtOpDL=qPTUb@T^J zO~M(W)o8=4yQ^$5u0g5Xg9SCZbp@1oz529ETrVn}F8KKvM$~$%Tv40So+5#&RjN&r zQAp-nx!DP%(`_metSYIAdl!W*k>;de?_UUea2P&39A;Mckm34TM%-M>96mq#Lnf)B z#MS$kswg=bJnGh@=3c9!b~|;T@uy)Bc(}y#AXP}&^j(ANCq5w>IUsVR-ofqClL{Oj z$Vp?7IEGt_kgt@LvO4W{F5I)+^t$4q<|7`q>%h}acr+nLX*}&M@gpr^c-1hij;WVv z&lJOn0J2-F?shBXr%(ZUXlUFwz%IEl_W$|T!oq7d5mIWU3)MGcI<3QBZSdFQ^vd+V zVuX5PcbE&kx~}QNxl3??08ZN}z^@3VUC{@Z4-Q_J4ybp@9V0)H+G?%ddQ`5*!_(-a z%A>BF?nMNbD-}4$LCt-Zyb7mPQ((_jcsr7&6^x;St&vWzQU5e#n*m!oA5iXEK6wjz=`mnTk?D~O5Ol{{swP=AkRKB zOrN~!nZ(~mH+_U{@(_L7?e~+xAoLyGg=b4Mx&==LKX~0M9&vjkUjPp0ue+LIFS=vgFF-NN5-0Ijh9b)5p$BB*6SD{SunH`t~ zno2WN9gkLFboHFXdS(TPWxsvNla=sOtOgoB$u?>VnVrq$RWw3QfVlvVRycAgwSX>X z2G-U9B5!BqFj!f;5PXIX4pv+TqhJMs4m8stzm|*f%Fz+0FjItU@)fSbS4jB^Z^~D^ zCSUP7e8rTn_@;ad*W_Ec4&Oq`xA1zt=X1!&lyC(&?)k9cteTF2COf|74A5$By#S#= zlZCc})4pP1ZH@In9uEh(BXD%E^6kqnzI~YzKQB)3aFkfxPe|QATF+b_BChTqtz}>? z37G+E=Mggy^5{~?{M8|at3wLc2`OA1QoK5(c%6{q)gcR4hb;UbAxV8)uNsJlU#J?0 zt2ZV63su9<4tf1*_}L+^UkyJQa;^dc_ouco@?{DCIWf*xE^b+5r%L>t|B-F${$X%` zJu|JWJ3p!=y5#&xz*d|}KW^~BO z`3*jw5p$lr@koyO1_m{^DHeDTdrNK@B&sL+^s3K>9@5DnvT_QV(9{)QGXrGE&`ZDM zEy=U*ZO!NdRSk#pt literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_030/afni_proc/_0x946474cb872f3497e0a44b107f0aeecf.json b/Afni_proc_through_nipype/_subject_id_030/afni_proc/_0x946474cb872f3497e0a44b107f0aeecf.json new file mode 100644 index 00000000..eed9e673 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_030/afni_proc/_0x946474cb872f3497e0a44b107f0aeecf.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "030" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_030/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_030/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..dd23f2e4e83fbdd44f257c5435c90440c8952464 GIT binary patch literal 305 zcmV-10nYv(iwFpV%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zx}uC_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~c+Q`r^`P>xZ$i zx&h~QYTAB6S>IiKZnLV@R#Km*L9yRTrfL8$Cz9X(-Ntg|^XyqG$ckAEXUQJJ3;xg& z@LE7m^((BXHI8TliWqJ{a0Tu_#G~keN^-YY+*B>M&I{Oph~eTOPYkb9t`AvpvS9|6 zZ-9;032ha}BLes7)0;7z)bl!q^ZmCmJWd8`%ip=80y9_F*Z1>V9J}fdUZ%vN_W=L^ D#(|m9 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_030/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_030/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..646f229bfd508fbc73b11a1ec0585cb1f0b0411a GIT binary patch literal 1293 zcmV+o1@ihIiwFpV%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpG-KznS^X%ulPov(0zv$9*7qc~L@C@)87>5P=+pmsA-T?^aLo?SJzJKl@9+ z@79Q<1$ehfbID1mRqEXqVH`BoDZB9Qy(cpPu}rIK#7JYnyBmaO-rb(xjA%SK_HHAg z21v%WcPo*1H&Z2ZKB}#)3pGM8&Eob{>2WU9ln9uBKxofSpMK-rc4fIRS2pi(X+h^S zg{!AgC9#U+Tp*;ioC<^Qov@1#Ahk-P7q`1i70^8skSlEy1Q`w({uVH`ItFThw@l-@l!Qwe$`xnYozAW#)rTlp9-jR8u+Wm#FX@OM|J zlnPQSOc|u(IkbBPwWUy2@Ps5Z9fL$$H=c|}n3+;km<{}Rj({lQex#vL6Ci;r^YC$4 zGW33XqLLC)Fox<2g4h}~t;vTLHyPC#K}W|Vqm~-{n9CpFY9t`=31~(TprFZIx?9IG zq?2IqP>7OpEM9we-&j==B{4GESW=%`AiE;fpewnM-m6T=nxK{=`jT3<Wy@ttapX-Ae%KvJ15QSEL?HI@*v6WJ7kwg|-iQVBtf2pP*NO=}vtl|v-V z`6N%!^K&w#96fxu7Y7!F%q@&JS}M0yD9J-2+QL~!2#J7f37$dPgn()Ip#qsA<5zmf zdQ%le$Pg{dI`1=$YYj&(k^FUCO(+)Bdhakk8DJS0G)d<5=G|V~QRZ7F3MIqrp_d znh@K^9aAM|NXy5aK&!BI@X1yOA6|rt4C2s=keT&vd-}7^9)5lF2eUia?nYqWu-&F*5;0xihk<;%mUW^>!}wwLgD z_u@L*1J-VPt(zf7Cy*_)lhC`n3lm*L-@1uSB0fS=Zp^&(?$c`kTE0KXt3&G?I-~r|6#BCL?8MJ@gk`HhAmhX;?O@Yo}jc z$Lar?kzLY86DK9XaCVob>?Sr89qPEYX)a`nS7n$;Z{1dq8C7X4zf-q~O-I)a2p79c z?WSoc==+^3cF_Azxj%->g)zj8Qbz5fn8*kipGfN27BNO_{Lo6gR z=~|h7i+!Kk3E8Jf;9?jytu)hB#n=T!=yJDWWzY^!4QW1{A8H) zkD;IVH~3?M75JYqz<uA&uW^~dx&P|dDvAC9RWKtza|r+d D^xAjX literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_030/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_030/afni_proc/_report/report.rst new file mode 100644 index 00000000..cd137b4c --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_030/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a068 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 030 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 030 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.07302 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_030/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_030/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_030/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7e103cbe40fb938fdced9b0a5a5b19f0dbbfa41f GIT binary patch literal 2541 zcmV`niwFpV%z9-4|8iw>b!>EBVPeV_NvHkU8Tg;;R> z7)L{7VIm9=!2(IbFo@zTy{?}0^e{=>IQuEP^Ox+$Y%AR`CpaQb;AhPTD+_a%mUgoA z_IcAu?6^*RBupa|hA=owH}(_Xim8#GvUEL4{MhkuHeN|DK7@`jo9!cOYG>(zI1W54 zzIO2tyc>u6{uy@uTmCX#$G&Y)chWCqNiG$Na-mo@r2Dl}r6!dGxqNTCvYk=2 zi4(y{>gGlLk)ml?dPy8Oz6hxtLke|8*VRtjY}MQKrqavO@7=&cu9*1FtoA^Ry-*a? zJ*7a~Vo@$vi+6LF_rI$f?C*87PR~$!Ex>V8h?@Zz#F@`DK5 zNeHRFe%NT5Ev4NzyFF!JJ`qNk&D^|_Lzt3^qYsHCGC?RpC&pNH|FAeH12 zbQA?AatIQJFx8D_U(tJk;x?ib^Z}3s%_#=_f1g-Du+EcIti3X)eoM&f9+&qc!J9Vhq<-=B|q3)|nPX`Ad zINq)^NN8XUMSpB`y5=I!;71-91gJDrqXP-QmfNM)eB=jN`ce03BTGL%T}|MK)@jaz z-eAJdXx>hia4{8|;s)PqJnO>P^(i`Xkq_m1@rj|S4FR*;T=(i$!@`uFzm<{yII?c$TGi&*e|>k{GsC;czh*O5(AgsrAmjoTZ^H^mV0oE-9<;GI2@M&Acx4 z?C?KpD=QJ%m1?%LD;0N2<(li~pi=Y3yOLB3o!zpuQ!3R+kjuAg_6Zo+^R6AKShF}B zL^&=}?9I(qcgn>YNp=@tv|EyP%B7lx=oIlZZ_2d*K$!v(=bGgjp5?>k+P6ZCq8t|~ z9vv?+iYyMlW;%%JxMRfdahbzo4tq=~cG=)~#^K|D;VP3KJ0ZhMWHZP)>_!~sAv4X* zcnrB*|Za9xF}7CB^+@Wvxdj_c&EBX-1vbPE^#>U7#?vrWH=t7 zC7yBmGhTcJl~W3>8IuPShWXe|MJ;nmZy26p&R1x#paU*YFDx@$ z=BMKtlVGsKZ{sEO6K*z-VMJK`k;lOaGc$B8ray5wIggpmk-LO8gENcGG@IH>e8hQX zanWLL$Yo)|VU~1+ti@*%aI%C$my>&C#IR%Y*kO$~oKjfgFf$a4MoSzq^(mTgDoh@P z30XEsI9uWw35O?*Kf#xG=e|_?_L~y`jPlJA2d>R<%NKC|(*w_Y`Rcnr49R!7fF7nG*aU`> z`)pD|skXr_eXpk|Fx&TH5RJr~>xc%9JjVxSMyv>9Uo2JRswK-s^ZxK2GRqdKny7eR zHY@ik#VSUnZCeIcIyW4 z!yQi53yvMvMPleCBgZG=$O{YbPcH*w8T!c)iLqCJt{Ay420HfHJV;$J`dyZ{U)3N% zpYSwpPpj*&Y^#)T!Oxs!e>?-e~_h6mZxhS9sw-4e{6 z=wns_YFh+WGLXQlPYhFSnLwxe8s+?R9{nj-lW<4qw7M|r`W9b|cc4^mKtQd& zW&jh{lqY>^de!Ll!Ol(SF||&;VYbzMLj_iAC~cZiNah7;aRce~+lC5JgHVRpV_m* zd|k;HMOcK-bsVBMBA(G(G?`0l;soU$zOS2A$K1+XGRJTufb2Gvy?&$q1S-HvY$Ut| z@A8dt`1cDdD?jrQp`}(kQ+*3h=XLmtb^dZby)*sq=wX)lFU%RKWg%;PY6;FbK$h(# zAn%wAy+;Pi2N$n%7u4%?$LNpMuG!Q&59?YsK1#o6JnZYsZxO}yMg#6~P;t6&J(cdmT9wY%}X7eZ3Re6!3*yUxW#(EtTja z)=9LKIDF`Yl-RmFhS;KKXyXXBgku>Ia$;=jAZ2fu z*Xp+Km_-t6c~08tr=}TGMRM|#YQh%0SP@EsoI#~shLxRQANdxhl_&fU>V*0uxfK8a D{*e5} literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_0x8f5cb2646fc2fa8424e53b22f26bb048.json b/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_0x8f5cb2646fc2fa8424e53b22f26bb048.json new file mode 100644 index 00000000..7d73c797 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_0x8f5cb2646fc2fa8424e53b22f26bb048.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "030" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d64b84aad99cea8c424c9255e01701c2d857c9b8 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tIOy7oL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=+E(^P_y_<1zBwXE literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5bcf7fe0996807419aae5d5b07e8d5dd4d11d9fb GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf)d+cp$!)~5Mt)AR%FFzi8a zA7XE*Y|E~fZ77BUL5gBq_Ru~IOAUgOD2uT~swCwkEdp#W#RBkc+Qasb_AB;Rc1g*0 zk|JwbR|q1Jyu9b!%R~C|*DHVid*hOQ^yiFbhZ%7*nvsMu;u1D6FUCV63w>n=-o+n9 zS#b znw4?iKMmJpSY#6Mj4(7_AXt=@7$%{VsF*`CmmrBmDx7A8zO%=Dh=@@clMtB!o&(z4 zLzpxqBtw*Cxsua(*AgD!1X+hcOoHKr+N~6;Ea57lKJsxeBn+@FKOPKVWwIoP)qsy5 zfDi`W_XJ7#h#;eyN%|-`0rXjAkuydDA|)1w2)LDOD#*JEI%6zC1c44wh!vLbF&V!D ztwBPJs0a=b5KOQ?8C|ovG|Pz~c`yhg*)Vwpa+8W@h%?BHkP2D5DYG-9f{2_=M{niQ ztXhH<1@;+M@rj`Bji=^p$oM`(BO;_(@@ane1%+jYy)YsSv*3i(Zf01(W&(ABnoQEB ziMXBdBtbGUD;DMgTN&v&4+L{CihPLt0PSN65q{Ec85Nn8n}U~Ka=n~#M$JN08)pG1 z_z4M5(32n=lQ2PE=7a^H__;QyUgl|PRtRUAUH7ra`BEcCAbz{AMi@5KLfdP7-Ggl) z0TNC2TcK;!*)r*puGykg9lHC%xHcg#Zs#np0ZvYttCdRQU-ZrK=u^}6EF;0x>{?Wf z!8sy|pInamtJh&-ScM7$Hzn+j#`DTr1c>j_NR4ACuT{YC!D4 z>!YTLq*;C=5dHAMk58VP*$-N61g92L(p7R)b4y`Q!>K+R4frJ4quL8qYn%bEzIJzO zoJpc;06M^wnRmjato8fu^Al6N8Top%@bxBqy^Heg%*eMh3*XL!Z|9hNuDw}>FaeHjguZ+_>tLd^}*3@ z?e)0K0cvAJ2O#@zLAK9_^v;L$W`Xq1 zhwPjW*_j2hb3SDEe8}zxKpK6_rUv8TBdNi-x+v+7q=xr~oLvp?4LQ3S-U)e1flxue z;~2B$>6g~Hy><4;GAEVwH-5~qwf;h_Z#bp0woRe3;lyxW5>d8JtLdTytntSrkU?Fg z>a{J-2pqCd22~!RN^W(aDq9@WDfG7&DC?WXya~k`RMt3YhO*Uaf7R(Wp#()p38?nu zxWYpSD!888alIn<^%@;8E(jtA0m*D3b*!(Ig}%M5$)aD><0y`azFw8wlYYJMth&Kr zy-?OMve?mAj2+Zi@yi_uO0S>+SL3V0@6aq++UAaFmQHP`yB7)dy!&AjRXK!PB7!6~ z&t5Z^pqLh>hPA-*kOeTGncLX0UN&Qr=K@O49lZnvx3I-GG}ca(+GQ~fq2D+I1}V5! zX037pRqjf8(?M7aq-o!Uy@K{BT)d1~?x$2KQ(YhH1-Or;Xy6x5zWe7d^ZczB5wk%W zuFLj{1?93S@14!)Vc>hcZZ8VF2yb@1E_vATJumWlzTfJ?U3k^n!yT?lvsuD8rf-Tk oj0yaY;=!AOKn#qK5X{C`DTr&{>bCg)IQQNE08uCAs_G8_0JZMwk^lez literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_report/report.rst new file mode 100644 index 00000000..03b13f27 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_030/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a068 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 030 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 030 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012212 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_030/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_030/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_030/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ffc6f2b17b352b650cc79491c386edc7eba0efd1 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E64{cSIChe0CuuSnj?&grDgqz~Q4(DxrbUY8n13cfTaKi`fWVT3guh?`ic;cE zdzl&B1-Vyfe;;?s&^guNY zRmcmx?jtQgDu$S$Wda!^^tFUc_3Izr{>Oj*D?N;skYgx>Q}jDg5cAobn9WIwuwBe= z6mt@{EeJVjD<)kavFrCyJtTYS%Sc*y4v@+enixz=i`jZ(8zt#sn(Ys=L& ziw_-hTztp}w#Rd|-Ab0U`J5}jYD)G*l~16hR#w~ zd92E<-6wJM84s724>9uj!ltlY*yK;pnQuA+9+Lzu?aB4$;0F>7Mm|5uP9IxI65;pM zBxbkw8?AC}uU6^EK=7ey@0h)iEUa9SpD3-iI?XfiNEQYQtdwg?3le@O@k_ipn&ZaN zJMHJ?IC_7+q<~1hRh=w)nRb3e@;1AK(@-?TJ$6)i(T2H8r`nmNIZ(4Vo+|a)BS_(7 zS!S;w@!tm7JeMa8m@L1Ll}e+mR`x5qYP$xUZsf!bu|O6}^4IFrloxTdekp&P9R_f3 zW%sACv@jTQ^;)U5C&tkS^vZMqv^o`fX_l+yhFUK*t57R&>vUzVtL$Z=j29ob$igq> zWVtI>I+v2N_$n8->av>Dr5x}7`{u%ek9UNkVeSaI2YIPzISD8f?ct6f6g_iC5+3C9 zMeHX18%1LVdd6hvfsiZe40inl=LohZZZ{uDxgrjCreLs>7amCYqOOq;!D-SIi!K0( z030NiQW1@l>0x z+JA0(6sO3bkRfdO3}zv9%|twhT+rxDqjxScnA*%^k(o?+pCVNambd6FwH7PZGO0mIUgbf;YWcH_}32X5N3`VqJvm^H0 z(14lWv%M61J)7bIgFT9aftKPiV?SnX82^B2!*eJJJetGjlq+N8>0{dOjwoi=Hn(b# zF*>366fs<(K^N^Z3$;CoVu=mMG)8VO#oq=gbV4SYO|gdQ`hA;$BkHDa>C}E?GW{&3 zJ_l9`4GPCPjWj+rQhdfR)0x#GyU%1{#9*3qP1C2_B;YWGeT(V0C5>X!V6jOXCybGo zXE1f-4hAXqsrjikVoYei>xDRNU~in_G4}ei#$RCPeXuPQzx-kbKvtfl*tHCbeRGgD zJk1Z%hL4U@j8DB32R6lqcQVKtCJyF%*Z`s4pSK_#4mzD{vlC#`VuztQ#}V3C8=+}? zDh+nKold2xFw&sfOdh2-J1RW=L95)mAYDO_y!))yQM#qNT4_Fuqfajw_y{zt5l+-G z*eVtE8K|B_+bnJh0_cOg&r2`h8C+J&HMw0cfk?PDl>%9iZ+EByXv-iMKR-Nx=RbMi z*@s78{kf07N;=5H6go1XP!i565tOwi(2{pMl?p`rns@yHpJ*LkLB4G|pv*9+XXNnt zg1D)RVou%eZ)vKeYn!T;+ZNTrRw1{EwETu4Za@}5+?8t`qAcdLU80U^&D}Wqy@Wn;(Af(bivOjFrwC5rLx+r?I|@-wMwN) zG78CjOPHQOI^CvHgHeR=b@#(D>sp2s~Wmd5|ikZ2GRj^%I{EjT{g;Qt#k)=}8$5 z59Fk=NF2j0MaY*+N=cn`I~VR*ZgO4mQ1cNF+jZb+Cp;RHqcooM7Wt8uFuZD*R>#E4 zq-TQRL;%^XR(8AP(o?7aJv21#TVR*m82kTxYhmFvn+Pej;)Uv)GM&`nuQvGWae8I? zUok>Gu{+F#UR~Gp;oK#-Kme!h6yR3`)2`@)%LfOqO9#}u0$3e|~p1cw8v|zY%=|q^^!i$Yk4etMslS;#$>sq|6nHF=Ly8{s? z$Mwl!b$N2DR=LAT`jXq3DG`r-}V070I8 zWSBmA)iaKNh;I4_+vFkoj@$1igF)y!x(m;iW^@al41VyMS3Fx=o7)M8+3T)m*o$tO zju!?vdEN6~fBFtf#epC1pD!;g7^t6_f4ijiO$)6~UqG#A3@y-9ptx4Noq@kErq-EU zIWwJ*Armr_VbdmCM8+d$e4K%Qo{>og`o3#tT+ESbm{}dWrbBF8?>MnB`YM!3F0%u( zKvQXks^ifrjIPc|tY=n$SoXV@JXr}p!D^u4lWe1^kl9%wr=k&Z0?Y+?w8D`~sReX7 zQ?RxM5P3T*hr!C)h2T?kaIoS!7zHa3bfB3I`L$e(SB{Q2g_$B=ldpIkzGBK(d{e&p zYx2!shi^XRn}1Wj(lz-?*WoLre5Kd(oy{R56T)TSxaY%$vuZj98t?d;GeE1tx&)y> zlZCc})4qbVw#IrOkB0-{2pk=(eE0Ip?_Q?FXT=E~juNZ;390)>>zT_##MS+ywG7N9 zAu~X27BK@Mk1mDGT^&-qI;41=kmA)L^H+z=UngY#>X6daA*KH#B&m< z;PV+V=gAw7rhExCm literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_032/create_stimuli/_0xe5d7c01301c9bbcd5164eceded2c27f3.json b/Afni_proc_through_nipype/_subject_id_032/create_stimuli/_0xe5d7c01301c9bbcd5164eceded2c27f3.json new file mode 100644 index 00000000..6778b0b4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_032/create_stimuli/_0xe5d7c01301c9bbcd5164eceded2c27f3.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "032" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_032/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_032/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..be77c3a2116ce2a7f18a11b254c84e1c9b195196 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tIO^JqL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=ukKkM_y_<1y$K=n literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_032/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_032/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1b269e4b7688bc2d7a086756d0e092d02b905c78 GIT binary patch literal 1536 zcmV+b2LJgViwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b6gLzmg^(M8a1m5hA4bbV zcH1y}B`K{?g%ky$w&?>rR1GW3GvnEDcE%oT&u#*W)V`o1`K9Xgq5Vhw75ytc_RLq z$o0+B(_P%yY2|v^!;+wYid-+axxVak7Sf)@U5a@RXcdjCLoWJZ%!eo@0}=ztC;NLp z=6WqtG?p`+*C_(rp6L~GM0_B`ndQ7*Ml47Qet?7$nSt{KmQj!; zX%Y9`({Oc$MJf?b2}7d=f<;-2U=m7*iZ~>51(Hal!bzIzTZi0(h!~X-36L4!8K5oP zhe>@xQbbvrDLILEBj!Gik#*=t#P5%(-AJ%XW3FQAArJd~!T{^yqh1eICXF*#4fyyT z2w~uTN05XM2r{Y}r;m~;pwCK+j4|R9DX}<4z^!0YLf%%;8DSA12(*s^tgwWS@%Sxh z^Wv(P**{x2B zS%9Sje`(;@fl%1%8U(953NlQB2ZG(c?h#yD_CC+sxVp|k=Sx7K;fDL-m8_$2AW%5znz&48C*2L~0- zBvBOr?P1EyJLXbWx?T6#)Rfkod|UJIZH@W1&dawwC*SrweA{Eb?ep^O%*nSi58uw1 zZ|DE{j^>z=g77YI+%xA@m9l^wJrtPrNVT!m0VtoxS;FMFZ@W{gO?z1xE*! zS0`V*IvEomi4#0@t<|O_wb|Wr-X1cpHoG+k<{C%`sErUEfb6~n**qJvbv9&c9>~_& zknOV}+w(xS&xY)r4cYksNTZMW)L=Y(BsCaU=Oz7-)bQSr^Q+;#A?H`aJ0VXg5Gv?* z9AmaT{n8pYcV~|*b5dD2?n$AnW8h=azDb!V} zTG{1{z#$7|Q0Wn>y9(N~H>-`>__-p#8~7)3;{mnHYOUoSl^Z*W*I z6?Kfv_w^-X2Q^moVjqIiYpBQ7=<4trGz*rtxo?_Oghfx9_HEcJXh`AWWy~@!p-P$R`i)+K`&fc{UjF#ofBrJh-+CD_8>Hd7 zYOh#OE}Qb+A@_qFztLcJD-s_w|42+m*\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_032/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_032/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b580f0fc9eac5ac91c177d6969d08043a1d79639 GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?%_bDgq=3Q8HB}rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`5l zL!9XZ$nR@9!dy?oh{K`hxqc8wcct@@4#J@o#6QMs|A=44tI@JLLOwQKC$2qQn7O-^ z`iY~J%dW$~w9Md?8~d8)!Q?nv-U}T)AWnXaqa{Cd0@FtEa3Q+!2nL2U+S~frh@%63 z=-P-swoo6~^>|0~J*>JOa#YXskYzdu^X0x{s-ExaYB2QOa4=M-On4QCyZ`gDCC4fHZNrJqLO=1Dr}VU zBKKfJ+}aRhVm2~;m`S+akRMm;^*Fl4_e_U}d=4Rxa#fb4R#R=1o8?-y6GvZLuC7^p z=$MnzLq4!Qo|AT~S<>e7g1DJqPhc|ss$uZI+p4!ZO10Af9QYy9UCZ_3=$*%stn9X$ zN~Z-ZZkq$g^^p;Jkng+um73b9HoI!OQ{9vH1oMI zv)q85-+MtX3pp#mK%O&w6Kh-_Lfxx%tFp2u$&b}mS7~>ZIJ$9&4sv!J-I1ZQ+*KZ{ za%=ZV9DT~e<>f<+e7?Audr;iuPtd7vIs+b)1TF2!_2=LR5)DQ^Kg~`bTS*e(cWe@~ z+xv}HMcR|99T^BdH0>R;7m|fls`3-1)mCSD1|G@6V1d<&q_iO6cM`wEo1-~y9KGFs zUWudk=1U5Q)LXUbqL*psha_+3mv9z}hPcO$DlghFcWJDhTABkjd*i86mmWb1r^_;X zMUnqD$QHN)X~1Opg{)K?6}7rw-BsHXaJrEfHiRNsEXiN1BPlQ9X#GppWr;f_SEg>wwN#BaAyVvJB8e~SSaZl2@#BwrciPLhy>su zu@p;al1vv$Uvh!wCpb^=;4H=289e^%V#hPscRU?0a^KkC_yY8H^Z=8SFDy zW0nF>63XAD%hElQHkj-&3DGr5ZER9%cucXuV1x}Cc4YQvr3q{C1`I~DVY4Il+|YoT z-?P0Gdp(=t0fRk?gMpUf31dHDZ5aQ6X~T0U2|Sv^XOt^rO@C>e~6-jQ_%ODbN&7?pUe{BNWn=!TBGt;s(-m}7i>0o|fds+BTP6R^%#_=f*ke!90K(j0a za_qzDBIT;mZPUE{t^^5spOtaD^|B0?ZIK8r_?fEg_a>mX?5wa+oJsBFI+(ZGBugKE z|9vVjErc;SkZ^dI`Ezp2k?YECov7PSUaf8e-6HaKkqE6hk@bg*7p2;H1_uGiX(`X; zx8OQ2F{^+koIdK$K=;1|D|(NXfYg*goG(u+Km-x^?o&mT8Y;-?Zk=fUsgC}DsYy5^ zv>I)gb$695#x*FFd$6EJx2}K^uUDUTiR(qB(*-{t!-!gMl`Cpf+EXM@wMw-~G78Cj zD>plVbh=GNf>k9oaqptACDNP}?EMR24-UhJhr`V39x_~C%M>=(GKbHP{*+0oC~@`v zr7B8J29LTmskzsxsNGH-XnZjY0uPsX9;6B>o4#vs{lq6kBL_r|)H}FcdQySI1376d z631{$5%QI?QdXzk&V_rHn_gEu)O^Ilb{%-y36Cb^D2=DRC4QtO46hod)iL!l?U`aY z5kPip)!lBT{1hrc4-Jj`7T6^>#{R$FT3C3^CPGTBbfNlYOs94Dn+^VUoL-s!SBy|k z><)9GSJyRtIClvy5Ws0W1^5-gv@81H^1;FD(gF1@xntxfQd_OnTaU{1cz7CpRC&~u z)4hn`a-{<2IHL9v4~*mi`v>4cMP zk=x+NyOdmx>+6M0Zn9NWi(+>6Gd6=^b^upJ7q|jE=$1SmjgmJ&pTEHyAjq?i4AUpC zdM5D?(M=y=n><9{cKiKgFbI7|cj4L6jBde`!4F>diboX0EyCgabyqX&MK?{y3j>_I z?s>OAdxxdsz>oLOmKPQb)X&VnT~hm|g;r-Tpw=^n7HBF^Tr1tqz~ARH>rB3qnN7%$ z37P4zX_GA?By&cHv<$Rq=O-?cL?=14W1TOGTmLu_2{II%JMDwIh+vjek0Q)z~( z~}ADvJ!rZ)j-21*+xwvv$MIpiblu@Fc;v_3P&!b7SQF)z}gx> z0b0$iix3JlS!g>r z?JJ6FYpe(IcsR%%funI*swevNs?UZV(#avRatfNz)D>Sd17yh1OTXkT$+Pcm u&FBMF4TuRo|CFeL`n*x(3Y-vw$hr-(6CN^}qaz}^xc>oF)}v#&8~^|a-i3?+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_033/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_033/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6995310053ca319ec2844bbb7719ae8e294f73a5 GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zT2WBEdG#dhWs#6=rkW-HNYcH?f)9{md>x<2hp=6&LON zx&`O9YTAB6+0b2mZnCP=R#Km*L9yFPrfLK)4kW+*yN%__=h?GXkQK8S&XPTb7yO|m z;FW-Z>X%qiYaG!A6fxX@;0oNHh$qnlmE>+dzo|NIofohM5yQn^o)}&axjtsa$%YwN zz6Lg3C$v)>PY67uPjAL>Qa4Qu=euuXcsv-WEq~{V3d~$xU*9*kIQG>aF+qeo_W=L^ DLA{jh literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_033/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_033/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4de4a2f759dc416f316daf268e75806190c6269a GIT binary patch literal 1293 zcmV+o1@ihIiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T)95)cJn>hZ89p{6jls+8p ziw*AHo$q{Sx0DhnDWR$RkdTLlAhf%)C;7C}R?^T#b)UR)Ls6}$k!B}5=c;U!fH#=Dzm`1Zf~gJ1kx zzwcIwq&axEK{Lrop;hADCSe>j)d{=w?xV*u0kKT0a>Ph&z`GlSr{3+%Z$`A!?|Qc$ zQv)RB+Pjs=yIYBp86Q>F)`S`%n0m1@ReGEWH6;QjAQ0NqvnStsw^dp$%$3bMTw2f> zP2lQjR7tEN85am?HKW4ddpqnR1W2sX=*3Q(sT|tp0y3p-j3C1S!{6Z9_3of|((iOS z=y}-H%2JE_D}7(O4Y+^=0V!Ew-cB^2kZ34S4}!3|4CWF|4NJ?ssQv!*-{#tq>cS9J zfF!fDU@Ep4ULrYIrZA2hmgitB%?s}yoU0f;lH4#zNf4+Kt*sp6r7=K3xGYL*7XI!E zl~6${g$aXXJco8Kr?wEv3LcY~CS#Cj>&D~J2s2ZN60?CH&kztr+>bQmY62v1Wgb2b zONKsfPLxtY0>)5%Nf29&rZM@@;wGayCFtmwq|{P_A9MKwT#W<-J^@V$0u(f!OLwbS zhIA4P9tu%XjKv%8?i;HLq9jH}8%wHl3uITM8gwZa(tD)|SrgQ9L|;(LmYjMtyIRVz zR8vVNpiM~mBED12G406m2}mlFC92&msKydPb|RZX&=!HXUnn7n5g}t~scA(cw{nDp zxtL@zdVWEsl%t0qb~}MZA#)4kwU*Lt=1TIAh^BDX5JD^da=Sa)LR-jebI{19Eg%8g|MFw$bMaax*w>kY~YY)FZ`|0goRC8*-5gg1; zHJ74b_|-Knzpif=m>9di_qCF+cd&_ZY_5Cv-8I_4(q?}E!ALXg0Ns23giGIqOsB$WmN7YP&TC)s@pP zujBN8&B!)sqKT7|U^v@LQ+5LziVk&L*)*3j!K*S%r1x$!$c!pAmfxA%z^0?C284^< zrFK&{6!iVh6+7tt?K*Ug5_COtFaDP+p(C4yO4YPAQPq}N_Rbr(RnHPa^~i+2@(>G& zOgWCW0HTa@Zf)pa@7)?syqt_;|IJr_{}G-)-8zw#$qmoZhU0X2IzWEzROfL@HuZj{oOu{LTZ0R05=^cQ)NH%&T0caN)mwQO40fop3{Ca|r+d DCxv%; literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_033/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_033/afni_proc/_report/report.rst new file mode 100644 index 00000000..f6b7b83d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_033/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a041 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 033 + diff --git a/Afni_proc_through_nipype/_subject_id_033/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_033/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ec76e82eb949bb0569b592aedee7c9e4e6a37c78 GIT binary patch literal 2887 zcmV-N3%K+jiwFpT%z9-4|8iw>b!>EBVPzmOn|Z+JH>#&l7xj@umDM^NvEAmA3B4# zAP=4CZ|Q4)M*m9B0wi`R$&RLzXhwr?ch8haumASebnVvYh zcTsg1n3frw@>5^)Jm?%p>xZGE2SmyDakS=#PGH(79S{3d-EcHkQ%eLDhl5v04^-1o#bQy= z7J^`h5&BwUN8=0qyI0@+@t?P%HRKoyF(>+{AQp#{6$+G?xXt~TnuIQqhJbr42~65AYXwOl`rZatP{<)G76dL6Lhra5w4 z9~q$sp}uomYpAVyyRUY8^+V}6j;=$ijdI{U=_N~F*5hb3FNz|m>BvgE+Jc&2dBGqj z77Ima$n&OeVvQfdPsx~v>Z@?*8rSGs*Aj;_5#FGM?zZp%`yKQ$mZ%Wn9 zVIhv*qchV3(CO9b)T}pZEwx!~Hy~GF)%0b)uN>wcz{Ef95XUdXWW6ufdl!PTdYOtF zO<7IyQjU-Rdwpfa$NOT%F!#m$Ua?fMoCK6B_IO_uE1tPu68DP53U-tF?TWDg10!wP z6Y~|F!LFa+Ji&IVc4x1Yui$Wh4o3S$aj#UY=o%R!m?p(S#RX6z00)U=se)!n_d?}9 zA83Ap^8}C1GOYPJgI`e@jmlVKjpDNsgU1ZEsZe0i&cTeqXD-D%wEoQWD9(^UA!D%R zGnj=`H8bKF#Db2_6b5Gn22+`3Twpp=yU-xRzGr9n6%*nqgAs!!Y_`Q-Y8o;92ey}CZ(vhA zVz5VXFw!zSW8`P745J?~EqD$!0#BCk8MT!W^7I+4cPA9HzAbrOV1!O6o+8FpC{U+e z#!=fVQCwn&V+s>@km0X`3_2k*noY5WssFyszzJ0|v~(&zF`0T6Q=KC#g9e2&osKk{ z8W}!iEYlfpkv(LhFkvtax~A##Z4z*p!J);}+a--+(_pbl3nz?_S7b0%xe_Nn+( zn=m4@-t|J96|gtU@CcK!^FXI4Ld-n50@oKg@dL`WwrxsT5K~Emu!SG)+T6Po>PN^ey>+=D-1Pg zw3DOsdQXMZAGpfhbF38z$*m))r}V2$wcb98qmR!C_y}035vIf#WR<#l1gt0FHmf_L z2>jsAv+8p=gKKI{lDo|+kc1m^Dv$&EcAGMQt_*bXlb0{x{3i#V{qn2NKO5rDlL~T} zLInp5C9zp0gi>mQS@J=zUWd`X5L|yGBwR;OkZ+p~Ff*+C2suKrT-ebIg}k~ue4wc% zUE5K${BA)lKPcySkXGC_3fm9`Aa^yXN0`MDw@cWO)INx#4==JK)6uQa0DARKtMjGW zXm!&!frploZSYxMd(}QerQSP&ivYy5lIQaeV4l|)FQ5pw zkLD5Z{s5ggZi~)rDSnHrQm` zgjBf;4z>DC1(TMEH2Ms0vA&p=xi!nD^NPosj|AAR15Y~<(2U%oaavmuCR$?Q>zZkHq*~IN6vK@GqT8q+^lR0p zkO6vVX#Ce;U9vEa|Mk|&${RKjl4_N6**CW|&BLFq@#nMY((qr>LN&2F%(+@!*Yxqy z6r3{vXXOmwO9s`s!Fi_KS(kSd#-B;W{ z{m6s~rgs{Q;ZzEv^|6ZsMpVP@Pju#@f5eqaE7fdUb@=ku?21+15H1PkN>l}vZ5@C+=dPD z;9z9r1RSJ{#aS8-HY+zd?$ERlckfN1O|vkKZIRFC1#AW==Yd{rgs?Dwz@krS5?>KK@hg*NWr*ZdJ?eflw1KEnZdiTZpoWQhsk z+*!I!uwI1&@^lENJ!9|owzxC{I55D@E%HUa5B4s)=&o(UV%D_)ZJ3TnWXNQI@c#UJ zeqOFHJ+Gaut2>Y{i21|=#=z7Ql0j3=3^q3ZKfUENutY_goXJX@XJ(@KO#%3c-7JWu za++9~JsX~Bkcq;Z*?I~5)6_EYlF9gq>=4tiWMf^l#l=b7p=u*BD`_J&D$t1KT)$$D z+Epmc69ku~TZ}z% zBws~4u~nFN1HS8<6J${BD*5$8phEz|T${TIr=?gdk{?Cp-ja*gRR<&&=H!-WU?2lK l#gYJAVGY)EGU@H;CWL!}9L>?;2o4AQ{{Zia-x7`*000M0p1J@4 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_033/create_stimuli/_0x6c9baf9c6d70dfe0158fb11e86d9d85f.json b/Afni_proc_through_nipype/_subject_id_033/create_stimuli/_0x6c9baf9c6d70dfe0158fb11e86d9d85f.json new file mode 100644 index 00000000..cc200805 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_033/create_stimuli/_0x6c9baf9c6d70dfe0158fb11e86d9d85f.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "033" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_033/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_033/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0a99af6aa745e6129b4b137cd96e354232ad49b6 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tIPThuL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=wXwF}_y_<1!fhhn literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_033/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_033/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6146f70bcc0ef7b6bed03599bc76225d78ad6ec3 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@Hf2X?j6B40{mV zhuB*xUz;WyilIP|qS%%_v=75lgPGU`iv5)xQnH=6 z@S4sQf=DC}&-b0fkM!X$SN{0t`X&45FBnZvQsSmGB{5~hC9G#&j0Z&K`pN;k^WXE@ zulZ?S)r*MXgyeeN7X&MUq@qa{(_F8jh!TN?AD!g-v&SK$C>7jCDiS>FMW{f@^<_kZ zT;DoB-NlVgGuO)=mIMV<PMIPi#6Fp}2A4>26w(-YErvLj@V;hxfdcUr7ZA#NJ>m(eAH^i(LU};a z7)bgGY?qtc?VV1e(SYzxuiy%T0`i?a(<|hd_&|s=%lTRvu^=h<0TN1N2F@2)MnRUO zMcnt!!_^rUsYE;_42>2D7G*7hNhl#I;*iW0NFtF6Cuy#4A8`*NVpK*XKxTkvfVS`e zCiMwP5oKwn6K@vV7$f#zVK1$92eO_8*j1iwmiNy&5ZUvhX@{WSe2#WwgpnVizg(ZB9$8STc z7ZW2Yf&&BuW9*GbH*7A=aw13`48lm-k6(e@q~a;!3^F66Le_4=Y-&^xk+I3>%}knA zi?O1>KE*0J6V%<&)Qt5RA2Ku`LYgI?9Uz)oD3S(2C)!f9&PedKYm(8wu>-|njch7GmUY&CYbVH-$* zMC1LI>q>dHjJu?3wkTC6?ob%lCgkP)jQKXe@hS6ZsnY0YePcBG)O0;di9a#B8kS>l zj)?rHSId_!1tfINpDlKOS7qiMfhM;cqbZZ?+SjWNJoid#r@7~p6C5+aDTZlccB_+O z7GUYXUm7@eAQU`txO9ykMpj3hGGoKjBWn|c2$a-x9>FZv3f7l{DvVY~B(|Ii5WD~S zv~D7)7vBg(-@pIEljmmk{YDePsl}9Zl^j&uLfDgV%8yzNK1uqh@H+^K8lgj!VJ?7Zje4#eCoI+Xqrcl{(A~-LJC|c*$bWsA<_+t`Cp{`QZ z${uF~4p}IJN{>(_H`;9|Y({i){mli+`noZ%L$L;xHID0nY&4n=+nqX;pa>}e)t($x zcnCoSx9zswR-So!gZ3B~1d(H(q_&WHtFIP?zP+u$iFd?qdn+dHIuX|NhfFf9Yk!Y>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_033/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_033/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e6afdefd0e9120192c15576f3cc19b78939a3b55 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ+O z+r|}E8rhPaIChe0CuuSnj?&grDgq<`Q8Ha6rbUXzm=~DsRivH+KpP{eRm*@lZEJ$IOl9f1BqOphH?w&p8+k=C}x4@ql|MBln7t+7@GuQG@ zeZ*OAh=RUuAk6i2j5r+mz88c^d{;gn=^z~0Ve3p01O zGCxVYa@lnhTDBFQa^pbveVClY%e#?lgv80;lXxkJ+|Y7RGF*snJcfZGjrO)NHk0^( zA9@brk8RWkc0JzJ10QRik6g{Sd}LcL!hEIgTACkth87M3FB%NBDHC49QSTTTp=Oy{ zK@@o-KzfKY3^60y0y1V4=qZ`{SAT2%_fP-aR^lb(nkwNG|5_*rV!kNki;`M+P!>1J zMTy%e2t{ElA!Z{hfSH8r4dqF#(MaN3e9v-u$mbC9sMHiiZnv~%rB$idI!XMM?HRhw zN3Jy~KjK5j=Q(+&mM3k#C`g;d^%SP#uNwycJMBihqt-f2z+n&}!?V30iQjo5E9y?W zrFPoD;FRT?kA4Rxct8tJajKYI{$cPNTZWjt=-`bW64@I$z zy|jO$Y@UOjIURafD3%QddqIke1Upl=n-8U88AsbQFxVCg4<)f|=p;lqPMbp610WHA z!_-nLqe(hlD1X6)dXVBG!Gp65>w&@GV``&Q8+)izd?qn?$Y6&Wg*KfWP8fXVQM^g} z&n%zf44D)%gzbRAETpcPh-Z)s8l7qM&IATin|UlSlPNFM%W&X389ruGJZ3OrFlKPT zV4YbCJV_{jk1osbE!tqR$0WqiDYdahso^ojCW8?+Y1om~pOq%8#UC&j(T2m0ICDb- zW`57{Gwk;qiU$n#DGmpEh9`{ugtcM(1Evk%r6llZ4xdr3jFE3lXumh2m|ff4ss+aA zgyJz`xI%+2+G7^#_!7ku8;)s=yk3UC2{Y(MOf-jL9n31ZZV#{Q)MH?rKkuNfs zI`RgC3KJU* zn)V!2PpWMeHwy*O2X|joUcxiDs#RrWuTcS!aBC(7@*v;tPzA83fL#3S@Bp6w~v~1i1rol1p_|SI=qSk$8tfLVNlP=<;9Y) zX$V45d(hv~HObI7HNE&i&`MjS;wI9?4O7^FEP%MH${nIC=Coa^j^x%(5`TPI9a*kn zM<&Rtcbo06wR&?;+pDOc4<9n7j(29+w$A%@G_YLE4;()a|H+A9D8M*A#UXO?Fcj*x zjX;ilI9;StQ@eXKZ@(x*g5GCk+)ksSz-3z`f(w48D*L?&=q)ENY?NkFd$|GT?LCsE zkH7ma6PPx_m>ftrJk0$zJ?1D4b*Dkp?I*8Sx1nJZdAmr2)||-t)y0ca>pX{p0OYh> z`rxhT92z>XMs>w|aoD}T+3th_05=0>+okA{P{S&HvO*| zp`O?s=0dMw=*DpF5?mmFvvvmXYl7)l^ugtWgV&`4>RocjC{N`*t=?!qt~8S2Y5Y<3 zaaYOqB7!T`DxBk><~~c`2>5z9+`e=oOmE@EW<`ek|D&|huh`#Oh`{`g91+L-2v!xZ^f+s@|e$Oi&Y3qToB>{)?*Ilis7vHp8 zKMHaBy64^g>>ZYd!ywr|TV7Z&Q9n2Tc1i17Hd>v%fLhO)dZ=qaajkqi2Y;W>taHU` zZZ;uDCgi5WmP59PoKMd9I0yfHGnWqZ1JB8Mm?PD2ZguQgF0t|aY7QMdv@2fF2wU)#fY<>-i0nJL0G`3l$JD`b3yH{~l{ zldpIkzGB8#d{e&CHTg={;VWf)rSIo^K8K7<30HyRZU7t3s^yw!vK{E|0Ie3*B?twY zEOK0&^_8TxHP!=pJRB5`z|q0Vx39kV_Ekpwyg0$bQEGKRC3XL3J$HGCxVnF|mV>z@ zWDcmEN6bOUqe~%+SBDg?4k=tGq;Pde@#>J`bwY|)hm@`kDg7TINqt6g4E xW%j+T6@Q>KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zhYU9Onl~QS=~e z4&H5@{qH7j5flLo2SHo+kQ|CS3xbkHD|#hTA*r>Uz(9Km8i2Q|hxT3i0DX$SN{5nm z*LL8>$wn|NksQwV&F~|4_{*g~{=Ie~f6V8cC5H*r6P7^4IMjg;?28K@RAw&i;5++0 ztNofCWmPjzIE^7QtDXd^fhf)5G-8=qCLse!r57G%=F>+3XC#rrBRZ5K9fYJn$;?H< z{LI`uIlWGso88PTx>N!2nas>wJu{a*!2>qPaTg*nKw3p(bzjI~5Q%*f!3ZKG`DADN z$IPsxnnmhV=QYMP$bfoq+8SLFEl9v3gjkG#Sk+9@$KV*yXQf5TIe4HHm4^hm6>Lh#+ZsDVDt&^14v9}SRroO(zlE(q z1Xff)eS!od>P|-2@?6^GB$zxL#F1ney+pYwEfOL)W=1Maa=R(BQ=<}O%BQ0@Qe{^y zqM9N5gzE5EPNw7fK%=rliKx!O59ASPE?ak+B6Y2 z6A?v3MRvvfRMK2VX0DBbIT!^lMt(r{DZ>aqX*I2i?8;5S3oofzjs<6SA z$$raBr94|EU8-)kDAR}aeQ90WkQcX8?&SeaPMOQ4O2ePc_3`Kv+x0X7Z)$cWD97*| zk=ai#7cX4!A#hHfE&2Ygs?^;>O>Q_=Q#RMNua_Ns?v~b0Ys)DoICg?l471qoRwtp{ zr^>;<#CP(6K#JHAs&4f#w%QYnTN{z=ilfyri4CWM#O}R1 zYS>5`#Wz9G5AXf(_?ex3uh}AaYH_XVT8%38LfF%A%8yzNKOuQod9Ew9Q{d&-?rueJ z1-gQu1IoC4M?$Gezh8fLY)X4ZzU^7~wkLes=jGd(k#A=fzMTo*&UyKEXXM+Rg>QGl zxBLHm$8+pRL3j%}Zrk&!%D4{)4<+RTs5Upc2<3?=jk%ii^}4m%aSwI;k=bqb(a~<@ z)zKHPjwZy%;zSSq+-f~1wcg)w-X5~9*84RF=UPYysf`gGgzUcs**Y7teKur!7RdJ5 zke#z3JF`G`&W7xs4cYwwNUM+8)L=b)BsEx9=Oz7-)bQSrv#a5~A!k>^J0VXf5G&|+ z9AkNT`ekn1+B$t?*^?^wH-7A~wfczf-G7m)pTA0x$(y&kYHV< ztCcOm0S{R$gG!HBB{w@*a4(MOWagW5l=Tg3-oRoFD{C4xeAR5W?svKkEI|p;601Em zuJ8!K3a(f0)Z1C=nl(1yLIQyU50bo)dSk8>g?@fpQ&~T&hCvvDxmuRolYX=Cw7kJl zvryDAD%&xatR2=^;foy%%B+xq(BrGaZ`dqY=FJ`3ES%<{?w%*qv+jotQsxkEi3F3_ zIDO4r!eUz58a4-3hup*Y+}_6Cm}NVrL@KfL+%Zd7aLc^-#>U#QQoAUoG4yMvz%T_@ zima7Ru*zL2ZaRd@fwJw}xL3$N!;6{NhMZ)tS zE!XAziiPE}E$^LP6KKcXY*XrWyiM?XUa#G3_2>ilzIQ(W6whjIk9W8-&2|aHkiE`A oKLq?AgoD=^U<@3\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_035/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_035/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cb0a44023ac18da8a05979e935f3645ee1d5c7d4 GIT binary patch literal 2845 zcmV+&3*z)2iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=xkv3h$rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`k6*>>(W*K|J~mw^u0L9uyStJ4 ziKDfPuEW5z%;1EZ_?qXzZ^~FXRLWZNQtLJW2Y!fj*K++hdhdxOD?9C$ z(rp8ao957QePo0lw6r#tZNRi3TH|pJiu&tt5%?J28pb z&An#3D(y9Um6siuyE4&EEX{$Mz4lCLNRJ_fvt^n6 zVuAlQ$cmgu8ZcRYDJ!*RRjuvScGQjpoUY}CEulyjOY+z5O3KSP+PsiI&JF{(x3YWl zSXvm2xQ0||?+S7BA-ytP0PSv#UYgZnXe0dvM{Ow8_FRhZ#nk7} zN})mFRHu=q6C=eZ3^ScsEwTqp7RC&wN!K)ezD)uSQ#i1ge!HMiY#J;!Y2%nN@7g)LY4;^m zQ=fzCNwm#!DVGC%aQj8&B|L+xYE_aujS7f_8*?d;1^IT1Du9j*a`B6UeR%$p2cCU! z`1M}~`0J#DJWQb@0}3VKtP(*fwSbnq)2-DY+C$#;hkT-Scm?^k>3}lBpq`P#i$$TN z3qoGKKe(r<1zjttTK>ME7Vj1FC8UX4hOh-$0C889xu*|0NGg>3N*_? zAjdwQEmE#2y$;RWZ_1FM4_O(v)2PUB*_Mgmf}fen{$L7v%gzd0#ktg8ZGd^ZL$dVg z_ur=i(?S@N0||#mnLj4S9J!(FG>E$W?Dgt4&@Ccwmx<6?5Lv%Fe^F}P=Wq~!oR;%k z{vKTC6=oICgwsdkIq3d(U_~F$5|COFi1XE11r$I8zW+>7rKSpUy4N6@f2N~9Vrml3 z2<>JEX5C(Ai*W-=q&<>Gr_Sr!b;6+Lfx>l6DmdRIO5Lk&Hqz z-^tBSAl+U|kziFxP24#zY>6}{1$*~g*!_d>(ZMLQzKaak*D_*hBXjWL@DG`!iV{~J zUZ|qvWbn9Gms-2+s@m%|fX1IjLEzys&x2GUWixOMZjktdXyky%k$MNWD^II%cpxW@ zW#SlaDMG$lQ7Y=J+c|g7aT{xiLCU=bdRO+bpM*DH45syxyPpXf5 za=I50T&Y&!90xV`Me;_#(}L0Vg%e?N3okb-65RivB$b9e*R^gw!Pt$zczs0#PpPh2qG^iF~iJe9&|b>!l}(a16`c||a~K3a`dJt%f?2HTF%Fr9Fk zEpl5Nd6$yQaRXf}anpN6wOGi`epF?FW=$~5aiiMhUt@6 zJ=6Gy=(>-vO&+4}x`RP77=*r~yYOsjMK|Ed;0JGd#Z%Z4@&({<_PVPT_M_{j$r>jd#1{!1*-!7>G(?aX>7f_oSLklz&C~lN*X5jD3xpgLA&CDlc z$b`&n*tE$Ok@3hGA7|j7XJnFrf$!QG7jvW<&a94H(;+slca+!|0~N|7pV@|4ps6%N z)$w>8M%T|sY-ZMgSoXVDJXr}p!)l=6<7~68klEQ>UPWW%1ego(c#R{MQVZyE=3rw3 zAo8}?4uZ9fbHV3me}Bz&FbdWn=uk5q@@u&muN@w83NuBxB46Pue1(*+@V0!#EAkbu z!dFcBif_xea7Dg_tMDzPd<$>pdp3uR%m`P3bqAd@w4It4~L1>-GtQL!_CaaA>!)p;YJ4Ll8_mo zb`~)MArCKv%wHZ-xICnAm5{>aA;rr>idP9KULLY=dC0>55t7u$)vAGb_=T#0xO!XC zzfd*&?2uQlhMyhs>ecX*Ar~qzaDQqWBVU&ApA+MJ_57AacB;hR*&o@q?j8hpH#4)! z+SM$KHZvpGFOffMEmqUp5=e}HNdlg4I>Gu{)pZbTvY=Du9zpKp#4YkwYfgupoZsT} z88PR{8;|6eZ(vY!C9%MR*jsVKAW=Qh=a+pp^pH*tk<}B>gr=_eni(KNhF@Y$zC71ZaoA}4Y}3?l0$$WD03XpWAE=;HndF-V>wxf}ohyM&d@ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_0x992d4ff2428428edc7b2ca38bb86dc65.json b/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_0x992d4ff2428428edc7b2ca38bb86dc65.json new file mode 100644 index 00000000..f16ff0f7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_0x992d4ff2428428edc7b2ca38bb86dc65.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "036" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..19714462305f867b0da929abd675c9c555dc4c9d GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDF#OLkytk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=MVdH2#NrPgP^UuNESt%0YORBh#rYlNNQ{+Fwky-2H>vhqWz(wU(sLbC8c?I zf@z#ign=cJm-n1|c}QRWeC79lu3xf`{*2M|G$n3IQxa1~T*7+h#dttuuCE-xJO3@O z{gR*MRlSH9PDrlTeL=7yNGh6SG0pWViYO6S_|a*uKY0`~ic-OSq$0tyUW5viTwg{s z$n~xB(_P%y-Ocr~hb2J)6}et;bN#W;Sx9>pcPZvQpj9;1kGbfFF+WBz8ITxAJ~`O` zA=hh}qOqLnyiS=SBE&wKwg#6-aTL-RcrAuFmhir2dVvD*6&Dc7dOhL^sUO88XMncw zB~0oQk|N5|Ov!P)8!`8BjI2XHB7T2F?Ph{i8gms>4|&+{69!n9AN6{$GHIN_YQV>L zKnMfxyMiQqK#)<*D1DSn0DW3oWQ-A?NQuQM0&WGH67r6M&IpSDL7;sUV1*@ojK*(6 zs}~a^DuM$91Y_)tMmKCO&2l109t^@r+K*p?+@#_u;tVn)q(ati%xr2@5RtL*=*>); zRg1Brz&^z)nh5IdaB9Z-j2|;JAVQiYALsX2P*`@@3j@M1^CzTsBgFzX6Q~o^WRf;c z#I2OaF_N)au^F?iu6)2j(*)GS1~ah8CB z7n5Luo&?#LgbDH@Bg_ZIFEl~*GD{M(LO4zBx(_`r78*GN@!Nehz_6i~nytp}Hf#e4 zkZ82ua$PCUmQj~<%@(EV)IAo)wF!B7KV!ZPaCFLiT>sN#7WbJ~3TSQ{s=!u7>3p zoFgLt@#XTRO92U;^Jk0Q-&L7;N1(|q$7ssry7two1JAwE+G*}N74upay4wtUc!_ex8Q)X;a5P_1K&O?~xTEY5qP=(Rzki?c#0b=)G zoz+bw_2L_W===A-fBekMzTapfIJKCPu9Aa_TL^m`PWe%*!6!){R-UU$Z3?{nIy|g! zCW)#5Xb)3n-Z7W5((Ss>CZ@FJeUt=W*Rc_3S} zA=|Sd+w(xSXG3;oLw5cLq|wKGYA_x?kQ$7ui<168YItwR`PJ~=kn^kIosj1g2o>}@ zjxk%FeqoK9d(%gjIjO9_;bV@i&F5-!%PEw#Zwi$yCxY{mh@y2~O&29#jXxxT6zVEf zt?Y3|;E;tfsPqU`a-+Qsh0TyouD`xOSzkBibtu-Lvc_>ekc~$3LAz6j5)>gNpxTqe z3J)Qu;I`ei+sZRfZ_pm&f*^9@lhhVcZ}ioo(6_fWnRoMQ6h;xz*UFN6)UTJGmNz)8 zmx?+@<_G$Uv4a{bdT{_j={3~jYIt?{6`BQ0+dMGM!l@1Q@FJnkx*yh2nM1fGB1mF= z`kJ`{#k4RrtOb^*%!m2R+{WJMRWl}eCZO~@&?``I3tN0cV`HM!E{bUg{rVIbq~L0i zwbBVxxogEu2Vv2ZrhNzY3Oc56@iJzamr$ilb^S&!!F?=2JuiR!&EJ2R=TE(im<`f! zUA0#%D3?un@9gfjf=(E=I;|b}k-&f8wS3&(@w}bwz~6@3+PbxeJ6xG&vxHGZU*}N} n5%?QMz1KN`7#JY|m<_K|5Z9vBZT{_FndklsAP_X{>JI<_Xs+^7 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_report/report.rst new file mode 100644 index 00000000..b7175d91 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_036/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a099 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 036 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 036 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012482 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_036/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_036/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_036/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b16bae2ff6513861925795f99a85f42fb7be815a GIT binary patch literal 2844 zcmV+%3*+=3iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=xQ5Ib#rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`mA>R0B{3>3LR@D*mvFSQ-?a|WA-L2G5 z9Iah;9R{Xl24~#Z*E|m<$IkauywO)^-TYS%Sc*y4v@+enjS!y-aM!8w8RXcI?mF4Q1#fOeL zDLvu?+v7QDubL%oJ}(ru^P34w#$PuK{`Xq-R!6CJ8h`^oM7nFaejL5?M3R-gR#WM; zfW>Wd;J7|ALJ#tN_n=Z!8`Wl4ZFj2s(m@>Egi#x1VfAE|EPY*#qvd=qmm@tbS!tFV z(DQpQ=w)-FAi_YNGkp_lTpvQ+t97fgvM*Zz*Y6WhcuFQ3n{pPDJ!`)o2axh`=xl8dj?LRj? zic@4z$Pl)C2D6a5W+I+LE@*V7(K{CyOl=miz)YsRP%p*4XQ%jtN%5G$h{2e_K7%!8 zDexqr{9U>%-7{%}$sUssU8B^-CZ&eQ6dMdi*q~uYW`9J7O;k4Vd{o z+e@+6vnd`h*rPZYXepjB_7m2I@ei0bJcp9NqXm3UxiUtcKB4{Yh+=ka3#%3wqf?5< zh~Wwix@ebKsO=RfF0kR4#>nlZ_?sYwPRK;FDb_Guzi%^eMBVf)o!XB~rk};s=fFy# zLE%KFktSm!#b*pNomnli`%D%_45mrfG<~*B0uEEyx0rsrpiyiZEH-K5lri!|22)4w zV31;;nvb;+V?z5~FT`mBdy^DTu-BhA{ti3u!<}5|i_hl(WaVj!UCW@@HwS6M)BGT9 z_~<0XczbOk~3&U2}wbjx+M+I${IpIk8T5olN=oT_86RjTT9 zP(6vZS>Dd&Kp)(FQGN-};EGz2dP-JuGgErVSA?C21l|Kx#ZA02=B zw?6(d=^zhN=*WOVNjR%SP)bdpCGT~rRfzT#@A?Bi(K@_>eA{$DnPE`R$l=AJu&oP1 zUft)=Zy*T>#vN|#y-3kqm zSMN4jU#qo7TWyyW(1#BhQ`=^E93U+Wf?BpG7((xGgaB|O+atiSz)U};qWl?=j50p*Ok3GQMaGGUfl+|Mda-=5n2l(>kk(%O11MG4g!$VQl85{ zfa|=%tOA;F`lvq#-TxM>=sj8jQd0tPzB;Xd0*JtOpDC);P(e<2>qPTUb@T^JO~M(W z)o8=4yX$N*Za}Hrg9SCZbp@1oz51+6TrVq~F8KKvM$~$%Tv40Sz9NCDRjN&rQAp-n zx!DP%(`_metSYIAdl!W*k>;de?_UUecoaT58fMn_k>UDUM%>=W9KAUHQzogR#MS$k zswg=bJnq({=6IUsVR-ofq4(+V6O$Vp?F zIEGt_kgt@LvO4W{F5I)+^t$4q<|7`q>%h}ac{CwMX*}&M@gpr^c-1hij;WVv&lJOn z0J2-F?sY5WXHWrpXlUFwz%IEl4*v7j($Y_CBBazx7piZ@bXteM+2C)->9y&9%?S0x z?l2d6bzRek3zy&m0i3o|fL{|#yP^*+9~`_c9Z>I*J4Svgwbfd^^|)M*hiB18mB(E< z-HQk=S1NFhgPQv+c_ZLy!EpD|i7>f^mm6gX?*EUHO2eM(TD+~97IU1t0}-dk_32@C zb$YATzJ^;=h5PPjE*NimXTcDjN@27*baCKlWEoeyA{gEru12dK6gxPBZAYk^PB_UH zxh;;oOUdQ9zAkQalLtk$Sjf(P#%3_g4&bWj0w= zXA*xO-SiQ*$wTyQx8F|&gV1+$7oIK6=oUN~{NSfv@#Mvw9oUUl=C8Y&VK2IAI$jvy zS26JRdDqcx6PN-dzvnSqTB zfXLfjI||k|E(D*U!^1V#!6;aRpaacx$gkyMymoxdDa;h%ntX-p@D)Hn_cB;hR{Euu~_m6`6o0(~4 z?Q0fBo0%c(m&l*C7OUw^2_(k9CIQbkonU>f;yMU6S5!B28+<+^ z<~(`hksR|43~Fv$Ebt)qR@^X1R8REjRi6z#q?1ErwO literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_0xcc21dffa6fe1cce80b5314a60c3ff5e6.json b/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_0xcc21dffa6fe1cce80b5314a60c3ff5e6.json new file mode 100644 index 00000000..8fd5a34a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_0xcc21dffa6fe1cce80b5314a60c3ff5e6.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "037" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a579c7be5ea96f04ff24a41ea7b951f835830063 GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVh|k;YS+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=U%}~a_y_<1HX|Pq literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b102d2fe290cb8d7843c95b48752d8eb17cb7598 GIT binary patch literal 1537 zcmV+c2LAaUiwFo)%z9-4|6guzWMwXJYixQhbZu||tyf!b95obfXhUwjq!+aa@i5vx zWEaxCHw~Z)Rf=|_jT`Q%Z^8A+w^iH@Ym1`#QuwE2jC+h!5!u+WyTUx^n)O@%xpMcQWXVR zk`{U2JsGaSsZ13SDR44gAY7D{2q%#QbR@8tOISounkH#(ZtaOaX2h9_ARu-?WEgGk zK290}q=fM_(`uUUYAk#j6X(#6z#mSa-AJfTW1(Z#Cw=MqlV^+D-&K|M_mGq8p5>ISb?vKV51+fGwb$D6$_bvG;1$CxvAfkv zDG#Xf@GlKKHxNpZctX`JAI4UDf^lmj(miJrganz?@*d)>x+AQwMpYcGjzO$@6$Ezg z)ltJ{(kQ+Ol74va`^V4h?0d}?!BdNCRo7}%sTaharc-{@YWNB1!^(4AshtX5e(mm7 z1XrLd7<51xx9?aeRq6HW&yG!L&xp4@3*PnwZ~MG>J2T?#%!0Qw!P_}6-tLTeyR+c! zPVjdB8}E3I9Vq~BA;xWcUR4)zW#*40|C=HXl$(nDzDh#rRQy%n-`cF6YGA=|Tr zY@Z#nb9TtiEFn8*hwPpmvim-3RjPb%kc{Mch_?YUlC_X=ihTcNVpNiZxW$G;Rc{*=#-NbQ>r^3DFYO zo*FAWLQuhN)I0Tdp7qTt8*m|kz=02`6H;%?lr!qf5w zN6kW^V^qFlE?GO&Ska3eOv`yZP`c)hZ5B>ls=Mb&^{o40gOoMITOz?C zHcnqNmrzVgt6^PWb;y03&+TpOjajy1N@NnH=Z;xI!7ZKm#>VO~sa=R^O#RxaU|537 zMb%0tsB%||n+~CJpltg#?iI4n@Zx37vVOv}w(9zgS-|^PLI(Z(@i%|}VV^(EBH=Dc zi*?yuu~05sdGGmtyA^~X-3X!O`>@&U-|w`#bff8a!tg$9paOUHc!w*?Y?m;K*y}tB nBEbJ)GJI<_OSJ%w literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_report/report.rst new file mode 100644 index 00000000..13c82a89 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_037/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a088 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 037 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 037 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012266 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_037/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_037/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_037/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fe0771b2bd1e5c06aad6580bc920c8e059866071 GIT binary patch literal 2849 zcmV++3*Ph}iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSsj?&grDgq=xkrq`YrbUXzm?CKcwB<+|3pe58YLXa({2@!H?xSMh4Jtd5Y6P1lL*j}~U` zZl!+WXyvl&Ffc7MIOWE^=6NtVj+S>rM-PaT@8f9651qiYQ9N9TZajv8A&vI7J~ra$ zfFHUx;*TxV2X;N)(R>f9u7@1eGd*OP4#Iq;@0hCRySf?-eK#Bo)hQER#bNIl>49n* zYECTix{tH~sTg90mI-8x(AN?&^)J7>|KA_}J*Y%W$T1YcDf+#T6U1y@$mR=5ZnG?I zl=B;0zEs%U+=z+U$n;?*;d(=UQfoBg=oa5I9Uk&IggnYMS(aK&b+6K_)N7qM`qFZB z&EiAHoRlB&f$i~}v{TEHHlG&?rTlsVlkwLLga4gYqt#Jrojt&TA0pkgTtAN9c_PWm zPOGVOTEODAIdEJb8KDRHzPn$ot9!L(S8aD{yV8Cf-GosaWnuMXmMnc$i=)MSE|()c zEm>(+_MqptUeL?tL_vgsJZJhQ*0?@|x>xVkWMx;9pQx>_((Wp8bmI^mrg9j>vUzVtL$bU!i9g*A`8Ei zljW{l>s(68;_F=8YRGC*mvX%SpPLH{KHkoi4Rbq}-x3RD%Sk}7Y!A0{xw2<&7jj#o zSjKMBzfm^MLC=^DZRPT1ox!f3;5@<# z*k`cDECrqsDcW=HI~ zp#d|$XL~93dN#!a2743-11-f9#(u)uF#ZA4hUZWccr=I4C|AbF(9 zV{}6C7%^O-K^N^Z3$?uh#RWDT(-^tE6n`D0&-TL2j;NcyrBnNn$@H_B z`W#p(G$@?tG}2^jr1+F!rZcNWcAv?@h`}`Jnx@aTNx)$W`xeu07c`1ZgT*FooG?b7 z$YAQo9SlxDRNU~iJ*3HJKujlaUqyS14sfBxAy09kpGV%IV#_RT@s z@H9V28$LQtF&=v<4s41I?_`iQOdQPjumM87KW{-g95kM5vlC#`VuztQ#}V3C8=+Zy zCJlDFoldQ(Fw&sjOdh2-J1RW=L95)mAYDO_yz^Y@DBVg!tu>#=(I*!Sd;}WS2&d{8 zY?Ye&98^!DZ5B(p9O#3)FDftL8C+GXlH6`oKqTCnNr5cLw>wk;v}KTs_YV)?`A;5r z_TkYNf9c~dk`D4Pg^mm;l!UWN1f|pjTJlb(R)c6?@~%JN6RpE5$hS=glonpXs*H+sV1@z$-V`{r+re$foXN3dP!TiAXvhbgr2!;ZT<5L_UI}1aB zW?2a2*oV_a$~C3irg{5K84~n9E8}(=6&WtuA`x8hGgaB|O+atiSz)6%liJG-FmJU< zmOlRW+f-m$2xD>};qWl?$K;qJHvtC~O0Dx84g!$V za-PdSgzLP-tOA;F`e-}{-TxM>=sj8jQd0tPzC5jf0*JtOpDC)er-GdBHi+h*>gW%c znuIe#Yp)Hn?yj=MxCW(i4;Hl7Z786`8?|R$;(Af(bivQZFrqeEm8#m5b`=R!tx{`} zj6yQs%FRw7oo-W+U{y&?+`A}ji8Ln#``|*@gTwIA;V`qhiwxJ-GGb{hbNJ%u51FKj z5?AkEs-om%@VHx-n!By4+U+!e#-D~k;NddQgH$19({~N7pZJ7mN)9Z?dnvZzct^-dy;n9Q~rSY`4%#XB$;Z?)5I;LKx zJyQ%P0?2N?w$rUvo{?j{|atV74EyAxL~~Lod!dADuvPV(8YnHk!4)*iePwixEw8eQ0(9gwjH5i zI^iT+z;S}vv*i34*YokYf`8+aDXo02z#kKP74E%jIv(DtJ znc0L4nUI+dn>N`ZG9EeO;|%=sj7&1n_gy>VVvbb9xz(|2I>g5HjuRWBuR@vRGuto= zG?iwkIv%aU=;}F%^~?$o%YO5UCoAEnSPe9MlHIE-WOg=}SJ4PL0pjek} znk=*(oc0w9Yiq0r@_0DN9f6~Rm2X~s{>`hD_<3=Hhoi*mK|<=m(R$|c5OMY3Xe|SC zNyrRPJCB%wkVlt7=C2MZTpd!lPDtVEkmA)L#p{F=uMSzbI%MJh2ubSWdeuNY{6f`0 zT)ipjU#J>>cF5~j!_N+R{c8BhkaHCnxIeXxkuOX5&xvuqdU4AlJ5}QE{Euu~4-SI| z>zQd~?P?ZA>zN_!m&l*C=Bw#V2_(k9BmvJionUpP>N*HES1@(EO$cdZ~gUGrKvJ)OMnxi8ky14%VH+%^_xf}oha{-hu literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_038/afni_proc/_0x9f1fb559a7f70b06e79e2ceeed7c7503.json b/Afni_proc_through_nipype/_subject_id_038/afni_proc/_0x9f1fb559a7f70b06e79e2ceeed7c7503.json new file mode 100644 index 00000000..e225112d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_038/afni_proc/_0x9f1fb559a7f70b06e79e2ceeed7c7503.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "038" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_038/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_038/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..10b65b4ab82e4045ec4985c11a2cddbd1f7c504f GIT binary patch literal 305 zcmV-10nYv(iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zx}u_Z^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFuBw(>=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>iJy^r@L=sc$f^-mcMgF1!k_UFK_49ICj+^%Rvhp_W=L^ D<~EvP literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_038/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_038/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8a3887e32e1e3f7f42329328b25e1887d43689fa GIT binary patch literal 1292 zcmV+n1@rnJiwFpR%z9-4|6guzWMwXJYixQhbZu||rB%;w95oasv}t}dZJJgsLL64% zl1O28HrebpAcQKRqKXm@MLmEj%QN$4?X1ThY|m~|R0%E>m3+e-;E&<=O# zMPgRk8T;9O-+S-#_kOTi`{2pUKrGX$8Zpv1@a_iTnRj>QJ0lv$kG)$@ zr~#63?cGY`-K|u~oR4a6YeJ0>Of$GMReGEYH6;QjAQ0NKv!~yBw^dm#%$3QzTw2gM zP2uWlJd#*NaxM_kYEFg0_jZ^?2#{K(F^W4~rV8ku3&@qW34#m@41bMl*L#EG$Ne~t zG4e30m8BNvSNgtk8*l+B0#dTZyq#)5BhgUeIS9h)D!5BEH7u)&vWffSf4l2Ss!Kyu z36jjpf~DAExQP^CnZi77SYCj!v?#rMaIO-JNOHpo5lbo;j*l(S;V^| zR7wS@4@?=P<2kh5g4$9jD|kW@nvOxDuNzNBBdkm*Dy#;6JV!tjaX->fs0on3m3jI& zEIInHT~SF1DHucbB|&Trn%3n*i<6A%j9{Q+l2JuZr!PK z8Olj8d1ypSITo+IyKk&2iISKZZ7iwREs$NYYS5KjSa&NEswSxAh`ywjEd}*xwzZOD zsiu-lK$}qVMSiE6W7(1A6OdG<@Pd~ z>Tq-jdHrc6(>lPpw%lr2%D#8^X4Yq6>O~3ZV%hDywGm^HgMVd^cd&N*sY38FJM3sM zm9Qq{_ON5Bv*a@@>QwN`JcJSdvxRJpeqzIW=&$g>S@9g2%CqKQ}iyBVtw}yk+ zs&-Qp9RF}l&##)@B^Ji+?|rEx>>X@k9^38SeRB;NSeooECN0o{3|_uGifT5ulDD;l z$GaETIXz(Qw%fWHa&!XO;&c+UySs4FMf7c$C=&5;Q1e-|-hFm$hsaeF7Am@#iR0ez zxQ_?#5@I!y-OLD12oiV@9Y;sLO56?~Nu`0nMG9rjqj&ChqjPnOGX9m{XE|f+oC$E- zt?JBeZu?1weW+*b^Ez47tu>S|{>YeX78xl!)6idW*x;>)XJObJT?hU0 zIzj(ekL;2*o7gD{rn9@$Wj9bzbhyX0Pje|#+$uvydgnHS&8SM_^*eJLC_1_pARO#0 z$xS0D82jBTelYsmP3qc1F!bDg_rF33ifmdc)!o)awJfvztv7C~=_Q2fkqNr;5HAv$ za%^n@M3ofW+Mr+W+!}Vgf{YUX)fa#N5uQKYI+3-@kcrK@iJ>3`0qvaTy*xQNIif6m5lJzz>DdckvN-3`;c%4G%@{_EW;iT(kV%N_-D2><{_ CuXker literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_038/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_038/afni_proc/_report/report.rst new file mode 100644 index 00000000..0c8985f4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_038/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a008 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 038 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 038 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073271 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_038/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_038/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_038/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..caf9d05c193dffdb9d6f206e9418f8f3d6f7a087 GIT binary patch literal 2547 zcmVb!>EBVPES2+c+rimM8KV*0Rl6{}uNjI%2jwlKItaX2FY3|y} zPL|%jY&waFOX3r07NIbN!CAU_nD}&V{WQ!)l7ub$1;#kG< zj*QL}!4D^iQ0_;b}yU}U1)P9zJm7uU(y z4b|I7_cWuZIf|JsV|cU#nTVUMd!gOwu*XPNNNykHUCZ zD3+Bnbd)3#5sIV{Om(X@P!01?Gag#qf!Q0FS$gF;epd9d^o9Y##=v}N8Qp_NS^Aj_ zD=Q}yM{>1R+^yE+m-r+i{#d3gK^upL{sinmqCqK=7ugw6H%}t`&InVxe%$UhwL?wq z8{pu5;_Z`R!UAim#v`-avzB=VKk~pJK((ovT}b$i+%B``BR|N}w|h^TS^D1jY63^} zZfgF&uYjh8l zEPbD^OdmkEukxkYY&F}K-srTTR$$i*3~68<7It9aA9h*bmvXW>Fx38~q^!Tn#5LWp z^13v#pLR+{%hH5c!m)rcZ+K#lcdlzJj30X83Wr0FtfO#YIxf67H4xe&g1*OoQb9pf3Sd8sl)QX_=lH(Z`e1!%NIuHW& z!V1R~aXO(f4TdZHZM=ehBFyG-j3|#k@&q{LW=5{f^`}ITi{4 zCxU0T5H0pbLKdb1=1E7$UVbJ4Co4E|1-Vy291};xgg0IaN?}>R+)ywcuW-cGXJ{&@ zaCs0Wbk(5Ye1+#U9Gx}(1Yh30-D3TVU!MVBlrL8}a2<{#GF~-86veAXgkP*MorNnL zdmKCA%W=UWG(Im8CrIqkc?~A;@$6h%8~`6Ju^XD_e1tYdQ@m_1slmaZ-&Z@PKn+@* z{3yNJx8U>#u5#-FYXw5`&XLwP2Myg)J4adi=>>%d11ois1u+I)Q?-tO_2k@Uy;dv& zKe+j%@f6PBrq$Gpp56eGaBWEi3P9g(a0bvbfG&Ri{2848?7;J$fAi%ZM)b>Ezz$Oo zYym^beYO~()H>jnanM&)nC&Y$h{kfxbz~Dq9`S*hQ9Huem&;Y9W-Cg`+8ym6t74;? zg-W}MRo$tUY8aKb9c3G`0OYQz^%=7`$L(@x^*0&w^#YHwV7u6_oAjl4@`2px*7VEPe9bcPoPFVoKRvM52?e z-{vb5Q{mAc5~bHZ84f0i7P`jPoye^anys!X2U8?!l;=cf?}63#D=k z0%{L*6PUQJJ{~aB>t=rdc0Pd~OYb(CR!2KDHDI--+F==mWWH5g-az_;j;TRZc}?89 zNNgE3X9fHF3)4P(p4@*v*}8LxoghM6<=Wk?=TE-*%~oDTxvBRrRZ)I3cra*box^U^ z8uWE=<9Cxd4ryJMfvT{w83m3s%5B1I>~1KrdIz%`kD73KU^k6*W*D{O2S@R}ttfvqqZYVyZ)^GdbZ^T+F=C>-_3K;kM?Cf!VBPF73eJyQy42p^ zx(%rC$M0`TEQ=_4c2%DE?f>)|iSyD2nwCk|4Q|u$(#;o$B{{drn J2`;%6000mR?L7bh literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_0x8020b887b800fb3211deeaa3d63de33d.json b/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_0x8020b887b800fb3211deeaa3d63de33d.json new file mode 100644 index 00000000..c84b641b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_0x8020b887b800fb3211deeaa3d63de33d.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "038" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d51cd9c35c38c5bf6cf83127216c22bf5e66e607 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z%nGnv;|=;u1D6FUBJxOMPV*-sSIQ z>(}zQZ0dQ$a7IeK8VZ6HK~mAINNK5;Q9_BpB211-{mG-4QIrcFB9#bU3=&kKl=?EF zQK@g8p6+7L+bZ>9fF(f@6{VhYOZ{=kSxg5OcOm5ipj9-ZTR9rwPtL=nmq`jY#mLwt{@p75oA;|NgpLAfIh7)3dTrCq{QL~0k?`x4S7dFXM#n9AkZO-u)-2PCgZoE zHAsmO6~Pe#f+-FrqiZ&oW;qcg4+dc*AEqxsZc_0aaR!+YQXy+MWp-v%5K*w{=*>c! zRZFp=z&^(+IT6&|@zjD189!iXM1(X;KF#leps?()7e<6(7M_sWjT{TuOrTCslS$e% z5w~)lrbwn{#iBxBDpu24UuonR#BcZ22*ZY2=ybiWHenk` zfJBr1R_aE5woJODYqls=NA7_zu1&~`I|U1EfRj_^<65Q3&-%uA^oi+unv-y9b~UcY z;2aUJsV6vQf>RCC%_9Ad=5Xm6J&djPIc3I%=lj+siV-NO<2-~}t`%%3M@<-Qj!A4d4Ip;^ z)p6TI(yqP{h<!b%4eq{E%J~-NI zygL5;)$xS*Se)RYZ>`oXsrCMb^Y)N&wcc+zFxNmjKy8fZ0A&9y$jYajURJttv^@m8&0LH9aE@mI0>AWL{zQQYPu)^Yy2SzE{&5EUM?wV%h)P}lukxu10q1y`%A z)lQ(wU8!z52#bLoRA!X%-u%Opw& m{Ew5t>ykhWjF1S-##bqbYu@U%{O(2(xc>sA;Jftd4*&p?+Ugtt literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_report/report.rst new file mode 100644 index 00000000..7093a954 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_038/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a008 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 038 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 038 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.01271 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_038/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_038/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_038/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..43958494fcf44f4f26a0243b3ecfa7da67b7ad02 GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=xQ8HB}rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z^VkmFg1+Sk^rJoL538<+9Mv;DWSI`ae7WzKs^`198Vr3m91PVd6JEt(?-=QUY8q-z z+~Rc~X#r9(#0)JH$QYroC1h$}{bT7roqz3qA1xurPza~!_d-q(vw0z#FDSVOC2^ya zFK{`bkk1ukVm2~;m`S+akRMm;^*Fl4_e_U}d=4Rxa#fb4R#R=1o8?-y6GvZJuC7^p z=$MnzLq4!Qo|AT~S<>e7LSZw%p1@@MRm0$aw^eU-lxn8|IPgQHyO!(6(L0YNS=nth zl}-y-+%^Y}>mwudAm4ZQD>b!IZFbdmr@ANY$I(p~wNVyUPiD!|*VQ;$%;$1B($kWa zX1M`9zx9G%HYW-q4CFb}H?hX`A=JHEw<;@plKfb0b(MBkiK82b=pbju(H$8&%U$KM zDz|o@#L=fbTwXrJ$mffjxd+8f{sf)+rZeC%Nzl@sTz?LJAkkpt^V96~v6Unde#a&; zyS?9NRir(s+L3|aL(|?ddm&j^r7AyBT5WZfXW)@63>H|eNJbC<^2siiqkvp1e9b?FhLaJnqB zS1j<~1X+<2NdqR!FJz_KsHoNb>aN3_f~d) z7E23*Ay=2mtvw-*-ltcl1EAHZ(o3^kt2ESlxmkl+fm^35b6sUGy9F2iaf>YcQcjk; zamC(xl_n(i((18 zN&iO4I0rprI<%e3mvjcZeuDD^+f%oj+l71yhdVPc*b#Hv1+k=SBt$SynnKA1P#^#Y ziDjXLCdqW6^aU4aeuDD^56)7o`8tD-sf|W$tf5BnS%JYr2HVsqu;}Dq!r(KP;!WCr zW_lE-$e@rRZ21gkA$83}JcC@&=uD$`CNP-V%wvI>OnISRiha*c@iCL)F@q6u zYs^yMNkaL%bXmG*(gu?~CLy{;sf|ra4UZ`{7>uw%!;Z}UtTbUQ-hjb~Hf(mpo*No4 z^Lw_JVy|aYJYcX#aWK$QJYno7tPSHIFl~4aC4onC_>6L8j68ip``r=6?Aqp5EigtW z6ps03IrADK))i>c3n zl|qBUiB2O;#zu-y8D=`OT4eW`EQ}aTldfs{Y?}lerm$}@{dPg4*fdyd(#8p6 zRiAKQq_SQIvO zLCC8Q`dgY>(6vof%Rdm*;#M)gi8OJ;5H=tSAnqzshbW6VZI`Gcsks|RA755SrlVV- z0rKkIM(b;})@ZBkvI6>Wn=!TBGt;s(-m}7i>0o|fds+BTP6R^%#_=f*ke!90K(j0a za_qzDBIT;mZPUE{rUVIkpOtaD^|B0?ZIK8r_?fEg_a>mX?5wa+oJsBFI+(ZGBugKE z_gyM5Erc;SkZ^dI`D1d-k?YECov7PSUaf8e-6HaKkqE6hk@dTa7p2;H1_uGiX(`X; zx8OQ2F{^+koIdK$K=;1|D|(NXfYg*goG(u+pa3H9-KUBwHB^w(-8#|yQyu*QQ+ULBjB8LT_h3PdZe0N-Uavmw64#4Lrwe{Qh7q;iDp%B|w5Ld*YL#k}WE7J5 zR&I6z>2#Zl1glDF;@(AJOQbm|*!vg49vp@b4~Lo6J!H7PmJv7CGKbHP{*XzkC~@`v zr7B8J29LTmskzsxsNGH-X#8my1RgH&JV+H%HhtIN`iW17Mh=J^sdsR@^rQlZ2XfL_ zB#z;hBIGM&rL0c7oeTFYH@&WSsQHM8?K<$Z6CO>-Q5sKsOZ-Sn7+y6@t7GbA+B3y) zB7p4Hs=M7v`6*O@9vT|=4X{gYjQt<)9GSJyRtIClvy5Ws0W1^5-gv@81H^1;FD(gF1@xntxfQd_OnTaU{1cz7CpRC&~u z)4hn`a-{<2IHL9v4~*mi`v>4cMP zk=x+NyOdmx>+9ksH`ywx#X@%WGd6=^b^upJ7dVl;Uh#Z1O5Ol{{swP=AkRKBOrN~! znZ$pOZu$t@!XC5F6J!PHc?63T2Yd?7%G0RGOjc zc(e+mtLG%vGb=zW`|V4ftc0IpHPG-$woy~a>})Qtq7iZe%msL~!jVg<1#~$xu(k#e zc{?kI!OGf&;4^e^u;Mxx1uGDApqUQ&wOou>j*d8mnIc@1uW%i{LdsWoQ@-Lg`HI)! zE2ezKH|1NnCf~w!_!d&Wh1c^vpF>8bge$;t&xZ|X)pQIr+3_`JfL3$s1qcP2EVLb* z_7w|jYpe(IcsR%%funx2}q4q3Q5Wa0k^N$TTz)j&M_Le)TAy(#Hm zs2YBD$m>_b&klM0YWT^Ja}^l4KedgKFH88(iE+Miamyk*RpRgbk8E4_4}<&bnQ3M1 zX%+JFsQjrvA~1aTXMr7Q9aS8SA910kWLPfl~d4!rmpy!86ZQ3Uiu|(NuGUg uYepZaYCufz`KLq`)aQ*NCvrjzBI`EDPI$;@j*f`v;{FFm^~|=p8~^~--iA&9 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_039/afni_proc/_0xab1371e1988d24b472db63e18ff73eb2.json b/Afni_proc_through_nipype/_subject_id_039/afni_proc/_0xab1371e1988d24b472db63e18ff73eb2.json new file mode 100644 index 00000000..354588bd --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_039/afni_proc/_0xab1371e1988d24b472db63e18ff73eb2.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "039" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_039/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_039/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..39004e527fa6f8e032afd9c4359df89d0e61dc11 GIT binary patch literal 305 zcmV-10nYv(iwFpV%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zx}vCf^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFuBw(>=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>iJy^r@L=sc$f^-mcMgF1!k_UFK_49ICj+^(H`X5_W=L^ D`2w5f literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_039/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_039/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b18beed8290e203f69c19ccba9e50029ad7ce69a GIT binary patch literal 1292 zcmV+n1@rnJiwFpV%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpG-D~*vvXd1vAuUmQ6zYYsN^@y1N@(mRj6j>HE@c!Z{=eNXZKGPND&YL_>jk5QNobFqdd*SX$;q?f1w3HrJL^7lx<; zB$=fJQ?bqP63M|bg>l@pJO^WGUU>KLOvUJt}>xO@IWh%)`fF z$0TAf zkWPZZLm^6vv3Tp<17lS|l*GtrV@Y*xf$W-8gD&MldcQOwYl2#i=nHDul2eaoS4%mT zYAVSDv1ZYQuPWNu-+)>68yTuB}h(G<=)LWl*VOYjWRCIn2wk0r9iR7>9YC^G~*1JcYlL3~2L6c-&Z{F=U9c8{{qEMpTUPMzJ zR0o$go|Q7G9Gv%-+YL+E5ANPf`aEpCEFf7NyOT9CVk~m-uN1Nt=I$U-2wtX7S{h6# ztO>Dw(lTXyhO~Ur3bYDaho5b=@Zou=$RG}_2$@;!HmAR6?c>)cKV9xeHKz_5!Qt#w zb14djU*FL3oBDQviLnR!UnvRuhg%rO=DK&^-k=REZMGMi7HCceuU;KR6`Pxux4neN zyO%f79Lc5}n=&=5^++cc0(bAaWHO3l;6ubUNK( zuaAoF6Jj-z-OLD12oiV@^`awR#%_;~q|!j(Jb|L((K~mi?sL_MGX9M}U>RfVj0tc% zP1l*r+|JV!=TO(!7geyRTdyf${Ha?Fr;%)|JVp21HW?{9>!H8mvc_92Ps6fST{->g zCQkp?jBJx8nm8#5hO@miWjC>*=upR%O>-d=yeh*)dgr!+%&1ah`JK8=Y&yDXK)Bdj zYBzO5LErCQvxDB>sYBN&LDw_){r_?$bY#;|shYMXs@gKkuDo&E^(-M&k4)$*kFb!) zl;da%Aj&xB)`tG|&aLCb%gHGAUw`@cAL04aZ4g?)HXV=$;%O zr$_y`KRim~K@YmeSvKrJjGc71I*(Jb$zRQqk!ywXNvAg)#@)dn9d?o~3}M*MPKI&+ z82Yil!XFbX$N!W8{xin$|BQ{VJYYyAK#F>2(+$JC#$^iU{+p{Zj{X6b=?aE(2><|W C8hbSW literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_039/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_039/afni_proc/_report/report.rst new file mode 100644 index 00000000..56fd4159 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_039/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a066 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 039 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 039 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072638 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_039/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_039/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_039/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ad24dba28ca1f78dd507345a136bdf433fdeb465 GIT binary patch literal 2541 zcmV`niwFpV%z9-4|8iw>b!>EBVPeV_NvD164Bmpy z^r0{L1AXWZ=wIny=~SXD@I1W4{ zzH!kIyc>wV6@|nMLgbqv4v~v}M8x{g$7UD>wi%D3AQ_F#xhJAYlEE8f$0l}6sk9|p z$BN*GlSEeTNAtUX|6}wfa(+tJk?$DPo%A=dB$oz|{`0!Q{%%L>^bDof0vtyPvI94Wvh>PhRX27!ZKKx#FD~PeA4JGW zLP+)XgGSSADeb=5?J0ZeL6)vTuZIc{JsqX1FO)1@ElQF^B^}*p*IOX@Jd6hgsU(-6 zqbT4A6H6GvR5zM^MK|_T{ju5U8{NKL`L95eH_f(~)gM$yT zw}S@>4XmN)PmE62T;v)2$OD4_m4<3`AmP_?yVRO*`9YR`)P2^-(vMG86F8!En)9GH znD8^2x8o&TOvR?S!S@=^yD)ZrY8|?k59NCCsiCQlAcga=@Ssu_-^GQJP@)YOtUuQc zrPVN%17+9js^HVbqI_Sj&|qo)Iz82Ro~8HBzzG0OFv;N z(*w}yDQsyrnvIsJ)!R*|71%X>UFaKog$Jq_rTQdZA1aY@t7ye{?Z z;J<4tD-qd|Y7X9!irb}f&GmCosd?iaNvef-rz~xkN;MMX^7}RC7z~_w*S1uw*&Gg{ z92Y6}=4Pwg zI$B~YvN`;Q=~zt19a{_^l{q}-u*Z~Qmko|*96kydt}^)%4jEn|he6I^H{vi4nQ3mu zBgh4tooft^WDYZ(lUU{kGr!PaiKEb4;x}B1ryNEcCLE49Y;mE$A;SC*SXg$5S%b?S zmk`@xu1zs>jZ7JKIE;wHrk&v7qBJ3vaKvH68Xn){o#+~I;|E^2#NohWc*Nn5;do>% z@r=`-@j9G+z^oDa%n33%fsdH4oKk4dm^_#;%*S>jYME1d%kUI&zCwcq9dLnqVVU7F zKONVY1cN1h7cZfoaI<*~TZF|Qc^sTDGeg&A`V-8_dCY8%+$D4voY`!q+0w8RlppIQ@6g~@|3 zA@n&dyzYE_beA6$P{ ze-3AG!)&N}SE~a_xU`@G1)y)&7z60)Ko@VldI{%0J@C9&ufP4{kbIj9=wS+iO<*Xw z&n6|5Y8%|rcYBHgvwbH9(MZg>j%c9B!#*%GVn+!1VyPlmZCNgwTf+yIS+=dJX%)9* zv+|%)tRky)-;seHuK~Ghs6EOoPH?-N9jWczEWLS_9bw;g69?$k)mG<)*=%*qZruQW zxXr10!4Y;{OAOs)gnc58ys!ZO^fEA(p`RR*7lM%nF`=d;_`b}7AGr9|rl$@=x_MNxYDa1nr<)`~*$0j%>n7X>uo_MzGnsbQ)u6XfT_}|s5KybH z8NkFfP=VDNN}FaBl6gT|+(3H$wxL2)c}?6nO>8MO zrv>|mQ`5eDl{|bk-n_GioFK9`OVzuZub#dB?Pgv@xv5XiR8f92c+_vI?Y&OJ?DsTq zgHVRpW3s+ zd|k=dijWAO>o~ODifBe}(PS>Ii4!aL@O|B^I_6g9k~xMO0c5wS?DiY=r%(ZQ;#k5v z@GjpN2midVvhp(@5n5`sQ`NWdbY6$QSm!V2)4AzCr-xbMzc8nywr$zt6H9Q)0kUi_ z0Xb(f>pe19KDcSuROEtZ|Pcuh({06kAmSa?~Iek zw*xp^+UX@Y8KU^-o_OSHk$#ibk6*gl$sk?Bewf50f9|5W|xO8uG@%(ge)3IWUitg4fZ^9q;=x2a-)5j<{KXU0pduQ`Dpu(Si zxGm5uTJfDl$K7MC#UO!B{PF{5emx%@M%a(<+-?Lux_$RD1iBcWrL7NnX=6f>31eh= zW@Ue07KS(?v5O`M4*M&dKUu1Oh;{0#xEKcC>j+Pf!>pV1^-g3{z!!3T5hkp*RNA7C zdW&c&arn>)DdEdmjzgfBtEI9CwZ0xCalYv3SMPf;4UtXH(8eKb32YmYg=6ICAZ2fu z*XoXs%_51lJSXk+Q`3y8A~}9aHDL>0tOzAR&Y;pR!^%#OZ}~Q&l_&fU|B#9sxfK8a D0*U7g literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_0xc0ecaca3746a356c8aab463303ba4948.json b/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_0xc0ecaca3746a356c8aab463303ba4948.json new file mode 100644 index 00000000..85015f4b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_0xc0ecaca3746a356c8aab463303ba4948.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "039" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e8d1fd1be96931c2d285ce9cf4350b03b9f97ade GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zc>u;XIHOMHj+k z;hEOaJfuvL7C{lfa1gY07s;ZiGax95GonW#6_Og;2@JH01`WVn)kXV9{fhodFDcE# z4%|4M2!zW{W+uAVMg4HW+b7ExP%SNi}8raLSNW{ckz4C z_@y{1>Ut3|oRUIc2?fE5AgO4YC$!M3D5gYU5yppw{`7I5QIrWDA{7gs4`NhCDfD?n zqe9;}KHbHwZnx0O0hR-KjHf*AtRCi$frBo zKNNZ`S2U3)IxoU{g)NO9Ds3E*1n<3z&yvgri~Bvf2LDp#5@Pf2qxA$=}X z03eNlq_4nsx!v_1_^nn8(l@<=D@Y2!`$eu-$N>of5N8(ifmgP!L^IcDPh!bQThA|0;6KK~{tg?iwga#M2m!zZ2b0ltTT8Q?2#N=TFp>?ES3ozZc!oHG$_S~DwVNV4F)E12*>v=J zF3qYXSW!TqVHM9Lb$dKDXG6yK85$8G&5}>+yDum#JM4uKVVH$8RJ)d80hl?1g*L&-DRZ%6Y5bGEHXeOyx}IeuoSI$g zS7UIFh~mdr%jeETr0*O*TkQU>%RJZvPHsAeQ>NC9uT~v+?o`%Jd&{XNIA(%V4%5`^ zRwu(O!qS1iEOP8XU+~o7(lvY-TkUbmj1ABBtWDHMz@)bG2xhsKu%R5)VYEI5vFX$R z*xlDhO_NEp{6;|f;oa|_JU6rNw%Q0zEvBTaINwP<^7pm4c5xn}^ z-K}vZiK;=+0jA8n6E0<~*K?oGOzF&tw=)mk&IE7gta!aS@p|*%^(J_|v*PvV#Ou$4 z*Pr0^{~Pakju|NdZvn<_b6(Xci^#zvf!To6Tbn+F3VD*JOiuc`exot#!G#~0-Bu4A z?bco&eewEe0(?wP@X)hX8y3_?Z_{~q$hg|*H5{00LOK9#9MOT0y>~*kPY>BSJ!EH| zke$;*dZ&l<<_YPY9@0NOr2juc8h*^j2IJu)vB9`HE9j5Jh7S%oKN~(c*SGTPAcnf{Fq~F8t>(@y7&^ zfv!^Z+7@R74q1>vl}Av?E$<-+n=zb1e|-j7-!$e;5Nn{Uang)rtJS{m`Av|Z2q^(- zPmUEHLZINfuIF}&JkaZOz_=iY9E2pZLh7x)R0@52Ta!hvsK@;{Ci-$ExhMU4=~;Dy z!+NRIF|ydv7mOWftoY>)B&FBTfUEJ<;WucOC~b4cG)t#8)!nnCdfNT4iK-gHEfGNx znchMqR(vOK=}c(I683*@qq_fFU%Ar7&3-|u4YUN?Mzao~47ujK{Uf9O8|1#a!(4p)`gEMXkeH$@!9 n1pfEq!JC3W4vdfp%*IzK$ZOH^w)pnfJaGR7+vL)?>JI<_`O@Xj literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_report/report.rst new file mode 100644 index 00000000..fc930186 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_039/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a066 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 039 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 039 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.01236 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_039/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_039/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_039/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..42e8804c4be13ebe2479d29d93ec7d50b24de059 GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSsj?&grDgq!tkrrJgrbUY8m|rG9TaKi`fWVT3gs)%$l2YPM z`GgIJAQJAMwWDo71aGdSfYzUFx_IgVEMLPrmXlYhj~iXS?GX`^_w6y10N10x#kU43H2(E&el zZNwj2XaMZ`yrcOZR$UJ{s%Lu0G985Z^1v}w&v$h-82N5E9H}!Vyo$sAG13FoG*m&_ z=5-%w0a7u<3@sDL7@@BvWNKgk(2?$!UjI8A0pkgTtAN9ds>&3-F8dq zwt>ZMbLhA}GC~jXeRsc7Q=8RRPwjN8d-eS|x(TB;%EIc&EV=$oHI9~Zf*_EdwydI~vdn%V z&wm?aB~Bs@m@L1Nm1?u1R`;vBYNrmIZsf!*u|O6}^4IRxl~-}Jc`1LK9R_f3W%uW? zv@jTPje5DgC&tl-^vZMrw7XS$X;y2MrrIdCYEUb1>-1!0;?iF3|i0=LjC2rC9TI1|L%!joMfvjpDOBgGUUusZn6j$-$JtXD-D>+J9zx z6sO3bkRfdO3}zv9%|twdT+rxDqkkqcnA$92k(o?+p?->e&rb0%li~@35rZ*cn&3j#|!w3a%GG>eMoM*!^jj`KL@wY(=osfxUQ>#)S5}UWn5M_NFPGVsCKX_$%zZkG6%nyF(Q~M+Uig|L_2w|Kx#ZA0B=6 zmjV7N=^zhN=*WOVNjR%SP}W;OOWy5Ps}SvL-t~ukqIGx$`L^kRGQ*&rk;6*`v8an; zPTd|n)YQDL6;&;_Evkiwg9`_N9~jq(1(v0Q` zKAtU7t}49_&D(EEkf0A)8MoUg%W&D2iQs~tnaciP3VO@Vid%)b)Lw0XdAmch^y&BC zrvlSL7?T4Dhew$|CdVAPq3kw@y8Z0U>Ne0VB5#+8&{_~#zq@!*s@)fG5P+PPa$N2q zT;~;L70`s!N8<(P{&!$SAJ7u0x9T9yS7#NF2NC%Gb49H;RglxY2GRU89sLnglW<08 zH#;!v?mAnH8&E3uU_s4ZLjfh;s6Ouz*UL(`2Yx<<5w+1SSJYO0PpN~dRjMtLQAp-H z!u$l%?X{FTtSYIAdl!W*k>;deA6y7~a2P&59A(z`km34TMk;P(4qqPqA(K>5;_Aao zRg|0zp7d(<)?T}!_PPzA@uyJ`c(}y#AXP}&3|xa7Bt9V;IUsVR-ofq4vkDv@$Vp?F zIEGt_kgt@LvO4Q_F5I)+?7HHS<|7`q>%h}acr+zPX*}yK@nbDvc-1hij+vKP&kVzf z0J2-F?)EC>=THH9XlUHGz%IEl_W$+H($bG?BBazx7pia0bXJGI+TgFp>5b`s!wB`n z?l2d6bzRd(3zy&m0i3o|fZq^IyP^*+9~`_c9Z>I*J4Sw1@2Is#`$@SGk4~dcDo=WH zx)%{#u2kS02Q_y;c_ZLy!D#2wi7>f^mz(7}-2a~>m4-dnwRl@IE#^3P2O`dn>$Ah^ z>g-mneFL|s3isVlTrl4BPJ^Tk(7}PTl~0@fL4@AkRKBOrN~! znZ`dvH+_U{@(_L39SoAeAoLyGg=b4Ex&==LKlrg%JOv>ykXJnCue(}dKe}l;UKrry zbgM2HZzxph^q%j8yT2OLS}&4 zdBhBaJh~JzcXded>X71fLW)<1l&%gbT_>b;b;$hHA@l!7NKzlys|MoX7pey0>TOB? zLe=oILteices;*~SHn++T&Tdn{i$t?d|ASOPK zV$PE{9?3D^z@X-eQl1B~x8jCDqI#mwulj80A)Oo|E2p3dOu&q~BF5XKb+W%VIKPc77@ z>Y|`{^Xf_1%OWA$Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~c+Q`r^`P>xZ$i zx&h~QYTAB6S>IiKZnLV@R#Km*L9yRTrfL8$Cz9X(-Ntg|^XyqG$ckAEXUQJJ3;xg& z@LE7m^((BXHI8TliWqJ{a0Tu_#G~keN^-YY+*B>M&I{Oph~eTOPYkb9t`AvpvS9|6 zZ-9;032ha}BLes7)0;7z)bl!q^ZmCmJWd8`%ip=80y9_F*Y~$`9J}fdX3jo8_W=L^ D?;M#T literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_040/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_040/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..58b6e60294eabfc0832204175987b4cbfce0b40c GIT binary patch literal 1292 zcmV+n1@rnJiwFpT%z9-4|6guzWMwXJYixQhbZu||rBzFh95oPTNjCe+CYy&6ggA_r z%dWKaJhL+aAruJ(MTFrHlmjTT+}+h<@3`&8cF*hvMS@F2B;POx_%Yo1SCqSZ9;}44 z5@o)T* z+a!|a;N1?*BqxPdiFdn%anMvJ?83Vbo-72!GOfx9BeenVt`VMkcWZewqMiQ8yX}}7 zASu`0ZA9MPNR-U@q_Vap)C9rQi(7N0rp7uwBPN##O zhh42KwYa}A@TJ>CrF45Gmw9Jdz?~ng&t}Ur93{eG0 zvPcW2Vvpe^l7nRmffhy73#v{Bm1t5Qc6g`7^*J_Vyn?KCLdVbWK^dF9i5VtT59lPDZh`aiGaW-peaFsg2qefK^4o8 zPJ+QhAxes=cr4Np)_8?2=T2F6Bykw=^MZf?AH~3u@V#Qx6wcOF5Nl zF3AkE2`OL2cdj|69a%mDNoBG|wL1mXSVG87WK#&*DiHSyB?K`dWGpQ;t!U&ndPtb_ zSr((`=VVSfdiZ{~6Ic{7w=!O9Dcx?aBoB#b3TF!;!~)Vacm`<`0;b`|5@dpm-{>Oi zO_}E*L$oNWye~9v)*N|*S=f3}K(ab^GizkTSmfYeDP%3o-BF?tyi8A88cZpy z39&tCnKC{@TAs85t-{vvr@JkDcpfS;h(jwvW>&k+>Can-`1Q$8Zw{lHQ%8;9cyX$^ z6a~XST+#BY`gVbdu}6nrDhY?jyBNpjx_94Pp$)8UwpW`LXiiRFzU)O6o12!mw}!{N z7gy09u(q3P?G!mWgLI{xgx=j=nP?;W#!YMzodJ?^d*Q8jpIzA?aupj3746h?I^AJ^ zfQs)DVl|T8EC@~r68JRgM?GK0?to9E(m>!mfuiEkJ9o40bJd74{*^ys8Ds2>32^&O z*ICNk{*x5vP}kV!Rj{brswrXo*j*2&k!-9SqkC?TOq5;p&|h&`Z+TL{=t4BzCJIh7Bn+&{j6;4@aYZzYo1^ zM1l4nXI*&I%d*ZOi<41?J+3;BQ?kil&60_0rM*F%bo#?#+&w)_hn=JgLl_RS$HRCq zff5xV7Jzz*BK#F=7(+$JC$z=-X{_AlWNB;mu?TWH<2><|# CTXG}- literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_040/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_040/afni_proc/_report/report.rst new file mode 100644 index 00000000..0e56a9fc --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_040/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a038 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 040 + diff --git a/Afni_proc_through_nipype/_subject_id_040/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_040/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..31a470033f9d2d0b4dfa1be41fa6076e269e5216 GIT binary patch literal 2890 zcmV-Q3$^qgiwFpT%z9-4|8iw>b!>EBVP1%&Re?a>S`qZ-kiCs#vqv<4?(cs(NvuDpadv^ER<+sa!`}2oO$zSxbV|r&E z;!P(&{y@_a=KC5(JPtk2^@BLNE6rQF2!~b>e;;rBDgGv2k5<(&^0DbUapS?#Ox>+a zPaLgXRviYWWd>*b#Me9zI>*uKVd&@qQSyBpt@xo6m^O+>OVN#o&@iH-y{S)(I64+a zu8oA378-zceZkRu538<+9Mv;DWSI`aLUrJns^`198jO559FEk~5<$gb|0U7`)ihMG zBnsMG5bQ8QUrX$0eE!{E|NZTM{`)doL5`sibD|FmVxgGJ7jpTMBJNg-<%*c+i(-Da zkdKMj*z}<%G4qD}sNQVG(Ji5GIs$}p1R<2`vMhDlYOC6=HtO9t`rLAL%@RV#oK_wP zf$a&rbWqQcvXC#7w)2|_Oxmw%2K@(}W~ZyvyDh+hA0pkgTtAN9dL+rpL8q;BJ7C3a zbLhA}GC~hRefOl+P+RqOPd)0^52cehx(Tf|%7OQ!mn?lzkE7+hD2k+}BP;D{3u=Dh z1^t{@EEJ(3&zru9HGTj?-D~vfvT`WNkJL_2IqE5KbmIkjF4}Q)M~2F3PkE%uorA}5 z^eX{oRtPcjh4QwzTizB<(V1^LLjjWjtsKhDr=SM{4MM(`Qt)J8n)FTOOx{)tz70Sd}62DGYQl7=p=B4=Yb{N32%AL%{(!yZG zH>GOlun&Srf#H5p+$$9;x<-ZwCP}eSaRHPFz(FEes-S7o zy->N&2b!PYJi){B3~Rp5;FnZJqcYY=qxihU;1PpuDim0>b1-G_xl8djtv@$CiZf(T z$QW$-3}zu!&5U>sv7n)R9$8SGIU47ChT8TlzI!{`T03!X!bz~cpcPHkm`Jbg;*-7&?iZwp=*7@<>&Cy22X z3e;(ran$xo6qnfHn8MiYXZWiigHFhdW>c(T>c4L@a7@((me?3=@^;Awu46@2tE z!+7FlIIt-;ywhRMFmbS0!wwMYgGC8a;h@Pvne70Z7TXNP1skD^wK1BNXVl=J*X`EZ z3PTMV?c^xE*;V262d;AO0&4|A^477`ReIH?T5li6(MJ~qd<3l22vcGVvPxY&2G)~s zo8@g$1b%S$Y4sVL!8Nre$w$p9kc3+^Dv$&Ec84;6BN^!8$1k44`A-f!`^A@^eLBFO zB^Bf_g$fQBN@BB02&L2pv*d$ry$+*&F1Y?sNVtxmAm26}U}jkN5pslLxv;Gl3VC&R zu%oFZUE5YQpu}oso)r#F2Ma^n%fUan42%lUj?Zv_>>M-&nq?uNWACL- z%5|l8MC10e3Iym~mc|`4t1?X6G9g^>Nm=$gQ{Y>6uCP^}QSH?xhx^Jp z2xD>=;qi$3O>)DLo613xu-lKWX19TE5qi5!h}Hth`sKw*sdtazA^-#H}A9!}T?;xV^!>c>3k9xg?7cRqtNPqU2`q zu-A~o&oR-;RR7!xcdQszTCc;2QiO(FvoGyCF~V9n`KouEFJj+%%SnVpvkd z_*zw|s%f=zVa@XCyyB7OBLTMSz|&3zG$praoYq!^v6fi)s%DxUsg|@R#c(5l=r-yH zy;}7NWPlzT8vhkomn@8vzrV4x^qNhCq*~=d_RTC!^YABY{ON4EGW=JxP)+O(bD>t( zHGQ-&1s4p!Svdpviovv3)WP(@#p}`q^)6X4@?+^pZ8SR%tIc?H7QJ74*psuph~R3i z2KP9~xsQ_<0Z$7?`n`Ba4Ln->d3``qY*b=@kB7XIa-ZYJxF#?2HQ@dX*%IFSLU~P@|Gfs z{6H^m^V6NOS}x^gpNScaazmIEy}%dYpj+{LG)^9WKDox@55(C=hUt@6o@xADbkj%J zCWq*o?qHBK2BGihE}Sjx=oXv|e(;(np2E&AA$?6hjZgl$ytJgu zi`=>m@!()&RMAxVy8-nGOf30fTbf>^Y6w=Ppmo#nhzyww z5Z<4CFV4#~rstKjb$ti&1u>s^z!;c%LNaKgnZf$T|EIT{29~HulQUU~v&>8szb*hj zvYQ35R8A8svuE8i4Kh)9BU>+lf0kM%UNIRzk{x0imTaucwzxQnJ5;SFW+iQ;MgM%sBYE5RLoc`ud@3o+XpRm?aMBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tB$D{6Yjl_#saGuJQf=;yw)9_y_<1wvHjt literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_040/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_040/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c0629f78fc3baaddc539a017ba733eca39766cf8 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b6gLzmg^(MBa1m5hA4bbV zcH1yJdm({Vs6vW@P)qs%4^_j;^2~U4oSm@;+p|ePk=hqjB)@g~(Eg+TivE=zduA^Q zN(o&?QD$r(pYJ=zpS{PwT>9gmYZvUJzhpE!%7~lMj3ks1m$1HhF&+|G=u5lsE`Bc> zzZSpnzBwUkWkx9fe!q8}eU{O|Ln1oWIVh+h%f+P~DaGDkR);{+kB1UCQLSzPb4rp`t zVbXw*3{jTlN>1WkOL%}2WE}=E2?k?oH&U#!gsX)5$j8BeFu=O_xZj7B$&wsa13rEL zLKt}85hUe9f{bd$>7!%{=!?oCXN&|yN-T~La4XqVkhc|d##n?10v(_bD=gt-JbnvW z{e&1%5gZ~Qm|%ZAx@L1}mJ>npU=T*KLGl{pCKb;RXOI~o6|!~{W~W945jmTT-pHj{ zwFD~)>@%$5si5wRrsizG_yI#hBBWXJNq!Fmg=L4mFeD7KU`lG&Gb~^;fjU7=CTWvI z+{}2AAeopI3v+?3jPzU^1amlye2DxI9bgI(e%A7gipd77FP!dYh5edKYz)W|W2-|nj+h7GmQYI_eiVH-$* zMC1Kd=vsBQjJu?3wkTCc?tw6_O~{KoISXun<5T8xrPBCkeSI|g)O0=1NH8(G5>;bx zj)>x?*NYb}gd}oKo-KBN*JbYSgC;i|qbZZ?#y86jJa;Q=r?u@=6C5+aDTirlcB_+N z7GmkZUluxcAQC)vxO9ykMppZrGGoKDeQOg&2$a-v9>FZv3O10#I*iswBsQEH5WDy0 zxM?D3mfr|OKe+eo$qO_4p4UQfYB42UC5JV)6!s*X>Z8$sPm(>Vy;QZvDe&rRZ?DFg zB&r6WeN35oCtS)}ujjs)n$n(;Z+jNL?J?i>dHHr`~*0kTO83T^tb0I>zl^B3B?*z);MW~((_tdoo*9KP=u6#YEO__(JSh46vsqgtxE23zg~D=-QciZ zDC-zm?CML#4r;9U)h-03S5Tj;(beHMXqGH(bJsLWr#95R^MrcV{jiCu9KtOTK@yv% zubE3wObb)PT3~s^0+`RtZS0+1He-_K0!q(ay#xifu*Ekt)}~7BvY3X@ubl#e6kI8@ zRylzxccr}PAT0XQv~R;+K?f8rUdAlv7yuHWeexR0f%?-x(L`}h5`x+2Dg|-PTiq7lKg)ghUrH#x7wQiH0H?R%!T\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_040/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_040/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9443791465692e12bf13f75fb485b2079a5cc854 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grA_61;kv3f=rbUY8n13cfTaKi`fWVT3guh?`ic;eK zT&9D&pm%+S-t>XmH|Q($EJ$LPl9f1BqOphH?w&p8+k=C}x4>VP|NhU9my*Be6UX#U zJ;a$#fc$}`Bh2+Rj5r*6p6ds3bh|zu=^`9jLHvEZ@z?leydJHpW8`Dgb>iB?rJ1`M zsh>DnyXZO$Ov?;Txf5UWJeV9utGl722gJ$uakS!xPGH(79xX-J9>KtfMtf5~G2&>S zAGtQ-k1R9*c75K_d=IOxhaA;2J!F{(&aJJl>{^Lark<~I|VjK69a{O`0I?XFVoHUS5Ih;-L-{WyB-aa~q+ z+AXEq1{OEXq2v0<2tCO6?Y&A(ZB|=7wbQNc*7xG*I*i&V3#%uy#tk6Uom#IdE4y|1vD)q_ot_d$*ACEr&W@v7GIW-E z%41b-?>vd4k9oMfe29_H7mB(2g(829PJPoE@|YxOWmj%I2S1Q#F!K3nb_Uo=k_f*i zCNaCY*KAknyY*^U27(Vwd)w@XWMP%6{6uMY)LEW^N3t+jV6{?L+K}*DiC^N)(Hu99 z-t0WD#L+v8B?Uwp?b>wFtF-fdlDGLKoQ0wx?y#fEiw?|PInhon&4HS|_Ec%qA3+MI z%QE`~iT^stikwIqFj;;fE7fL2t?pHK)J`2ZUCRqwLV+xn6PgMXm_jh(yZ1hO|?;O)u2}3*6GPyPub1hgA4z-O%{G3 zC#yZV+P#pJ!tI)hz5!Fhu1soUZMDPO|j_6!WS#oPl)Ea@5v5u7AVq2vOP z2*5#NDV5M9nJ$z*;{wf3aGv1dS&B7ZXYdiV(Ws3z(kMQY7(8OIO^pJJP7WpvK65E9 z(*85kqc}wdg$!ZKXD|z?YbN3u<# z*k`cDECrq)R9$8SGIU47C(b82brp!}teG8=gZ+;PC=Jqg)vyPoL0!cT6$6wuMy- zjL|X0Cy3z+4Z3KTS*Yzv6iaM4rZIN=DgHW0p%XIEY>G8Z*YDd598)&~OQ-f@lj&zM z^*OXsXizxOX{5=Ck>XQ^na->h*#jmEV+PZtYnndWCIN>j99T@hEol^+28&JFIA)AI zk-^lFI~=Cir{*Wxm@%RKt{398fxStJC)gXz8-IeG_rd*K>9bGg0A%HHie1Z~*f)o1 z!_)jAZTRRY#rVWaabQzyc*n!6Vd7x1hYb+wgGCF{;h>X+Hah_}Ep`~13ml=1wK1Bt zXVPG&*X>qY3L_0_t>jU9y{p30AGFGybJ7(A$y?9rU8PrUsMXf9IQrO#v^6eH?038|R;wK0D@cbta zJp17Ai$4zV7fAC#-r9+y4=<`C z)6uQa0D1Lxv;CD?Yj)I5Spj|cfHAe*Gt;s(-m}7?>0o|nds+BTP6Q(X#_=f*ke!90 zK(j0aa_s%-BIT;m>(IRYssssomz8lljj{}vZJ7uz_?fEgcP5~>?5wa=m`Ux`2AH=y zBugKD`)w*PErc;SkZ^dE`F(QCksHcRgQ(k&Uaf8e-6HaKnFy@~k@cJN7p2;L1_uGi zX(`X;@4l0TPJ7x1TC%y{Uqn?lp+!pX%uM zn3{w$Lc7_4S-02OV%&gIxdRJo_8JN(@kaG&kGNh|x;^moA&jVvcDbUq>bpuERIO5N zk&Hqz-^k5QAl+U|sl%$0nz(ab*b-?@3ij@~u=@w$!-G*~eHR(7uVuvIM&{u8;qNj@ z6(z3Ty--ET$>341R&VXLD{8OX02+T71%Zc4JP%TZl+D03xIy9*qLBk4N9rBit~{y0 z;enhqmWgAyr3m>-St+a2Zs*)R%T2E<9%(+}VY?1I?U+Xsa+Jo?-V#675{8!z)9RRd znf6REoCqMhwdziI;PS!2>%sx`Ho0TuC-sh6YqTGg8}aBg z`k?ZtC#QQ6!R1N?&T&w4pCoStJS`Y)UpNsaxA1baT!;JrgQU{1=eibeYo^5<=Wap7 z>2ZB}SY4gosr!(tJ zzLJ?u$dCz{>9A>&Eh6KQGd|A1KhMY{0|Vc+GcM*xHO#G!T+<;ou6LB!7y}i`B%j%a zS)i#jL)Gzk9Y)vZBsMc^KrH*sOP;KRpJFx8@Nu?TQ^@RWF0Z07astc+c)Z4uOQ{8P zIWw@a0T6lHYX`yF#<}1#w7JE6~02sS9o2% z;uZOdSK%wBe8t!0D_xPVbQQi*%2)bfzVkU`WJbB1U=w<$p= z&}5lA**7m!;`8DJ4~L1>-GtQL!_CaaA>!)p;YJ4L zl8_moHjkKrkcSsS<}VK^Tpm)mN=V`IkmBVb#jAuAFAphQ9#Z;0LX!HpS~U<4KT|aj zSFcO@XR3yu9P;Yb@RLJcy&8Tr6g3} xdG@`n6}_jb0WrbzPl+n1&uaxvu&q~BF5XKb+W%VIKPc77@ ztBZo-&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMzzG2w`(u9_bw@_1TPhp{DygeKZbYyE5^HfA4Ecm z#GZ7!_SiGOnfcAk&)0wFTklnm`$&r7qJXFn1!O`(1acf+QYB!#yMBsq|C>Mj#lP_f zZknXedw*g0Q*_=9s32CuLsLet-OLb8Sg=VTdX~ zl6hJ%6+0X+ksK^n7{@Iuaxj+Wg?IPQRE!=;VK^it2vmvI)*j)d2|z)FEJ|yZ{_bUp z(Tr3I83#65K)ah$TV%>+A|^3q6Od@@+T-yUGgD+GW&=N-As~vlA8N?e6iDF8B76c? z41L&~D5V4j#!!7h5L=C=G5NsaCZ{?f=;(wb)KY^V3;BIqjWY;*0-6v6n9+D4-K%05 z(n&CQC`3sy$zFSR&sbFuB{4GESW=x^BD*Bjpi8-w-YreYT1Krv^aZti#i@t$tEHSs zHIrlt+JuxZ<2%y=(~c~kf~1nIQ0-1ZHI@*v6WJ7kwhY9*LS-2-S;$yYYFg3AtznJq zo=?*lJwGQiD$v9CyPd$Ikh!JtT1)A+b0tMcL{m5$2qDfOS%GJeHX&ddek?&UWc*qe zS#Qcb4;i9GQRRKEalPiq8zg^KS5t}wwbAW$PKHmC~K39z><6rp$o^sC5cm{5_ z={gIU+kKqi9O@eTtO^!&8#N`2KXuo`X(SsjPtiTML&nO^d+4vYtnpUM)3B^nS5CjU ziqro!Bip2jCQeF%;cTx=*)41+I@EDx(_Bb~S7n$;@7#8f8C7a5zf-q`O-EM^2p4-R z?WS%h==<$UcF_Bqb?6!;=z8kD|6i_zj%*q#Rnyi)Ra@riTW{P>Jxd7HV-xzy11uym z6FAxeh%(NFwV{8#a~nAEax#wn*I)eoM|l2pn?zP7LnOAVA%+bpG|<-ZsKp~`Q?!Wo6jH7=55-Wqoa|r+d D9w%=@ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_041/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_041/afni_proc/_report/report.rst new file mode 100644 index 00000000..55a8841c --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_041/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a032 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 041 + diff --git a/Afni_proc_through_nipype/_subject_id_041/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_041/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..56e5f15f7cfbe7c253fe19714e8b1eaa1aded44b GIT binary patch literal 2892 zcmV-S3$yeeiwFpS%z9-4|8iw>b!>EBVPj!akS2}O$Askvk{9U~9m-yRwJz7;K$j7GZ#El0_b9J{e zJ#n;lS#=ngmKmJ#Q(yBu=p09@hoPefM9Ft?wBmJOa#YXskYzdu3)P`xs-ExaYB2WQa5Pp^O9T~%gO^ATRMSw! zQeM!`1;Gv@^tHr}#^?Wf^ws`9|NBFKbJ32YJ2F&O`^qC#?i@Uh zqu&THvqFfGFO;{%-SW0@f=+$Y83~vKXys6DJ_S7xXb|#+G&)0UB|(Jm)FfiJk6WFZ zbSTw(G8p*4wD-+HNF1xx<;O~=tIp#Lb|j90gY}xEbRgh&61_y5qd9IIz1e+Qi=%fI zvk44ob{eVEtF-bx61VdyoDW5ZxW~3C&$`feWvZQ8ngi*2GOlunD0^if8VZ#Jys%g59Kkt74pk zfsr=tiTR4oVAoG@o?tswyS-P+S8%vL2c!L>xK}Dxbd3xVOp{`v;sPiUfP+M`R6(<( zd!cfl4>Ui)d4fl08Pw@41KZ26 zH?S!lG1#Lx7-<=vG4eB3hS3k07CeU9fWaz~>K z`&4|YO&Aec?|LE53fP-vc!s^JALB4G|z|64jBjgCha$#F96!Pls za7R;1y0)!q`Q3tA-YMs|kyhL?3R@5bAa^yXN0`L|w@cWO)INx#4=%GK)6uQa0DARy ztMi50Xm!j4Ps+02nE~IjbA_$)oNBK&LA=u?QTpJUZ!&^u zA&kjggvVp&!frphn%xGvMd(>`2rQSP&ivYy5lIQa~FwZND z7f^)TNAn1H{~O@ZJ2VBPwglvSHO+t$kifT}D5}&_fll|Eg!897`j<>j!X2U0>O!x( z>ufS^K&spWhg$un0!+MFf6^zamz7>0^n3s{k$}}I^)`tp1oI7XegoRqy8o2ua4Ln->e$7BqY*b=@kB7bIbMxcJxF#?2HQ@dX*%I7SLU~P@|Gfs z{7^4$^Ru0@S}x`0pQ#y)b0e4)y}%dYpj+{LG)W$RKDox@55(C=hUt@6o>~0&=%$ab zO%BmF-Qh543_{=0T{v6X(JeR`{NOcDJUhGMR=xx_oWFFn$zu!LLI#?C5+DD2d1*;G zFLLWP#Djy8krQx`G8SiPIM}G%=D0)CLfqQxLYrn`8rveD&kNWLP|gFr+6ZA`{(wcF z(#X>i5_H!`ymz{`$r0zd;_l8SXF43D1`Nt^^XD{fpTo!+@+y?oOvU=Vbt4g_e_y@k z@8@x4{wgS(zX~!QSJNxI@)?Vph^dYE+;R zi@AQy9J&1%oeo^hHxPK-+}eSWvi7tf8yukzs2Dox|!rVPM*u(&ekui!Z`ZDKtrNnon#*@=uOBH z@}mP*VM~XAq|f)8oS_98sY*6ijx%jSqc|GjG-FfgeQpgBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tB<$LYL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=_+jH3_y_<1x@00F literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_041/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_041/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..63caff2ac8a9f6a52a6c66dbbdb93a5255d759cd GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@HdiX?j6B40{mV zhuB*x%a^3>hGHlXq$sv!5ADOS)F5byvKULGN>WbJBEa@itN`DpJ#7DIzhZx7hm?GY z3$N*1A&5ls@O%?Vo6XyMXndzTz~3w7Sf)@U5a@RXcdi(V=nq(%#Tq_1|$ZOPY?Eg z%=KEPXe_5XuTiFm2(eG5t-&Qy9ECInUW*})CA`;7FHj)9;sQe1s7E{@^`n@CT&OOP zGzOBs0^8-rZtFqY^E?RO^a`#ZC?Ma?GrdAih!2D~vz*txg$DB1UCI0%Qhw251XA zFsV;SiYQAnCCBk@#@xp-vJU--`27*J8wplv%vDUgsEhqRVSsh{ajyp}lg1gW27G)E zgfQ^FBS^vr1R2$g(nrYz(C4K^#u)L5lvtc1;8w6HA#W?_jIan01lmUdR#?KvX#5tm zdNDDgA~--mFvi`{=%&r3SxyAWgFzTc`|&G~n^ZhSoIz%URLI(mnN5ufA~H4}y^%?? zYB5$6*r!-U6G7b>PR&@K@nePtL`bvbF?iu6)2j(*)GS1~ah8BW zHzvUZJqfZg2@~XHMwkzZUub~pWtJpng>ahMbsu_MEHrWk;Q<+@UyEu${!nk`Dzse3GpYZLPFe#U$o;OLb3v{Y&Iv%WqYeQLU%rNkebT@A}I zI7dYO)2ro6mjV(x=g$_qzpFCq9)Tve9iu6e>)O|=4m@{DYp1d2loK2?!6}AmVs@*O zVisWOz+W0Tb|4fyakzAi9)?y&oHAp>(<5sWgb0+>a2~-d*9z8`gDQ+xha|S03J|;Z z`mAmusTbb}MBl&n!;|M`_C2qG;M8JDx=IczZXxV(IORvJ2A?E-RC%E)wJGrO>+rC` znIx(Lpgl~PdB020(&%G8H5d;cNe#x;MM-}oHGDAS{A&1M$obXqUdVF_gbMmS z$Cxcozp}=Sz3C&%oK)7|@G-~M)(f?@?G(z|H-*Z!6Tx{&MA160ri&7=#vhYF3U!sL zR`xg}aL7U#RCu)Yl*4K@B9f~!mtZ`fqq~|s6x7u|mK@m~{sy#WZ z@DPFuZr5$O%{=SsP1<8z5JXOVlG;M*t-e|m`u4Ua^G;rk!YCqoy)3y${d(zHd4t1x zsiuhF6E*pjoiA%>&acoZ3(iFB0mk`(YiGIfPpxf+W_b zubC@QObb)PT3~s~e3;M7ZS1XHHDi)z0!q&Vy#fWdu*EktHYZB$qL_xzuT6nL3a%De zE1f`W`0x%n1r68_FtK0m$$643?7pd%Hdg>1V0BRrT7ytkO literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_041/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_041/create_stimuli/_report/report.rst new file mode 100644 index 00000000..9fff31de --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_041/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a032 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 041 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 041 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012978 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_041/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_041/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_041/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..057e1f02f79a1a2ad0165785c183f165736d4181 GIT binary patch literal 2843 zcmV+$3*_`4iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?%_bDgq=3Q8ra2rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z``8TLioW$Hbo!V2S9%vDu}jHHoGMY`;o050_ny7DSeym^y8O@oe7cnUMV~pQcjh6^ zbOPk}H63BDr(wk5(DPhBh@-pGe58YLXa(^<;*Gz>uj2J+RUIK8o30br9xct>-Aet$ z(b{F#VPINjaK?>&>S#9Ift$jvf#v|A?a%KXd}qM)7bdy73qWhBVsS`q+r0Lw@Mm zh(EDVAK3MHNAo?bx*l>=&-9RGItcUSzGJGM@9JtW^xbeURHsaM6^FeOqz9^Ls5vpu z>ps!~q+*B}S|*S&LSIYB)V}^9-um|s+h0U0$T1YcDf+#T6AIb9kj;xq?qR90RmzK8 zVXG+Sb1^X+nLf-UTyMxvs`Yvt-Qs(u!$UrYkVm;H%TlYUHpQTOFm^X#fuV5b3Vv`f>Em6G>L~T1}#`Pi8y;`>_EBliCL~V7Ic2|j`8%O9cXUEYU89K{d<%ue{ z_MXPkr#xI3K7*aT0mf0(c z{I@~2z!gXXCd)5nrP`>d)r0Du+LnORjl8fW6v<*q{#qSLc^OBWm-5HiVF345_FxuE z3xgq7m&&buA&%asSEd7?)v3};vs$Y()OxvDgIa-Grz>+^Wk34>F8q@gS@@-#tajyU z=TcIZU+3ahT~?F2l;eZ{-dtMp@ouhUn7g_BPC+bLP6CQ0d$^m+l{|A-%`IhZi`+@*M%_Me*` z#VIl`@#Hv=mPm`w45q_yiFTp1%zpU{4HL@~Rzg;fiT(J94a z#BhZMU9`(A)b>P*MK&DM7`eR^e;cIG37Kd%#TusT_iYA_sGGi}Q~Qz0^s|`y99Std zD4ggt(qwF;_>5tuGpj{*pUJ|A!8GZbrq8xXz+npe7SnHw8pWo;Vv{yb86&U2VCu*n z3{vb<^RYH!OlZIBg*a_sZ<68(_WJY2Uts6md6+AG`S~1xtUOJzYZ(;#<{)i&njfSM zADyHakG&KJHpPZ_I>;I(4i+W08ZWfj39xCg!_Zvd2yLv5(5yX^27BF3 zr`l8)X;5n>kJ6hR6`uZ}RqkDot{_O>c`kL7Zn>^jo6qCulM4nu0u5_~Q*{isN>zOh zswdGl%iFme=!3g2$}iy=Tv02M+^&~FB;1-wfh@?kJ5&L*Wsr-X9Ua2+pFHsFqvNms z+{a%f9pqsO9T`w431^iEN~sC7)=Zy*T>#vN|#y-3kqm zSMN4j->9`lTWyyW(1$yWsqLPdmZkBY6%I@X^8?$n1L~y~+RAs+60lj5sg{|UDYOmJ8ywxUI`uO|r zQ-NtAjLCt7!^6xUlVgrtSN7^e-G1_VbsOjwk+;i4Xf24W-(9>Y)y{J`2tZCtc`pBe zoIRLTKod?M_2;1b-+~prM@v9zN+8ZxrxhTA2z>XMqDl=FrXsh`P73z^g|LT5;iIErW_=$SuCHYZ+Z&mq7sr3dBvq8SdjC=t zB`1T&-I~ zyS3_Gw^Duv6`+TP#(fLyk{jdTUvDif{m3RlO09IE`esb0b@;0d{(78VoBr2~P*3a* zbD>w)HGQ~n2`&)8X*&h@HNmti`rz`x!Ryii^)9(%z9#&VU zw`%PhxJ6aC?|$Nf@uqhc4B@F1Myo>?2aZOTam6cw;mzS{wCX{zgEQE6gu3a3lWdXO z;>f#{T#oDOg>7!~pr{tb?CfW32E*(Cu8J;j1$fY{cs?2>Z-733gEv5sXCE1+PhRy* z;=e~XeS~fD5PjS2_mjaO^c~%WXG=4>1y2S)__0?!BK!vj>XrHHu4dSaZkmo41~_@$ z^KO6k4ok&>A0M2rE-e|TpILmnr1nhh*tp(FVq^4GD3g3<7iNK`(hOC{ zqjeZvpOe_ktO2p?cdvM|5`K!+K*OimMol5Jv$?#AM#u>;7vRwvM=qrn(B;g)#s)y- z?XDdKYa17W&(PuFn(JT`tU=I$W;*28axq>zKIRl=if~Q7!gcrxDPQ4D`4+Cpw{RW4 zg_LjMP5Fw~ubA=`f1K}p4jGvet^mhIKjhlVs$?ub^mxXb9sokx_`Wpfw?4P2B^&= zW+3G8rI7inLkd@i6s{9exH@Fv>X3!&ge+VgQoK5(_MvwARd09Y9OxOl=LrD z4L>{N^{e4$hrE6@{A9?53Jlzz+Q!J2CH$wvIA6KAWs#jK@i+e?+t&S~;QnT2T3P#= zh0$ha2>T`Sr>(_mdQ$?4@h?fh^GzpMU#qwdf=w25%FH9kot&5_U$tg*$jSK)KA#bD zp1ko$j`;=#HMd<5c@TRmZWtu0C;IfN&xRh-$sw|G2Aa^+6<;$0WXRAo98-Y9YfPKZHd-3HkS4;jtT5fNS7{{XGbeHytO0004fiKhSn literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_043/afni_proc/_0x8b492afad08c3518e645a7f19af0f63e.json b/Afni_proc_through_nipype/_subject_id_043/afni_proc/_0x8b492afad08c3518e645a7f19af0f63e.json new file mode 100644 index 00000000..48128f82 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_043/afni_proc/_0x8b492afad08c3518e645a7f19af0f63e.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "043" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_043/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_043/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ad3e82a8af09679067436dbfcda806313a380a96 GIT binary patch literal 305 zcmV-10nYv(iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zx{HG1&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMD~*vvXd1vAuUmQ6zY&sN^@y1NN{=(4rbNI51VVd$_Uv2lwoA)}xwd(iOA9)q z30yyoDv4Dj;{qYAWmFh^?}S~10Etx^z1ZzAl|$!TK&G^f5o9=E_!~UC(H-bPo`bP8FT8tru442^a>F1cL7+;sw(tQ@OMwB zgbGqAOc*5NIkfvZwS`bt@R-Cj8G}Syx1Nqhn3+P9m<{}Rfq*FDeykx^6Ci;r^YC$4 zGW20{qLdO6Fox<&g4k*_jmbwAHyPC_K}W|VrIs4}n9CpHY9t`=31~_XprG+wx>v7OZEZ%tcz*tofB{4GESW=x^AiE~jpi8-s-Y-qanxK{=`hr@vWy@ttapX-Ae%KvJ13QSDwqHI@*v6WJ7kwg|+7LJ2{P2pLODO)DC?m188# z#UzW-^9wSi96fx$8wD1H%q@)9T1vN-E6GD5n!;H}2(f^437$dPgn()Iu>_eQ<5#-K zdQ;|k$Pg`xD(^FmYc)r%ko;9$O(+)BdiOXw9bg$4G)d<5=G}hNQRZ8w9ZHnj%l1?U z)xqVBXQfOk2j{)zcEeKky}LJ)J`YgYID}}6uxjRS{f|u!0OM@we zH6gY~EmOwlNXw&EpjFs9{B)~@56?qI261Rb$joZDIsJKSAHP2N>1w}SbLyZG9L`QP zm)gPb4>z>@y1rdtV(h{GmrBC^;TFcRx$fOJH)sP(o1Mj`1)7t=t5?VEip@>S+g`%s z-OHP34_G_RwN8p0oj|(KPD1bQEKGC|ed8uJiKyShyw1G!?z0;kM6P0Ep`w$TDC!P- zeN=p(5UY{wW=3#Akidg>uYK&x*zNI=R2m3eBv4d5dgt!ceXbf&#=rIlEMttFGXZX= z={j?n+j*Me9O@eTq6!vu>op~eKXa?$G?I;#XXu{WCL?8MJ@i*x)_AMsSy?Sr89qPEUX)a}gS7n$;@7z|98C7a5zcaUqO-EM^2p4-x z?WS%h==5M`WmYeWBf=hkuJjED\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_043/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_043/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2d3a0f5fac78bbfdee53307914bbbc63f0a488be GIT binary patch literal 2538 zcmVb!>EBVP!k#-nk1u`?zBf)r&@Rcu;>XpF&&2~d`Ag8_jhxi)Ub0wkp-o%XRa=u^ry?>>DrDs8kySg~_OEjb5w`b3uJ?HFM?6>>3<$wMB#Zvy4-tlpG5F!ElF^UG3 zjfl{<2ogvVhCvi(=?(R$r;AA9#@UbA{l8~FWcSilbBrQ_13zm#UYeV`w6K$wi%D2AQ_I#nJ1!2lKwkn$0l}6saz7RBSrAT zNg^xvqw(n9=iQ$!|MPCTf_%rI?xeqyCAm~6%7tRtkT$EO_3HYjAZ<$JhjK>M#yEnJ z)XfX}Q$^FV^pe=ez6hxtK?-$6*VT5*Y}Q(}hSJT_M{ZzSu9*0ET74|WUMLFcj#8j) zu_%`}iVt#__n*}b_IKJ^yK5-jCg3t<)S1>RMOUsR;>w=FT%KAkVij)t{Q}p3&(US$g3OdM$ZbdQAsmt!F$n_4dxQEd5%9l@$|$BC)a| zZB{nK_vj$P{!k<|K`Xnu_5$ocqCqJVXW1DLH%}t`PB2xwyx(ls)m>HT>fqpG>}}(I zLIbNS`ZJ^5G3R*(Kk~pJK&7r4ZAkdF+%C1|TYiwG=Q}UzS$h3=HGv~qyDE!@k3lF2_@Qq!TL+xP?~j9 z*;jVVjtV|qD9Y<{g$7IW*Y2vu%Pf6xDu05P#IUUj`}4W1BpwNxT5In@Mc!g7(*@A( zDr{+18}+8C)mjax71%XBUFaFRg@>^4Pun!`Q#o1f=}PxhQkKs$aY@t7ye{=@|GyWP zmLjq(RUN!76}L*|s_W;VQuRjLl2i@xc3Ijgm8vAjc&n|6!`^U{P^!XbwdYj}K*cdTp3jqiKm0*8H%;UR}ZhU1~Nz*A0t z%Ik3U0kcNvGbhOS7(Qgaa!R2+W%6LmFdy5osAW#+J;M{k`3emdbif7bg=L1z{B&Gn z9P}6XL%e`~!p-I}Y!McJ5nld=P|Q6bQjQJaB8!erW0p@4>-?kE?VRb zxGao0%#vf$K0F;o+hYT2Z`cMCjcDlS#P1vB$6zz8@AG zOyc7beuBgv9M_-%A5D(6`2q0J;=7@F%tvSwYmDaYIW^enb-PN-;HW{Pl^>-SyC$6e zz*TOZV68w%uI#B@qgT^RrL~u(U!72h5U^4wnGs{qH579XSWnJvmNz5`_`!`AwU=-P z*Uh@BceEOigiCWOPyqUNjWK|Z4s`L(o7Zsu(*w_Y^Y*(x56E}9fF7nGSObQV`)pD| zskXo^eW$A^Fxw+Bh=yX$bwmS29`=Em5j#T27fTg+!_~0xWa;hG>awPt~T4R%to_gc4`Lj!!1tL z3l6dCT4LxXL+lfA=!FINrF zM%nFGXS3Vbb}7AGrbO!)$@=ZdMNztYa1nruo_Mz`3-U1uer zwp1YJtFsCy0|~tP+%VOq33R%rQO-Z((VuZO33r5cvjd}U+~bS!K9tH$2&mc93}E7# z^1Me)FB{z+*trcorq-_2&6c`rsK9CsrA0Fe$vh{`Zy?=X%TOVzye4j*B({{A(}Mle ziD_TINglr$t=-#2P7qmZrH%V*Z(h9p{aRi{xv5*Hswlr1Jn1#m)^59Q_PQFl@yAgd zhomZsKvihj3<5_Oy5*7@uCbY}X`=wX)lFU$$4ZCm!}*bJ-U zq^qNV#J)wt_{bB%=;CNKT@9hw!5DmYWDWbtv``V&1^SjENy5M`Z3xqc6|+(<%zq|0 z9u$2`)WYn?FB2SaYn{qN4lN%WLq5J^C4--SjaE&W~I=*WO;c3#jmyAMOe? zi&lJZ-f{m(Yd%Pz6Tkk%ncvPvhY|MUdw1)BkM7>T41vyvXKC|OUfP&YWWpF(o>|%3 zlZ63}NbI69g2Vm_=TDaEpJJW*D$a+&_d3F3iOhaVTGqipHTLRlgWZ@V&I!M_Y=CzvR zW3xzNEze0S{me9Dsz{EWQcc)`7b-$YkTa;X%doOzBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO4tB<|XaL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=joC~>_y_<1wZ9?4 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_043/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_043/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..056a4bd6822b913a1b2f70779251e615767b1334 GIT binary patch literal 1536 zcmV+b2LJgViwFo&%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=An>cr{X>Enn|lnEXn6$_sCV^l^d^kqcD zLf<|;-NmieR-qStEC~v!DD<3L=&J!|5$)T!3kmN7tg>yj*5DE;jv|@>uK5Tj65iKMFF+uH;sR2+(TsUYng3NC1F1vzV_}84Hqu9{{05Zo&lu%Q(!_ ztjzoV>2OVkMJ5r?2t%UG-ia8W>35rOh!f96MI|tl{j2M+M36UA#IYgU# z2$KecWQejXS8|f?TEYXIAnP!QNiY~gyOm;#0pFJ7?0n9 zRzD$zR0M|z04CTUkFMETn&m`LJQ#$LY>>PHx=F<|#2HjZNQJE31lgHUK}60bqqlNt zRxQDb0{RTAcq*xTqp3L?Fn-9;kO*m(d{W;-L1EcpFANF8ESRF&%?u0JOu$ZHlPTJy z5Vtd)BuFM^#ll=*OCvqk0m2*&BOfw9LWh__hM%-shDB!OCc#TDxn52=qh=whjk5p{ z{Dg#4@FdX26ikqpIbi`Xey$CymwB3+6~b9&*L~!1zU0UWkl*gBA%+dL(C)Op+JtQ& zAtV~_w?fydvt`^RU9&~0I(83*acxpw+|5~F6C9s1S1XprKkJ*L(Wj>CSw@11*|n$| zgL6a_KfPMKbSWf}bNXzt`@1f4{{T3-;TTStS~tF4cHp^RSv&0=r<&lH2~IgoQ?py0 z46_hR2mZ3qu>+Cdsl%mf_%O0M;FK8~o*h`5Fhanjw(|&Pxt6ej9M)m9J_51f)BxCn z*C$PrNwfS$K>ERhAD%onvmdnD2u>}gq^snx=9a{sq*Hw~8t_T7N3|EK);JTq`r6;G zaVCkXLC`*?%)ApWWv$n9pHEHc%!s!$3*OEcZ|9Vc#E z+Ut`qUZ0GCkH`rgde&;)f?DrwIPVS_SL?lo19MGC2cV52IuNq=PRRE8Av@=X?939f zbAHI~`60WrgzTOl(mOw-_dh}!e$2)O}+^%$Wsgi z1^u35%*xX*t#Nzj?2%Hq8YpX=G(*{HwYR!n6C@}?N`Tsv zBZY?$D7a0x>voFV*K4%TxFCoe1thaV>aD(33VnN9lSQwn$59*;eZ7+0<9@yHth&Kr zy-?~HS?uX6#tt-A{BjSH(krOX)#&Q*8#GIlwz+4TrBj>g{zXzf?|#@sRSn^mh@gng zv)9Ze5YxhFSQ}U#vjFBZa~pfBm(7^uxd7?8rv6v*KhR#+{aSX_lqar{{5$U{?dzx*(43t zWqZW}xoqUU)7@@wdE36{1-QGl)owlP_XhpWnLmN1U#n<5Tl m0{^49|E3_210y5^v(Z%w@|w52ExudLefM82Vzs^M4*&p&!s3nq literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_043/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_043/create_stimuli/_report/report.rst new file mode 100644 index 00000000..78d1b355 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_043/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a007 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 043 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 043 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.013179 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_043/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_043/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_043/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e910b9f062e59ec42b4c265f4e157cdf3b4010a1 GIT binary patch literal 2853 zcmV+=3)=J_iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq!tQ5IDtrbUY8m|rG9TaKi`fWVT3gs)%$l2YPM z``8ZNf=*ug7uvtnnf`@7ccyni3cHl7#HkXEJv_U6_ujJ?7mKsNpBDf2&yN?9zvvUk z^iDm*nNEQGzNRD0^)!q)9D1JX2XS<_c0STUIJAQJ+j#BI@ymEMT2@EM$ENGV)rSi+ zceheMakO&Tbr_hI8Ju!sU-LYe97oH0p`!=H$+vN|r3JQy&{~ zbifZ?8}Y{$>I1tT?`XbX{z0Ob21U)OSqP^IcsHhQ1pPhU%0Fui~(GjPyV? z4OPfXyzV0{Kq`iqp=AOYBlNX|O!bSu{`WigKmYi5w1gZ(A)KOLi-IU+b7D4^SA?yi zv{B6EIYHQZAZ*0MY-IW{lW@HuKd#j4adeCCnGO&696}!DiY(V!O|?;Kma3Ib9DQNA zx@PgAV@`?>`M~yguC`mrk~W_c^P9Q#1SaFJ8V3Knt$M4YR5}g7fgd8>wOl`r-g;b< zmEBfT>9l~wZFAtbJ~BcN@_l!|TvZ#DW>;-@Dtop4IJya=Hp;^4$t=0{WhIUlbAlj{ zo|ddMOAYAxr5E(Ff+R{XkmF3>#2VL!Q1`0cimdF_aFT@(aW^+eUi8HOE?QfL)>FWl^1Q8yEN8LEzNYc zQcjk;a;0-ADT}XiajPz?NnOhE{=aT6EckdwC>rLDklU8>MaxM*p=b|x1fl4eJ9%MS zl8V?(`ZtQkIp`VFp=}{o)EVsh3C4Ph+v#F#i9!! zPXG=Q%X|?{lIddcGcM5l1m_4IoTXUvbp{_(8;#mnLyh9IJcEY}wy9BI(aFJt!DlYT zo3#JT^e9e|K_Nrf@)^uR>Y9mo2DzZonMUtSWH7av$09SC@E7-55k9hv=EX~J5(0fP~3*zAZs zH#A`8_iQi4UeBg@z+jK!V4$UV!q`t(8^%9i+VC7o0*~hK8Rg0tdHRI*yCaI(wau+s zWQ~UtCi-nIQr;u&`@Hl5p220cT$9`N5{QIbGbxY-`F4jYfVK>B@sq;?c>a?I zo_%=q`5*fD^Q413OrawK3MJvJ5j3-FL>7<@QK#p73ABd1Ii48dPWW} z6~s+l6m#lU|AD6Fb!}7Ca$BNWcu>e~B2C&bM3BcfLEM#V9ilAev|XZ(YR%m^`tY(k zG9BFt4UkuFH(Fn+)ka%wmlV*4+l;C0o|%@V@tze9Ob7D=+snd#av~UtFpf`gfb1*` z1)60ckYn#p7b#biZky)q7ez?WyR3}ct(RoDY>Py2!Ov7>zcT^7WoN~W!c1x}*TKBi zCRzIMn{QHqX(5csfrP`u%x{xpj$BuE>qOmt^lEh*=oXQ;i$rM6iL75;yeO52959{;7_B zkEuyGBeWWAn00rREygt{m3y$DMz^kj60cXDc8TjnrPBpJAHs-QZnEn#@oFs+WM zmub%w!-)X0TdnMN%cZAK0eWa?+*iOZxiR+t{>H+>_iQ4h)QT6XZ^m?5hd3_ut^~CNl7kYJF(}#1H-~s`hwo`y#5lp+H4=x`Zye=J3?~*%4eo||z)q3kusU8nc zqYuiDx^lV~5nL*l;T#7w_et_bz|(@^&ZQG!atkjuN;SCuKS(MKd#-Eowq{z)aqbR8 zoF3Pwht=ijty=vOZc!EPyC1kSq;^)N)9*z>L`w6N0N9&o(L&Vkn zqqPjoB_T6F?L1-zLLOZTnY%iqcy&neIw8fYLrPbNl&%v}x;kY3>X7;WBP6Mh>s15s z@Do)7arL^Sf1+ym(IKy24L>^M^{e3rL(WxT;Qr7yM!qcJ-zUbo^2IHS>{N-r^FOj} z-9HTOuVyj+gr=_eni(KN zhF@cE}i71ZaA0w-}|3?l0`$WD03XpWAE=;HndFYFZLxf}oh DGA^Ei literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_044/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_044/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fd4bfaa7d5147922da51265a1ad739fb77e87631 GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zYEe+UdG#dhWs#6=rkW-HNYcH?f)9{md>x<2hp=6&LON zx&`O9YTAB6+0b2mZnCP=R#Km*L9yFPrfLK)4kW+*yN%__=h?GXkQK8S&XPTb7yO|m z;FW-Z>X%qiYaG!A6fxX@;0oNHh$qnlmE>+dzo|NIofohM5yQn^o)}&axjtsa$%YwN zz6Lg3C$v)>PY67uPjAL>Qa4Qu=euuXcsv-WEq~{V3d~$xU*F$0IQG>ajJ{!x_W=L^ DTdP9X}&goF;rad=6Ufbs6;8NU5*{@@q? z#_zjzB54lZZP8Q;QfS4zYY{F$Q_c9LcON{N3y9@fm19n71K!;rBJu9d;%0|N$B}oN zF*QIEp}kw{cz25_nTl~`Z6i}-1XC~W%#@y_nVOLdrjQ}DXJ=2p^=`YgA~RPu?+R%_ zr9*hk7y?qV!o0&Yppa-NP!EEzx(w!+riLeFUetbn{BLtzNp)d} zDnOEXS}+yc950a^ELRxEEh};`mga?b56@MM9!X(1BqRt_iPqMR@zMmKAVL;x2m;J#ypZlz zu?*=X7(5iBq?lx{y?bD+Du|L88Eq`7&MlE$k!sMTTuSekCS)z6Rv`L)B2-%5j3PD>2;z6OZjF>EBEGaduXyn%V zNSKRh8l&eIWJU#g_N*+2+!2FVIMgR}_&)9_;nk|E>Q zddPZH=6T2vEs84dbB*gYN8TX$tGb#}EU1lMKRO*^85lH47WL-cUei$)Tc#6ARM^YT zOb6A$<;|z1WR-)9-g2v9DgWNxn@gXCtrrEb<+0moBO}Hl2meYSZDa2CnL_X~Ic#e% zWoAu??P1%L@j24+upMX>whlgRweb;osK_7=tq7S}?KY=BZ|~vPCqKQ}>(rduZv+SP zQ_ZDLF#N+cEx)R77nm5kzxSn*uy@eHI5yY4`{o*LU}dwr+_XS*GJN^6->KN#w7l&V zJl?&yj`o1H+g$4=$k8bzOYJ1|?(Wh=7tuFvVv~pl1I+8(Tkk%*wn5}7HWr$76B9+f z(a``E-zUUsB)gdtoDd}NuyfSu`!aUBVl0&g0v8O5ibwC+Ew&ux>jvhyDLD=uri)$%MXYt@z0 zFR$bDf6d4)X`+dfl3+NyD^qq08;TBfT-h|2lHpYuCel0C3NoWgjpcXdwy^2wssZ6* zcctCb4F!F_d&LfVf4dG{qXb<~-FN@XmC%t*L#1lknoiZ0dHU8Hw_VQ?LiN~$zVZkQ ziOd9!wg94xb75`hU+>%oPQ09qWB=6`fBzAlKiwvgmB|o^RyD-1A%zCo9*roA*y-pv zN}~SpNjik%{&B>P;3Pd^r>8^gan*U8l1=_%x F003hob5{TW literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_044/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_044/afni_proc/_report/report.rst new file mode 100644 index 00000000..3a7756c2 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_044/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a050 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 044 + diff --git a/Afni_proc_through_nipype/_subject_id_044/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_044/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7232492185cd8dbeca24bd734e9b930cc364e82e GIT binary patch literal 2888 zcmV-O3%B$iiwFpT%z9-4|8iw>b!>EBVPj0KAB@s3ldG-Tij?r`5mz<&%}*@sg*mRw^@n~hP?q;SZ zj_zGl9R{Xl2B-Yg*E|n8$I<#>=;#4a@_ihw`Joe-Hj2k9(e=mBFs7qj)2Bup9SLLC zM#5_g4Z*sB;Ap;wRo6p~>X{z0Ob211I&@6c^IcsH#=aYl#%gMbpyF`w8tH**8md?- z3EDys>@Y%KOYCTT`Oo{;DvkU9iq?>0D8!uTlY&?%=JJJHzNCn|m14Of=K0;-{BE%n z6S0ZuLr-Gnb@@rX*^Hx`!oYL{2;~?;DA#3K>a^8XwOwu0dvWxofCE27x@)<99KHKQl9hu_Tj_Pcid*K$ zaeZWj9)$YNajl`Y>g~ST?bQ#Z<2bqjtv1Sm_oSCBeN~U6)x0Q*q^2V)?P?2Ze&Gd! zoLDRrp&`$kzKJz{2t(a%^y{*6D9KOMPG9Nvl{mWo3cVEVIJzxEWwoz7QRU9T(>VH- z05dCu82LhZN8By%2q);&H=U7yNr2W4<>qtH1Azu1Ur3`f#8whS_)bkCcI&v+sY!=Y zy(fc#k4$^t9E8NNT3vpsbh_$1&R|F47&ut3NlFI-eml`iv^kpN#?iIz^I9Cezno2A zNVC&OonEJvACkB&rf@zK9pWzAs=Vkz-?gcBYH1Fn>-A?!Q+f;`Ox-dE<&yACkSp>< zQh?6#3t6eRYHIzsexP~^G2fJ` zox?&LeL!cX2cXld)2Uf+)LLq@+HOFuz^duXd|x@tJ%ovW(jksth{<|iuJ}z0@>f`VVX`!`{HA zc*J0j;$Wm@c*e-jSQ$n?U|R4TY6PAv;WKJ0Bjo8bTJKIMW_?@oy1)pXP&`G9tx%v& zyNsi@SE9JY4#yNG?jXb81Q~QfW;B~(4O9Ppn}HLmW@zbDequ89ET%d~Rt60UXF45e zHZ?MQ%2=i|-XeR*L}9{U8gxz5=i4OUFoQ#jskciS#iqexlNL@GA+N|_s>mIUGVD|F zsWxFmXua!&I4fXpmf;!phKs@kQ+m zm*K#s*zit9Im5)kat%8`s1KJVNQHx@OJ%kLY+7tH6qjs-GS((&UY=8fgMP19Zz~Kn zXta}~^hQsG(;v9X-E*uJ2+6xgQcvkun`*s%6i1()6YvqRQX@=>F~}-)^$1u`!fjS} zL=pJGo#)jTa0b`Znk09dRUipB=TsmE^zAlf09_gA;%Bd3!ud}QJp0wxUwl5qUnCXe zFog;Z7)oNZN(iOY2D9XYUcC;ZeJQy9NJzMjpdjBi9bjfy_Yrc0V!5!R7YccGclc0K zOS-nBYWdxQT7Fp0?;x$XZ4|a43PA2^Qjai;C2p6nBdL85M;~8gN2a4&p#k*jy;kQd zwbAOT-KqloaE}qS-80j&G{LjNk?CMzWP3UICzpY70ow5?4v?LLra-eS1a$1f)JeIn z^t&`}KdV51K459wL9;5uw5<}t1)r28s9sfiebDnUw5ZKawWhYELq!5stJK>hq7ck?#Q6=R*KaEl zc$MVD-SfnjP;-*7zdJYV%U9u}S7UDD5E-toamAfY?$z_Jf6XOXl&JdPLKY=AgU9`b z)IRLg)PAoCX8d*>1Rkyk0#Fr_Hbd9ohlx%Yjob}+lJB5)?P(1z59Fq?N)*GABF5LM zN>xp(opWoJPv;enH6IDET?d|aBA^+$MdP%#B22Wz!Z$V3>`1kwH7SN00YtY^Kj_!0 z&maTz(9rmAz`A5%9RK5;m6f+_A|%x+=dy2ZX_|*WS>sP<)1~3Rq=jl?cbIdvx~}Qt zr71XP0M5!8z?TfBy`c`K4=!F8E~t0Nijkj6UA58dJgzq5@oDr??Qvhu_9B9-wHn;x zAm=_yUIaWX81G-W5hhD`wN;g1{eP5X8unb*5^T-1nCska7%{!Br-of4d3Ym1kzHhFA;TgX7uPvYbMtgfsmiz2sS zLp(Sb894z5DPwV#hJ($@Esi@hEyUe>TWHfPOk-Q*^LYWA0m^xxR~sQL%pb7mQyO_% zLW1u4i1$wKZE?hTuDJVfi!&V#QUeC%xcPG$x6ff@4S5yHYNldi-nyBH(!bxoWJzuyc!ik?(`Oi!Qor+pw5*EkGNl;}ID$86dnr z|DK5R5OE(&HqntISnjPktS!d66cwjD1KW2eq=Wb zVyT=aR%XwJXBuRp@MgAN0{=9%OuS?=ek41@G%VRz7j1EI5_hQDNX$ywNR0|KVma5Z zm?O8IqSJw^`9|`#?}uJ+3;1HTv8iMU#nH2>!=aguJhHwxcgO{>Zn+CxIak+1A2wZX zIwtNz>N~KWxNNm@izj|Q{%af#q8mxR@1O1-%7XLVk3> zDs1Txko5U}i!-!9BUQ=f%5kPmXcR{yoMvn)z0chPl>5VX_jqy&X~D+4VRIq1m=-ed z%PWrjb=up5ts~gDS92Y7Zxe#JHt!xst*iV}K`RAX86eG8%ST5AerWnQu+Rj-W$9hU zo;Z@PqMg_(%)0^K_00(~sCJe7`XSIEfMKr9-GtLpES1QQB6Dxa#p|jAk_&TkOEfT$ mft_MW0IskG>p7Y9c61BEJwcA<=x_vw1O9)dl`E8v8UO&5G?4rN literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_0xe3f0a878664684a99c6ad6ba1be4cca3.json b/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_0xe3f0a878664684a99c6ad6ba1be4cca3.json new file mode 100644 index 00000000..bbf13ecd --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_0xe3f0a878664684a99c6ad6ba1be4cca3.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "044" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6744ce7e8cc0c281907bb158ec788adb7cc55136 GIT binary patch literal 589 zcmV-T0*ZhpS_ z_50#ke|DYSzAhS?Ny2CsH)AV(6VIpNO7 zS3sRNhinke!Jz=?011(@(^Bv(V$nh~mVSiSCZ@*?F8 z4Z%!Rd5V&!nb_DWY7Y`Fu$0(zyYuy%`1^Y*k@zNf0s-MD@nYoTP2a9Z)D;d9etxyePcu4 z*u*zJ`o^dFLPK9@;tP+y@ZY{ejgIVv=gRStqYB%E=J@-JBf7+P;6jDUSlLum9G|_1 zj&r+%SF&soB&yNE+V0+NcSrGII8}$F&zkg7lf(rNL%P)@ae%7TNTAdPB2dWW0Wus% zM&roH1R0GZ<8fqcf{e$Ja2yH$1F7f3Y#MZjGfjhTb*l84rs2s*^J#c8(tH{oMc$b} z$sSu{>TeZ`cYSg=zrV8drt13*N3X5PwVb$MKUtTk6xanTwJ$N>|GGO(rwa7R=M<

by+bOkaPIUr9b|;cELXS3r4e}jJO%iNJ1HL2^*Lf;~|lSzO)PP;`gHQ zYjIrE^&(<8C565k2!a(sQqeR|XrWh8Oo_lEh>r^W+2e>&lnEXn6$_pZVpK*c^hHF& zLfbu*$~O11^S9!VgeFMkE1{Pj`2I zEc9BgXd+K_UZYGA5#fNGwg#6-aTL)6a4kkSk?_7^dI16n6c>=n)n?37(%er-#D($! zq%n~671%Dfd)+Os)dJ|NrdMzUNdb7T$n^?2Bmn^8%woP$Wh_VregK3Lxd|5tEaNaw zvoi0yC&M)v7MVmmBMglf2o_~6hDj(TD&|nk6(}N+3a442Z|!p*GGbK5Bt&L_=MZh- zK1>=Ck|D~nT*+y^>j@8Vf~>K5(cp@J{}BUWwIoP)qs!h z0T2e?0GMEZGP-VSX_gZ~@n8@}vSIQH=q44<5NA*sAr-QAQ)H(`1ra%$j^4`25Q!qhZ=7a^n_=PsGUgl|PRtRUAUH7ra#gZe(Kz_TgMi@5KQoGZ7*n@2# zAtajYw?fydvt`mHU9&~0I&u$$acxpw-pN^D6P%nfpH?i5f7aK>qfbrOvy22&v&&I6 z2Iq(cDfivUb|rPBpNng)vG-f@x@FTO=>Vu=b z+Uw&lUms6^kI4xh`qpa0g4*bBI`0k{R~!9?19MGC2cV53IuNq|PRRDzAv?93Cg zb9Tt?*&)00gzTOj(mOk(_dh}!e$2-Ph1%G3N@ndCp|a`3a9$EowobC?ya256#{`gp zu2S{dHfID5S&%`MM^MQv&jVpIhEwQo&LQiY#=Hq)4U{!bnxSm9+7G&36C@}?N`Tsv zV}*whD7c>6bvs4w>vcL{To6PK1Cm)G^;Talg}%M5$)aD><0y`azEVlwoVbw6yPs)le&L{P-$ z>1*Z+h-qOotPL!WSOD{xxsAQmt7c5{T!8f4)hi&lg%#h>Sf7#FrI?1)ubm18CAeHx zt#Se?cdfkXAS?#bv~R;+K?f8rUdAlv6v*KhR_+{aQh@QWwk{{5$U{?f~c*(43t zReQw(xoqUUL%LB5Z#~%R^}ODehaWx+dN}O)xa|`!2yhn^xV48nTvcYXgmFyY6mb|6 l_#efCHwA$l7$G5;jjvLW*P`WZ@g2#1_g^-7kQnL@007Ay$P)kn literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_report/report.rst new file mode 100644 index 00000000..47d74938 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_044/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a050 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 044 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 044 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012737 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_044/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_044/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_044/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e5172b12bd212066e3f9ec085433fca32c75b7e9 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}@8`+YbIChdrCuuSnj?&grDgq=3Q5IDtrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z``8ZNf=*xh8~TSjo&J^H1u5)OvJ$6CH1_c9?%jLOUR*5B0)Jlo`@cS2NdBVF9Me1X z5NA38^81>OFxS&C;&AABt{=qFJ?VU;gK%gC@%QoCU*cEsYP775kdIB*iEED*X6|mM ze&T55vgJoL538<+9Mv;DWSI`ae7WzKs^`198Vr3m91PVd6JEt(?-=QUY8q-z z6nWi8T7XmxF+bYT6SI-&!%V{Uru?K@ugB4CzGpf-qDsfwQf~b_9Xd<+UhFpt`bK#579x+j-$IWbe6ly z6IE{QK8>SKdAPiMh>_11H*;IXP5uO(`ld7BF-g$Uo?L$cejw3c4>5`H)FOT0Onq+Nq^EP_s9mDRt>Fq;R?{ zvsV=PZ-Q)rE06|EmS4(BwNX*4`_)~wEdi&Sd0|5+lEsqzwK|gWGLF_S<&U$&0Pd~q z{w$Uj21Bkcm0Np49KA=cOb0-#Q>B+?xmIbY^>VWYwF0+JSLV9PUiKke_$Mv0@Jl&a z?#k89rKBvr&c*GztR{6S$NT@iwXophom|N^Sg1Qbj5a3_~5dFGCo+b$GJ z*iHI3O2#?p8PlQdT)w0;*!2^fC)l34-P{)QB^>U|z+k74+ZGEYT_Yiaanck@E&!1L z93+-v2~CpeLg@=G(EJ4F2_BrKSo3uTA5$BR+E_!4;xm!KLk8Q_D6r_{V8Y-tm*P#@ ze`b0Vr^uj?A#C{!W+8RWL_C9B(CAE~cP22H+RS5tnM`@1UW$FsPVq65;xU5}gE51B z25Zbx;7LOHyL4H)XVM0fJtiT#MyZWWN)3-GHW-YsLBo#B{;V`%E#82^h&F6?#GV@( zF!Ou1mtwDHQ#@d>M{zLFQaoYoC#((QA24lr4kdv{bNGyMWsE$1Li^nj#q8SVRxL0_ zClrqn!xb8I(Jr%4+Y>1k*>Fr_z_CN1Uv8cR<88L=jQ-qxcDK@;5LDn#FFyF%l2=)HF1?h0mc&^P(fK7`XhUOecXk%@JX6>0Y z*zI;Y)uzHogIY6rl-}y7@bm|*a{q#K1wr!mbE%_r%XPKdd>%)iTrltvXjmhhs$;NK zs_Ju4J&Cqi+|1=bAKZIUehJUuidvE6cD)QD;r2`lWI?{&r3#=egIxUV@Bp6w+jKygVNlP=;R{7! zQx}B1y48QEsiLlJs#<T1#;DVp2%6@kOddtoV8^xK_Uao_At4*@> z@ps>)0@FemlLHBdhne3c#~it??AD38{p9uPHqb31Zx@NsniE;SzIaipo#${6fSi`{ zT>c?BdoZhjCY(O%&q4R!fEB$N(~j{bhl14|5Qi6&(tKG z5n7El%(}PA7ULR}%6(W+qgz)%iPx*oy2SOO(&>Vqk6}cux5^c@DeWl|s9L4kBpHQd z-pI{PAf0YgkziFxP29gIY>6}{1^eJa*n`9H(cv(&x`zzc*D{68wanp*qu*wdDoR|v zcd3e!lfmO|O=|A7Dr&b=2O7U027!l5JP%TZluh3?xPIajqLBk4N9rBiE-St+a2Zs)>1%T2E<9%??~VY?1I?Sw}Ya+Jo?-V#635{6d|)9RRdnf6RE zoCqMhwd!uSQho*%pofOWeFN;08)N^UHx?FtU=tywR=QAqGp5rz{KW=;IZm%l|7%95 zCw7Oq(5vg3KAgJ*7YN|AodW!tVA>UZaQWcib?Jb5kK8fxQ>m@i>aEA+dOSRhKB_$K z%IRK2aJf=}a~#y%XUQ7@PYZ@SmrjJqExgz$OK|^xlvEn_T-V}l&9s=~++Bz`J+4m= ztIN|{we~gKqAJ{XKXSo%(>o1@@Kg$;<)MoMMAMc+nFDw|SpP7HVr1nhApP_?;71zNiSb?Ae&2-4GYbi^sl6ychDh3oJYQoh2Q@-1AG zZ{a$83n|~ioAMQ}$ydA%Uoqt?{xIM3Ib>u?xB?vaeAsYSO~*i!9ba<>Xf?MkLMYH= zq3z(buPCmqu^!0d;UISejt*A7ef7n+uTtXY#R(pc5~~LZsRu{vnae}O)q|t849q1V zGeGS;Vg^DUT?(1MI;3!QNZ~pmg{wmrt`1qaPRPR5A;qghivLGQQXki=2IAposs`ff zO-cVu)$o%;UcVZCa>(mf!;glXtH8khv2BceS;BuvjPsR?TNc@=5`X7^WZQah7(7_d zOeasdG5$FTc)sZbt1A`PL9oe!PMLWGxsww`@>Od_hn$?> z;PV+V=gAw7KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4znXT46l{pv4hjr?VW6kJ~W1ac-a$`HvIW~jmh316rC cl;b%ju<{EL1mWj6@!Q6`1riawtM~{20A*bw1poj5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_045/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_045/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..07925429199c63a039729e23b4a036588a690df4 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~31jl3vgb!yW|p zA@-KavaP!9hGHlXq$sv!5ADOS)F5byvKULGN>WbJBEa@itN`DpJ#_zQzhZx7hm?Ft zimd5eA&5ls@SN`)exyJCdg0H1uAZ}x{*uw`Fe7e8Gm=n7T*3zC#dt_$p)c&fyZEDM z{8k(lb-jofPD!D!1cG2ikW@6y6I$q16jLIw2;##+fBraP6lH=3NX3HZgBX=j3Vj~Y zu+TS-Pj|6*zgy_#K9&T9R1|u_E%e2Jvxp9C+@*vM09M(!vd_gZO87oX$cQ8W^6Ad@ zPlaB~6;0%c&a0FuA|f1+lh)u8DUKqV0ItOdClcP5O)o$of#L#ExzdbzN}78KiMUXG z0BH;)eFe75t#0Rm?|B}iZ+Zn+kQ9LTi(Ide0}=or&MfB3RmOs3;0Hh`k(+RVz%mZ= zG%NGIb39y=VUbD1Gs4h#fnZVAVwi+dqGArkT!A7Isc@PV`sN<*Lq?3sn1sj-@EoEo z+=EF&LNY{ImMb~UcRk?&PLOpN#3UF_pj}U~$`Y;;+DCmH3<-l+=N}ISurgVa!)n0C z4*&=Q?%RT-d_<68&7^#k%mn(Pvd9@D0g)1mLj>4LG*!r33OZvfLIjBpQHT|m@G%*` z39Ugw45XNLn9)jS@LOp_XUMzhrKW&46|T{YS%I>U^4+bfla1p z(?ZnLK_HkFpBz+`2pI;6f*p*Lyvzv;fbk10V7<)K)T|KBGP~|$kBcQoj)44jUyU$qsHIlhd)S3- zAR#20?6*SKsh|CUf#}GU=y62G8ZeB#=q!msdyEsoABd z8iR906hFUOK6fr8k#qcPvHQC&^Zp)ia?>%KGPQ1ev+BTer?PfhTTV5>F%z6}n5Jg8 zIvHjmmJa-7p<@Rk!BdAz*YII%wZ|zlHay$2HerN-NiF9Q%yKPZ139Y0XnhP~)2RWl zyRVO$CX;6QjezvSyFWg8Zf4*0S_n=prlhOnsOFZ$o~BcMG#cGr`+AD_(z2y#73R z{Rv+GzwwUen2{3j7GT^q=T)7ukQ_V`m<>qX+w>t+z>_>>a?;oJ8;w~HF8s*sdOdKo zTYG)<)$5}P@G&{TL(f`mSWp|iP3Qd~<7%VVaA2+p=>W8GLL;9zO^#4al!;kscU_5*xHW*iD1^tQG@X;aXXTwK_oSzLJ40()! zprAi+j9Gd5wKZ;SojkJ4NoD7|u%~%GPlyxHCgnEdK|?u(U&X9J?Ym=&#D_7 z)=Q<1k;RU_VC+C+#V>atDZPdUT#c^|zeBS`X`4HySvs|;?w%#p)9!~&RMik}i3p0= zJbBGr0WmF%hP8p^Aq!wWGq#mkuG{gf(Y)b(4v1oyEN4f@5C@BV&gp1<@mVm3*G zb=6+6KrS13?{qu&{NSPAe-PmahaPT+9>HF#)9QK;{CnMppunv?+~KM+nG{3Kyb>JI<_5|!q+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_045/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_045/create_stimuli/_report/report.rst new file mode 100644 index 00000000..9ca54cd7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_045/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a076 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 045 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 045 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012441 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_045/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_045/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_045/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..71e154789300596a370df4969c4afa4f7ccf8f91 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=3Q5IDtrbUWI%|8>MEl1K|KwwEi!e6ieNhxus zz03^mg5Ko`deL|2lk`=37NoFC$%>sS(b&Upch8=`J=pyg`1|5N|NZGg@)v#PnBJ*} zIMWG`-`8}6xt@j*heOYE{UDC+O6MaTghMNce~8!q5x87!OMd7Crj6p^LUiL13=FBYxAn0RM+f}S zwGn@8p+0!m;~mZSuYBxe zjyWkkwOl`r-gzv^%5JNv zbXwrWZFAtbJ~BcN@_l!|Qd1k%W>;-@s(aFY9NmOb8)YGSGE0`euEx)n z8_@GxFX&}+1)%@~dCv4rtZ{uXb+6W~%F3Q3KUP~^rQKEH=*A&B$k}mpM~2RFS9z?; zt=%Va^eGR^%ZC{Gd~q|kRovuH(5Y`a10ItEE$zwm=b#4?4MILY%}yU%NfP0AY!b2C z`;Asb+LNjs8613Q+B;@1B!N|`@)M=iR%dwzKa#*8z-mQOT9EKNiC&`3(Hu99-flmy z#L;{6B?XSuTeWG>%e3=DlDG3EoSC8~?y;lFi#E(%8f&MP=0MHfc&gN;N07p4SZ1#% z^4|p60#_gnm@L1Lm1?7+R`;vBYFh%IZsdgxp-6%y`D=9~+^WiR^x7XERI1b!(e%U!wJ zxs;T}SE;yFm(`>$<#_+UHy0Lsypt;#=1wlZT@Xu_lYnB$9`59FCC}UubK8YN3A;)E zM#(q_J!3kwoy(VW2D^TO^90*dwVT^wzJ$Y_85ryoa@%5|q-(@PFix66$ps)1fP+L* zETKsN%5G$h{2e_K7%zT z6gWw!|1J$n_e|Pgvd1Ju*Qje_le&h-6dMdi*q~-dW`9`@#Hv=mPm`3Wn-=m$(2o9cJTaG1ir#q`^vMzLwI*rbgUM#w8Lm@0Ay zgB1Hze5{Qa5!&y1Ax<0Eo1}Pxz5aRQZ?N-jZ{q)rH;$|)f{NV2M@(VbFD{4iO+x0S#gj+KzkOlg7hcbY+40Q3c!vi?~$$@7d9)0yb$A8&w&?&f!@!=A!xxIerY;D1 zb*ukCQ$=0dRJHt;pcWq#^P5O3Y#71@WC6%sMd}b{F~{u^b|f`-Q&! zz1wJgt=1ZCwOv+#A8s?EwtHq;md1NlI4~W|4{R?B|H+MDD8M*A#R0OjFcfH(g@BHI zI1N&+D&02C+iyycp!ZoCw_7jEuxyKjaKX=%WxqE8zGY{HjpB@IFV{i5)h1c`_`B~? zf@vX)$%TZ&!^|I(YmQu3cI$-Qe)4K|8|W6Hw~K^m&5^9%U0jrE=NViCAg84~mwy23 zyu?HSO}Ks3p8@ZG3nF@tmVnfhfSfN+D?kJi`0i6hl^QD0>295H{wa_CfT>BiBeWWA zn00rREygt{m3t6Sqgz*iiPx)7yF~S((&>Vpk6}cux5^c@DeWl|uv(?sBpHQdzLlHZ zKsw!~B0*G1P29UkYzZ|d1$+O3*@MII;o&f|x`zzc*D{68wanr3qd#PlDoRwnf2oR+ zo57=QO=|A7Dr&b=2RHsS3<3|Acpj(f6yPXTqEH_>3_ut)x_>F z7kYJF(}#0QaKQnbwo`y#VNAQC50(!uUY9PYcgYhYKatvMt=@W6uE)dE=%dP`uAJ^g z1eYrnxW_@weU`it@U&pKbLmEyJi?2OvINinM@gk&&vh-{)=Z1J&fNiv)9d>5vbsEd zRBK3(O02N@|hi&1)NGV zR2`32VRZG}iS^71IF|kPB~K#Zr&tX%e3EU{6f!%T%d2RFoB(qH9<6X>DYbxxGXraD z0Fk$|au}?vT`)dF2L~&zgHf;oMhBYdkYCHic;)DbQlfrdO3RjyfTy3&&9g~HtO^R2W6#oyCq&}`!4Mf8)R1HMc zn>zgqRm0CVdHrhm*(R@F4X-shSAl{1x^0YnS;Bu#g!7e)TNc@=5`E`?WZSxb7~Ega zOegQzBK%7_;Q6K#tgcjC2f-!_JY}X4=uS@DAYZj+?vR`F z8+<+^;yiidkzDf)3~X+*Ao4)=mfSE%SWoonRi6z#q?1czn*#ZkYx8~^}#8FzUA literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_046/afni_proc/_0x1d4c51e53416d8b82b13a96333580f82.json b/Afni_proc_through_nipype/_subject_id_046/afni_proc/_0x1d4c51e53416d8b82b13a96333580f82.json new file mode 100644 index 00000000..2d18d0f4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_046/afni_proc/_0x1d4c51e53416d8b82b13a96333580f82.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "046" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_046/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_046/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..07a480b5f736024af32151eb39e5719e4f0ec977 GIT binary patch literal 305 zcmV-10nYv(iwFpQ%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z>av33&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMICj+^`3BC`_W=L^ D5mcE6 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_046/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_046/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f7f2d6b4c85aa76c4472dc713cd88cde1e757d93 GIT binary patch literal 1294 zcmV+p1@ZbHiwFpQ%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasG-+;4nqJf*#KS7Q zBvP2&&2Dy65JHtuQAG(4MSTEOmS^V7+F6f1*q+^_C=$F>RPr0<0e%ec{40)UW-mlS zio~q6Gxo84zH`p!@BF;_JKKD(dfZ2n7ncP@1usBw2@%LqcuAFl@ox1D-~Km$_=~^t z2X2i>nuB+nG?SbZS|#3X5ynANov=&qK6pAa5X-bGM~u`Cyt_qs>fP>qXGA-lfp;4* zH9%6Xy<3UAyPYVR@loY%U8oU)sRz4LrN^02QzBpj0--%Wd-kn&+ok2gT${Yhr3IbQ z1g@{fBZ*Zc;{qYAWmFh^?}S-|0Etx^qu6aTl|%bnK&G^f5oB0k_#0fi(H-bO7tx4X8ax-di) zAjzyOSc+|in@A3pDa_-hKglQBs2b?fP9gq0~oiPgZ57YK+V?#CK(H31U1GEX0e zB}X4ND@rLL0b{7XB#5m>)3|(OagtG;5)5=qQfjHekGcIJjz$6kpMa(W0SX$=t$S52 zLpcd14~=Lk#^Q~44~$g>Q4%wwjV0B(1+r^a4Z4&I>;2M%stIa2qA#drOF=!JZ7t9E2SaxLj1SFNo64mY%RO1ywb|RZX(iVw$P$(gY5usvfscA(cw{nbx zxtL@zMt(u2lw*YNcRPVap>hl7^(m#>%9Z4y5Y5F|M+mWibP1k8+JuB@_^||;AmdlM z$a+)ed8iOAimL9j6W3~vTp{_Zdo`hWq1L;{ohJjl1_oV{`F-<@Pd~ z>Tq-jdE;3rlPbWuw%l%5%D#8^X4dCn>SY1RV%eRnu@PgDgMX!vwXk*vi9+x)J!)w% zrLZRC_NZmb_#A0@)C#l;Q-_~!weaD2xRJpeqzIW=%{Hq)Z|&pPCqG^7M>VGo8pGji zRkJAyj(@nJ=hyY_0t;gg_P@V+L*yz73l;6ubUNK( zua5`cC&X$byO|N35G3#*>P5%CjNKj|Nu`0nMFK^|qj&C3t#eh2GXAwcU>RfVoC$C{ zjq1#8Zs%!=eW+{fiz->vt=E(={>-h0)krp0o?&=yn~ap5Y3Q#wtnpUEvoNfWu7ZAb zlc4{rN480mP3)8e)7f6?vYRLnZ^W>l&1`klE=6dhd&5Dxa1 zWjbs2+yBxgUHHd$i!CF#88lefVR46KRM~bNw41> zq^I%eaop|ECxc$EcXHavPEkpBtM%9=oBGu(8M#(^+>et^Z#ay*gF!m%BwZN7u%A5{ z#{E<1$Nnw;m|!{nrws6)F^>P|Z2Z;(rc?r?c5 E03k|nhyVZp literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_046/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_046/afni_proc/_report/report.rst new file mode 100644 index 00000000..c2767b58 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_046/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a006 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 046 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 046 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.122185 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_046/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_046/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_046/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4adef68491373379e86651b2970302b31b39a920 GIT binary patch literal 2545 zcmVb!>EBVPhOXSdy@C3l<bp0Ult(Y45DNEO)#E%^hXXBOh>O<%lv)SIWrgoMdisQh; z;%gTV!MlOzqbMY15Mtj9oe;Z@kBL|x`i>b!fn~~l4S52Te0cbrc|zo z=u8p(u#*Voel)-RSM#r5-TL>B=^FNJgSwOcMwaAKp(q!MWkcGjm9}bIJAza!7q_b! zRhu{wjHGT})gLLEmZjIlf#Zvi$}yx+S9D$Nw9Qt%U2iJAEdACEEaZxb@62is#Mlc( zLETphv@I6pa9?04EmuLEA(a7KO* zVLJ&S)whlsO|zx6`)0SN9H>WGdJTF#T!855C|!N7Wa(;Ak|ZkW=tjHV0?DUgJSa#d zxda_W!HFD#gdt3IyV+NC<3QCPnVr7T?HgHo^(B5Gd0Bc>2VuQ$JTmpp{^KnDLWGqS z6M`eLQk8ZpRq+^~M21vMyG2o@(h0DfkA*uLp3^(@SC|^YRyM}kfrZ+pEk1e!}HYyj%c0c zJm_^M{DkK1YzY@ru_Z^;!JEX`l1ry9?)^!}y%30@MzwkjMg=0Zt47BscqIgqpT zBepU<0G*z~mS(-#Xqj5Q-Go|!UDMZvzHw04hJ}CBp@Cn@$$DQ`dY6*2`X&?CHQmhX zQqPY5b8TfMB70KJcJ`#=ZmC>z{Tx(k-gr-vYN4}NmUc^}8VPdwR?R*G1AE@JD-~-N zhl41`MT)(-+3Ie&SR={a0*v-b(r&p_vk;vkp5{%t762$yK;m4pT*I?`xLo^Mh*6Z| zBE_TAB}S3O;nz$DF&%e|7(Oj?c+6psDa9@u9M3p>8ZcaC@>3^dc!_KVIfvbd!#rfB zxfxF(7i@N}F*ubu%yiCUnH$Xf!hIALanuEq2x4kza^vpI5?&}MLEv6*I5dx=jt z&nzxl>FEN>hOB{O) z+u`x3U^^r}FX1Ohtl@bLD)902T$>*NA1%Hcn&*6kHbE1-XfLS2e!tgK+6G4rn(h23 zz1B0~^arkT`vPkPLh}Bh+B5of%~aZlS^D_}g$M&HwUaq923%(;$e;K*})U}nUMF!se#MXp-1Tr_uv+sG_isA{6( zj%-%8E5#~Cr7c_Df-C^JYp6ZSEY5MeoE@p{{Vct6nH@R4IJ8c>mo69lab>SapZ*s_@|eFu?+p>gv8h@Kv#@h7XuypWFDlh82v8G+plVn zppSSOx3AT8ShiJ4xZr2bvOk;w-|`CbR%Jo8*ELY@bZM6EeE{$W6P!Vc9jyXb0q867Z*k89l}Kba#|}2#cf#UH7*Kh!tFyl1m1rI zBKnY(fZA4poUhL-pbRANgC~ZmwoIVYeT{PdIgkFBt4X*cbXr{)b?Y8qjGIs@w;`Zb zUo(J-Ys!;8HN9%|`e5e{^q5+w-Z0zhfuRDcHIz2ZC?xZWw77xv`fWpnsPdY)eUaEw zYEBFG4;Q9=@iKYva=dZx0NX)?HcHjajh9bf{dOa-qTJL+m#Qeg89eMa)%HQBVfK3( zxbgdO9EYSPia=Fp*$e|)80I!%HhMP{XuX5kwZ{#(JkXoQDm4sSiaOt@8+CIo_Al&N zVZN?pj3O+;=Q>`i*^2TKD{yhZ|Gr`_%F-_sbwK+d~OLYI6#)| zB_MB@4827L%Lf;)OBd8zbjRqA)vnppIuGkwHaG>+{R%`h2T4pTib4Vc-3q1rwd{ zBp$=5l%(t9fW$tcVZ7yuV0>-7p00;b>|hK&JF@2Z$*fQjwgmc?B1yu~DpiHqcEzle z3yYtr6ORicSQSeaN^sDvg%O_Qk3V0%!{ZO+Il{IR(N~^X_P6v}go#HF(f5MkFz<|$ z$hQJGTiWS$I2oe&txr7L!uF0VNpPWFJA3JBCxi5wophKuJblf>|i_@|AB z8?Z31efk_ES{h4Z`deCRJ2*Uu>pUMM?V9!n?6Rt`H@Q(+It&! z0TurA!(D-95ykfw9h+xbi$MaN_{BTU{AxZrj2u6{cefGv`0nNn2y`(#OIz>q(#C`$ z6UG>MX65iu7KTnlVi!*^9QN;X{$#2CF4n29;$j$luOnxIZD!r1uXiGw0=|%Ii!foe zrE-Nn>Mf$B#Nk~hq=YYLIW~b}u9nIo)cRVG#QCD9U%c(XG{hD?LmMZsB^=9$kP~BD z2Pu2Qyjiz>$1IXq%X89BKQ_&nDw4COR1>z~)rwFONsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFBIZAp9IBe%p9=efIn^_y_<1Uy~f) literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_046/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_046/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1cf129c97c2fc89fcf0cdcd59943a2538a30208b GIT binary patch literal 1537 zcmV+c2LAaUiwFo&%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~2~NX?j6B40{mV zhuB*x%a^3-hGHlXq$sv!5ADOS)F5byvKULGN>WbJBEa@itN`DpJ#7DIzhZx7hm>q5 zF1)67g&-2i!}ERT@FRWr>y;2-3`h(lpYHGd zl>W482xlmmo zX$&NN1-6Tg?bc4)^E?RO^a`#ZC?Ma?GrdHPi4TN0vz%AUhy_W(50FqIGjP7ZG77RJ zE#kg+9 z^r4vID^axsgSiBGn*I{L}Y9{dNY$| z)ncqDuurjy&IEOLI5lH^#*Y{p5FyQykMnyZC@eedg#lrh`DdhdBgFzX6Q~o^WRf;c z#I2OaF_N)au^QIT1>F?iu6)5{5G)GS1~aTb6= zHzvUudJ<$~5+=yYj4&S*Ki2@&%PdLE3gI-h>pt{2UufhM#BcZ20KJi@q@&eQLU%rNkebT?@-G zI7dYO^Q*;6mjV(x=g$_qzpFCq9)cz}9iu6e>)JQV4m|ftYp1d6loK2?!6}AmVs@*O zVisWOz+W0Tb|4fyakzAi9)?zjoHAp>(?e?$gb0+>a2~-d*9z8`gDQ+xha@(g3J|;h z`m}B$sTbb}MBl&v)@cm znIx(Lpgl~PdBnpAI^gJ_ z^7{0v*QX=mLvezKj~u zjxk%Fer=5#yOT$jIjO9_;bV@ijTdTT({^jpKSCJ+JYg)viMcijWde?a5(< zhY(b7+iuHk=2=&-(;nl3Aad-J)D}{2^|hkVx3@K!ck*f!MiJ4gWywA2*9*_e8ywaP zMI9saeSO8)L5&r?+=rm_3hHq+ygK|2&4Q(E?we-e)P{O+kx-}I59_GRA>0xXB(Xku z&0Kd`@WY)3+1hCYt*!2sx8q|1;#sryaEB|?Y?d&J=$kwW nA_D)zsP`r(5CbD50JGs$3gVi#y3M~|&ARS?B)lJB>JI<_RQKx4 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_046/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_046/create_stimuli/_report/report.rst new file mode 100644 index 00000000..d7927803 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_046/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a006 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 046 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 046 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012248 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_046/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_046/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_046/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e1445f4acd57f84711115f7fc72accff2bb62680 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo&%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChdrCuuSnj?&grDgq=3Q4(DxrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`>&b7zo7s641IwGJ%W{`dUJ!_Vo`Ro&Edo3;&IlkYgx>Q}jC_Cls=IA)6PK+;*w3 zQOXy%?d^?RL5PXj$n;?*;d(=UT&>sR=oa5I9Uk&IggnYsS(aK&wNY-CYt>F1eQmkA zX7Qn8PD&5?!1j1f+O1|uo6ig4W_~?^$@r^=!T)Zn-s&jTP6Ke@he&rV*N>xj9!s*a z+iEJE7O=Q&4jk7YNOihs_jm7Puh>8n=oplEUcc)lBI8|akQAv<#ME_ zB`eKx1A0F4f?gI@T7ZE(XZj}AxITosSL;?~WlxeHtF5lm?kaI~;}9L>>^Qn3Lua|G zJXYn_?vptBjEBq1hZy;MaWl7F+~iNtsc$+19+Lzu?aB4$;0F>7Mm|5yP9IxI65)4j z60_U;jaEh4ld2sV2tG9J9kUmbg;lEZ6Q$KwXL$x5$--cP)rzFFAmMiszr>rPIc^-i z-F{w)qxa@Z3W(HOwdtalY3GL|Z|9eA7K(U771Dd)Y0x@Q+($;g@o< z+?A`HOG#OLm5W<-SxxFvj`#m_b78^9JGqi!?&R_h3S!A}5>PDJ!<}5N`IhZi`%%ymf z_Me#^#VIl`@#Hv=mPm`w45q_yP*MK&DM7`eR^e;cIG37Kd%#TusT_iYA_sGGi}Q~Qz0^s|`y z99StdD4ggt(qwF;_>^I$Gpj{*pUJ|A!8GZbrq8xXz+npe7SnHw8pWo;Vv{yb7$dL1 zVCu*n3{vb<^RYH!OlZIBg*a_sZ<68(_WI|IzrfD>U^`d(@{4l-vhpOwu4Pc{n}f9B zX?~D4d~}>*JoZu?*c2Py$slW(IGFEY1B7~i-hy;EXgt?uC%~q~4nuQ}BebzLLbLWv z8tisEooZ8Iq(QBjJW6kNRCxM>R=IaUx`H5i=b6+|y5+iBZ9a>mPcInw2sEq_PSr8k zDpmCvsGdaIENH)^fXR@-F-^x*@>)OOEI%hGty3J0cx`GM_a;XgSM3wU_H)-fEL9 zee(VHslc=l#^gZ4;bG%7FQ0-A98s6PYU{}!z1Jz4@%Qvz|mJgoo`MBuwm6;*1eAg8-^qWPyf`U9pW z;f&B~v|-lWRkj${pj7U`f*Rer0!qAIecC0i7nM#I{Col;%&3HWdk0mDI$&i^7&jb5gMPFN8ff3?Cj2Gpl>ZaD6RP*j&pTK0o?>CaI#t z)%%yKC^;EC>ei&@UaO*ZJ9VJ($6*k7xWw}yRY=+NU4!cXhFgk|uauRtI_-8Y+_T*Dy5gbcBObQvz|&56G$BW6Jnb#qXxz8JF1a!G|M}L!!fQ4WQfj3O)i+~0t;1h!@Ymz?%Jjct zgnD9km+4c-7jo_%DP zK6%wMiGPT0`UuN$z^%nA_8e)p0mE8(YD4K#d`ZPXMpJDba^XoQ>qa{(T$aO6^I0bR}v ztgQh=-ps!zM{Cc#(E%+hlAV^I67GQ?&X)?y-bOp7bkc)O04cDr0yTBXD$yBSND(BGBB5f z%mB6Xh#3fZbSY&1>X5?KA%*LN6s`_gxH@FvIw1>JhZL_4DgGZJNqtEsYuIR#B<>WZ(K0WxIhrC;)v yu&q~BF5XKb+W%VIKPc77@ z>f(ap&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oM-@ys27lofohH5yQnno)})HTpzOHWWx+B z-vAr06WS_{M+ENEr#E9bsppFr&iCKO@Gu#uEq~{V3d~$xUoURwICj+^<5?jW_W=L^ DF%_2V literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_047/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_047/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c0c5eb15a25435b9c1a369bca4875c607aed2027 GIT binary patch literal 1293 zcmV+o1@ihIiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T)95)cJ8$14r6X%1Zls+8p ziw*AHoqf5DTS^I(l+e^Iq~swb2<`6dNj|N#m9%$uN}zoS4d|`vL;J_{z5i85yL%rs z6b#*i+m%L|`OVC4W`17%oo&8XKkg&R%Zn1Cl9wR3gb3s)yrjy&c(;0rZ~vP=_{G2R z`)-X$T7Y+(G?$!|TBY7?5ynANow5t>K6pG65X-cxMvOEDyt_tt=H1Qt&4~7nPrTbm zr~#63?cGY`-St$-oR4a2>q3nXOtZK-ReGEYH6;QjAQ0Nq(P(g+xP%dJu%wRWO%oYFJhkW#jk9|2Ef^RF{UR z5+s?W1yixj@DeG&GKF#6w7dXgX;FH2?@T4=k>rL!MuI?9Xl>;oUK#_Ggv+wBX5sIy zP$?CpR+utK$8%_R3TjKCtl$YrXgUUowyr%MjW9E%s4yG&@eBb`#Qi`+p(a2ASLWg4 zuw>}N_CzHmq+kry7X-02Xj+r^Ep9TZGlGteNk%O-_%WB?!_`PY;1ke{AV5KrxpcRV zWk@H%;GqyDFXB7Z9Mg_0pMaz?U836Ul4>j=WGAvI1Z@$ByQLC>7!fj-Rhrf`aw|tj znDa@Vpy%ggN;!J?e!mx36f(Ck-e{@ZR-q&hiD(OF9U&wFvL$#1X%hmb;l~POii}_B zBkN676d^;jEbF|_G_Exqd4uGy>uN%=pw|0Gy^|r9fkBgGUT@y*wH;-?Wuj1`++IXe z9aIOGH=a~7tsR{Amg_A`*-LkOCVd*Vo|lj=j@`&x88H?)_*Vvb2XnWdDg-aH!;S`1 z32Q=Z4?Ctx&XAUeoj|Lwb@1s{2OnO9iVWh=ijbN0ZhQLk&K`b!^3$8WsNvLpD>#^) zYA;2>@DEqC{HnQKVq)z6-j_uu~5;?Ot06E zj|Zsu4k1<}+0BgLgdl;3(Q$O-tHkZ{kyIK8oTpIMJbLGDG<~ifQO3XW`z&XSoiPD! zr|mj(ncI1s;T-B4`>YNYb?Xf!j6Zd&;WUzsRj25l+a@DrXFc>+TsC;?4G0&z zOYNpsh0@d`3Z{8wN6{YQBIbQ?t0CPO5)>LG>=DKyZ|Fz(0MaheZ@ z592iM9mhvB>*u{JkNasncoceEeIBP|o4\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_047/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_047/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7b47a6a67c4aa87a197e04319ad43496a70c69a4 GIT binary patch literal 2540 zcmVb!>EBVPM}@ngp$*<>xf^Z+_0e75(knVqGF@+9zx z{K_RG@NOvkI0`8WLgJ&)35o0YgvyPP@1QUWEEG?oAQ?~4!V?+MWcZ3$F>-9ARBAFl zRRllmB*M8Lt?&NzUxco0_tOpH+a_}-{Y^DcXF8bzo{GS?|1cX-&Ff;z;ToiD{zA-ORqiD40FHRG5cNc;;J+DgNWEk z2&ukt)NG-)+8Ll;Up>%{vh*_adZYl+vr&fjOwH2uqM|5F(lyLZqYaWz!+2Ow%B3=N z6eTBeD3(Sr)y>vGHOvFec!;_Kvo|oa^wJCRT=BB>x&gw*zr3^yUd!8{UA%%W|>4#^l2^`V8twqqA zT=)sg+vyT6r{YuG6no95Js7(&!^bZ6pzEYRlYQvt!5kPjZO<{1$NEAkOt;K0m^v&VV4DdAt##yL+xKk%KDp3T+t1b*QJpi z{pa%9T15Ahy6x;K#ocnH?)o{X*1gG|qSQlYucGXh%XJ#$^1F5W6b$V}*RE2mTLKQE z92Xh(7G`U^m13PHdrL6hD=WK|a^1pgig=bcOZ5Oig#jApnw2`4=fg|&Z=@JUIW96h zK3QQLSpt5=buia)Cz#`tihw5q_PA2)^1<<3z$XF6H7-AKLXKC+=1_3hjRY)0Zd#b} z1aiS=7aGHpl7P9+SzHnZbHB)Ng`?10;a5V6X96YyrUH%xjD=9(5aIp@JS;18ctgmZ zkPr)V*JciPjm|i>1x%>Tr=2>ZWobez;aI?gH$1V&JJU55#t*%4g~Or8@mRni$MG1i z@LbTJi#mdRz`POq+zC28gHO1xf>LPBxjdM1EXH;w>XM-Jn&TM}e1!%NIuHW&!V1R~ zaXO(f4TdZHeY}ExBFyG-j46*l@&q{LW=5{X^{0*?7csXvc305maBlIL<}-VRj|I;x zAzI>%ge*)2%#)6>wfsy1PF8T_3UaT4Id*IjJG}8)PzuWe=7xgtc!eXbKEqQ%h0B95 zp{oWB=PNv?;pnvSXZZ5&-c#z|e0>UlQNCW`z_mG!objp=;wWA@ zeFUdJaFv_qSSt{cYlm9j95i&Kb`G=ji*pJQ0aj`!3t|kqriu=M_2k@Uy{0I@4{khZ zJcTp3iJF?x(;Gk%t}LlQ0qEOx&H#D_(8aG_Jcsk29eCc0m*4(zM8C}i>@Wqv7BH0D zXT%7l)&aMS{l2QgY~RU2G?sI&Bby}h93Pk&wIV`%xm+#PtWv3n?u~XZs#v&&aPeLV zRd=ez8o}kecIhr;0mxlb>oaC?hTG-rNbBrp>E{>Ok>gu#VgtSUpxu3jTJ0X{HB8`# zyMn40oH(wF<dtCSC!$V(hvE=-4NVAPvu5mEHy0I90TTGZV-sm@1ax|!GtR%@(H{#n33r5Uy9c9gY>UNs8%pIS1k@hr zCNObbeLP^M*UkO_?0gPANbfe9sG}X28n9YZ?XZkOGT&2{H<13IV`>mpUK2OZ6I({j zS;79{+_cYMB==uTwzdz59YlDmT)VyX;>pY3Zsk>!oBHTN73DXB2ZNT@Ip{Xgps#}) zzn{c$Nb9l;RE3qzD6pkbZWCr>cSDKQJDA;g)P&0eyJ@U5!?2~8^Ua3YKnt;dZqG`K zb)^#=5g9($afn~bWX^8UbRn(FQ=EJFwr*Y>3o8rB0>g~}vfEPk2hGM~r~oUmvGhH7 zmv4-tf4sN0_A?(5R%-Qg)wlF?QHQ@+=P&2e8`J-W9&Sne!km*@7Pcm5mf)NNbk$w~ z`i9ByTV$|&aPhiuLA}9tjPXe8p_bl#(9pBVar#;F!N6F3ix_S+n{bbVn)@n$5eRWS z*}HHf%(w7*yP?7U|17UG8U}$Yd)RS>>)dsiadBN=Tvj(1TebBJwkU#q_kR{lcEaO$ z0;f`vZcYLk`+?sQW(RkSS6_p2i-;(k!k+;^YuGC{y?51VmlFg<(X%HOD{)+dh8H=KNyYj&NzvD zD}b}5lU{+7A&P(QiASkab}Hb*=}T898K##VKTKkpKlgkvT0UPP8pAi@-!>U-!NP1? zf#<NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVNY2~sS+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=XQ>nO_y_<1A9gmYZvUJzhpE!%7~lMj3ks1m$1HhF&+|G=u5lsE`Bc> zzZSG-ia8W>35rOh!f96MTl?IHj2M+M36UA#IYgVg z50eIjWQejXS8|f?TEYXIAnP!QNiY~gyOCm*C0r%cM?MY)gh8x}kNbUCnJmd+HQ?h1 z0E7Ye9YIn)B*?I4Ts}&s0)0_g#0pFJ7?0nA zRzD$zR0M|z04CTUkFMETn&m`LJQ#$LY>>PLx=F<|#2HjZNQJE31lg%kK}60bqc?JC zRxQDb0{RTAcq*woqp3L?Fn++$kO*m(d{W;7L1EcpFANF8ESRF&^$ZKxOu$ZHlPTJy z5H~ZPBuFM^#ll=*OCvqk2ErT;BOfw9LbCli;P7Tra1bQL_-$##sOe zenP@2coJx13MR;_oUi~GKi2}*%REiZ3gIlX>pt>0UvlIa$Zz-65W|LAXtlkqP1pt! zLZb10D|D?oTgF||HCvRbBlkcU*Cyq~otyo|52cEl?wbR;mstJyn;FQBOHM`Zx zFblDC;4cduI}iz;I$XMj4;0NC|iwFz%T1s!mx*4j&23`lRk{bRks0lRRZ|+_%|nG^Rbc@FTP5^}x|y z?alF5Z;r>nN8|(#J!`dYL9O>TocD)}tMy*Pfw?B61JFhh9SGTbFJ$ZNknOWWwr2_1 zK09RR?2w&VLUzs$**!aC_kV;m{Fsdm#=|FKgK>3U(4UA6A02XbHhgr*+1c>HkS7=j z3i<=bn3bnrTjSRD=_AXWRMy|WOSQh?l+4;OLS@5=;k+cGY@KA&c>!4CPYECc zU8U-^ZO#ZBvLJ&hkD!vh?gJ1uBRGZr_8hXlY0R4-)<9X~q!~)jYdz?6n;=0EQUcVT z94S16K*4Rg9k*TNzFwn!#sxv-Fd&%~Qt$MYQs~>;nk;%nJ&xj-=&P0F9{1~o=hY1k z>xELs$YNJtGIpS`;#a$nlwLu7u0~gf-=JBdw9Q@9ES=g^_s)~*S@**xs%i+gLF^%@W2jeOts~ nOyGYM_um!-a$tmnU^co+L0JI<_!3x~B literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_047/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_047/create_stimuli/_report/report.rst new file mode 100644 index 00000000..3045f66c --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_047/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a039 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 047 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 047 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012221 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_047/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_047/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_047/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..956be7bf20cb6f665854d05860508dddc5ea7120 GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=3kv3H&rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`QAOHSzDfx>&b4>5l zL!9XZ$RB7r!dzd&h{K`hxqc8wcct@@F2bP|#6QFve~(|q>(Qz@Mm{!OC$2wQn!CG| z`iY~p%dW$~w9Md?oA{dN!Q?nv-3uK(AWnXWqZL1N0@FtEXeqk!7zRc(+S~fXh@%63 zJOa#YXskYzdu^Ob>Ps-ExaYB2KMa5z$DOn4QC{bQsDs%fY> zvBc{>(gLJnh#6WYkTF7EOUTr}`hKPRpMMUIqZQ;B3gHy}UdRcBY+lIbMJ4yJT-Yk- zMNZr*2*pxN%*Lhmt5UCZwOl`r-gzR)%5J-* zblbq!qA#tZNRi3TH|pJiu&tt5%?J28pb z?fquED(y+Nt_%bpnf8v^56Qx+HTkL1?x^!T1CL~3u)tbXQreL4JBeT7&Cwh;j^6IP zsK(KIizNj_8twXQ(W|ucLz1`iOE?cjL)>FWm6siuyE4&EEzN)!YEx}gT6L%uxOI9m*HiYg58%Q-X_JLt%E@X^ zu5~XZW%+e3ZZ%{zsY^ND|L@JEB_HqP%7(d<%WoINvgIV8Shhzyxm?*Zcf{Owp-{$d z(!W(U&OzUp4Q=Q0Wu3vUpWr;f_RMW*Tg;bnxHAXCokDI~ER=PPga{@{Qz*LtL;`S- zSc+vdO{NRwFStPS6Pzb_c$Q+#*BN|FZ8U0QjWmkSLY9mo2DzZonMVIiU@)~=!~!#!@jU9v#Y|>AGFH73(^$?$ve-buF|VC)LQF#9DQ=Zz(=5Ajc}%p!B(lM z&q4Jh+Ge?w%Yi<)`=as^p21bMD#@Kj1w_KFxfIBPe7i#xKt~3-_}SqBJpai9&ptf* z@-GAYWzs<&rqGcAg_3YqiJ+8PKug~3)@l&#E8g{oe4=%D1^Kq=fHK3No{_^Bib6>j zguME2@IX^VT`Q?t{-K~29~AQ?q!qRdVGFVV;;t%niLzMGc8NNYTDx)d@nv;nI=U4a zAg|tSw!c>E&5qisD4-9w8B^OmGc8NwJu4iV4(5lpmxcf2L@*Ly9G~I<*;yD0G|NID z$3C1bQm!ez4$a$d%8;PE50MeorPkXjOm^VL}eh#&&reWs{VQw2HQYY@#p)6pL=H3?^g zcC!Ps?yj@NxB;bd4;IwyH55?djoPywalNc`d*J6|7*QMTN>y!1dx`|AR;jf}Mj@GR z<>n`lZm*?Cu&Sgc?p+kNM4FR=y?-I>!D0C5aFki!Lx$^XnL=qJbNJ%u51FKj5?AkE zs-om%@VHl(T6^uP+Uque#-Bz(;NddQgH$19GjI)VkobgXNv+IgSnvZzct^-dy;n9>FrSYt{%#XE%;Z?)5I%ZyGJu?g^ z0?2N?w%e;#oN1aR6;0e(#|?TS9Qd~oo(bU?jJ?il&0)KTk=_Tx$;9-T%XRUh}{ zbT1;fQmw){4r=bR- z)!D6D{~B&l74EyAxL~~LodzR#DuvPN$i;!9k!4)*iePkev>L5?Q0(9gwjH5iI^i^1 zbjR16AzIIEiVzAkS!g>r z?JJ5K8>|QNcsR%%fun=9Z(n`!?W>gdd2xb=qr~cdLhAm}X6Et`adrP_BLj0u$P7?B zkC=gwN0&n8uMR0(9a6YXNa5;`g{wmrt`o9wbx85*kmCOllGMlbs)2a;g{pzLdQ;NB zP&NGQkk_wI*+JFsQjwLF7T~t+-*3sGjK4t3DfgNGFHL>M3YKQ&)V=43Hs1Fa46YBG13K uwW1GHH6SMV{8OR|>hngCD{w*#BI`EDPI$;@j*f`v;{FGiS!=bq8~^}9n5Rtu literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_049/afni_proc/_0xe463d38146f4daeb17f42c78a43f4970.json b/Afni_proc_through_nipype/_subject_id_049/afni_proc/_0xe463d38146f4daeb17f42c78a43f4970.json new file mode 100644 index 00000000..44a89fc6 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_049/afni_proc/_0xe463d38146f4daeb17f42c78a43f4970.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "049" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_049/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_049/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b749bbdd06380914bb93baf234b575e9c484aa19 GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z>Y}K4^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFuBw(>=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>iJy^r@L=sc$f^-mcMgF1!k_UFK@5sICj+^>2@AR_W=L^ DAl#b+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_049/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_049/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a060558ae8d2dbb1aa9037833bb068f27e241c28 GIT binary patch literal 1293 zcmV+o1@ihIiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv>{(jntrH7h=)^n zNu;uOms{=<5JHtuQAG(4MSTEOmUnmd?3~wLZ0}uCR0&=xD)|lb0Dlbc{8x;3_dbY( z6p20QcI~leelzo%nV)a|&bHpEANQf;4kr6;*iGa_IL0--%Ud-AP!JC)_aT-m(Mr3IbS z6t12|mBcENbAgc7b1DqJcf&41fYd6DUhH+5DxiBVAXnNZ2r?Wn{1u+v><@(mRj6ji+$y`-~v(vq-2eGH`RbbqM<}R2*TbOUVyQ*D80LXt`hV}a>F1aL7*zMw)P2LngEo9%d)a&>F>T! zDHWtvm@-Hw3ut!>YD=N4;0Z}+Isu8cZaf~3F*Bv8FdO*s3;|KZ{ZK=pra%H$7UAQt zV(5eRL?tDpU<}ol1hF+}T9XefZZfJff{so|MlCh?v5?=#)mT8_6VQwxKtYp*bia;e zNGHMIp%5kIM7;9up0TPVN@8TRv7|n?M0Q20L057qy<3@(H9;*$^d+@y#i@t$tCgHc zHIrlt+JuxZ<2%zF(~c~kf}}ECq1v62YAhjSC$cF7Z5fDrr4oV|5i*uln$|ROYsW~K zi)o&q=NDu~IePeRzZX~(GPg9|XsO(Gp(GE9XbWcpAtVB_6?g_|69T5;#|mVMj9=>` z>rGV@Aw#q*>%7l3t~VTcjpVQEYD%%7Hu}fC(;=3DL6c-rZ{8iW9c8g)qEMpTUPdz= zR0o$gpHwof9bEL5_ga>+@7?$SgT(YJ15ljy~#nAf?t-hFm$gUD5EEL3ze)9dv| zgBTUxCB$kZyO|T55G3$08brswO58plOQnIpMG9rjqqpu>)930DW&BHj$a2QmITPS^ z+pe>ax!uPZ&Y`}s&+1@Nx6x3-_%nAioJO*->I~g;J7lcvyodgZ%LZ?~JPXT4b?x+v z>p1;iGqOwCXyT+K7|!m>l-@v00H>8;xiGNUSu<#*<`u<7W!0pVhQ zrQI|Q1%1DL#SVIZs|j7J1YOVFcmKI>zw{8O`UO~o*|LTjs{|L{YZj;E`WQfFeJ;bmfg$CMzcsR%gC;fPs z#~FpBKg#3dbaX=FK^~uuuxakq=W$B5`D<7*cAe}vPSW0BG)nrzVK(ZeeHg(g&QC{4 zd;)Re-{6l4R^Wfe0RI`|_\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_049/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_049/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..03c9539014cb392b0f46e605b069ccad58feffba GIT binary patch literal 2542 zcmVb!>EBVPES2+ zS$gxL=_DpDiI1gOgu)O8XX)la;@dGZ@?(~6M2R004`-9L^wNFknDE)&wP#M29?Fxz z!}3cPkHEX3?4u~8RuE#}3Q34v;$tc|Mn18^D6p+~5(UY4Vl6z8Et(8pVmr2oV=0v# z8J#MEA5IdX+>h3`|M+2C{_ns3oo-;?F_}B*uS!a(Tqu?b#fquy)XUYnQk0atwX#ym znA(&?Fp{}>$#|gZdX`?1hs2j5l@myzp&EwP?O5$br_oaTS^BLT*vOR=pUms`T!84=C_{UyX6brSQ4}WW8fK@_2FWL3JS-^X zQW-jm5{U>!(g>!y(Hf|Rd7v2&tnR?<4a_XP^c+7^yez$DfUq$zA6Q0r|6!JXA;Zeb z3B{3IttmUzn*0hMN5mh?lqG26z|bFq9Y{1NMe-s$BkJZ!gx?uqYFCfi-KKV+seJ<+ zyhpq}GE7)tP1Sg4c6-(`&)`QM7zC&`HM0u|zn0r&)_mj#S^948aWhLlI9pBNh~8~2 zg5Ko9k6GSMmvA{1pW=qtYd-10*o_%Fc99R|dg+m=Yxg0Ai?GPBT9Lnt3uURy8Zg*+ zVwh^XX{kr*zSYyfr%T1scB#sOW%=v&HSq=%!9&RSojBB7WjpnYz_>ye<3OBuQPE)H>|ua zjqK<@m)F)Jx~J3~vZoYx%ayw8=b&2mCVPrf56NCd*)5mrG|1)Kb>|ceokiEKQmoqo z4x$_v8TJ-tYrBKS8t0moI-cjlOZBg%7)3cQ zGCV$6VHDW{e#vzZ*KsF^DdC~$~y{{tSD9TMIU zvL__OM%=X-;jYmc$Buw8b@;SXGFp}<#1f7LjCsQod%QDUV`2Qz3s*QCdK`}h9C93w z(F)H6{kf<9C_#;n%Q*LJD+FXB11i6U0&9S?J4u^A_&orMoD|{?? zW((0`ZzN=4Dqx;;gzV*K5^%DDBUg}n6~r-dL`-<&m7o-s1ve`2vHQT8WDcE!gLm{aO`pH zgs;X0htT+}M4TY8M`tydz{j&QZE*m6w8U;`p79ad6ixB6y`%>FgMMG_m;yCub@HS1 za^Hf}AGpembF38z$$N)d-yAe_OYIzH>F4JZA`Gn5NfyKybWPPd1lE&toAsKa06)0? zxbXze;HK5ojGo>Al5k~71qwjlu5kv?Gk`9B`TQB2|Lnl?p1=6!_apjEE?|c#2)2Ns zO$D$Mq+97JO|=Q^^9BaisN%%~k)htxp zDOuIK)nW~!^0rgjhAaTNYifPQEY5JdoE>SM{Ve_LB0D0!?IsS;tM}X8r&g=ovw95^ z_~EXg>IEmnb&(vp$(Z<59(!Q{{@G<`z%|Van?H6@O z(1#+8+t(WgEZaIGT=27C*&ob-Z+V5%c6CX$H+4|&_E?ra`~LeC!E`aD>@FhF$<}Z3 z8;+ry`#NK{pTC~n#{mvt!)9F9_WnoFL?AvLQTRQq1*1ksOz`HV!REdasvWt z4|EflxUN1LFw^U1e*ktqgC0xoHkwvPJ1{k1wWiu(8HHrNqbzSA{XxgnAga73Zk#8! zjGD88{oT1~pFL0RJ)dmdI>1g4p{;W5_SW;qFMhq1S5a>2!wXfE-wf^#T3Y9z+q4FK z9o+csB#uK`mt~+TtZYVsBaL#KFdMrYO03?&?8d_;Tprj>W1Sg>EybK~Hq3^#5c}u$ zth88HIzbVZ;d32_=#`A;>=sQI(z-lFxrcA+=GC#VvXCq=+z24MEp>m;Y&?PruoDMK z-+_1e#yI-hJ8Nq{@eyIARzFvLOHUVd__KBXd_KK4{jcfamc%d2IjLP}nGC%_2FnK*uL~E{>ukpu54E1v(!2K?dNw&uKW*M07^`m)!;NMW?r~6aU*<0Y zA&Mt^7jA_47G7^RG}!;2=9NanAaG?55m&g*U4t1H*Y(9^b#t**TTfw&TCnf_&w|M$ zJdP)DDkbUWB%ra6SQu}3BA8sBY^Iwb6gwD$&rV4veljmqrEQ75r6`ItvdcATez$5> zD~09HjKq_|7*@qDNo6?bHo^!`^T(gB-s15G@*H7@MC_Gkp8X}g9AWCQL-gHXG|D^U zB=YS5&X!Jk1x|)2{;4OP;t>HpaDL>{rS{&|O+bY| z{BToZSw!)zWykGPt>qwzP5kUFXMV959Y(~DZ{2JLKE8STDg?S5o~7-#d1>Q9nG0i# zJga(mSdvC0qOpso7!LdQ1b?#BcpK}?S9v)MzSj|%VuxF|*z29lr+_cy#xhJ;ZKblq z9`%;dGUD*I6Eeb=vmA#)G1tl!8ESnaNaB3a(=XoiU>ahZouSQR*b>AxBSd2C7$D_u znAaMPPpl%1^*kq?^drlPnIb)XO0{4MUaCrEsgyybU4@mMVjuZ7W|b%X4^nS!r@0jX E0GeLxiU0rr literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_0x5c9bb7ddb1134a0503ef16fb2591e367.json b/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_0x5c9bb7ddb1134a0503ef16fb2591e367.json new file mode 100644 index 00000000..dab957b2 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_0x5c9bb7ddb1134a0503ef16fb2591e367.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "049" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b3f3a4a72c31d19c6d41cb4985bf6d13338cf5bd GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z1}S^xk5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f5a33b0cf928fc951f79ce358ac51c532ffa7ce9 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyfEL+%^!7o49`E;XIHOMGwN} z;N8~IKJC;kf+B#MAZY6zl0#8vK~U0YMXy9EB(=5^7-%m+1L#)u(Eg+TivE=jDebQ9 zz>U+5U|1qKocU(>k^AwNOMm=x?Sg&s&p1mDQ*cw3Ld-b0zz62VMF6VEFYVyF_`PWS zS{xPie4cQcK#^bdB~T4SX_jO$EAnL$F_2XH(P5E)@-XC#q*C}qM^a>ih?G%^{32mN zk>5Ny-KDK=ugDiYs(=Jc7Wtf8SUW5R?77|mr+Kfa3&Ak{xA+?7f zje%k>(RQ)D+5NKDYPB$Z(<_C>q!4_s$nqsP03QJfZZTh}GM12{9|WOgX2SWBswl{k zw9NbN$#6|hWvYlsfs^q9;i9ZWIEf^nBZ0+S!XkpwG)as6)}HV%BhFL=0Wkw2!)S9G zIB5uw62{X^t7*QgvG8e3tV2Hne>j15BcVEtg^rm=Jn9dDW2}o02LoK0G|q4}@Z);~ zL=pEL35gg1F|3)CkHN7(pH>zb=iq}-jr0$HTW_-xSJ|`oP$}IV`zWb8lvg2MD0jJzQMz!lHmAILZoyaCrv}qx3 zrXr4sip`1znWUCR`CJDHb1(`$%>01tQ-&FS)NUCTnU$LcFTG^>aw0f03sG&H1%%+m z5FCT2kT#}Z5?*A$ePsMx8(FWiBrz*Q)6}l}*yDW3ks~C(-B%-u8)~85X>D!dHc%Ln zO!ixm*Q&E+(xqIpMVUTy_oZ=dQeJ$Nao;95Ib}YsSQ`DDUmuS?F%!)grA z5n257a`D2207B>F*<$y1U1i=La&p}l~1 z0aXtErGaAyLMakQDA({|Y_%sCH#Q>Ovo=9UkV$Rl0nTzQVSP2K<7j;hV%@1BuzRnL znkJKG`Av}Y!+SqGer9IhYqbfUT3jnvt5MA@i9JoH`e-!p6VeB@=epK76}tw=)ag&IE7gym-4a;_c3Yw>!bxJulwgjCgyq;O$ND z_Wm31c#at<0dFJ5N9Me$GakUf14;P+>aF!2hVn(6C0tGVHhYc6aSty3$n3WI=xDe0 z>ge-VM-$*QB55$J|4mmp;-aF*%Yu>y+V{7fXUR!rcW<4@OW!;JJyaZXcPO|B|0Iczc1dyVx z()HT5;DCoL%Am?4s^nI03x&-XPLY3o4q4wc=1ml9sH|z+3{G4VxuO+uSkD(y2{#_dKbdbw6y9s)l$=Bv{1e z>1*Z^ifL&ytPQLVxsUU?xsAQam(7?GnMCQilP{s*mR5XYWA&KSF2yvae(h8+EWzcn zYLydIxhv&Ohfq0CrhOat3fX6P@iJzamoTl3x_*-{;C(D11Fv}e&EJ2T=dXN`aGRvT zx@@mlD3^`AcQ*Vj&$}N4Uc24x(bh(*3t@XR^g0_`ZRl>^M+I)}@eWs&*(_lcvDZZu nM1cRpXz;oK%z*<0Xg0n|VP5l=x5angW}f>mdAa0(>JI<_`L6-* literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_report/report.rst new file mode 100644 index 00000000..a44f9d22 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_049/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a034 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 049 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 049 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012481 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_049/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_049/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_049/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..33e661cef3b5056c2e71827a730cf233f076b9a3 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=3Q5IDtrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`=qK{&L6_=kAy@A1ocHCk3j$j7GZ#I=VDGk3RA zKXJ5j*>xD0mKmIKV_)+;m>fsTd!eHT#K{kFwB(0QVA?1iE<`sT!N8D4ds`nHadf~B zT^sSo7U~1L9`9(rhgH`@j_R2nvP=hIzT9_A)$?6l4TioO4uL+NB_+J7%d^kPza~!_d-r6Wb;BcFDkjMQemT% z7rDX%abxpAOw2~64>JkZ8}j37y&gxm_@3$Tkk29HQLf6e)M~1Yaj_N8Uo{N=cU$#VN2zuifCE27x@)<99KG{cl9k<7 zQ|YvT#cgxoxIQvM5AuC?zfw~h)n-?1cdC2RejMF|Q5$7p^<^i8aBeF$~0)~(9Qo+Lk3TV18yRpRKzAv(y}adbz9&T?0I ztjew3Cvo&C50{q@G4lE1W^Svv$)BK8-*g5%CJ9>Flk3mH4 z{k#%K@6DGK5UICn(?u`S&JRi6&M)CC6b*5Y9aUbmVeZmcJGC?iYWBucr7k^!6i%0A z_KG6^O^_{c1=4`Y@(Wq1HY#d$zq+foCE#=;FKh@!vRIP8R!34^#L@bt{Bd>|z`d2- zpT*L`V93>_a%)eBqxb2R=>TYTs`Sz<*D4LQUT)T)R^Zm@%3N33%R(71K5mhPU&_gH zSFUz0C1vqdE^gIjHK|KE-v95-g#{n)Yc=C+tG;c#aL20Mk^wpb|X8VM1MlcrE|0f+?P zAh8rnXp&49N?&k+<|jB$@Zc=Pny)kXnA&L6#u{oApNR|}GT5d@fkh_=69%8T6mQc0 zGt;9uMFxcoVasPQ3#n@+;u++EMrRtmGl9X>W*!U7WXcQmQtW$nijSETj~R>@j2Y}R zSYws~PZG-CrOVPilQx*_F$vK%N^NXXYIsbs!C-_98g^v%XQc^i@dgY=v|+O&_T12b zncuU$6nj0J;sJv_ii3fc;t69vVQm=yfN8^XC<#28!)KH$W8~=*+V74iX4f{iYJo92 zp?HiKuF#;1cA16Ro=CCChGQBdx0m8?f)qL-6V0Yr!*u<=&A<_L)3Sr{>xCSB9?*)|C{Okv+*`fX98*fdyd(#8p66*m<|Na-}amKL;QyPg3k!2F1QPNE@E! z2Wi7c$0^2RFU5gPvEiKzvWAI+`5rbvsQ2eBNQZ;Qb8U74Y+CFvH0L-%8*3vpYtN*? zZnx8^HWfx1)SAho^kzqer$1 zRiAtzrLw`Nix3-av_RRC=n)$&_{T6|E8t+-*z;rM_u)Qq&CntiT0OR-+2guICP@q{B z0y*~KbdhpZ>9%R!ep7-3z0b6byGVrAoXGm!#fwtyJcEM(2959{;7`sfT>A1 zBeWWAn00rREygt{m3y$DMz^kj60cXEc8TjnrPBpJAH#@RZK-y&U&|CW*D{CCkN%KJswi>w z{-r8PP6m&G9I1D3yY!?2hX-=f zSR{_&mLlXUWu>f6yPXU7EH}Nbc&Pb^hwVD>v=bgp$Wa@K+oB^*FsU{jV6I zp4c7cLa(lC`f%+$e3`l#}# zE2n!A!R1N?&T&w4pCxYuJS`aRTsjdZxA0=4EW!Q%QBrBxb6tzKHPd2_b9W%(^te7f ztS(P))!Nr^i>h$n{lo?1P46@q!c!@XmWM759E~jFidO`~o5SU3*@I#SXRz%Eb<+ta z*&?^Wk#{M%9M{(io806pJ6azOEbC!PX<4D-7B6=A-4s4($e|su4dSaZkmo4 z1~_@$^KO6k4ok&>AMc+nFDw|SpP7HVr1nhApP_?;71zNiSb?Ae&2-4GYbi^sl6ychDh3oJYQoh2Q@-1AG zZ{a$83n|~ioAMQ}$ydA%Uoqt?zMk*-95ON`Tmg=IK5RIvremPVj;}cbw3=HNArxq` z&~|XzR}|OQSP$g!aF9C!M+Yn4zWn0bmnre{;sg&ziPimt)cvFN%;h2C>i*GM2Ii8G z8K8C^F#{owE``ir9a6YDq;Q>(!qp)QSBETICuHI3kmA)L#s4EDsgLVb1M%<+RReML zrlfzNYWUe9uU`#6JLL7N;U`1RRbb%$)HX)GEa5*V#`(&{EsN|_iNEtdvTfZz4DPRI zrj@m)Ss1NnhOl2Ef7+U_rZ**!82^$4Jl}MJ)s>3tAlPI6g4E xdG@`n8GWFt0WrbnpAuD2pErtJffHg7S+_xU!b3)LbVNiK_dk~L^;EeW0073Te4YRR literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_050/afni_proc/_0xf629673497638fc1be530fc0419613ea.json b/Afni_proc_through_nipype/_subject_id_050/afni_proc/_0xf629673497638fc1be530fc0419613ea.json new file mode 100644 index 00000000..775b1600 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_050/afni_proc/_0xf629673497638fc1be530fc0419613ea.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "050" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_050/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_050/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ce003f01c51a4b3d42d350f37de84eb8bb27bab8 GIT binary patch literal 305 zcmV-10nYv(iwFpV%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{s+aIS5LxTL_)TiYL@&XN%tZPK0uD~b$lWpV%s%K_t-fN-^@3^Z@!Oz{tgeewT^i> zZ#&g^t`%|K#_-FaMYdCUqot&ZmB@nYgm;8-TO!vjmeBYTG3x0c6%RAi7nep`Ka7pl z4LG+|)Akd}`tIUuomH*2lKMOiirrQ+RRj2KBKiH_Z7f$l&z`k{teC}clI$_O;7=_9 zF9q~ezrc!GCqynq#m7|!KnPVrMHMAH6!igAS>D~*vvXd1vAuUmQ6+e(sN^@y1NTi`{2n;KrGX$8Zpus@a_iTnRj>QHzOJkPQ6=C zr~#63?cGY`-K|u~oR4a2YeJ0>OtZK%ReGEYH6;QjAQ0NKv!~yBw^dm#%$3c%Tw2gM zP2uWkR7tENITr|NHK)ShdpqnR1W2vY=*68bQw4O-1>{QG1VM%ahQG$M>%GD8<9-~+ z=y}-H%2JE_D}7(N4Y+_50V!Ey-cB{3kZ34T4}!3|3g%Kx4a=&cZ2bQC-{!iK>e3KZ zf+VxFU@Ep4ULplprZA2hmKR_wElTemoT~&qlH4%JND!zBt*xBkr7=KBxGXDc7XI!C zl~O@!g(-t{JcqVhP+JOR1y4vq(=kZ2b>qosgqbNth1tN5=Lm=*?nfF5H31U1G7lez zB|{&!Cn_l+1!JhbB#5m+)0%u}ag$M<5p;A+GHR*8kGcE-u0{d^pMYir0ScPTr8{*j zLplit4}~Zx$Kthj_l;F0Q4%AgjV1ND1+ptr4Z4yG>2760)(U;V+C8r+Eu2ym^ z)l`xRXcJPti0@Q$OgplC0+PyfiE8&ss=x2y*RKaWNu-+(Nek1LP;JH(H71cLP!K;OYjWRCIn2wj}^!i8Nbp) z)|;v*LWXEr)_I?4Tx~e=2FYL7)r4X}t@V!L(*c%&L6c-&Z{F>-9c8{{qEMpTUPeRpNa4QluF(dTHoJ>W3$!4EmoJZ^n$2y?+gifo z-HYpJ4_LeHwQhzSoj|tGPD1bQE=+V0ed{JRiTDIbxjysOyU(s|5V?wtg^F%w;`n=OG`dmGtjDO|#SuAP2) z9jE_mMs`UXO`Mbj!`WS$vK!b?bg1Lnrn!_UUX@`Yy>pvEW>lrI{Lb74HXU6zAYAM$ zwVS4)pzn9D*g@}aH=%2lpzFE&?ti%wI3Dp2q#&>7aKE6nk8K9;alRzlJ3v*U66hNg5vyhe>ZR$cAy+gCPw2`ROp} zKZbtd-{Ox6R^Wfe0RI`|_<}n Cw|6K2 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_050/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_050/afni_proc/_report/report.rst new file mode 100644 index 00000000..0ad397e5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_050/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a069 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 050 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 050 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072965 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_050/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_050/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_050/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a79fbc2b4c19d7638b0635d8d15cf5dc771497b2 GIT binary patch literal 2544 zcmVb!>EBVP-`Ww_pL1Qj<>m*cm)@ zCg@xLLi*4j(CMG(bN@=uf)sZp*{NTm84bTZd-m)(XU}54-9N4W?H?bm<$vjCJ_(OQ zED=A((Foa?N<&1kM3XQKqBu*hYo|SZOcOWGe#q|pIr~1loo-rF98nVZS?m7V(%hAm zoh-d|(R30Mm&C`?EJ9%jgR^w=Ao1;(8TlbgH=@LkiHEbvT6*aLbWHecZ`(5`OAqBq z;9>cNi$~zyQ1($2QY#3tZ-pepF7Yvy8zY}sVHDU_Jc)v2Jh2v@$QDh8FR&e3#IclZ zMMkHJ;D?h$DEFiF)jxmy&tL!j<9fP*eaB?(q`xXDrE;NIDikZGa<5*l)|IkUE|qsG zwT!7vNdzOAo0p7-s;+106?sT}8B#fc6dI~wXx)z0Zgd(gwV$P5xq*#bIq}K7eqWBg zP?ofPwZPhPu~exQ@8&S?e^ocw-|y<(zNz-xfa55^cHjn4mcH{)GtB*N$Lx2(i>qYp z2N8CX5K?{psM)gGYG+{e`s#spl%ku-v-ZnOrfVIFA4L#sP5djm5|FFnW46faA!86a#7%!iiI-G7v&pUSYZ zazb$=S8K|>YE6ELk0aubWy%t?abW0Azz!rDlp=YNoe_2OB*O2EFtw{k?QT;$(A2&G z4&Eo;9vLPqu%>D}GP^x%nP>1L4-5iSo0{2$gkQ_;GHX8agDic!_oSJn@13nCa76F6 z7C~=v;Rh^lr%Sk;icfJv>@}bEVC=>W9lOYfa=rA})U^kY!bMnQSgpw4#s#Py)_}pr zQ^Qo-O-nse_pP1=K3yu7wo6qOEX!ZFubEG?^zMcHNnR4ewkjMg=R!$5k#w!mJt$@A zO};XH0NuXImu9ooY+HJx(}G%oT{AGGfq78afrWqAWr1JF$>zXN`xlb3{wfn!bi>N) z(#VefdwFdwqI*i+A$v-3w_K^aeh#X2Z?dN-^^ojUl-+W*&U3X5w&{=ftD#f}j z;2_FzkzsFPwzgX-)@ic01mnH3vRf(FZN#RCXL++!4**mcpmDBQspEM*yj1@}icyr~ zBE#d86-JRQ;1^s6aUFMpI6kQecp_krE5$A!9M1)O5^!AO@)Htryh09#g2QekU=ecD z!i*=73qHHh7@m{_%yrJNxYp~vx9z#+%+ z7_IPJ(4UJsf_=ce5&GN-Iz59=xUYgzXwSJkm~t$}b|&hQp!AaC85Vqn1`j$A0`zjjyZmFHaEdAu1LWF^pI>~|aUDFf(dL82fU$TB_NlQqj6M+Cf&uMl}l+ z@0G0TPPJIWsJ!izwjm2Z?wVSkF^e>N><_@s$IxTx-A2>uXa}YStkzUJETfRjx0K}#q(A7G8bp=X#EtXB zmQiz7u)jMu?X%~}{pXXd+XvVQBD7Vm-PwBn#__~g_X@HaHLUg6J}#~Ly6TpnB92Pgv$fFX{09tF-xx=Ke`{^+Cq5#q)avJ|Z|Uix4u7`JpU-c(IVZJkWKYg4!8r%$ zs=WgA6_cUY$YA;4;&tJIdY$bUs7{jXAC8-Pt-9{MUY5w^0`5Qd`K%OJ)kchqV%(K6wmm^F)c8I|Ls`H@SP+Iw5K z02Ti5{Vj=Q5yiKc9d}N(mV+cV@v}Fa`J2V)Fd}|@`&KjX@vS>oA<*UUEN#EZOB)x; zTo_~IS=GbCk~AU_ja@v&aM-^i_>-l^n^oi(M9Nu(7M)-1;<4`E(TDc-at#1TLoG*I%>FXX$Lu|7%w0R6$g4kw+NQ@l= zr2Gx@TEp>)Riv?==cJRqZ&@)@q^D1*7Hq*wRS7CDgG##!D?7zL@@>p2Px>D_g5Vvw G6#xMCWd*YU literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_0xc20abc29a7f2cfb3c129121baaa625bb.json b/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_0xc20abc29a7f2cfb3c129121baaa625bb.json new file mode 100644 index 00000000..29ba639e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_0xc20abc29a7f2cfb3c129121baaa625bb.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "050" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4cec64949f16b7e864091e8a4761f0e2e3fc5135 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z^$DoHs>ivZh8v0{9i_OSh<{fhmS9a8co zDYB+@g&-2i!}ERT@FRWr%cVd6y>`Jq`g2CJql~y2%}7ESaS7|27vmw3g}$^4@8XZ5 z@oRBh)b%`KI3i0?Rne z)2xj9?n$^N!y=Q2XM~~A0>PrJ#4rh^M8zDExdcfhQsFc!^sRmFLqv?qn1sj-@Ep+Q z?!%-3AsM19%axqOyO!_(C&)SsViF9-)NZ6$WeHaa^^uQ*0bzi3@ln4IE0ZNTtOk61 z4}>uAz9UG=hXfhbjMGQS6wqgtMa~!rh?H0yA>dZBsUUAF=!~%l5d=CwAy!zz$9Vh} zwE77#q9Qm%Krq4ncy!I?(kv%}4>o{9GGUFY`1tD}=MmuKUR2e5sLR5Wn45Lkt^gq3yM{Henk` zfJEc{R_I!Fwv4-^Yqls=NA7_zu1&~`J2?w%fa6o&Dm14m@`&Yp1>KR1+LC!6}DnYIduW zVHRTPz+Vvwdq5MhKMDb{@hk*9ta}!#a%CMbPklX_nszL_fIq!{cXW_Ptgc!KuZRbd?;|+)~(+aH@|+13pRiu=ZTl8mGXkuf4q* zXOgHIfc7zE=ACdUYrUTPY-)-(BVTV8zTTLxcV51o8Toc*;oBMW?VOiycSgS5S@?Fx ze7pb8cQnV0l!Ui|Xe1#@S(u0PwK6WElYKQeo*9yr>o zy*mEl)$y44NSxrIXRX#PsrBB5^Y)N&wccwuFxNmjKy8HR0A%ki$oAQg-r11eERf#W zke#z3JF`G`&W7xs4cYwwNTZM0)L=Y(BsCaU=Oz7-)bQSrv#a5~A!k>^J0VXf5Gv?* z9AmaT{n8q@w@)8g=A^RzMvpnR)}O2O4X0Grjww_&oEXkaBFffDHJz7$HU5|cGN`Lm zy|&F6fkPI`pvogu$*ucPl`W3w6#AQUl=V$x-h^TeDr=lHL)mJzA9T7+C_xcY0;)YZ zs_+nk3U1TwxL%R_dX4rO7X*>RfMm9idZVwDg}%M5$)Z=(<0y`azFL*s<9@yHw7S7z zy-?OMve?y^j2+Zi@rzvuO0S?kSEH-LZ_q4R+UBllmQHP`d*=!DtovaTRXK!PB7!6~ zPhT^apqLh>hPA-*hy^g8ncLVKy==xL&jpm8yLt%JI<_@!{@5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_report/report.rst new file mode 100644 index 00000000..17a2c41e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_050/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a069 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 050 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 050 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012405 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_050/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_050/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_050/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cafd045740135b2b8986c265acfcc7befb5fb9b2 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq!#kv3H&rbUXzn13cfTaKi`fWVT3guh?`ic;cE zdYKvA6}{^-^g;R(z3)@>EJ$LPl9f1BqOphH?w&p8+k=C}x4`$y|M=IZOUYmKnPYlq z9^yk3}5$5_DMjQ@3&-H^ix+~2`x(J6>5dS^i_*?ucUXNDQG4iqLI&uBc(#+kh z)K46(U3MJ?rey|a+^Mg59!!p-)xFTs1LEZGakS!xPGH(79xX*T9>c(hMtfU7HR9-i zAGtQ-k1aF+c75K_d=IOxhaA;2J!F{%NOvvQkE3^6=*N1`z6Ay;qZ!JxP9|wtGsar^L~XLv$e6adbz9&Pq>t zqRQ>vr*ZTt50{q@G4lChNqAT+@h9laH=QAmNrG1P7rL@=Z7S3^Gi4jMMK|z`d2- zpT*L`V8k_~N_$U?qxb2R=>lkXYxL5r)~ijmQEAnoR^Zm@$y`s_%RYb$|D;V8ekmub zJ-ODsl$7PyxwzGk)ub-vc>g~)mzI3IBa{tuN62mG3uVhmK(TC(b_Aj9nL7nxJD)FO zH|gIh8*|V%rbF98uB2IXrP%A+6b~8fQ5+1l6i*oY32Vdn2TU8DLrLKA0zRi)86!`h(0+GJF}t>fRf~+# z3B{*~;R+49XqQ>2?G-34u;G}-*zKqIn;?Zw$V9U#)-YYaZ!>UA-3%<9+K)}9pT*SY z&`O~};Y6pACZ|S<&lqMpvsz>im@JGLOp~r@`fQs79Hww!G5vNyqu4Z9Y|_RFW8~!- zOdYwyVTyffeyWWb6WZ^3Ax<0Eo1}Pxy}`WkSJ-*C9}49!KA!`Sl_x27ErVj;9HtFV z^MkbEqvI6gQ!mAVO|jvf46}xbgT)>;K&THEEl7uhP8Ztj1lY9LVQ4OJgf`a3Xx5%d zgWX=YTWcwdG^n?dN9oP33QvE~D)%l(R}ducJeRskuhLL!t>7V$pg#uK^~^ikpYF0a8`++lv+Sb-tE?E5bZ18^@n_-b$A8&w&{Q}!=Rp#!{>`) zNf*VO`f%_-QwzFQQnlPeQ7t|w=1NG*ZyDkiWC6roRq7IDv7qe|btJWRd16- zD>Oh}z1wVmt=5|zwNp_*A8s?IwtH?`md1NlI5Zv14{a|C|H+A9B*Hj8!vV6hFcfH( zg+PvdI9;S%Q+gemx8IZ@LGQCNZnsg9;j%3g!3954mHplX^p>3!w~8~Vz1jftc86r? zXMqDoB_<36^}F@@vvP7o_4~c2{}sRX>XYyYYD@vhG}(7y-a(i z7)}I`-Fj`eSFJpQ3eZDC8j!)*J1|l}0=|i$1D8 z?#bz1L~x~Ag>xL#+-J!f0Z$7?JC{y`$t}FxtVnSGf0R@j_FUKEZOycpe7;d2ARdTOX|S1(E98J)Mm!e0!;;q8|B*>`1^cjoyk=* zvk4h8Au}B|ZL&pVJaWdz8TjWJnPgz#yLQIK9I1x6)v;?j#K!fG6B}coLYd?;J1`40 zm1d|q9=2O1;H|1NnCf~w!_!d&Wg&*fTpF>8bgsZ@D&xZ|X-E<5z+3_`Jh}MP80)zrh z7TOL@`-+8)4b}sBJRAr|;OJoO+gD$F`zj?qFHZ1qlvv$QNZmi$%v>HKuI?XgWMD1{ znE`6^h#3fZbSY%+>X72qA;s&26t51MzdB_8IwA8{hb&wjvhaU|B=vE{q7PIxASQVJDNzOWd85eXIWY#2bsJKpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zJW*=lBQ!0CZU+3;+NC literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_051/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_051/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..80d248c044daf1d2929cc948f378537579899690 GIT binary patch literal 1539 zcmV+e2K@OSiwFo)%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=Ao49`E;XIHOMHj+k z;hEOaXdZU$7C{lfa1gY07s;ZiGax958qp(>3Q3La1P0no&;Z<3U9`W^ujp6wS9(cl z9(Lfy=|nIrk-WU;+{;7G<UY&5kqTW;7!SWyB?{Z(fXtL>BtW9=wa+ zipDR+Nm1AHh~bnJ`g$M;Rs=~!(>$StUPdt`0*fF%F7zjlB1Tarcz{$ac;1guiBjmx zh=zr}eR{f!y{+v+FZxjD*>Ik(Us2b@K;Z*dnA-UnJ`=B z%+sul`~GRTCc`3=h-ZYM(E`Duti&)0r9{OXlDPy)BvRotEA*WM?n6Y3%9w=64DcM# z<~Cr`fRGGPmgP!L;$2O6fD>dL1~CZ+V`{fjtg?iwg!;(G!GJKpy8Ni$hn2~a999E9 zz5_xSc;6Ew}Qsb7__nLGoY_MzTTj667Wo&k$#j86g$2b`xf2Mgm+R{0JRl3K4$P@{Eei%1yvaFS%Y$IiqGFs*SS% z6#RsQQ}iUr#w1LT7dc@8D1NR5s+W11niaxXX4ie>alX{Z35ehBt09IBwa{vN+ncZr zBtW9^ek*jXI$OqF(luL@s$=(17}qA`#oe3*Ho);I^Kqrp_$PgHH2TDJJVYZmo9}Qa!#Kuc7NAp?jL|A*BzrNlk3J;%MLvED{H5<<5UwIGr=i`X=-+> zlVKKO>A+tWI(8ruJaxEqjUGl;2b?lv!?Ocx6GjM>)N&reEY}J)ki$BR)<-1Pof;5( z@am*#B59W22t+@4@crXwX7&TGh2Yd;O1er8Yi=p*NjTLpr*5Bwc$JW|&wYKh*%Gx!B%DNN7c}YasI<2OQ60pV}l0XJ^ zm8#cvI3sY#LK#$fgeuwFfFf#fM5oYSU!bgS8uKO;YfxF^q!~)jYkk@2HlYMXNC~L+ z+aO!T#?|7@%Wp+|1i&=dJ!=j zq~W@3uUJqnoATcAy_Of^?QOgjZ1}jnz1{M>_QqB~TAR^!6qyUQwTC-gm1eVqaZFzq paTpW$AI1IG1%VhCAt9KJu2K-!ywz>-?O(a?{tL&!Tq)`g007+3=uiLv literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_051/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_051/create_stimuli/_report/report.rst new file mode 100644 index 00000000..180d8805 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_051/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a089 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 051 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 051 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012498 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_051/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_051/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_051/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4a73800a0c357f8630dbaae8d4c8ba675ceae7f8 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuS%M`>%x6#){YD4D7f(;`G;%r6t5El1K|KwwEi!dI{WNhxus zeasBnm!LC!=x^v>>R;(ykisq{D{-nsV-L^n-o5wi#l_+*@YltE{^!$$zpv>Cb3F|s4u_uS`avAsmCi>x2!~b>e;=>?Eq)cRM$765`Pg)wxb|pa=I&PN zCyrJwyAA`>GJ{iY>}#F}ljCT4FLd;PIQc$~mi*8OOdG|+h3Lj(7#PxMZ|h?tjt=;t zYa{;HLVaM@;~mZSu=j*%XyrlICG z^1SXNEkG)Un4x6?86)(ygiP(r@Ba1o2fzErcC>^XLm`}^-wHXQkj)F(d{N0gEEhJ) z`3)|=wY8Od7!$LR>BCII^@jXJtk>h{7T+@+9`ZSaJj$XhORc8bs5C1zu@gsMTCT2H zeCU{y@*_U5J)VlCzuT&}I*Qn701o^R>8|DaarDj;Nmh1S zO{LQU7PrlT@xVm_D4k)D>U zG%F40`L!4Hvblm#fPp+``X<)6K7_hg>x#0nC&^FLR#$0vl{mU_hz@dg9Nm$jv(if^o`FZQFj$~im6R4F{7&MRcylzzjia~Q zFRF3$-h4>`k$S5(UGy^T{E+1B{1VPW(Gd68QRQVD<}Qu3Q%iH8W^X)G>e6FK;dEJM zuT3_f~d) z7E23*Ay=0wtvw-*-ltcl1EAFr>7`k&RU2x((yT$Pz^&7jxvsL8-GU4Mq(v5fDJRQa zS?pX&%Hr!>+^WlJQkQbP|KFPn3qIb-l?`(zm)|ZF%a)UXQrRBvt2PDfX%PSQ{}WwBPkYoHnpGN$~`G{qx3OVCUU_m@7Z{{2YL+JV~)@85H~GAZ>V> zAEXT*9j6$Ny%YyF#fEn>$QmXN=6l!xq28ajARP`G&$ZbJuxYWw(46B4ZLE#ZtUZ$k zyWLJlY$}X2s5O&E>CKJ`Pk+!V_by0R5G3zBmpV$fQdh<1^EmqCf`N}f!y4gK9fPeR zs?S07B-&aQ8*!B|L+xYE_ck^$LiDTQez;1^IS|DuA{Oa`Cgn19<+E2cCU+ z^u?e1_=}{2JWQb@0}3VKtP(*fHG!7A+Yv>G_9gH713u9@yn=k&bU>M5P|wKW3ngJw z7lgd}u)n3LMP1uewfsXtEp3(Zn@B5c7{Uf*0mNNZ>JViyr|lATBsF*A=;O=k$aHio zG(cXx+h~2I)*5ZKT~RZL64#4Lrwe{Qh7q;is#Mjcw5Ld*Y8A0bG78Cj zD>plVbh=GNf>k9oaqptACDNP}?EMR24-Ugehr`V39x_~C%M>=(GKVjYexFIIC~@`v zr7B8J29LWnskzsxs@+Z-Q5sKs%lt@77+y6@t7GbA+B3y) zB7p4H#NBSS@(e0K4-Jj`8rUT_#{R$GT3GmjO@x$M`9k&0m`>~P7aRQLIK4LguNk49 z*d69VudZwQaPAUZAb`_$3h--!X;<{Y<%5IQr330+a>vL|rM6nDw;osO@$fYIsQS1o zr+X2>m1-5vaZq!gC2s^gEg0@xIuRzf@M5DP!TtYHQfb(8U5mFh(_)TucOc^QxIR6s zE>CaO+E;Lks&L=^$OYp~?=%>~Qz?v=hb|5rjV$AeR|LbG!{un%gJK6~uY2pfMK^tfZSoL(+wJ$0!65V<-GygMGr9#&20!?rS3H}gLLPRbrSsQa&9E2UG#xJt zaPqq6-Tv$ymWl&E-alJjSTImOGyir;?VA=_oxOls&lp;usX%e9d^-bwpUJ&iFV3|2!j;4D@~1&bXK()o^Zg?3xa-alPZj#^|e1Ci%<`%mPiN z8LEy)t1!BHPGUW?0>rZ4yyD49_$gKc4WDEiHHFO1=JF~UAt%6GfJZAFxs+N!moo!v zYXFhAvvL@$tX&8`Lk9;du7gpq0zn6w>5yN`#dziDh*Ov;!ZrB{*WoLqe1$jVTev3Q z!gcr-Qoe;Z_Ut>)H?5DGL| zXgfIVD;3w)SP$g!aF9C!M+Yn4yn67>tCaY8ae{}V#Oi)R>i*Gs=JF76b^mBB19M5p z3{X3dn1PT-mqO;R4k=t6Qn*e?;p&iut3wv96S8o1$l}!@i~mPRQXki=2IAposs`ff zO-cVu)$o%;UcVZCa>(mf!;glXtH8khv2BceS;BuxjPuotTNc@=5`X7^WZSxb7~Ega zOeasdG5$FTc)sZbt1DI4L9oe!PMLWGxs%(-ldoDcI^^X1 z2A|J}IZxhrB*%OMgPPkc6nPMPOKun>swevNs?UZV(#avRdJ3A*)D>Sd17yh1OTXkT y$+Pcm&FBMF4TuRo|CFeL`n*x%3Y-vw$hr-(6CN^}qaz}^xc>ozp6ju>8~^}3rG|e1 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_052/create_stimuli/_0x6b31a6173b7df71090af96acd2f6c8a1.json b/Afni_proc_through_nipype/_subject_id_052/create_stimuli/_0x6b31a6173b7df71090af96acd2f6c8a1.json new file mode 100644 index 00000000..160b4f94 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_052/create_stimuli/_0x6b31a6173b7df71090af96acd2f6c8a1.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "052" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_052/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_052/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..620290eb356663364169869420c4c547d4ccec23 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zb$_^>n zPF#3R=L$h2l85K}&f!P;@aIdv|8wnvee~yyrpGC9Q<{>PGU5`}H!sEmB6EFd58nB2 zdF_|{B(Lg4#Bf4#z3vNw6+u$bB#UXTS5ZWXz`~D?bN%V#kWrKh?jscmp7kSCpyc`@ zqCu{2o}KRE#&$E;%N~{l1ytmE!Oit$pRV(%G4NUpaV+6|)${@d;wvs7l=XVV6H-5jNyvrr zfTS^y^cC1HH@oeJokpVp;hSE;6$Az3J9(y8$Pw{@5NDS2)iPp1Qt$&Ll*kO6FR+Y) zEJ=&F@1BLLGb~bxcuE)=Ef6fqS_G3&LR7>dnJbV)A{9>3T;Dq29z?{bj7WgY0M7tz z;XX_n5RxLw(oD%oyc;q1ag3}(KO+8MOzlR3RT^^@QxAFA9}osu7a#Zgurg_!!D_(A zcR&aO?>mAdd`OT{%{YCOoC5l+w8$7EK9LfOV+7m^HYMb31)UKV0fImWD8LF!_!y7h zf>u8!MpOg`2nfd58;@?-T$<%XkUSWKk#rEh0=Y@WQ^Xl$Mo5LM-GtfHs30O^lhGTQ zG^-Y4MS*>aRdgz-JEN%?8!&#z(2xjemVA=mLqTELVJ{2`!^}S=wd*Msu$e%epeB>F zNg{5hJdTl!&58w?z*a_jp#_3D8ipQ3euNG&g$O@sHjIkQ%1yuvFPUCVIHP7E%8j!G z6ug)Or|3zLjY*gwFEhe?Q2YYy#C4e^iCH0>rgq&&9v2IZoPhZ4z8YfKP)p5LW4jC6 zKmsHh@3&l6%ClwMC0(;csXBHKg>h{{Uf#`^Zvz~kGM7u0MnCE6qtU0P>sdy_ZvHQC!Gw%R2x#bv5nOxVtT6N<UtBK9jBb&mq^9!-X1P|dz8qFzv^pZOZIV@3+XJHT<*oL5!K0&?_7VAdzq##RTQd>&^BljFW_r&c@d!G#~0{YDQQ z?N?r(eDV5ZOnf9x@X)hXo0imOZ_9ai$hg|<)f|{>ARVAKLUaJK_YP!pHe_oyWNRMC z)@;c3Y{>RJknP!!o!O9`{{du>a!V{7w;+T3yqW$l_mWy^`+ydwX6oDn!=p$sZLLY3UO52f1jh)%A*K1W$!H|BLH)}XS+aXpZYM)N_tQ-=~1Atj*N zlcNd`A*kTGZrg3;nWr~spK(DDIr2$r3#qsIN>S+B+nUUKc{K{7i0G?j$vy7ZOV7$1 z9M(%k9V7ESeaYBCjTODzgP`;p>T@-^I{XUFf~9TlnP%bChPr>AP-oo_>!{2j+!7Ha zu|9pxT!CU*m>Sjs%VXxld}eNAZ}qAflROhpdhY2JD7b|!zM-*ks?;uuX$bw=6d0u7 zN|CkF2~@dj#Z3oc(U+!u8}=6KVR^j=LHMBA*lyr(yNmsx6?XlH*i_)w9`0~un#~eM5q*)e1Y%%>1YkD0N\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_052/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_052/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4e202515e52bcf6e92cd5cde0dc051d8d05a85b4 GIT binary patch literal 2847 zcmV+)3*hu0iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8p)EKIChdrCuuSnj?&grDgq!#Q8ra2rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`!h567xZ7BA+OMP=nM2!dKaXyOUZJaD$&@(v%7ciJ$rGnI1BuJ@t;3^wvhZqpF5^^ z>LJc_0_68K9bvAgVZ`Ck^ISiOqdU_1NC)B23gRE*^?$@KSfnqU|MEy%8h-^^I&out?Y%49uOx##?i7LI)Q1Uc(@QPJ%WKDjrO)aHsa`j zAG$W;k1f;(c0JzFd=IOxhaA;2J!F{6>aCE#?G4AU!Qv zX_gz%^N|zTMwA$({&%h&D7%Z?_k(3rB{C47(cylzzjia~Q z&nt2C-h4>`k$S5(UGxg={E+1B{1VPW(GYjpQRPJ&<}Q!5Q%iH8W|y8Sb?FhLaJnqB zS1j<~2H8B9Ck>b^zmSz`qoP*#tGjAj0!~XgaZ@ak#ghEBI+F4tjy5jkkF&!7?yc

C|OPdiY0rvBM2qW+$jj#`Fshx zN&jZaI0rprI*LcXMHBt$SynqtWXP#^#Y ziDjXLCdqWM^d%Q)eu8rZ56)7o`8tD-sf|W$tf5BnS%JYr2HVsqu;}Dq!r(KP;w{>L zW_lE-$e@rRZ21gkA$83}JcC@&=uD$`CNh}X%wv(6OnISRiha*c@iCL)F@q6u zYs^yMNkaL%bXmG*(gu?~CLy{;sf|ra4UZ`{7>uw%!;Z}UtTbUQ-hjb~Hf(mpo*No4 z^Lw_JVy|aYJYcX#aWK$QJYno7tPSHIFl~4aC4onC_>6L8j68ip``r=6?Aqp5Eiy(Y z6ps03IrADK))i>c3n zl|qBUiB2O;#zu-y8D=`OT4eW`EQ}aTldfs{Y?}lerm$}@{dPg4*fdyd(#8p6 zRiA3}lBpq`P#=ZoT& zE{ZwzLI1v{7IbY()p8F+wRpdn+d^7?(-1cy3n1<)QimvuIc=AyBdNI?N1t3)N2a4& zp#k#h-A3yhwbp2>?Xm*;aGNo;-80j&G~Tnqf$3m=V0&5kPfi3w5ytT;4v?LNp+K`N z1aj=d=_2K-(rwec{jLNFdY_eXyY;dRmu-;c996JIg$1Iix;KZc?Jgo$Z09Z zSdVb+~Bwiwr;RPMrp8r`}AO1xfu+9j?Rl};D@d;%kCy;ZKLO=(Y&K-DVMCdnuy z^DSX^0_k*{iUg}lYU1uiVN0YrDcE}#!X6xk4-bc#wLN6GzLv>vt!ECOAN?_tR8ivU z{YzDpoD3dyYf^KsRZ+X0I?(v@FbF(c;(3rNq-^@G!SxfL5RDuVIa2T7cKJyK4iDs{ zu}B=lEk(#z%1T+Cb~_jDS#Ek=@lf*-58HL%X(v3IkfSu7_LlgOmN2|(m{!Ns%d}^T z;Y0x0tyOosmGV=l06jD`?pt7&+!*`+dTU|fHJb=2wbF&^n=zf%;cqth+i`kj`d=|Z zJ+V8?g?G)fw1k*rxpX2-ZsEm7S%Ulj2ZB} zSY4Uks!uS< zvPEu_BkxiKf$Qt}EpBqZs1^&^+0WPvhS>pJ6=&XAt%6GfJdtwxs+N!moo$F z>j06rvw9e;u3rc~Lk9<|u7gpq3PA^&>5yN`#d!7Th*Ov;;x+k-*WoLse8o5Ao4+RC z{B`)|Q@;5(2*YiD}Lq?{AE5LEjhYe@VbPP1v@ik|F)`X1$gaS<# z+73?piiP!c)&qGw90*6?=wS7`mtTJOG9`XqoZ#UovAUO#x_7jZxjaN%-8)*(z+4hC z1JuqVW+3FzrI5L+LyA|26t5FfygFq5>X7;Cgv?(ZvT$|C!v7JH)W`Lzfq3|ps)4wA zQ_{auHT>d`*RO_O9P;|r@UtQ3Dll+=ZW|+CmhfK^<6Pz9mPK}|#NYWJ*|zQ-2KP2H z)5_Y@EQ~fXL)b5oKW)ud)0+}VjDJl6o^LwA+G@ph5NxubQ)V7P?g*PA`KmReLr%_b z@cE3G^W=?3a?Cd{sJX3tfd{d-?1n+2dZN#+`fTVSog5-7r=STu&q~BF5XKb+W%VIKPc77@ zy8Z#hn^#Z5UPMB+nQE5&BT4rn3qC-O@pXJ6AHsIc(mi%g!#DHI@0+jV@883NZEa#6 z&f88ko@+&%w=w)MXp!wy-e@VQVkNTRI^i8*+?L37%M~=fM2vbmNX7jO^~I&p)(>N2 zbpy_A)wKPHvc9|c++ok)KBcN@!<&$B13AS-4uoFsb;&-g=2 zz$*bg)i1H4);OXKC}Ow)!4RNu^FINg04!^32tw)~wdDll_(eR(&(#<8pZ04zVZ*95)cJn>hZ86UPZj34J)+ z7aQEYPv0dir36Y!XzD(syX&X;_P_a~U;JBt z=+=p(Ie524Gs#JzRpQ+?VH`Bo3A^y_qbG9#u}rIS%t&p(yK97}-rZW<3gftCc@D)1c55i+S&F=IU z2^FMLm@r5t3uyZ}wS`bt@R-CjnSexF*Pe{Wn3+P9m<{}Rj({lQexM;&Qy_sWi|}z+ zG4!xGQA!C37(?|1L2Nae#^imAn~ds|praF#QcDefEadlaH5L%~1T-ZGP|$cG-K%05 z(n&CQC`3sy5pTS^Ypg1Wk{B6nEUC^dkzJB%(4|~T_e&G9CaC3zzMz(^IQ3wDwUiU7 zW|B-nn~?Hld}o?t+L7f`kW?lsRJ&79jU|NaL^g$>Edz14P(lzRLdMck(~3rJ4Qpig ze454R`8k_eQ# zdQ;|k$Pg`xD(`cR>orH-BKfPjno=yNjc%{=c!*_S&?H&Zn|B9IM_Fu{D3mC-7tu@y z)xqV>r=?6P2N%8NM#EC}gS#`AJ_}nf3P_g6Zf1>)7>gYID}}6uxjRf0f|u!WOM@we zH6gagEmOv4NXz3^pjFs9`fR&}56?qI261Rb$joZDIsHZJ0KY!{>Fq&ObLy}W9L-NP zm!e?!)fFwju5TBZ7<+i|m6C99w2g6Wu6y_G723ecW_!75f#ziR@?|fo*xaWUTDGhyIGo8gI2c4a-_}<@C#| zIQ?HUvQ3(3;-n-P&i2Zb-NJ^VLmgK(&4oFBBf;bL#4 z-P8>QeZPIl4tjsH4qc-JUC-S2|I3xokxfITYTBBpYRfEp=Z)K`X9=NtY(ihTkA*~L z97kIKQN}s9HuSIeZUZM?PR6nS`pdun2+yBxlgP?sh{Sd^#IPZS2HHydS@QU#-$N4h zvQawhr`;jIuuFT7XeS+oe?O}8I3=6>)hrp~)!raZI{nco?hc3PsFQSI1fxOrcoYvF z!65eU@Q(?W<8R6Ue;MQWd&Va3JYYyAK#F?j(+$JC&SeVc{+owo9Q^}sE6-tb2><{p C{E86( literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_053/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_053/afni_proc/_report/report.rst new file mode 100644 index 00000000..73299fa5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_053/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a012 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 053 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 053 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073039 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_053/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_053/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_053/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6b66cd44bdc3710dcbeddd088cf5d5d767b2c5f3 GIT binary patch literal 2544 zcmVb!>EBVPFiWq-+C&kl|PEZAOz z!vQie5&DQ=fy6=Jhf$i`R8D%jn8Z$${*XTSYx;e9KUp=#I3%|3rH#i+b8}Y~cGBeD zdDC%ZJ9cy=OhOa{FgQ(CcVo|tsF5GiWF?Hf$aZl$T1qZGfsPTI?V>rc(qvB@`7RdU zI(Puy^+gYb0Wtgldq!Xf*s(oK#M;2KjUe<*BN~N%JRBJ_Peg;n{kPbR4BImD>qQZr zD1skW9HPvR#-ks9{P!<=zxhY9f;~&8?j*mK@=`HZkaC5Rp5Lq%*Q@KBLaDs5Ar(@p zHnu|;N!`4pJ(X28O|FQ2+Y=#`BS@hpYnsw-8O>U&){wht^2qT`K(Ue;~qtlglmHjli481PSLG*N#ro58VWVw*f=c%Nv>8)B5B%cRSKbJ2` zMd&C9c4!kM3}C8Tjh?LOyNdSIX!rC^PfwFe2l#c~O_LiM2x~q4siC!Zo~6lGBCM-H&Ntby<6+w>!o>&)`QE7z8NS6}=4!zmeIc);#3-X>zgiqMjz7oUSHtL~S=_ zL9a65XEbjoOE{m3O>v9w)n9gC?8*ckImm-@z4TmHl_!wGSy*$pkY-OudsFHYl4u;#s{8p)0H4&X6nq*C>>H{cIK%z{uRK?S5xK#Z{h)|f} z0>#7Q1xBIC;kQf&F&$@w7(Om>c*J3sDMbz&98EcV>@!?p@?$$-c!4YiIftE)!#rfB zxfzck7i@N}(La_r%ydp;i5txP!u03Fdr-1`FEf0(FBD z!zF$?t}*ue3;ZrxKriNIa~Vd2#UHvH95XWm$7K3ro0IdH*&I3xXfZf7*-X=kwZKQ5 zXC@adb_ZM*#vEozN64IiCIQC_IB+<*TS5%m7LRS#IOLRqB8QnFe>hy=kf~45m{VbL zKZwbqL4xT5Pf0L1Y5WNj7X0AQ4d3+y`kMlJLUL_S>FT|jYRIjx9D_Tdb0ZF(rrvf>kZ#NhN=x9I}?;gB{^Pe7g?!lXH|2QDuW&(Pcf?y38 zO6Idc38m5kx3rzEEW>P%L_Zvg8P^eY9J;m#%#4^J#-3O#OBGX+3dZJO0~sX~RSZ1wS*E{mB&gmYb8-%X6x|s)BmEL$h?}yYChR)4_z$yNEzWYro5G zIGU>OsFdA)`F?gAnGU75%amxHB3ZvWyC`yZ4=w_b(`rE|Y`{9Na8W=LZXfC%@cs)B z(I>0~l$HYIe05dYK7dlW1pzgC zst!zCm7n*h>1Dm!13P!1$57j~y3ta0bp=?hF1Kh#A(3+hd}W3*>V$7rbSCp9%49VK7XpY*iFw}|3ey$<&{sJXk@i$H*) z(e}9;VYY>rn>7XY{})-Mk-+yI(M7hyUFUAVjI-L_0W& zMsO;{$?C`_k%wp)A9x}dT^_9_s{s@{7=zD_q}pCQ&6S09fxe~W^TNO^R)pzB*(jHC z^PhSDtD5x8!n&iAxXBi~eAcbw+XM znLeB?t>g-v3}N&WPdvrV^~wfZs8>#2x>|8Rxomqu9Fgp~=lWp&d}WXbz7hYi@L&xV z=Dz8>E*!-V*TU@4j2Ph3!?pSI)5A3jMTm+XRIjeVpY77m0PUuaQE+}_(z*8b+C4zI zKYf2spjkxG{dvcO6Rr6mflmDTBWHdy8y$qU7u~;C_dR^?!Bq%!K0HmDAM?`2gd!70 z7`aAyZ%+~ic1R)zk1-tf*EoODMEe-))K_sn48GT)J;oNZZqU~|kxc<#$d!4Ru-f_c zB7M}GM@xyr$4*EIU&eAQ0>xY@mPDxa6+e!$MNhu^(1U4!O?rmbk6=sKrXC_Y!j=Y7 z_J(<*W_h+zAd#Boq?LSX7!g$@Cr_ycY{5%qp(scxRN7To*)jHzXJT4;!v6p`;lixB G6#xKF;@<86 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_0xa8b26774dc1bbda1ac991b50707e62e8.json b/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_0xa8b26774dc1bbda1ac991b50707e62e8.json new file mode 100644 index 00000000..b63d1416 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_0xa8b26774dc1bbda1ac991b50707e62e8.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "053" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9a9a8d8dfee71395abb3b8e1ca1022d24f24606e GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zc>OiSt0x7Ci`? zgLhj;`;48m2#NrPgP^T@NDf7v1wl!(D|#hTA*r>Uz(9Km8i2Q|hxQ-!SM;xRC}|&d z;Ku1jFf5TA&iBpmBX{`Ar9b|;b|HVv7n~(W3AhPMAYvR`;C=hzA^??{OS|~ae$Q&Z zX2)68%o9#y$jnt=0@Xm2W^o#^%q)|Tfuzz8k23S=;~r-uk-{fBlp^hiq(I5cMZ$v2 z+&nqmrHy7QGm9QoKmsN+Gv{XJvM+d#^>f^XNc53b(YSgbQv`7#x=+u_2INNx+GeV9*dCIe2+#7->bG4DS)qq#89r*LlHxLKZ2f++C!4o zK(SY7yV%@pKj<_X4GiD*N}(|*B;UzWvjm6WBO$?a&Z}j_5)$--B(zK|oG+;ggEUTx zxbL2Xt8*$7MMMIej1~wNWhKN(BnBM{Oy&|M5tOEJl9^lk!o!F-Qy~Pz4u}-d=I-O9 z0YE|+Pg1QW@vcR}rxD2=`XTs(F|`{p)k!3D#603re*he@EOR|jHaf1z{LS4Ly*cY`6RywlHs!BUKj$W+@F%#^@K{?OsGy&lTF$r5jPVN zMMOn*#e!7QTt;RN_sHtuu;*dqhva}VjPR3Y!>Y)x+yuPvlA7gMaAp^x+&BwJ!HXc6 zqNh+cHenK8roeqv{9F@NuhKZSD@2ndU-yy6`9dSdDE@q34JmG@g=VYqa1*zILP#>+ zZ<(o-XUn)txps>(edHcU>)M9AxRY`}4{&_STrO1_{%o#~MxWZQX9@Tdvn#!F49^jn z{q$<_!i4~O&dIYS-``c0di$u!4aaKA=DPOvvV+gv(%NZmJLLq&PH>807TewGB$NkK zIrx_ZPCn3+B6fswtsX{J`+{+6Ba;2xCg>4VQqy^av)o*;z8Y3>v^pZO;Z%^=z1PQe z8%e$RCMf#By&s-Dx3ljxngmZRu9d6Ru;LcNo`h3=)N1$%$)m~(U8$V{FTeKoDuOG} z6$I^5#_c;2N>#dD_xaS6){J~xv+!+=`L@o>w>=}@_AGqcW4`V4^6kvXw=)ah&X{lK zzxj^l*pY(pHgept=T(*Q01h8X%KK1lY;+LH7f~8>HSXK&)N0cnT>O#QYjn}kUgh=i zm#>e<#7E*p58d2qJtwu^-EiI=vaZ&E!v{mou7>wQo=_lG(C<0M z^78bn+_<@Y`pB{;Rqk)}*kfz`g-xdFa)z&mfYihv+%6E!BMkN z)G;dCHJ7X%)>z@oT@1>skiO8PtHW>DELi5vUE3_2=ArJLC)Bgm2UbVi$NAje#@?D`JElY`vGm+EOIUEry!gh(+El4s6w?^`wNqf2f-6PV zN+($5t`s*NLS0aa@m&m4t?OYHn+Aqf#3AJfHtZB@L|)t-`Hww!Db5{UlX2y3M}(EcM)f0gYJ+xato80Qp%Hp8x;= literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_report/report.rst new file mode 100644 index 00000000..d066c13a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_053/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a012 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 053 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 053 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012302 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_053/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_053/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_053/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..dfb73f88cf5f80c1c8d74b99014e2ad1ea42d38b GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grDgq!tQ8ra2rbUXzm|rG9TaKi`fWVT3gs)%$ic;cE z`!h567xZ7Bp%2oR=nM2AdKaXyOUX){D$&@(v%7ciJ$rGnI1Bu3@gM*CbRqqVKXWbr z)JL4qZ<1q}3XtcMD6ElhT z`H|-!{>VlHVAtneJ@B#S`N-9L%SX25BFt9?uBG{bXK3Ll@S@>Jn=;`w9QBWo5o(sH z2^$h`1V|5&h9PETTR_H)0zD;D|LXg~zh4cd|HezmHC4hX{=F!OQobPO3q@6USe7=* zg(4?xJ}d|i5@I&C0+>m--cX*@8jU2r#rG|jhkTA8k4jBZ zeB@e_@*_TUe4dkcYI)M;3u1Azu%5zn{B^_Nf2ZAOchy?A2{;TQWO%k0B=I{>WJTR+ zx72PMSlqUTt`{IP@*&@M_o{WRS!?yQPPeuz?Jdu;qvkkMgd>i6dsl~`D1h%SniO=Btc8NO5+9ifkcB*z)!O?z;>EM_&u?R z+3me%yDIO>wXOmLA6d?})sM)+sx{@Q+U{txJOht(VX(kjRaV=O@H?qr;?31vFNxpo zyr?Ged-Ej)L>le-bkWPS^Fxxi^Gi4jMMK8V*V22uoHk}+!7<}eYyh;1d zET7^GnG`aF?SR27q^_BWXOIgTooV#XLaX8d7JYno7tPSHIFm3oQC4t9t_>6L8jC^B4`@J#6?Aqp5Eiy*O z6rUi5D>Ue$J!YYfU!=ImhGQCIub<&>!VJ0*6V0Jm$8`OH!@x0hGq4S6Kem{D7E_-? zJA)>L6N5&YoR}FtWtbVvYLPQwvM^>aO}efdvuzS^l)-_`^gBhJV#{Q)MH|PAkuNcr zI`W3Y3Gc>04@xpzUjf*^V4x!hHIm4;SpJx}6KE*Jy|G^`m-)iKzr zHSIa5o>bc`ZVCeEgS#&(FX0(n)vB`6X;eTY+?q*&Jjk~@Q~`7pkc*!k?8Eb)Jn)=@ z!!Q3bz+a{vR}XI7Ch!hC8 z%(sNu38dR=sWPl8t%-XVg)Nchq+st~2)lm}JvtcWR(Fx<1$s`}T+1E2IQ&B{t)kS` z`+Fs+WMmub%w z!-)X0Td(c(s+DI@0Y+r%+&923y)pLw`PRb1k8C2O)XEpCZ^m?5hrin3ugB@N>3_`# z^~CNl7kUjtH%4=p-~s`hwKITU6HLFN4=x`Zye=J3?~*%4c`A3bdZYcg(nv<9@kiCi zJtf6&ddTkJ3uRzUSGzqgys}oVx=Nr^of_ zVRd6RY*=nI z$(Ohdj=W0|1a4qRo806ZSygQh^!_sgVBztGe3kxP1kftFsqS>p4>obqy%4m2c^&v#yfad7+@8F>*u9g?PNekxQwEbU8Dy zwgwRS+baj*%G!nCGqk_I;<*@wD-d+3TQ2#vJ&acl4>^^YB3_fPcpbiC##ek(zS1@M zO4s2lWqhSKX6cPLP}SMEM6V5_MvwARd09Y9OxO zl=LrD4L>{N^{e4$hrE6@{A9?v3JkrU+Q!J2CH&{qxKO>gWs#jK^>_Y9wypaI;r;d8 zw6b<}8>98y2=+@9Ok4BS^ri$-<6n}1A6RaEIA1e+}Al$l46JHm!UzG}_rkdyNp zd_E)QJbB}h9`j8MYHm|1@*wt>yeLdnPyFdspACIvkV9nk6f~h_sDW;U$W)-0e#u)> xX5ZUd@dug~5)*v>DNzIUd85QhoS1;fx(%`u9x}RXAR@ZB{{aWMFVVRi006s;i@5** literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_0x5d692952cbd51d3bee4eaff23316a6fc.json b/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_0x5d692952cbd51d3bee4eaff23316a6fc.json new file mode 100644 index 00000000..43bea763 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_0x5d692952cbd51d3bee4eaff23316a6fc.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "054" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..754c751c31f2d3da02f62e17ca3fba8ab56481c9 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zGU`fIaW8?2wY} z#6{M0t`I~bd3eru4nNW#f4=nlKi4nVC;ODMr!nN&HBSQ7K$K>28nHZEB_RVzr57IM*~gCp&PXDKM|3DfItWP-CC@Gr z=I7b1)6-qrY;^N%xla`kpUFI1aP#c4CwRaHHttd+1_-NYTsshQ7)0WLL@ex+3kJN$BZ~rA^5}$h!mqO zY~iFKKtdQ#Qmv->u1CV75wQ-v5WL|8+Rd2iBoaDeebT4i5IDxV_-HV|l}Vx$R|7x3 zLqHU9-<1%H5fHYM4wO{o=EEMcxuXrTpVyR0;$ZBPwRUi87@2Sg%NPdy%SWskx+@73E7EkGDVvf z;#MM}h^WY{n4d~&X_PIrkT8d%ppTg!k^{;x!;hK`!y>bC)8K`dG+T`YXJ#SFjkAOh z`Vsgi;3=eyDVT&8DR2)NztBY1t2Bpu3lSa9SR$#3`7h~kD?YPK2=y0{G# zh9r~ymS>gnY?*W^*KARykK6-kT$_}acT(=z1ShA=<&vf0PuY#}=o8cRGy!jFb|oms z@Eno(k1v-mT<{@qPMR8$*z8s( zq1>m+!N0_J>_8wz>?p>B>UFJ4+t`;={&?)t|hFeMpYcGjzMfX6$Ezw z)p6ZqQZK#69O}8h%3Zu<~42YBRyhuf4sB z;0kmFgAOR;<{b&8D!rcj?8KDToOoOF;B8Itw$6*UJtyAwJb2p^yzTSi?aYa{GY{U* z1aIfR@s8)1kpl2GV%#z3Rh4lc4j)R&2T*Nnb}*DDqBQ1e(%0?OY9~Fo_#?B|=%J&% z%B$ngUL8+>kI9K1de&;gg4*b9I&TjdR~x;WgL6$t2ceB4IvBF|R>ya256hXjzI zuF}=Yw%~w=EXttLBdX-aRtJU67*3vjeGXY)H|BK|YpASgRQFY*(fp#_siOoXL`zhA zYOL@GK?T=!+iojQ``J1ha3O)fp$CZ-Qg5;=h0wRRHI?`BY8ZqeWLHbcJ?YPuo|ZQ_ znk^MNM&-NNC1ZygD}1qwNo8wfAoTd^@GCY8l(xBRnuSxF>fU)$J?nm0CuI%smPoLO z_1SCY3W{lIG^`D*j<|>Oxw(zK$yUvn5~)P#xtpz^;FeZ=V`Ke<)Gov{rha`U7?$8l zQMJ+us@%2WrbDP4DAT@!dxab@ym%S2v>!9AjkdGBob-3P4)TP?5eZ#DgPAD{y?2wLrSvrD^yhYH-<;~lOnvsuD0WUuqk n4*~xN;ox-+m;(p!(QJH`!n_tOZ}V^ePW$e^1m?h9>JI<_K(_Ue literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_report/report.rst new file mode 100644 index 00000000..5e16c65a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_054/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a106 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 054 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 054 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.013562 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_054/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_054/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_054/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..288f5e6b5fc089344b3ca17a82ddeea9166f9153 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=3Q5IDtrbUXzn13cfTaKi`fWVT3guh?`l2YPM zd)X=Og5KpB`U<`43-kf{Dm@EQ*rjASPL*iv;kUbI&-wP?VDT;Rm&Jel^V5aoFZ#?e zy;BcyrV}8)ujvSLJq;rcho0y9K^)zc&PO^3hgJ}OAFus2ei^Su%jyXE*mRw^_Hbe5 z?pEq2j#e(a4g=FNgHvwoYn}&_<7jy=bo78Y`96-8{Ll$Z8^yzg=*A-$7}98O>tiF1 z4)~#KBmUSzePGw)9nJT!>UzjgJ<~&$=^)IP`;Mu4zN@Rj(09YZP@OX2RUGz?kshd~ zq2@M3UiXm}AQeN*&@zFH5&Bv}ruNm}|84x|Uwk)OLXM#jPSJ0LoKVQ-g=}6_a$BXs zMk&9+iNy_ZONfct$n;?*;d(=UT&>sR=oa5I9Uk&IggnYsS(aK&wNY-CYt>F1ePy}2 zX7Qn8PD&5?!1j1f+O1|uo6ig4W_~?^$@r^=!T)Zn-s&jTP6Ke@he&rV*N>xj9!s*a z+iEJE7O=Q&4jk7YNOihs_jm7Puh>8n=oplEUcc)lBKV!akQAv<#ME_ zB`eKx1A2b#1-)#pAQWIA&zZi7HLee#?$x?gS=p21$7-vqw7W_i-8e)CIXjN-$k18t zDvwpUwfiKFKIP%^@*ze(U);=X6*u`4bn2VVfX5_3OM7ztIrxD@gOSfqv(v{`l0^6& zo5bw)exp^9_M~b@27(Vwd&lgBWMP%6{6uNB)mff_N3t+jV6`GCElBvC#4qvYXpS34 zZ?~UU;^@8kk^&<2R&BcIW!m{6$=mrQoQ0wx?y;lFi#E(%8f&MP=0MHfc&gN;N07ql zvdmsl^4ID}%8NK!zmz}D4gRoMK}Eh#uS^F(t5cT=vhYhe zS?MH%i7i=o!=|brXF3|i0=LsI1rC9TI1|L%!joMg4jp8$r!9xby)F`m%Jx2VJ+T(!H70&cEp|= z8Zh&FwwGeBXHz_2ut#w)&{8~M>?f=Z;~y|>cn&3jM|1d$a%GG>eM0-)5ykA<=2k5* zMkf@H5yKT4bkQ!eP}>tJ7TIu2W90Ty{7sNTCuE}86l<8S-?te!qHg+@PVGk~)6Zh+ zb6};=pm3toNRzRV;!}p1&a4*MeI^Sd2GgW#nm*em0f#BzbOk~3&NHc_bjx+M+I$vApIk8T5olN=oT_86 zRjTSUP(6vZS=`L!Kp)(FUVZ`3;EGz2dP-JuGgErVSA?C=1d|Kx#Z zA0B=Ar#}8N=^zhN=*WOVNjR%SP)bdpCGU2sRfzT#@A?Bi(K@_>eA{$DnPE`R$l(h` zVN(}`yt>tYpsAv+ZK_&+OHhjsiup~X6*dfE1F`_(t|E1avY69$i8_*+yK(gKWp!ja zx)mBAuikC6zE*3Ew%RT$pbxhhQ`KAbL6t}5L&&D*a^kf8Tj8Mj+6%W&BiiQs~tsmgwD0(#5N3LC|l)LyQGd8Ne0VB5xOo(3%rjzqxo(s-0(W5P+PP z@?8D_T<0Zb70`s!NBtS-{(H}51 z31@^>qYbm}uCm3r2BmTj7S!n06;R^!>eDW9y{L4$;OAo)QR}U8MQuuZiUg`wsWwSQ zA(?OGW+#wNx2Z_5s-!0FT@F_gWRT+o=PMKMaGw!zG>vsY1%8?;2b`@d?q$0g)s14sMs8RN(MH zP8y5EG2Bvwe5I_E)oHhL;hyED*A)*nAMvnV2cCAqqX{`m<7sb+A8850tA=THOubBd zrWj5Hklk8!w_7Pcg$mF^L*u>ycFB#g|HE4g3$NKkNU4=BRNsv0v<`o_I?s>OAdxxdsz>oLOmKPQb)X&VnT~hm|g;r-Tpw=^n7HBF^Tr1tqz~ARH>rB3q znN7%$37P4zX_GA?By&cHv<$Rq=O-?cL?=14W1TOGTmLu_2{II%JMDwIh+vjek0 zQ)z~(0b0$iix3Jl zS!g>r?JJ6FYpe(IcsR%%funI*MDkT@Mu(i7 z-{A8ZG3Ut}kK~wdU{G_L1(64_x8#OFqI#lFulj80A)Oo|E2p3dOu&q~BF5XKb+W%VIKPc77@ z{#gaZn^#Z5UPMB+nQE5&BT4rn3qC-O@pXJ6AHsIc(mi%g!#DHI@0+jV@883NZEa#6 z&f88ko@+&%w=w)MXp!wy-e@VQVkNTRI^i8*+?L37%M~=fM2vbmNX7jO^~I&p)(>N2 zbpy_A)wKPHvc9|c++ok)KBcN@!<&$B13AS-4uoFsb;&-g=2 zz$*bg)i1H4);OXKC}Ow)!4RL|!zobJAj;bAgRTmH@!6_~lYzP!7>!Lh6U0JHZkviAW1 E05AiUOaK4? literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_055/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_055/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f966fd91e022c02d851bd3d9f03944cc8947954c GIT binary patch literal 1292 zcmV+n1@rnJiwFpS%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasG-+;4n_ko+#KS7Q zBvP2Yb~gbbR0$PTl<-j02T)~sX3ngg_1J^$*-eTn!AnIYzhNHW$MDX-;&^8ELL{U} z%t||BAKT|U=Y0Oo&+EUl?f0t3eI$8tSwK|q0tA;3fgFdIR4Ewm*3a;M(N1sZ-BwHu zkd$lh)*|n2CQ4>}TzT6RYK&m&!R?vSlT4@?5ikXT(4L(={noqP(sE(0Oy1$rg3f3H zS6Aba#43_;fsi&bDh$5&!Yo37#43$Z+-@_KL;GAnrnHR_WLRMMYh1h49rjNKolXZM z53^cXYH@yT;7hj+7my$zB`eH(i3T(h4F#TqAgnHfyF^pN(lRgVxIg~4ySAjdFhms~ z$-FFBid}}ANDh`M%;UD@IT%ax!n+6OD#nN;Hw;n|45~zLYmaf$1fU>X7Ns@Ic=v@$ zs36sW34>&^fOapZwh+n+9+Q|R6OicZ#*^_FD^rLPtAQWS5fDY(k2K_J3M6o4kv_eQ# zdQ;|ks1PlRs_yd>H)@W&LGoAkYD)1!ZFYN|(;;31gD%P9zIk`hD9U2WMB$2Zdl}7i zI68#9^|X{p72rZ!ZZ<4s-@ChW>$5QRqJU(%>{iy;h_T4Qzf#CrSi8eSA$XY{w=|ei zSQB!4+%jc+j@V>L*yz73l;6ubUNKp ze}D(yBgASXyO|T55G3$0>PJ0a#%`aFrP4s)B7vgf(K~mm*14)h8UM;3vWziy&IGu< zMs*f8xA!E)KGZe#d6g{cHfu^4f9BT1Y9t#g&oDf1?lb*=-aQ9qw`E(_G2~x606w-npG%Gpf{h{m$GrijJ-X2nYKs za#ITm#(w9DAB_H1ox0`_3_Ww-{jX4hBAbRvRkt-!CCe;(>y6v3dkLX>Y=W*l#EV2` z99vreQN}s9Ht5$ow}~AuC*#<|^ CpKy!- literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_055/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_055/afni_proc/_report/report.rst new file mode 100644 index 00000000..5c3db00d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_055/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a026 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 055 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 055 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071081 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_055/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_055/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_055/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..47f0e3670a7f20a2ac63dc06e8a8078debf10851 GIT binary patch literal 2540 zcmVb!>EBVPY5WYUS7j7Q_7t(`Fe5Tr<(s$$b3M56|OOn|cdHy99Dl56A7Sb(I|q|;t@26sX4 z`V7731N2q;4t;{21u5=IvQytgGa7z-_Uzen&Ys17yMI~z`#--}$^X(@J`N8;Bw#;A z(a^FH5e61P0!hL!h~g~0rXKb55J}uP`zgEo*X+maPP%SRP(*OxXU#_|3v(BicCz&L zY12uJT^t_>)5r=#7@Vc+yNPed)W}a+x)vpVj6IZ%SJHEjp<~QuJ8Ms!EZq~wfrrGm zE*gS&1JSplkeES;d^5x$a45Pp{<8c%uqp>;nL^Me4W^wJYmH+DL0qt^j1F5;0NM94`( zNcFY-M$>F5?Y`OVDZA=^mY#=R4;3JKI!aexDp|T(lq88tI=a!Ww?Ohm7!L|kNiIQ0 zQNR%zM^4kGN2L_!m^wySH;!44!Elp=ASogs1aB*O0$Q?-lxtxiMTRh6C&4nD%( zHXbB2u!f>PH9B2$k!SED4-5iS8miHOgkQ<+Qft2D2U&Wy`@E5*SC3Z{IHGl$^Ptz6 z@N=5Cqa|ES#iqE<_Zly{Fm`Qf9k`Yc<$CU!p{b7{h4ZlRpi&m!$Aywmq74|Vzt9b( z)i9NPWykEQ;M2LHyeU^`urz<2o@%_v(tD@!CwNH=+p4g?n9EAyv7o8-&aRxLH`vPb z0Cai^TblJ|qh)IKb`xp^c1>Rw`o?bIJ}mr`4h{TNPS*Rn(mR!u)eo7tpy_5_mwLAU zpYtm#5!se%4&IiETcvW%^>a|EdE;$Ks)cyFENzuaH4^0V&6;xr2F|=|ODfiE4hK<= zixhivv(>F~u||^Z1sH9Yq^)wPW?OWMc$zomS^%I-0f}?Xat+P$;d1ReA-19%7bzYc zF0mEa9Dd7mET-d*Ert)v93FGnV@k2h2FEiF9|jCpnfwrk3@?$xAm^|fahQk9G&kcR z@4kHc|4o4iexKQ8_Vg3g!EIY)k!DWw2 zh;1>~rkJ@#rVKkAM#N#$PVjJ1nh;Ak;xJ+jkMHr0b&a_3120_SaNsdK;&8}tJhGN} z#_7*^9nL;r)(Cy(1eqMehs;+_DYR!y9!wbKV>=eL%qhKNc#1e*p}~RMZdA=b6n# zi@YJ1g$ajQ(k;tgd?o=WOE`2nxmUIr#tx4$YrNx>!V-s>pphbH@4R-pyp3*irYS3)wN9p;V z38z1BmFp*1D-e=Pduq?<*ELgV?`7#%Cln$Ctkg;7#29o9#oPndlXIKZsw4qFxc0pM z0?y!u*--VaRtJ)BVL=57K;Nz~2GG@kF5Y_m3eJCe;CZj#eE)|b`92rW!xRJ?z)*6Z zO-d-$Hn^ql^b`eVdng9cNX)s8XrRc$J}@(4M+o_1sUlZxSuUCnhW9PAY+F^+Dn5|S z%Kb{QimcM6BX2?$fZR3I9%UBCxLwYU)b>u6-aO5Yuy4DG1N7>0tMk%qwz_7wZU8^r z;#9rh5WB7=hHf&#J`qP=Sb%?e85qmZPYy_oyaIH^mg^#*W1r81)D@%OWqJEm4H9&N zr*S)4U58~`rGyK9<}CZ_4EUB;kT)v}s=cm(dZ$aXbn}NFmITv9gwVT)K*k%t&2Kom zX6$H`-G239b{pF+rMIh;XdNS2zdpGrN^cJ?0+7>MQ7GPrbzbA5fF|5Nv_0VcXCR`h ztOV4y3gmo!UIAqwftQ~drrI)rPWLs+`R6?PGp;7#j?ig!Vbrxdd@B7Cmn(0V7L8NEf5xwIxutlYzob+hW2TbWDd7;XfR-KMhBZ`7Yb1=xvW3GczX zd}HkYsmHGNWW}6?(55M5ykaJ1MYE9bGPyrfzXP_ z+ox`X`4(Pn)m7O4U*?rY!XR)(&%!Quox1`v&adn9%j)`kt2ST47Bykt{htLBad;4q z;Z#b}^>ILA-=blBe!QNphfwTb3_d%uhW%t#s0f<^eM^xfVQ81C!t8#o($!7|>3QsjNlfzRp3B3<^OZ?r_(uHOLBkDLm^*gh zd2kfp+lcZr@o4dVeq|<@B}%`x=CN}L^cI{A=egR!fH#KoAgm{ z5iKPSpE@BWd^yW;2o!U*R2HGu*McO@7d`#@V-KbwvgsMxIDjpIZ6mU9j2s=L><#lu z-SM$mB(av~q@8|dnlV)*M^C9HY{7FCp(Mx|RN6&Y*$MJ3-$u0Zg#Q7I`6Qva6#xL1 CMepVS literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_0x452ae5708964c457e7513fb29c2053d3.json b/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_0x452ae5708964c457e7513fb29c2053d3.json new file mode 100644 index 00000000..57ce4945 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_0x452ae5708964c457e7513fb29c2053d3.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "055" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..652c02cc636c36bb1e3d91ec8534a35ec201b552 GIT binary patch literal 590 zcmV-U0TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iHt-%kwB^SM4*uABV;&? zjE0es2{IZ+#>2?i1Q`z_lVN1?A4okPX49ZMoM;+!t7D~4G!4&2noq;Ck>=CzB=X(_ zO8V3qQ-7;SeCU$H>BE(!H&xfKKYDGAuH?uCyUDtMl|U|7sC|j}?$`ZkI#!@dKBWNT zm`K~2Qi9ZyZMU!Y9oy~8;QYMZp7lEI_KUxuHS(7gQgC_g6Udp!C_^M;n4t<2Bz&Fj cQ;z4Dz{)Q~5QLxN#BUq#7B>eUR`>`209{@kJ^%m! literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..67973fba0dfdade5cd39f40e86039d7ac9983224 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyfEL+%^!7n>c>u;XIHOMGwN} z;N8~IzU`z%Py{d>1Z~|zawzI72(C0*(JPS(Nv-V!2HH!|0K8Q_wEw8TqJO1BNxN%1 zaN}en7?wy5XTBMJQv`-#x=-*dT`nrT@o!wz#_yoAJ9nQ`>O3l2;gZUF_mleP{dH*iy#nE_YtHu zQ0x`jE;cvX4?2xT1Jk#?QfN#H!FRIMEWrVI2uSc8^VKqA2?_c^5L%`-oF}OY{WMOB zyziY1SLakFiiiX_87~kn%1VfnNDMj@Sj;6XA}CGcBr~`7L?1KaOoiYRJ0MbwHrK^T zLx6-Zo}^k$^IeUEM*C|V09Pi7Qd|xE_yGY? z#C=ynEJi>qYbNDma4gUlrA5j)c%T%OhXk<|Xv&axG5SR-5pO&`H+i!PDUV=UGiyt_a(z+$GtEDPPuoCYBv%paWf%1kxjN}(?Z-z zL=+Jf*%k9sNpl*RxfT-UU=;K*^8>O^8D{udvte0eS8f`-@RFM4Sa4<+qTDzO2%#T= ze+-^N+Sr0gc$otCknwX(WW7q`*sc&wl6>9A9_I^=93lDheKn%Ep%$90#={NV1`0!x z$$raBr94|EUCOmvl<7lvUs~5T<;CrkdwGJBQ|5BX((o5^V?6rQc0EhLo0?q-$}v1g zWcKr`#S0gF2%M8=OTNFWD(&wfC)XXzDO>B>H_Hw__eyK0x#g4-96P}&hFNTPtCLXf zQ{~`a;yd|3AVus5 zb(=}O_$EmD;r$< zpeq=3KpD61NGMh5_1x#jrnF|n+nNP$Yl63RUcBuY@wR8d+n(TUpBHauM!cO_@OCD6 zJO7V&Jjad{fVU9iwmq+^jQeo#NK!t4YGb{Fp*#_#F;|nmjZUq0+=GihGP{i)I@+zg zKKknQ(FFLIoamvKTdn1w)_UvCyF=F1TCe8dTpQ9sXyb?uhU~o)vUzsM*4ZIjvxID& z9kP9P$o4ED+h>RDoE@_B5g{!vtxxevakFB*AdTre)n6+(%%DNNcc?q&;on+H_0p!M?5?jef&(71D1%CmsFE996x@qrIGOqO9J0P{&Fd)EP+8Nc?yE+lx!La2QGybpC8|9& zR(OP)5yIL%YtJx{7<-4E-etRdbK2^O(_ z`kJ|fVp>`an+H~h+{5|Y-p1aVWjm%sDp7jwm?ae4G8f<2SUo1S3o(tUUq2NLOK_#A zTImE;?n-gfAyf{OZQsGYLiQP6ysTN;kD1n1UB5L8cpr<&pr1YY?w`Nx^S4KEUGTS8#L-r;M o{Sfef5DwmCfH`mgAI-*BDa>m==WX_VH|@Ls0eod>(&`TY0C+w2mjD0& literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_report/report.rst new file mode 100644 index 00000000..6814650e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_055/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a026 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 055 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 055 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012851 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_055/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_055/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_055/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b356e5ec628e3d0c4e96947aac924461baf4fb54 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8p)EKIChe0CuuS%M`>#*6#)>WD2u8R(;`J<%s&&LEl1K|KwwEi!e6ieNhxus zy=(_}MelmiC+Ji3J^Cs=3sTsnWF=0OXzby)yJye&_TXUgE%4{XfBgH?h2$^#%rU() z4{@dwAiuBa2y;CRBMyh2=lVe$-IFdxItYhW5dS@1|4aNTUW-=L5%RI=I&tmM!pz<6 z)K46(UUeM?rey|a+}PJV4<^Ua%6{nR0dey8I9m2YCopXk4;P}P$1pIY(cad_MjRdT zL)S+9iG}*WuE#r??_t&TkfVC0hb+@Um@oGoQ}ujTSA(JNhJ&FxWx}gC?42MzP)$P> zHaB_QM_PbX3^7B?1TseGYYCa!SATo-$cvEF%-fn`n4#C`D{+i<_e0iUCM8k zas^J@%5CQgF)M5oLJb(Z6q)mf88+n-)q%d9i`f701o^R>8|DaarDj;Nmlk+ zO{LQU7I(~n`K1^1vO-?W!$6KReG_Y3A41))b*r+nFUe2TR#$0vl{i{DLWhDKM|WlDEO(VB zs@&Rp8b_b(6Akkpt^V96~v6Unde#a&; zyK~TJRiu5X+L3|aBh%hBdm&j^r7AyFT5WZfXW)@63>H|eNJ0gQBkW0)jhQ>0jH&$xG5INVoCm59Z7i^M;ll2$Jt>3_g3~` z7E23*Ay=2mt$i_$-ltcl1EAHZ(o3^at2ESlxmkl+fm^35b6sUW`w%YtlNMR{m7J_} zppWqz9_SEgxP9ayq;qD9!cJsncAz#up5+WEUO|j$xC=h^y z#IjIAlVrMB`hp8IKfyVI2j?l)e4W83)JCH=)=;DPyujcggKcUQSafnQVeq+2@fPhr zH$93|WKhTuwtNP&kh*3foc zipPlI3JtnwmszOo6(}yS;h4tA?WOpeAcaoIM6)T@FkQcIGjK%R^evs*k4&bY#nk7( zN})mFM5mD^Viu~O(&3=-T$`N$n-)6^%{h+H#@YzY+B0de z*X?wwO@)yLwPx}tz130S=?_}v{w3)Og5;g&Qb*~Q>uR<6JdQrOWZ)yvutqpl$6%{e z)#spk5^b}%B?zDo?!73#glBL?tw?gaUIvkHdnN_4Am8p%1<;m3E`D}&2+x1=z_X8z zzx-n#f0=ZUhbeSqK%pd@RU#;*CeV`iI@Kyf`-*q{0iS3cUO~QXI-txjsAuHx`J%X` zi(*dQ?myJjg05|;T5elZiw}#rEu`f)4RI5)0OGD9b%?T<({_nElA3#Q^zl`7WIDPP z8X&LUZM42tYmK(rE-Ro9cNkOKJvS{&<2@@Jm=5L#wwHzf3N*_? zAjdwOE>f;4-8RkJFG`T0_gNXYS1-$O*%pc5f}g3%es2PL%g&0M#hKJzse^f|O|tay zci*J~(?S@N0||$RncpSH9J#LS)rq?O#Ou{(UE+FC>2$%*$1tMSTjh${l=c+~RIO5Nl8iz! z-x6jgkWRO$NU*A;ChlJrwnUnff_-o)?BP-P=xCT(+ee1$YnlAkdgkcG@ozIp6(z3T zzfwiX$>4FfCN=k46}8)`1C8GggTTWjo(HKy%BJrcTtD#%(Z~UjBlQk$m!DSP@IX!) zi^MV9QiOb^td!Mhw{z*9<)+sa4>ce0uw4h9cFLm(IZEScZ;2mi3B&7#X?0A!Onasn zP6UwMT6M2mDL;b>&_hGxz5#a0jdAeLw-y$@XA>c%R=QMuGp5rz{MiP7K2EPq|7%95 zCw7Oq)T`^7KAgJ*mk8jrodW!tVA?f(aQWcib>)D1kK8fxQ>m@i>aEA+dOSRfKB_$K z%IRK2aJf=}a~#y%XUQ7@PYZ^-S5Abn`>@Kg$;m7$9RM zS3Q&XuhA_ZVVgWe-*)@`WH1PQM|a`b(u{7ylfe(Z?-kGHwort9WclKCS2OHIw@k+i z1Dw3>dAC1%ho$1cj}OjQ78VTD&&Gad44xfrh=A9D&bMZ6(j@g{u5l&|=veDgQt zo4*O)e9AZfrhE%Gc74qmpfzEm0HHvW zg|>s!zG7j0o%KK-4~N1rI67SY_SF~PzDkK-6eoB%POKgzq#hh^WUdYoR}YTYGccEg z%mB5Eh#3fZd?jS=`jF!FA;p`76t54NzdmICCL#0Jhb&wlvhaU|B=vE#Y9JndqG}+n z-jwuDR1H5m+JFsQk$e1QkCx9o;NqI#lFulsE1A)Oo|D`%hyOP7MAjXUo$!#+932tS#r+S21>Kyv8~^|jg_SG- literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_056/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_056/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ee4feb0e166cf8f3b3388d2c9b5e0728f2f848e8 GIT binary patch literal 305 zcmV-10nYv(iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{#!xu=GBw17m<){rkW-HNYcH?f)9{md>x<2hp=6=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>f3n?r@L=sc$f^-mcMgF1!k_UFYm5zaO|o-+z@Rm_W=L^ D7{8cQ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_056/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_056/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b0243fbcb45c3136039f730505ac38aff439b0fd GIT binary patch literal 1292 zcmV+n1@rnJiwFpU%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}wMYH2qME5D%yD zl1O21FS*_&AcQKRqKXn8iuwSmEbs2@**UMh*xtLOs1m$XRPr0<0sa`?`L7u7?tKsm zDH40q?b>6{{AT7iGe6(_oo&2VKkg&R%gYj?l9wR3gb3s)yrjy&cz5#*-~Km$@QZ)r z_uVRyv;glmXf8P^wMxC)B#eWmI%SvMeeh%^AeL!WjTmVRcz1*F%)6cW&4|X2PrO@C zr~#63?cGY`-K|u~oR4a2YeJ0>OtaXTDm~7Hni2sM5D4wr+0$>m+o~)V=E~+BE-mPs zrf~H%sw7sCoC}1snp0u$y&ZND0;E=H^kS#WQ~}*{0lCsPL6G5q;ji)RdT(%i(vRa9 zJrBEDS!!{ArSB`Z0T+-WASG+e+o=W=5)CElK@e6~!Cb1TVOdp_jo%;t+gw*tT^gcF zkYtt?OvM(%OQZnH6vlDG@&b&dMd{sxbCsY+k{bpY2?AB2wUx(sX$(*jF3ZZAg}=K( zrBskwVagyK&!OEbs4a!Ef+r-Q=@=y1y76Q*!pxMS!ffEja|A>Y_ahC3ng9u0nTL8`)(U;V+C8r+Eu2ym^ z)l`xRXcJPti0@Q$OgplC0+PyfiE4LCs=x2y*RKaWNu-+(Nek1LP;JH(H71cLP!K;OYjWRCIn2wj}^!i8Nbp) z)|;v*LWXEr)_I?4Tx~e=2FYL7)r4X}t@V!L(*c%&L6c-&Z{F>-9c8{{qEMpTUPeRpNa4QluF(dTHoJ>W3$!4EmoJZ^n$2y?+gifo z-HYpJ4_LeHwQhzSoj|tGPD1bQE=+V0ed{JRiTLpV^E&g^yU(s|5V?wtg^F%w;S|{>!H8mvcX#~&%&}%T|52q zI!^!BjO>y&nm8#5hO@ggWjC;)=upSCO>-$zyeh*)dgnHS%&1CZ`JK59Y&yDbK)Bdl zYBx4>=p@DWz<6d%-4u&wG zw3iHfDUI`((&RLS{^=l0jh*^DPRTZZ4NFF@lO6SwG(H{f6m5lJzz*BK!$o}(+$JC%4G%@{_9DVME?Nf<}` CLxxfS literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_056/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_056/afni_proc/_report/report.rst new file mode 100644 index 00000000..45a01cb8 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_056/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a058 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 056 + diff --git a/Afni_proc_through_nipype/_subject_id_056/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_056/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..67037bd998a8da60d93b6a73ac6c2c5f3e31284f GIT binary patch literal 2894 zcmV-U3$gSciwFpU%z9-4|8iw>b!>EBVP?7if9PxfK;QdUdS;j08A`Sz6o~*~znM96=A1KUX1*EzZuKvJ_;4lpi#~Qt z@61EI=>*6hYC6LFK*NZ~q35}N5J$Hgi*@sg*mRw^et%`I z?nb63jy5i<4g=FNgEM~WYn}(4<7oXTbo78I`Ewkt`Joe-Hj2k9(X|KAFs7rusZWhK zIu^#Rjf58#8iI8L!O?sVtFDI})iXV0nGV82W$2iy=exQZjD0s8jn&i=LB-+V1=0i6 zG*oe?Bxnmku)_#_EwQ8i`9J^m?LYqdpKqfzmQv2t5e(?UQO;?(-Xj;ypR zEvWg47YuS@K`KB)o;Q6HYy1#~x>N7hWaX$KKU6z?rQ28H=-PAiOtj_{8~2W!=a(t&{AO7s$Kj^?;=^k(-- zHICj{&L%LV*{P>auhYu+NZb}vI3J1*affYHo_3+{+EhEUGzZf4+GC~JcmN?x-7*KI zqVQFaEARzUfX?z$S*f+EYVD+UsCFA*)3v;`BbA7=Bz~PuW$Y&P zJ7r@521eSnFXqcSgIzztd4la!?e2atU&i6V9E=VM;(oDE)-^IjFinb5*#%G}00)U= zv5aO(cd2}r4>Ui)d4fmh8P>T7PbO z6lchwkTKZu8O%beni=sNVnIh|3WIZr!Bl1$OH5~K7aC;P_v{S6U_v})Fk&!fu+LzP zaRm+$YQIa}(mj(FnCLM9(KTw?)TE~2Da8hZ5jNM}O(UlN z!1gli4Qz@>4E87vMp}kvjQot1Ve|v01<#>I;K>p`r?xUeo<5`X?u262wNAOGM(`j*+V7@69&_uYnndaCIN>T99m4hUDPNx4HlcUaLNdI1qM?^ z?r4-@pNdbl2_r)5T`$C00eiCy&#*UK6n+ak@BTfpeD{+D07iM5Vb?M!_RUdN@H9Wj z3O;&~VLbIR9M}{a-svc3m^fIjVFw8H;j#p&aL{zA%yxiHi*1JDl8sQt+62wZb82wd z@AYbJg`o!Zc5;+n@2PP516R3ofwcl5dF!~*Q~H&rT5BK2(MJ~qd<3l22vcGVvPw-o z2G)~so7G)W1b%S)N#!Y=!Bw@|kh{$akc1m^Dv$&Ec8fBAt_*bXU^QrTV1tVQGg%rGorS8Zd#Tmcvd(v9W0D&F9-kRGBB2)9iQO<**RzmG|NIj z$KFewlxs@AOXK#VG6d*dmc|`6D>6*mDj{6(Nm=$gGvHfxPTDEWsrGsk#5-LQr4PRT zIwP1C!kFAecs%BQk=$_PrgGRM?DnIVv)e$o2)$h;L~Ds;{q*9b)OyEo5rCMM^L&1f z+&vgCpa{2*<}vX8H^8HJXbLpi4It<1X$BO51it-PQ5!84=ybnHIDg8cf6U}0+z~ph zF7&#+$tL3#q{v4PdoOtxX~d!F)rU z-#~i(w$cEvlAO46k=PPyP7?N47lwWIJiPyW%xxYa!}T?;u)D=QfAZzexg?7cRqtNP zqU2`qpkHsak2+Pg-)n*yzZ?gFhs%NhRE4C?&^7pBq7z0VcSD}!JE&cIRE5g}xoNBt z#jvD^@zsh_QPXPY!kXpNdBtPRM*?iufv24cXhv?)IIS%U6D_guRn0UzQY~psis428 z(XH1G`_;;0$N)VwH2y2FE?F2Se}7|Tu;;p#U~8tuT<31Vi0O4by{xXM zOSS$5EKwEK-FHlwV0vf47*3@yS|7VOa5Un^E1n3(*T?J8x(CS)%3#}(nx+%ZawUF; zCvPdD$Pe|xE(IvhB2i=mKc{gA97fiVSD~zCDmLe>TZt(B z`}J%7ei&EguY$tjRgm#0Uz8G$mQ7DAcEbQ18_u5()iE$13vJ%LtNA0$`t)6{e2N3| z67|_)$RZQMxwCYeV7&?l#=z7Ql0j3=3^up^KfR?iutY_goXJX@XJ(@K zbpiOE-IT;)DNU@*o=wj*$VB0-Y`p~jS!$X1lF9g<>=4tiWMf^n#l=b7p=vWRD`_J& zD$t1KT)$$D+qm*xabP4%*m)Ag;~3$5HDlzf{mlfmQ}cv(?h^vBVEe9|sni zAh;~O#n=-^@>R4GTZMTy;Jdy#K?c>Xl3zarIs`DxwYi&cT8cX*@}tPyTXONb>VV|J soZJ!(3}j%pP!xbGtigItCcPcqgm6!gqd7Vp!Qp`aA9eut1&$g30Q?A{uK)l5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_056/create_stimuli/_0x3b6c30cc71f9ad366c822496fb589718.json b/Afni_proc_through_nipype/_subject_id_056/create_stimuli/_0x3b6c30cc71f9ad366c822496fb589718.json new file mode 100644 index 00000000..d2e81da9 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_056/create_stimuli/_0x3b6c30cc71f9ad366c822496fb589718.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "056" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_056/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_056/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..dfbc2328c8ead7ebd7f029c3ecf14e200de20d8b GIT binary patch literal 590 zcmV-U0TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01i4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DF+BN+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zcyM5j_&Akkr^tV4&Ru4ZvO1Mf*qnivCJ3Db2$U z+&GyCh9#1h_ndoq$hrLW%Afz zEkDVtdLA*HkX*0&f?!3ER5ZzAn(Jj0Q6jMLqvKqE{y1b5rGooNMS^Gj2o)%~zKm#) z>)WTNySTBrmFqs z*DIN#u{_gxgEB=#h<$R_8eAg9QAlIpH6P+w!uz`E1q#GhTtFzR^@t~=eh`z83*`Yx zV<71(uw86++gqJRqXFTYUcnUv1>`$txTF# zi?O1>KE*1U3hLfyYQ_ePA2Ku~LYgI?#R4`Hs1wv=k~T@i z?UctclCfE_AQRZiNYAxEFh|4CgUFB2A*K-FXU&FDky*J3c;O|}%L!-HEJV3+7Jz~m zlVFOT1lgE`3Gy-{%m>BKH9_?l|i z0hSK@rGaAyLctSL!wU@r^+Ag9kr8d2VJuXfzR=T1-h-$zjDUggptT{HWF7lcbL-FI1&=2E6>*->+~c ziK+l-A5&)DF_*H^>$%UTrnF|{+nR-MYs|NGQNHaN`L<`_+aB|6UzBfWM!ua{_;$v8 zJO9sjG{=k-gm-}Bt~sx&lm+DIk-)4^s*Q~fK>0k*5+=ue-A=7G?ZJf~nf*o&9PL+L zpM3TDWK4V{PVmsPR_m73dT+ydcgVO}@6{ZbYaktj)l=LT3!v{mou7(eWoLvp?g*>G|sG#3- zjM?(^Yir!xIeTQ8lgj!VJ?7Y2f1%bloI+W(_H#WOa*o^4p`r8YX^>t%jhhhyXYaG`D*=RH$wmWqwK@m~{sy#WX z@DPFuuIsklR-So!jrJKA1d$`3q_&WHtFIM>zP+umnwZQV2`7ocE+t^#ZY{n$d1eBh8dI<_{VT*5QtWA~LMKKMb-#7yXDY#Z- zt#kra?n-gfL0I&qY2Sstf(|KMyo_1qB~&R>UBA@}a34!h-^-tT_s?JE`CBg{W`i_b zm+ch`%4JjDJ8iG)w;R6yuo-USpxy2ITdh`SyBm6&TiXwta2H;+_Hc(Q(`=S7is+j> o3L*mk!>IozClCW8BmlF~RSM#ox4O;0&oa;b54GbHSLzP{0GZ\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_056/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_056/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..337852fd9600278a9d3d0fccc1d3526eeb22eafc GIT binary patch literal 2848 zcmV+*3*Yn~iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIJT2%CuuSsj?&hWD*_})Q8ra2rbURxm|rG9TaKi`fWVT3gs)%$l2YPM z`VRp6B{O9Nm`AMmh+GRuF$5ul+rK9j`{q>InJRbe*{Ncwy%5 zM(QVyRxY{@1Jg2t6K?Elo(GfTXn8ku^nf_|K8}|B&VaoVAtav&G)eCddN{d(?gc&Ak0_#j;VUStE<7#cf-L@oigE79QKZo9;l|F z<~B;a?jtQgDu$S$Wda!^^tFUc?aS}({r87|4=T|TatwuViheKTghDniWb;KO_o!Uh zDCdjZW=Yu0Ka7dl$n;?*;d)JeD%R_9bc64i4iEVpLLOyNmZerxZB&|-n%Ie>FD+Ns zEIxG1N%=7!*dEVGJ7Si!`Mglv%øGq9-_}^*OTOCF0Gyn&Fh;-L-{WyB>sU#~q zt)|jx0gIdFz;S(KgdXJk_FlE7HpFIEZFj_7X)lhh!>En2uzE5}mcA0>XfdD5q+KHt(P_x&bD|P7!q;R?{ zvsWteUkBL&S0D|TEWeT!u~AjUJ#j~EOTg(`Uf2*yWU(ZFt&XI;ilg-l`Qz*`fO{*u zH;bi(!H}yTYTM0#nKYt@EYuQY2=D{$*{Wv;92W}%E1pSH-tFXUvo zD~p{ANm+c8iyL)WP3lsP_x^KzVZq1Sxw2ty=ki;HV%c&MP%7KQ?Od+xncKzOR-sVF zZqmO|HqJoLm=0~_@@1XDuAksM!S>Yc=2kIZ#^Lr147Llotzx09Ya~Q4PMSj51yCda z2Z?2|j3&u+q5OagG(W+4f(NH5)_k48N7P26Hr7z1__WC2A%ksd6j*d}Fk$eiOYtV{ zKQ%pyQ)E!c5Vm{o3cV$Tf? znE5^1OR?9pDIPG`qc|97DV{L)6V`_D512MQhmydfIebdFGDe<0q5bZNVs>qFs}>le zV~WR!;R+49XqQ>2?G-65vf-G<$nB;0>mY?r$V9U#)-YYaZ!>U2-SjP;+K)`8pT*SY zz)GP(;Y6pACSxPTCk!*4SuL{rOcq8Arb*W{eYQ;k4pZ2-n0~vcQEVD4HfiISG4cuw zrjFdfAjLj4A8RAVg!a2$h|>o4CMlj^uYcC~E9|^mk8nzd)r zV5i&Zh)so&2DN7LD81fM;pq=r<<2?j3WDUl7g9&*R_dzQd=W>Vo-^LyIuj2aAPI~vLN4XQ3cSJK`!1q*oWsodEnUx zhhO}qkH1Jd$ioymGN4cr&MFatsY8^-oVH8Uk<{FYqfaiXBh%5X z&;WV$exvo3T5Gh`c0~bwxW$;-?x|^68t+-*z;rM_u)Qq&CntiT0OR-s2guICP@q{B z0y*~4bdj>CblWs6_JUpj$-VE)t#OvboE^)o6bh_Z@6BtqJtx8pGO1p{#s#X!3B%_eb zcXG26NT=IWBv@5a6L-!FTO!R#!QMX?cK;xJd@#(c?jpnWwM=1iEpzbl@DG`!iV|0M zFH})-GI-LhNzL6>Rqb}_K;uutAn3?u?VP)3x#@MqL(NA#Y}bLO9rI{Hj?#GATjobv!tk;Y66+!i$ZH1o!{PNu^=WbuHf3Op7_r-GYeI#}vs~Ps9>!#y{ z0Zv}`yx*U_!%}hJ$9t#C3kwG7XXf87seRKztFsqS>ls4}G!-bWm2YO?@AH{;CST3W zCS=Hj%yiha$rh3E$Qd7J;Gbt?l7YVO+8Gyfq#Dkwj$G3rHm-M+*cg2k$|RrJhFPGg zG(*+#Xcb0R&q%CiR)ARco7X&92|vYZpyA_eqo$DA*<4;lBjf~_3-D-#BbQPO=yGOY zZ4DsuwpR{l&ssS;)A) literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_057/afni_proc/_0x9c05bb27deb8f33f64413d4465ea4ef8.json b/Afni_proc_through_nipype/_subject_id_057/afni_proc/_0x9c05bb27deb8f33f64413d4465ea4ef8.json new file mode 100644 index 00000000..da157b5b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_057/afni_proc/_0x9c05bb27deb8f33f64413d4465ea4ef8.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "057" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_057/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_057/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9c696abb33acfc203ac93185cd0b515ec6d5b348 GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{#{VKdG#dhMI>aKsbP1}zs>${83O;)wqO6v18D0W-PR1M(QiR8C`x3OILJbTg#vSJp)NwUZAj6bvl zyb{n;{Sqr`jU(ECB8D3fT!GsY@hEzrlH4s8S5?cc^8(f&VmRB&6T{1t>qAzYY?y)N zYhdGbLR-c0h`@dN^kxi4_3b={)7`f*JWK{^%ip=80y9_Fm-Fiz9J}fd#!rIk_W=L^ Dt#Fxl literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_057/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_057/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ea17f980f9d93a0bb06a9bf9cab37fba0b5d8a6b GIT binary patch literal 1294 zcmV+p1@ZbHiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpG-D~*vvXd1vAuUmQ6zY&sN^@y1NRwoA)}xw3hOOA9)q z30ysmDv4Dj;{qYAWmFh^?}S~10Etx^y|~?GDu?!&fJ|u{Bgk;T@HcpNqdVxG^gEpn zdLDMQvee@KO5c}m6V4$)KuT7acM=UKBpM3TgCMLfgSkXg!_qP@YQI1Jx4E{Yx-di) zAjvE(n2K$Nmq-qlDU9Q$Y_ahCtng9u0nTLK~)(HGRRC8r+Eu9k8v z)l`xRXcJPti0@Q$OgplC0+PyPiE4KXs%no}ZH`<>=x2-A-Up$lStst)+BZxsp62qA8qpgb)izm*5$sO$eBVA4`x4GJd6t ztT$zzhYZo8sPaD3xK?xI63JiH)r4X}t#^+)j|W%=22GNAy?M9Sbd>p)i9(5Tdl5}_ zP#s*}cv{M&a&X>TZZ<4suiV|4^jX+?Q9!adb}MUS#8~9uUnyiQ%-w#X5WGweTN+F$ ztO>C_Y?(4XLs}lT0AFgTnb$z?Q#Mu44FO`J7gDs3>bKSdduh9mUHrtC$3p6K#moJZ^ip@>S+g`%s z-HYpJ4_MpHwRVaeoj|(KPD1Z)FHE!%ed8uJiO%s5^E&g^yU(s|5V?wtg^G4+I-TyY z*GI+o2(cQ;Ze|201PMHddeMt=E(={?x68(?~W}o}znhn~ap5_0V5&S>vsir(s#EuAF{( z9jE_mMz%>4O`Mbj!`WV%vYXgYbg1LXrn!&_UX@`Yy>nYZW>l%M{7&5_HXU6xAYAM& zwVS%3pzn9C*g@}a)uC&YpzE3Y{(rd=IB10({p|5D z?w>$E_HXgW1k3S1Wq|*Tar{4H(PS*JT|215m9bLvslL E01Wwm(*OVf literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_057/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_057/afni_proc/_report/report.rst new file mode 100644 index 00000000..5ab467a0 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_057/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a036 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 057 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 057 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072067 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_057/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_057/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_057/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0b072cb8bbec48cebc655221ef58daef4e9a94fc GIT binary patch literal 2547 zcmVb!>EBVP-`Wf58GIr6!&BvNN~~ zde@6SK`#0LeUD!C4f+DT=~=;^}qi3$y)xGUiV3O z6k>_^F^)#a##9<2iY1zaVGzYxdR05=>0_F>arQ%Y>(ANu+0As*n&OC(z|UIu)|Tcj zt?Xp!jq|3Hn7AZ9l4cPKLl~T;oBN4x$IQqNS-KG=eoQ=^P1e#2_n~9LXM5M4Iazuj zPXZ6iFI_wW?}oCEqL5lahsp*>ZzbiGt87MY}Ln4Lx&B%g%w zuuv>3W#}kLBq9_^Bbe%1YoHqDzGghIx&yN}FthZ+bNsC6W$6_IgpGmuz%sgf53}?O z8CF(KD30W6t$4RulV9PZi1=ffvIK4H8~S6g1BnKuNM2-TMBO}z@H-<+?ebx}+tl_o zwQqof_lUPkh6xL-sTvQ>ZqHig8T`ltg8hAZ z(Yvih(3@QNG0WS@5-z9WQ(O~!%_lt=yD>vYF7lyVFFZ1J?LMS%5f&L%EAqE-p)8eI z0|pyU3{!14E%i{{vw9l%bfKhdD^(UO%U`#znNPCx_PP8?UJ}E$DjY87LP=sKqNMG1g7I#-xKko(S0EO0mla$8!N62OQV9{FsCsuaLu`;IJDB zScKfPFyk@gg3m5AhR2G4xz1^<2!pv_c(}q*=&kTeA;mKRV*yhEM*>DdC~$~y{{tSD z9TMIUvL__OM%=X-;jYmc$Buw8b@;SXGFp}<#1f7LjCsQod%RO!V`2Qz3s*QCdK`}h z9C93w(F)H6{kf87kt@i(3gVbJA||}?N>B>R0_KK-@py$Ju0BIk zL50hMFrljk4d*L7r{U9Fg&=5uzwwH6r|Sh3PC@ z;n?HY315v14x#aBi8w)Gk4|eafsbdW+TsBCXo=m>Jmn*_DVpMCdr1xU2K~O;F$HSS z>f}f1#l8inKX8?6XILu`lJ^d@zBy>O49lPria=$fi^0IVnHHtV%w z5%|H?$Bid&1~;vyX7uz1kc3N1Do_CWc7-#5o&j|6`txUS{<8zmd;a3<-;e0mxquy} zAlL$ilKX5iLaBAYEn}~*sxaF(auAK>oa@LYjy&Q6GoyBdu`idaO3hZ3l67}<2U!&x z)htxHt60@L)lv)eP zS-pk{{BTE5^@3yKx=0S)WK4W2kG-$}|Lig_QJ|k5(HMIL=!%i+VxVImFM>2wbI{{? z`$ZiR^r1-O_Vk7U%eKx47yK+(_6Kv|TV6rgt}dzerVi@e9?Q~a-+i|tm@cN2-9;oi z+4@a>!!dMoPiO4*^VhT6*mfDcU1vn=6v_JK*+o(N2XGO9oYqTH=?<*(h7bib;r5{) z0PlYXBKm-rfY#A~oNq2FpaLZD{YR#ywJo621D$dH1&{tns7bgZblW``b@irLjJKdv zu0cTUfo=j5*VRV@W_sQ155Uf6&|~S{M$_tO`=$o0)>JzzqmayZipv{Ff6y^Ch$^p% zYiEfqqvot&e|KiuXU~&+&nH_q_puX1XscYiwe|e*i(hZ$Rg|0h@LUz;H-r0wme$$t zHmyNl2RD8@iQ|ygWf`anE1OZ^NTb{)%*O79603JGyYa9Imj`y!SZ9V|OEKr04YOe_ z#QvE*D=pTQPEdqp_*};!dL`pIyG7H5v@TCk?%|udd37wTEF=pIHv-6ROWhkZ8;_s@ z?8HIRx8PmAF%JLs&f3~fd_-8O)z4Jl($hs9{%oB;pHHt%|7&`)ZwPD%&x}L#=1E^zQwJo=uL@Pn-7##_C(daHH9TdmPl< z_54L3MDb+z+>J2b!t3pZ2K)chywYeG1g`8M;tJQfD=_2Yy1uxqZZ5WJ>nUte3-;ar zSumM|NAUzsr6k>)1T^*$3*!w>1e1%C&2%$_Vh3aJ*->=jC-Xv8+LqW`O0g)7>~c+- z->F*FN@4jkBk`m#hE=f@sSF3*Mi}8~{`m9dTRi?io+Ip#h`sX6v%jPlBTPMZh`t+) zMtNtPM7|xs+0scb!O0NCKk>vFOlI^dj-YB&PXu&-BsjMv%n$qNiWH>A^I_HakO`N3bP`ZAOU1 z*fBuL-!QK<9G_Sv8tZvZI_XE26*EP8@|0@97Q9fE%94^nrCo-VonjyPHfEJ4{SRfu JYhAe&002YZ6vO}k literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_0xfb31361957b77b916fbab80d8fec6def.json b/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_0xfb31361957b77b916fbab80d8fec6def.json new file mode 100644 index 00000000..c831cd7b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_0xfb31361957b77b916fbab80d8fec6def.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "057" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..24ef9a35f396970c8d88b6bd65f81dce44ae3bbd GIT binary patch literal 590 zcmV-U0TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iHt-%kwB^SM4*uABV;&? zjE0es2{IZ+#>2?i1Q`z_lVN1?A4okPX49ZMoM;+!t7D~4G!4&2noq;Ck>=CzB=X(_ zO8V3qQ-7;SeCU$H>BE(!H&xfKKYDGAuH?uCyUDtMl|U|7sC|j}?$`ZkI#!@dKBWNT zm`K~2Qi9ZyZMU!Y9oy~8;Ny9_J?nMa?H7MRYveC0q~P+}Cy+CdQHDsyFhdn4NccM4 cryS2Qft6o~APCRn#BUq#7DB(U4)_QF06r}oUjP6A literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..64a7ae3933533282869c585fdc1405213d33e788 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@Hf&l3vgb!yW|p zA@-Ka*E;QnVki)#D7Iw}?ZdFtASj8l7)zu|Qclt$!1hwC0N5qS|U9gY-g3rN8!usaLctB*XFYUuS|2?n$ znxE!Xy^I)6NUpE?f?!3ER5ZzAn(K8GQ6jMLqmx{J_Bdn|rGooNMS^Gj2o+IseG$B|!ldxn6Q}{i)AcNc%SKO3eEJt7u$3;$jfS{0PNlNMZo_bbs&1 zTyJEG#&V|f8fA)z5c_1-8eAg9QAlIJwH)GD!uyKp1qj4fTtF&U>k&^#{V*mW7s>;W z#z4|nV7uDvwjXpFjRvG|dIeXI6oBvKnO-Bu#0Nl}Syk#*=t#2<{I-AJ%XW3FQAArJcl!XVbg$NfI6Od4mf8u0Nw z0K$O#jvxsi5@c92E*~XRfj%!SGRBBcq{QL`0k#578S=J*&IpSDL81c`V1*@ojK^<5 zs~;0XDuM$90AuWpM>lOP&2l0r9t^@rI*4BZ-K63v;tVPyq(atif^23~5RtLT=#5O8 zRg1BrfIh`4no8=hBs9A_|ahMbsu?LE;w=u)O}r4m@{DYp1#EloK2?!6}AmVs@*O zVisWOz+W0Tb|4fyakz91A4XP(oHAp>(?e?$gb0|_bRNMh*Amv3!zzqcMZ zmDi_VzCIlTACVJ0^sLpE1+~@NcHSK_uC{tL2j-fP4nP}4bRcB!osiA>AzSl9wiXH5 znjf+~KV*B6knQ;)JM%+!{zpi|kHy$vJbWZJ7+2>7{gK%4!66rC!v}|4oDJ^{d4_?Y zpx<+hS$X=EHE!nxkj3&0wGOaLk9 zDpjrQaz@~g1sPO&1eM&lzXQT%1Si+uoI}>vjd>l!8YpWV*8|yTGaD(92z`57lX)+%Mqv~YeWjG#<9@yJth~Wt zy;A5HneXdM#tt-A^l~4P(i^DH)#&Q*8#D`)wz+Sbg;SgA!Ff`hcR#G7vW9R=L{P-~ z>@{-@#I!IP)&`a*%!m2R+{WJObu%V;CO~@b>opME!isNbY)(n-LQF&I*Jgr22`(2^ zE1iJK-6(E42#dZn?c1Kyob$h=wa_cBX|%JzY7``6u7mAJ6u_2vxHGZ-{esc n5%?cQ{Wm#*92g-1n2oMdkk_*1ZT{WU%ya(*VJ_gA>JI<_U5V*h literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_report/report.rst new file mode 100644 index 00000000..4f4293ae --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_057/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a036 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 057 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 057 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012327 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_057/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_057/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_057/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..025b9936c2603ee45127b1917b85595258d95458 GIT binary patch literal 2852 zcmV+<3)}P`iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq<`krq`YrbUY8m?CKcwB<+|3CNdBVF z9Me1X5NA38^81>OFxS&C;&AABt{=qF-TL`R2jS2P;veF*zs4`))o58AAs?Hr6W1Ot z%-r2d{lwAAW!GU~T4r#{jeX7YU~(KS?}m;Z5GOyx(UKoJfoY?7xDefV1Or1F?QMN* z#L)pibZx{RTc{80dc33g9#&lsIjU!R$TA&-`EuVeRnK>IH5mGCI2fu^CcKKn-Z9bx z)il)HMv>Qjqy8|DaarDmP zx~%N9no6eyEN+_v$MumBdXVqC`<0ryS8aCHcBi^q-;bl4FlwVLte(u0>t9#nXfdD5 ziu?&W^-X8MW0IhyUAgfb{6M0?$mgfo>0>KN zBK(d`Vs?9fuT`n<)~g*E2tG9JZL=4Wg;lEZ6Q$KwXL$x5$--cP)k9UV z1Sy;@%j^{-{+l2xaw2KKWch`xRQD=sb-%i!w(G#@Mqbzu3S_Y)f2~ekc@anJm-5Hi zVF345c7GO23xgrosFz#2LL9wMuS^F(t5cu{xOYwxUpRhKJf55ciIg|t*&EYf3l`-=43GH`B6tioa zTeZL#olrbR3|DB-MZ3&GZBL?DV#6_wk=sl0H$e)WkcnnftYNx--)7*5y6IawwI7*G zKZ~i)ft5mo!ii2JO~yuwPZ?%9vsz^LnJkPLOp~r@`fQs79Hy{uG5xlrQEVD4HfiI8 zG4ezPQ%CM#kYb;jkF^nFLi=4W#AyS2lN3*|*FSIk8Ft>S&0Oh=&(8tK%99kkmO-&^ z4$_9F`9a$7(Q%6L*h_I>Q*3xAgREiVV7`Y95bFJT3)11B@m!mo0Gk#&49z)?(8k&b z&Dt|*u+!~ys!fHF2DN7LD81QH;pq=r<=zG93WDUFXZ4QKEjQF^^I05ya>2kypka-0 zs*b@{sjAOF^(5M6v6#z&KDhh5`~sfA6}3{A+l?}agj+KykOld6hbn-!407?a!vlE! zlLwxCc=Y9;`uNMFgFH;3BLfO0;j9utS#JU@d8bpYLbR`V*B|hS*5MW8+ol7`41;<` z4lfpjqAmz|b+i9KQzcz1s#<(hYffbS=Hf-EcAmjO z0CHN&bNL5wotKzZKod?Mjc1_y-+~prM@yjItb;gTo>qVaBJka(idx@OK~8rYMDtH| z^ao5$!Wp5p*M?blSJ`4*gHpK%3)<^86j0)g>eDW9y{L4$;OAo)Q5&stMQzr1l{%{xA#z50`izqzWmUzH4y(#3w`}2Skq4JGfnX zQh~z*IcY2s$8bv#@|ChuR;S(0g?pBpURONSe8j_c9eCOak0#_OjiUu4UPK-*d;f{{@>qPSa{7QLQ1W4q55V_r*-&?4gPYR zUYY(^j8ISP4s)Sb*EM}OcL^>Kz-c=L_!YslEBfH_!NKd&0rf7qW8^3Gwpwen9+eyM z@HG0U@~A7PdlA9qN(IhwP;;LpZv;Fo7;axW5hl0r;$FE9_y0#prD4x?E#B5li#g8S zfr!)N`t-26JiS$GU&Ae`!hQE67mPQ((_jcsr7&6^x;St&vWzQU5e#n*m!oA5iXEK6 zwj(r5C!Ayp+y+P9rQ~v4Ul)tqz;S}vv*i34*YokYf`8+aDXo02z#kJDy4E%jQ zv(Drznc0L4nUI+dn>N`ZG9EeO;|%=sj7&1n_gy>VVvbb9xz(|2I>g5HjuRWBuR@vR zGuto=G?iwkIv%aU=;}F%^~?$o%YOTkCoAEnSPe9MlHIE*WOg=}SJ4PL0pseZ@o#M~T(_gw*|`^~~iV;_Cj< zS_bBlkQtzM9x($Uk1mDGUma4oI;3!&kiyj=#j8V#*9j?J9a6eFr1XD;B=vE+JFsQkrDDfcnmfSE%R8REjRi6z#q?1ErnjVR<^a8~^|^ C%Z^O| literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_058/afni_proc/_0x09c1f3168e2d72b072ca0e01a947a58e.json b/Afni_proc_through_nipype/_subject_id_058/afni_proc/_0x09c1f3168e2d72b072ca0e01a947a58e.json new file mode 100644 index 00000000..99112c56 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_058/afni_proc/_0x09c1f3168e2d72b072ca0e01a947a58e.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "058" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_058/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_058/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..85c1c712948c450d991aefc076836ca539f17426 GIT binary patch literal 305 zcmV-10nYv(iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{ujlYS5LxTL_)TiYL@&XN%tZPK0uD~b$lWp!gkHlJ$6pRH}lQ!o3F#~-~GK!tz#Ze z+fFr}Yek&5G5j!Sk?mC8Xep^;C9>c;;T>VzmdJIBB{aT7jCwjq#r+KR#ih~K4`X9> z1I}&KwEc*(zB~I|XH~1Mq&`oBV!M@0)c}5-NPhcw8_Si?vnQ<}D`qhqC3_6d_(My; zO94IAFR-H4IHCdp6}TM{kD>=E$<2IzQMKGUFJJ{ChLfEhZ89p{6jls+6T z6dTgJz4Q6bZYd>DQbJSrAtetfL1=epPx5J{t)#uPQw;4(Xh3gOAKE{r@BObj+THu8 zp>AN=Ak z{k~fzlIGyu2F)ZVg;t4on}l)DR444hyAPhs1jI6}$`K>A0q<@Qo_e=4zuBfy_t?Aj zm>M7{*WRtPy}OktnekC&ZB3{Vf~glfQ>Dk5P*Wmc0s^5uJAL|{cUz_9!d%(B!=(kC z(FCrZMwP@Wl5v5MRx>ILzPH0JLV(07jb7|@n98AZCLmMV#t1STF#HXkUGEMKkNZ&+ zq32;&D@!fzuk?NCHsBl*1f*nzc{|a7LZYESJqW_;GMGy=H7qUjqW1gaf1B$_stZF@ z0g}wpf~nYIc!}g-nZh`3Se}EiG%vh+aHeAPNOHpLS@^pv zR6+%*6ebLk@f_N{oZ3PtD|k#|nv6lBts759Bg{-8O3Vg+JV!tjaX-?Ks|k?6m3jC$ zEE)Q+IZ;Xp2^d551wm{zn#SZqi<^w?F5RtS z8PZ8Gcql|kF&1yUyKk&2h>{o?Z7iwIEs$N2YS5)zNbi*}n~; zQcWe9fHooJi}+48$Fw8MCm^XzmZ)~Opc+dE*@0)x+-g|LUb(w7>9er)qJU&^>~_}3h_T4Qzf#Crn7jQ%A$XZSZfP*3 zuqMRzam$qP8Pf7`E6^%z9elRg!iVRfB7-=zB4lQ@+noNQwTEAy{&cz5t~s^e2o7ea znoI3q_=js+eqG-#Ffn$2?<*x??_d+-*j)GS+iSFerOnP_(*n)O;N{C+yJB+bnqj&Ch-RG(iW&CTu&oai?857{P zo31mLx$P$@&Y`Zc&#Pcjw^mca_)~W?oJO*-@)X^3TV$l{tcU)J%NlRBJPpfQb>;NS z>p1;iGqOXPXyT+K7|zbpl-7CmQGNVe3<#*~fu<7Wk0pVhI zsom5K1%1DB#SVIZyAEBW1YOVE_y5b4(2-3;rE1!mcGZ?y_SPG>RnHPa^~i+2@(>G& zOgWCW0HTa@Zf)pa@7x+ryqt_;|Mi!D{}G-)-8zw#$q(Xf}$2%;`M=@04AF&^2e&f}D9@>jED\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_058/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_058/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ba5babc37c14f3f1175d75572449ad50ca2e9d20 GIT binary patch literal 2544 zcmVb!>EBVP*s zyaP#93t53pwjB)|^wFqP{=kC;K|TV^y4{dhDs=bp$WjR&u=6`8~~^IO|8 zI#UEc>^MZ3AI)$6<^AWM(%_?H9ecLH+(~{@%oj_!LNQk;8~L4DX{)xiBkdHbl|m(D zY7-K|Nap66{#enpG`S`Zh$llT$B;r@(RH=cHe2;}y{Yul<5&D)hQI2hp=py85k>CaZ;fKF=f_-DuZaAo)0m2DyBx zSb~m%L_$K5G=!;cH~Wfi9H{zZv(q=aeIrfQUg8&dH%)HpAguR|$EM!df08Dj%doO? zOmQezs`;HtRX)ZiA@N2sWeHk8(6wh^2NDfRp*+vdkUCis;de@y+V!JWr=cFGN>2v| z9};(u3}O~oL(!iYovyjaGx(7O1_3G!)#yONZ)SFxH4k}ynq28VYoy5s=c@@E(K^j} z&>LL%5zE`z5-z6VQ`{DNjptn$yFNuH4)UN}*Pa@h`Up}u4~q;cW%+fKD@i5RfWi86 z-B4N$Q#n%h&8`YQtrdz}#R?0S<*(CIjpu3d;8Ol1H;!Oi<&G9}p*R{#np*E16w~Am zUzr|&PEX-Wv(ap{Os(E-Lao5A>FZM8ILK|o!awe?z%S)wqpvHyOG#OMlZk7ZZf13< zr$_(2y0Q||y?o6kd-=j{sa$is3{-0FcrTx?1!S+B-z}AD)X(HwHTw(7GR`W#oe{FDS7FOkim;II=4ScKfP zFykrYg3m5A2B$>u910i-p}--+{r7oTRzP?| z$exf83vt(`gu6zk9NPlM)aKJp$Z%1b5KAx;Fy;+c>~YU^jfC+7H(26e;Bq_?aKLdi zLQ6ao^k<@uU>`7V1Ri&SPR`*|?yH~_STip7Cmf5hor}6CC>?V=#e%QU;6eLBpl(p+ zxGYX5G$#IFiC;%c=*7ZpF2{)S_(NBK6K-bcSX_TX1i6U0&5^T&Hit8d&orCbOMD`D zW(m<^cPM0GB4D0$gsjD95^%hPLr0LiWyCSDMND|(SWpT|0_KMN(P)W7u0BN*L50ix zAg0R(4Q5L`qrvd3@n`t*?(XDkUwwH7fKeVVvG3R%hh(&D1SpJ_jS#aRhCmIP?d&MM z+B4zw2d;Aa0&4|A^8TUPGx~MSRN9AW^4SH25Cbc<<2f+~T|+Ssf%RnEX0@8n13$R+ zto|I%;D*^y^{!S2l5lN71#&>&ZgK|D)qyU4@$v?&a$+0k)s0r?TeI2fn%%kq z{BT!Lb^TM~I7kkhctkuZkK7;!|Lig_ExOYyUK{xIg<73i;JT44&fpIIjt3>!Zxh)x)234;r5{&0`Gqh zBKm-rfZA4poNvr4pbRAN##6&oTPD!yzQ#EJoJW5s)Fj*yI;}2@x^+)1#`{nzw;`Zb zUo(J-Ys%9;Grel``e5f%=rOfUy=ZTP#j{*R+LG8?NO zVeVPJ>%vj|U^C1f&8P`3J=k14KRwvAQG}T2e(m}u{1KOZ23R+HjDqtclPO^!^U*;_yy)KDhVS9K_pd{si{WX~dY6|rE|j@2 z!pJo%hlfRJNJ1Jpc!J@ue_!w?P4suM&U}>@!{B=zk_ooCb(6i`$$Sd$cMYN1Kyz7LF@MSE=rclh)Qdx#tU-#oETlD1fw>_8!*kWgB;{>(@v5XLr2-`YH z`5WfVy6q9OKqD>7Njv$_G$W=+&z@3E*n(>nsU#IssI=>_vJ>nf&%&(or2hfCYRlre G6#xL3Rqm_+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_0x01e5b8dd24756ed0c0fe3629cc71eb3c.json b/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_0x01e5b8dd24756ed0c0fe3629cc71eb3c.json new file mode 100644 index 00000000..998f5ce5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_0x01e5b8dd24756ed0c0fe3629cc71eb3c.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "058" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c6887b49086b64b02c8b7180749a8515e21adf03 GIT binary patch literal 590 zcmV-U02DWFHtUCP(TT@0(0l{ zE1=GseKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;`{jG>!q$92VsU*h)Cf{v9i39@*2v& zud}~6j=CZ?v96@$+=K6LvzbMSK+;msImASNS5ycqO})!oC6S?TWa1kge4}H1V?*EA z#5X?p#>e_5hQ5i3Z*uTW{_We>=*UiZsvOTbtdWgLfqqOlBy(g3ZlX{*t(uyM!?O>G zrs2s*^J#c8(tH{oMc$b} zNgrEd>TeZ^cU^Kgy}z>brt13jN3X5Xl^nTXH(BSf637J$wJ#Ch{kl6%#|m`Grxaiu z6KPvhN|0Kz?e^uqW4nDGy#Lg0&w8D9`^8_-8u`l#DY(4$3FJ&qpZEv>0O52V@Bjb+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f13323cf27026d21383bdc97fbad8735cfaae1d8 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#*QUAkl3vgb!yW_| zL+mY;=hxTDuY7mrkY%!Kdm86`cMS$(4SOL9Fd)WTbe#QRE4k_7A zQe;i%3PB{2hv)mw;Ya%Lmy3V=bM2gc^3OR-4^nVbmO{)pxWEVI#YG6J$S-c=yZF6m z{8}6q^?Z(Snn00X4J1$vL}`{}F)Q*V5;2fe2GK#0fBLx38A+uGh>oPl1`#Pyiu?j$ zVUgcFKHa5W>p_t(_*4N2nJn`2ZjoOK1n;wf#hs7E0BMztt9wEY`?1&~F^nKal25m{ zek}6kOtV;>=)A_b2HB?poU}%lL<`bqG4h)0(^%pAis?lP5NIJWl&j51B+%TAp)aKN zk)$zD>=oKBv^F{qx}N7@_@-A1jX@##Zjt4Sunz$e65MjWQbjBwML$SF%gn$9lBy`o zlC+Hb?s2##r!rMUq`=8|fpAflBb-DM(2>AoE@BcvX_}-(ers3w7!hYGf{>U2ks;do zb(}N=ND1R0@vN=(EZq;~WA|ipm3m+)6eTj#AISD2Y2XQ1F#;;IrN{f^Tj+v246KgkRc4Ab5%=mQlMyAZF z#Z)t7pHdwi3F^*xYQ~3L>~S&zsmzj3^SdV*E<5gp5pc?bBT~DbQi+=h)ro2{Nt-6( zW-8*CsMxGnm`Q47l%H>-VD?9SA0yupR_!qBC~Q+@X||`FC~IAvk=wBnMVqK z4B-)a3T0ywCgEiUJV3>tZ=vc{mLz6{Xqwt}AA6iDHFAjJxBF^DaYN0w+TOzr+y)9E z$z;D3d96BICSA%kTa@VocTXDECgg>!j0ZNr$tiQGQfc&aetkUp)O0;dA()z7?pI@Y zj>zJtR}1IPh0u47pDlKO*Hz~4q9)fIqbZZ?#@9;@K6fi?r?u%+6C5+aDTi5NcB_+8 z9#ZAtUm7}gpf5$@2;~|*jIDMBmd4#iEE7(Ad>Nr{-lUQ?VNbKJ0 z!={O(S$-1~{qWuoPoA6E_q-OtQ;TcmYBj34rLd>rR3D87enR@F_CnVhC%~((ot>KC z3Um!Y2b6L1j)hXSUeA4gWJ-HRzU^7~wkLesXXV?Ok#A=fzMTo*&RO|(XXM+Rg>QGl zxBK6G$8*d`Nq7@EZkh9{&Ugs>k0j*-sC#Q&gbGBQC0tGVHoA?*Q4cQu$n1DMbhJ}@ zefZ_;!wK=RIMGATTCG}AtGzYn-67*@wbyWPu7Pxr+8EJ6$lg1UtatfW7Z8a^0ub~Su3!4 zW6YMPUs>bU=E)<=oK)7|_%X-U>I=QP=9J3XGKI>T6XAIYvTPk!(^&~vlRUWZQ_SVgHW=yBZzd1u$-!$e;EY`5Hrg1Y=p4YnH={B(hB}7ZC_SCq- zBLpkB4Y%XAi_Fhg*nkTO1oi_+Z6WnGzg!mj_O_;qUQv(wQ3Uyws^p&Z=kw318ywB& z%Q{9C+xbOfhc#C8avOunm&rir@zvosY?dr-bK5jar#94`vxIuu{jf=@9O5mJU=o`r zubGQjOiNS4T3~g+1DwyzZR~BnWX6=pB$l4r`63qF(iY#?SUFN^m&G)Oe(eMprr>g! zwaN)rxy$8Ehfq0CrhOat3fW_L@iJzapD?XWb^SJ<$NN}927dA6+rR%b&tLfh;WkLa zb;(|_uv|9fz2miD-G2~qBRw{V)jbx4`cNSbq>`f7c n5#axRGJI<_3TgLP literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_report/report.rst new file mode 100644 index 00000000..3984d89b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_058/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a018 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 058 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 058 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012335 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_058/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_058/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_058/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9092b05fc77f35197e68913633c8ac44328a6ee1 GIT binary patch literal 2850 zcmV+-3*Gb|iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0n>3jWM{a8=6#){2D4D7f(;`J<%r6t5El1K|KwwEi!dI{WNhxus z{h1m33;M5*(CJh3J^BcJh28}z>{7B4r%E*T@a*p0d(U26EY1RdUHtpMK3z!uqR$-D zJM|D}Isx+gnvO8n(=g(2=y|Rm#L->pe58YLXa({2@!H?wSMh4Jtd5Y6P1lKQj}~U` zZl!+WXyvl&Ffc7MIOWE^=6NtVj+XaAM-PaT@8f9651qiYQ9N9TZajv8A&vI7J~ra$ zfFHUx;*TxV2X;N)(R>f9u7@1eGd*OP4#Ir7@0hCRySf?-eK#Bo)hQER#bNIl>49n* zYHnkT*L|b~NW~B{v`iplgua%LseSp~?r;D3@Be-mEg{EH2&d?GLQW`T^FlT+D!GTH z!bT}Ca`|GuCI=0UA5h*?n(P`bQ4Bxl!eukS+ew1HI5eZxm=F) zv}C1OZa~kky`Y!P6@&r|)H zt?d3RmKFv>t}c~Zdr*<@(<{>f(CSp_rCF|38fv}VtU;~7t<#mcuCkZif(!qoMHYT3 zC(B*A+PRdJ#n-vGRhQMIF6DUtKQ|W^e7ut@8Rkwdzg-YZmXm;D$sX?HawX5)5p&yx zLJ7M`|3=9;2R&mtw4KYBbOyVAg7XC1Q@5MjV!njKof#PH6mr{Qp`>dhL@-X8LdgXn z5`crmQY@iKGF>Qr&IOvE;5@;DvlMH-&fsHeqfr}cs8M_-GI+>fn;Hccog7RUeCATT zN&C-CkKz;=6f%S@pTR7ou9=8ukP8}}Y4pwn22-1PEHINPFVsu1@7XCnW>P$6Fk&!f zu+LzPSqeN!D1VnOOZQCLV6w*~MAs;_u}P`nF~tUh5jJSpk=dV>CalF9Fc{H>&5qb} zLjz`h&-PO6^=yg<4E87v23m?IjQxbQVf+K84bPz@@MsR7QLc=Ur%!0VJEE9f+uW)J z#^{9NF=DtvgD%=-7HWGU#UdMyX^h-nioXt0=!8r(n_>;q_4_shN7PN<(y9H(Wcpc5 zeGaS?8Wc`+8fh{%QhdrV)0x#GyU%1{#9*3qP19%FB;YWGeT(V0MU7(9V6jOXCybF- zU@&#$4hAXqsrgtNF($O%^+KFBus2EZ1bhAS#$RCP-F}!WeSZHOfUG=8v1=I=`{p2R zc$y!i4Idq+7>~Ua2R6lqcQVKtCJyF%*Z`s4pSK_#4jRw3*$J>|vBS`u;|Oi6jnJ$; zlLoupPN&*b7->*zCXdpa9TlGbpjGZ&kggy|-gz!{ly14MR-4b`=#vWuJ^~GEgj014 zwn|lf4yq^7HjA6N9O#3)FUl|B8C+2-lH9JBK_uLoNr5cLw>wk;v}KTspB)~+^PfEM z?8Bok{@ll3Bpu{o3LP0xC<$kk2ui65wB+4RwF=R`TBPb2pAYzO0T+ zN4G))4)>mq+(N^1K1@z%IV`{r+re$foXN3dP!TiAXvhbgr2!;ZT<5L_UI}1aB zW?2a2*oV_a%2lP?rg{5S2@>=^E8}+SWf?BpA`x8hGgaB|O+atiSz)6%liJI5FmJU< zmOlRW+f-m$2xD>};qWl?hvb+e*OlEmQMaGGUfl+|Mda-w5n6L1>o*rKO11MG4g!$V zQl86i!F66@Rsl^oebk?W?tcqb^d2n%sVRXtU!GQg2qN&^XNoE{RFKo%I??=79sL1Q zlW<08HQF%i?kZc1YfvipU_p&;T>&LtuRiM%*NaN03w}O^5w+ebSJbAor%0e`m1>h@ z6q5N?Zgv9cbeoC=kSe5X`mVwC6Q2-`91uBD@8EXnX$1}s zL|yJerWBG@kaB_>q<{ylR+M$JEQT zXNuuO0NJfoce|DHGpGPPG&JsOV3*t&`~P@rVc`ch5mIWU3)MGcI<3QBZ19)k^xE{l zW`ufTcbE&kx~}QNxl3??08ZN}z^@6WUC{@Z4-Q_J4ybp@9V0)L+G?%ddR(r@!_(-a z%Hyt_?nMNbD-}4$LCt-Zybz!l&@x8(U~l)M4D{|0Y>AkRKB zOrN~!nZ(~kH+_U{@(_L7?e~+xAoLyGg=b4Mx&==LKlq_nJmN!P3-+X?^VeO?uovAl z9WM-U^1A2U{_Gu=iUU91KU-c{Fi<};|8`03n-*G~y?|QJ7+RpIKyj^fI|G0BXV#f~ zB{Q3lArmswVbdmCM8+d$e4K%Qo{>og`o3#tT+ESbIJY`>O^4XH-f?1M^i?R6d}aq` zfu_<7RmY=M7+pOlv7T80V%cwA@nj|Z6sv)TPqK}gLS|=kc@>S26JRdDqZN)^N-dzv znSr%6fXLffISf|TE(D*UgM$^n6|c!xybfP6L2MMVMN9&o(L&VjCqqPjo zB_T6F?L1-zLLOZTnZG)uaCJ!GIw6ItLl&+MS-4Kf!qp+gt3!(aM@Uj1*Q*BN;b*D_ z;_6LF|4h~JlS5v=8h&!f>sP~%hMcRw!2PjpjC@(be@cw=m5W;z*{KqL=YM3|dT)4Q71u$q$%0Oqc?7wW+t?yswPtk4 z$@vXFpAmDOyzxkm`343xw^uQRE7o5QE6N4YCs+GMb|!BD%Q$0hsUeVk*s-28g+ z`{wLfcQ&oPeO)#rmza`FNZx+?sX_%RLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zuYfvl_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iYn#JZA}a}U11&1M!Q0!d3j=MWS9T~Q&dH1#fTl|+WVk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^O}Jkj#-CxQRmLv}$T14$nR$ zj&r+%SJ8YHq^i-(T5sO2HwW>4I8}$V%Nli3qtpctL%P){b%3hXNTAeuB2dWm0Wus$ zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinuaGM&8OkXNb_lU6nSR? zC4Fp-slQbu-gU|0^#01yo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`L79V^f!pHhHv zOr&j1DM4zc?k8{Ml+I7MqI-B=EZnOWT7wZ!n^pb zX#7$f7j-?47*0u{R|7$?B1kHl<_RtIGKwh?SOoD=p+9{bF^V$51EgZX^L~sOSTA0lE@#w0{$faicV zcONDV2+0s-S+3+H-nE1WI6>B75R+gqrgkI6DoeOZsE>Rc3k}J|xJfW}H4srhq=HEON$3K%~Ut2m!Z}O$B*dL1&Cbh#=4b3bDcxKE~s> zpw&-^5f#B90)h$l$D?aDmu5K;Bo78*BpW2JKyFg;3~>gT5mF&*H(_>aR1lG~$>@z- znpI1%qQE}GDxM1J&S+}R28JCkc{?S+Ot|*vd%HwLvh4!^nro577ap5aA~+_(+yuPzlI!J^Giny1+Bge9 z!B0pyMNfikOu__tnG+U(;^$hRdYPxGSs|QdcHKuF=Sz(ogZS;f8e-T`3$3=dwF%om z0wfymw?fydvt`^RU9&~0I&u$$acx3g+{syB100_+mn)UVKk4hE(Wj>CSw@11*_Ego zgL6a_KfYSLa3Lg-bMkDl`@1f4e;+it;TTPsTsOX2cHp^NSv#$5r<&lH2~IgoQ?py0 z46_hR2mZ3qu>+Cdsl%mf^f0p8=ad;6p6y$kFhZcDmh%W^xmK`&9M)m9J|eN<)PUH% z*T+p0NwfS$Ao{_*@1Hz3v+sE=1g92L(p7R;b4y`Q!l^zQ4frJ4quL8qYn%eFzV`NN zoJpc;0NTftnRmjato3^C^QkHA8Tqzn;oBbbZJ(EKXGXrAS@?Fwd^_jm+ntebcNV_g zG2iZg^Bv7GBPHQ&;J9PXt2$*NIea8A>yx^-(FLf0Cwa=`xNo!DXiR%>;YViA>w%-a z+Uw&lULTK%kHiTcde&;)l3MR=IPVS_SL?lo19J_e1Jp){4nX$afoz=(**+VxJqu*} zY{<^pkeyi|J7+_7&xY*&4@jer+0d?Ym(SLY@Dk<{?Pkh81dgCS>E!+Rl5C=e>> z_Z(xkJpIxdx3*6oS>~j&{zi{Ew$@*$^$n*~){ZGuHk=sFOCrkFNj069fHnS@1Tv_r zRK2#%8G%C<%Am?4RLS1`Ehub8bPE0TIm-H`F>gY#29-5VnxXW()`L#B2_+~(NFf&(-Ma@GCS+mbSTTnx#`4>fU)mJ?nnhL{$#qmWUvU z&C}P+B`BtasbMX!JYoUNXXZBcRxg_|$#Vgv=dNCYf?L?)8yagQV`d?)ot\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_059/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_059/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ce1a6abdc58c64b735a465a2b18cb8c4286c1c38 GIT binary patch literal 2851 zcmV+;3*7V{iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe@lQfwOM{a8=6#)>WD2u8R(;`J<%s&&LEl1K|KwwEi!e6ieNhxus zy=(_}LGStueU83CFZ%+0h@J&0>{7B4r%E*T@Y~(9=bSxzu=^e0&x?Qm=cfzFU-X${ zdZ!-ZOea8oU(*rhdKyL?4n5EHgE+b?osV=74y_>mE?)af{3>3JmempRvFSQ-?a{(a z-K|tl9Iaed9R{Xl2B+NE*E|m<$IcfM*Ojb`ruuUcQoI_s_P*~^-K?0rh_nF?mMRH`L3=8L*EStLv`v2ui~(GjPyV? z4OQ6K;&mTs0a7v83@sC!F+yKUoT+{JxAp)2>zDstjh2vOD8#4eH=-csvpF%FD=5NN zDZf$5ZE!;Vp|F{ciP*^WVJ7kQhWw;jugB3XzGpf-#B&I7l&i8VwVG<9+$`6sojCf^ za&^t(L&uzy9`S+g@tm|<&5|~s6APQU^#ms4uNwyayRCYwqf|Q$z=0nk-L+glj^249 z$;xi4sdQT4#cgxoxIQvM58{1yzfw~h)n-?1cdC2RejMF|Q5$7p^<qdPKm zmb=OmRc`G*jiXO_*j_%w$mffj!d7vUKS8Iy=?r*G0<^Rz*I$4h2s8-!{4_d!Y$ZX2 z-?2%=Ztpi*6=_eZc4Tnyk!kOky^t)dQk9=7t+qOgGx(7#3>H|eNJ*sPeK6bC<^2siirPvp1e8b?GsL zaJnqBS1j;f2iZKACk>b^zm%0~qoP*#tGjAj0-tW=#0{}X7E9vS>PX7VI9k6HKh6#V zc($_pGh13147s{gZtaP2^gi904uDptO1EaYR%xj9appWqz9_EhcWb|F{7;m!;UcJjh@Az#upVj>tPO|j$x zC=h^yM6ysqlVrMB`kV_iKfyVI2WKhPe4W9^R7RsR)=;DPtia$QgKa7lSafnQVepwt z@h0s*Gd+q^WKhUBZ21gkAyv&-JcC$J>rA6}CNh}H%wv(6O#MQ=6#Jf?;$tSnV+JDz zV+Q*S)|jQhO+x*5>9Tasqzxu|Oh9yvx;8ecYj{kt!C-_9YIbDyXQ>Hm@dgY=v|+O& z_T12bncuU$6nj0J;sJv_ii3fc;t3-^VPzQofN8^Xs1tZJhtH_5jF6{KXumt6m|ff4 zszpZVgyJz`e1!&Gw972i_6igiSaVEco4CMlj^uYcb76P&!;TSDpc`{w{?xcDK@;5LDn#FFyF%(2=)HF1nF?lc&^P(fJ2KNhUT1)(8k&b z&Dt|+u-ol)s!fHV2DN5#mEP>AaQg#Sxp#rO0wHZq2Ab7UG0fv(JtP(;gHNh=;w^OZxwJ&+sAMgp+;T7cDrUT3j1A9ge zpD&7=x+vz?Xm*=aGMde-80j&G~Tnqf$3m=V0&5kPbz|;2;=w^2guIC zP@q{B0y_5LbdhpZ>9%Ryeo=w|z0cCP-FjJuZCfOS3x1|7`@IS9Ejuf26lYX>xens3 zHi^>5-+r4CObcO53K9+vGrvp99J#LS)(N})+UL>jBAi8_h3PdZe0N;Uavmu64i@Jrwe*Mh7q;iDp%B|w5LeGYL#k} zL==MgmN2V8I^Cus!K#v+xOb7*5^7Eo_Q3_S2Z!OK!(nE14;iknW%8SAnZp-Hzs)3B zl&E_DQWhnZ!Q*aCYVNfvYPVAdH-0}10uPsX9;gaQo4#vs{X{2NBLyNy@*UJJJ*`0T zKq`$zq8J`2;(Vp7l+|gsbK#lgru&MAnvZxmt^-dy;n9SY(s%n(UC6$fr_((A*#>_;pI#gO z*Njk2>v6dr4^N|y zDv!HzdKM8}u2i6ogPi*;c_ZLy!EonNMVLIoi;c1b&;LhBreV)@E#B5liz(;sfW>LK zJ}p+4r;lpwD|kdzc4Tf+lh0*fR#et)dWnA%!V0d%594&j0?4S&e9kFgY z;Urt+HaPMwMG&~Yp5Npq4~uHCke&UE&0v@vz^>>bmxqgP$@9@Dc>{F+4c-7joPA`N zK6%wMiT@hi^bxknCHl78?YtUCo)D~g*3@!c3>88 zD$P)JJX(d()pIA-Gb`X&_M2BcSqVSIYM|khY@?=-*;yf{q7iZe%msL~!jY}i0=k?T zSX%>#yq%T9U}f!s@fkWeSaBVUf)y}2&`gK?S}w*bM@O8(OcAf?uXr7Q#nfN%P5sSZ z)8G7c{LQES=HJxc!ZrOZT*u!+>Tluu{XL&UMy3u|z{fow4xClfG0qt7S`5S4di+_5RO36!OAzUKL6%b>iBtbf`+3+>OtbvgQNA#a< z<`R<`aP8b;2237ZGMT&Dq*&HdQ%4y;h)k0&o`Z5b*17u2o71`DKm{gcZ7{C@>Of* z4yl~q;PV*~=gAw7q|7%ku({2Afd{g;; z`Xz5ko_%j?MjxnZKt%BQr$iOl=Zzwl=foID)@`7jaLH(njtJ@E{s*EG@r}70003ll Bmiqtz literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_0xbc6ff409e7a11a5e715e4ba53677c9c8.json b/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_0xbc6ff409e7a11a5e715e4ba53677c9c8.json new file mode 100644 index 00000000..2739af83 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_0xbc6ff409e7a11a5e715e4ba53677c9c8.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "060" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a452af40550e0350dd21a139d5c54f9eea0b1c68 GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFoCodptk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9==@dKr_y_<1Nj@A4 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d9d2472c108590c04bec5315515ba0bd41b95271 GIT binary patch literal 1539 zcmV+e2K@OSiwFo)%z9-4|6guzWMwXJYixQhbZu||tyj%%+%^!7n>hYUV&?}*QS=~e z4&H5@{kI*r2#NrPgP^T@NDf7v1wl!p6}=Lvkkr~vV4%GO4WL`qL;EUyf<8rGr9(=) zYddh`bR!s+NDgPd8Ght`{Q1i7|14j!Pxd)y$x#CJge4F$4t3yt^Wwq>m1kFW@tyyc z*M7;5^J+FrIE^9CZg>)?2BI{J(}?BSA_*BtD!uS1&pv$|a7Gd-JfcG>(tb#aD0z07 zFh9?3pPpW)&8<$J&AU_q@tMrCnR=dG^#l)C-^QJbL?2-ljT;9-4uVJ=kO+nlA;_n@ zJ3r*vQmR>`&U7v_u0aOWgR|D?l4wB!79p^7TCOyBfMp)n~0-_6r(0S>`KK!RJ$*UOA0BN*ezJEGggHxF(A`;+av_QBhOCe4oG3ZcWF&D6ipfrt>JiD_mT+E0w6@pL9fJiag z%sNgQ03?L*B-Lt??@A;*8WHQz3&9(Vq1}q9P9mWr<`S2B1K=3z^5cFVS0;&4Tn+sA z4gpcbeNRFxhCmE!#^qyhBG6~0MansNpcIuy1hExp%8++8c7{~?1QQ()pK7Y`V?2Hb zTm1+Oset+f0Y=mvkFMBSn&l)|JRHQ4WDvbVx+yIZA~;q?Dow221lgHU2{PrA(Oao9 zs}@ns5Pd>*cp|BLqp2w$aB;xN5Tr6oKB@14WVr0O7lyzo_fAmlWpt>0TX5tU$#3`7km81#YqgtO8@LS= zh9u+tmS>gnY#Dc{y4j*kAJq?}acxqb-$}V=6C9s1S4)&ZqfbrOvjn_}*|ne? z!*fLDKfap3bjgRnIeoU+{asb5yN{e)a}1|Ut!rN`I{4f#t)14kQ%-Qq1g98gvDvLo zLb*?sgMW$d*nvQb*b%C3_%O2C7mOPlk?dO=KOo4Ymh%W_)h%H?HLT)jbp&F~sUWZi zua6rhlSc7Pko1EG-#>Y7WMz79#vlGO6^SW@@sFe zBDexw!JvK0xOqoHsYrU}_OKVDlnXA*W}m~b5dD5rPVCqu!~v^VH2&Sf2|C1P(n&tdM$}T`PpXy{)Odmsi6e3?aK-O73xgHutQ& z!O?84&@n3C&8`?b)L7xmT}&!lB7LDpSBGD*S)jDdUDGU_+En*0lInT)!v-m9h_^(7 zMQohCW-g$ZmPW(c!0L#5IG>x_*xPK;j46>yl%BiU0t#+v#WyxqPDt%SOk?WHXM$k~ zt`$`)ouJBHDsDQ2%Dyt~ySP`#0mF-zF-zT;X>HW?+iVW+V=?Kw`IB${{=+(cek#^$EC{a?T%8>#9K00247<&^*c literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_report/report.rst new file mode 100644 index 00000000..83d68508 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_060/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a093 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 060 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 060 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012353 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_060/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_060/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_060/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a749e921ddc53f5bbbcb8c404b80d69bb33bfd85 GIT binary patch literal 2845 zcmV+&3*z)2iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq!tQ8ra2rbUY8m|rG9TaKi`fWVT3gs)%$l2YPM z`_#z{-iprjp}(O&sr@Ux3zFESWF=0OXzbzH-Mjamy|`GM1^%-9kAHu9}XIi`2! zA(Qz@LOwQKC$2tPnz_4` z`iY~p%dW$~w9Md)8~d8)!Q?nv-47i-AWr@sM=O5l1g4GR;Zk(tF$@f8w72!K5l4so z(6teNVxc~;>+z1}dsuZnCt5*{p%6~dZ$&|rvNCyu_dTwSyH z&@m^)M|@y=JXhPRWJ#OPiTUl^W&)G(*A0XJy;i-|Q7WAV;J^=&?pm%NNAEnT$;w`< zsdQSv;8xP_C+tO0%oBJC*&~K^)zLQ5$7p^<v znxzKx{Mrk8SwRvd7|3y^Z(@z>L#TVzZber1Yw{Dd)m7SEC5~(6Akkpt^V96~v6Unde#a&; zyM54Tm23O8N=F8Qk4$^l?1f}u<%;}NX|>f^o`FZQFj!!vTvJ+*@H>fL;?2<e$zekm)JMp>;KRQA+%4LIG%iCbcUESBW2)u|~j<7o3z{x~}f;NHp} z%wlO_Fy!jBQfps~qxb2R=>TYTD)iEk%-y`OBS}T< zCjDDQV-9-8bZAG&6?F!?eu8rZ+f%pOJNaA@hr2T{*p-Bxyj0XR5+WEUO|j?#$P<8r z#4=w*lVrMB{DKQKKfyVI2j?l)e4W83)JCH=)=;DPJkQ`EgKcUQSafnQVeq+2@iy&0 zH$93|WKhTuwtNP&kh*3foc zipPlI3JtnwmszOoq;a{#jPG{vrEQ0$w7wBc!f zkT!gDl43meQXJS68{X+4YnV7#>|q0hdVkS^bU0|d&}JvVro|3JbAcnYu{J`p_DmY= zbvvC(Q(>e*wV6ChZ+298`h!-vcR{*>AbIC`t)p~Hb+yub9!H;CFz^v*SRT^&%iMCnZ76i}-cVCoV!ZWz6mTPjmUILMDYbFJM5P|wKWrGmJv zi(*cF*ngm@d0pF9wcJBdEj%dXwvi@n8R8aX0mNOo)*;GbLE9zjsMg$zqmM7EBh%5X z&;WV$Zlm?JT5Yt|c1Zz!xWky*?zw4M8t+-*z;rM_u)Qq&CntiT2;=w+2guICP@q{B z0y*~KbdhpJ>9%R!epQ47z0b6byG(@Eg2?*K#fwtuJcok-SkZg51ZvG1i1XEH1>`{lzWYp3YYi3Tbhl14|5QhRz|Vqk6}cuw@PKTS=(1?plX#$lVlW< z`Iay{fpoe}r3R}?YU18SVN0YrDcJiL!X6%lkB)|!^?hWxzLt@;H!?>rj(?X)swi>w z{-r8PP6m&=)mn4ERaU#5I?(vTFbF(cYQ+oHH)A@j!(VLhm*e!>^uK0= zdSZ8&3%$Co>BEIfaDf0$+bO`W38r1q2bT{HUY8E2cgYz7-k1>RdkV);6bA0M2rE-e|TpILmnr1nh{+gChU2|vYZpyAVOqpFbESs|yQ5pn{|1$eZ^kxQusbU8Dy zu>lZyyK6_m+Qx<8Gjw>k<~kS!YY=pxnGX52T#VO_k2!^zB3_fPcpbiC%2#|-zS1@M zO4s2lrF^9~<(t1I-~4s>=2O1;ALcusLq?{A%fNBphYe@lbPP1v^)+XJ)`iVHgaS<# z+73?p3i*u<)&qGw916$a=y2`ZS6_VlDkVNIPVjJ?Slv%Z-9O&UTpl8>?jLVtU@i%n z0c!Jz83=iNDP->IkmA)L#p{F=uMR0)9a6eZNa^a3`Kv?b|BsNQKCV{{#KX^24aC)( zlKz>h;U|Z@el`5$kk_w<9}T%sfr0yD+Zg$>g#VZr=gJqiEV5H2{^oyV+q!=g+~3Sh zD{Eh~Fxt!vVZTKFw6$1GZ%QCB{y7PFzUc((Yh~9#u*rf>nRx`cBNWJ2oH-qGa(;u) zXT+Q*Z#u&q~BF5XKb+W%VIKPc77@ ztFnUP&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMZ<95oOpv}wMYHvLeG5D%yD zl1OE5?{d9M_zS>D~*vvXd1vAuUmQ6+e(sN^@y1N6{{AT7iGx_=Y?`-Rx`f(pfUS5{;U!fD#=GmM`1Zf~!(aSs zf8f@Mqy>1lMRUnXsa5LTHennz)hWC1?!6~-0kKT0YRpJuz`JXNXWrdf+>B`4Kk;re zp$16CwRdZgcQ;Zcb3U%EZ3s0+FwNrDOzBB3)Qkw2fFqbxOb7?{6 zG=+ZuW*p$AdVI z(etpYm8BN<*9N|FTW}630#dTZyqju3A<+4%k8zs+?e)ukb- z1WD#;!Bp%pyhIAHOko_iEHA)VT9n@1KT`>MB)MUbksweNT3dUJmnHxu;j*l(S^B#t zR7wS@6{ZZ*$pYHlg4$9jD|kW@nodBXt!q!lW6Vq`D$E9cJV!tjaX-{hs40-Zl|}eC ztQdN~JyA&sDHucb1wm{Ln%3k4i<^wuA>FHE z8PZ8Gcql|kIT5eCyJxH_iINx@Z7iwJEsI*@9er)Z3*e}*v-6^5o3{qe`Sz&Fn0&3Lhv$s)X`un zVNHnbqmHSPGo|w?XCJ>l`sww4)Ntyc6&%h_ zwU?q`_=hW6e%ahEF){XF{|hBy|8N`Q*k1SU>npT@mCf#Q(*iBX@WqRMRI|Blc{?k3 zy!-Yl+5^^Zd##%xN2ic2wUf}hyGs*YMBloJO(Gs5hc@TldiTkd4I)>uu~5;?OdR({ zM*~!Rmk_Iw>}F1ILXg12=qT#@Dsg*!ER_ZV=P8smkKVeQO`oerl<_b90m~UahuZ#t*{v$kpx=kW$lOYn@^$^2`6dGtJ>F51yL{Dfh zOGnA$czB$gjN10UiGPECOt1ofGY0s}7{}i;HhJR#Ln;9>)H|PU80K{@GdTBOeOe{aKX?p3vU3Rl E0Q0DI?*IS* literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_061/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_061/afni_proc/_report/report.rst new file mode 100644 index 00000000..dd1861ed --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_061/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a029 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 061 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 061 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.07261 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_061/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_061/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_061/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..58318db8f62aa933147305abd4883279cb21b322 GIT binary patch literal 2545 zcmVb!>EBVPKz~F3LH|n6P_kxhC)>QN0Yl%MIdkTmGiNy8%pX?&@{i9~^1t+^kHdoy z3D}QOG_-6)gn>nnK$0*FqBu*hsz*INL=rd7e#q|pG5bEdovxb`6cHTwS@Y4#!rXg{?{>1F9dH?S>NOnf}6JrZLt z6a{r#DbTi9l*`rP-5loq@9PHp+a0abGn8Hna2zGb4%{Hh(o0WN-PrE5ja~=5xQIu7 z5FsZCA=Ov+8cnmMwEJear|hVES$ZCNJyd|`=_p-&sbuMDQIaGo>F7qg-U7+zVLT{E zCAkD0MFB^cSi%sdy4LI~y0N3`Ps~o===O~)J-3fuNnVy-(Lq@68&6EVv;8znzY<|( z#e|?ptW>23m8$p_9Yok4iG(I-ZAaIhgB?gTC`IBtJ452;Nrc}irfL`WTAhZvqbfZe z9DIbmEj&nQU=2loYIM5hBG2GQ9vB3uG*qJl3BQutrPh4Q53=-Z_jw~rKRI4a;E2{~ z&VycO!p~^lj+SsS6`SH3-)p?+!q~N`b>Lb)lM^Glx?%Cf=}m)@;$jigQfZF^i<W%CVBpNVHlFv5n?OK zagpND;SyVs&EYpp$6`9}*kbsw%;7PIJ*E`9Y;Zi|@L|AkmB|lr$nX+53~~;;5r=um zOmj0HLN3_sTw`!3bC~HI$1*pV`Gp2c9EIKzzu{6mlm z8eI0cgxD5yZHk#|WXiC^VMH7@?F0`Or3tZwBMu|h@c16@Sl5UfKk&jO4hJ5?BMyfQ z$0KWrXPo|w*Wv5~W{uEiPLRnle8_y|ltO#PA1!u7%cI-cnST4o6Td`A}s#M@#b*+5vV=pIlY3>0VeIf2v&LIaDJ*fA845mvY+^6e4_uETJIN6SWNMe(u`p*KrRrr{FD z9>Y%fc2saMiH}S82@-pFT!RXHG(Fbl2f#;*?}p|vAE8aG30kxl)L^^c>nUx6qXx}( zew3c?nQ;08SGjhAwE`izw5#@veqA$__HLGbc|svVz)GEDPK-g5bFu2>Z61I6$v1w>mG)W~*y< z>jv<{O-|Jd4zcT6V(2C#>=SY1g$4Mhmw~Yi{p5he$SXisY`HE1I`-K-NL?}dU6!|> z)gVFFc^bE^)pc05RZ6(vXU?)enE~JO3i7?mf@-g8px)`yEZz9-yCuPN5h3(0B9QUM zukss?t{K}JWw&3xpWVi`OX=+@C0fTw*3VBaiqhMKivZ-bRuqc&VV&2wD4+?q4{aBC z{~3tr6IKFhTLp5yKCgf>kig5&3{!2HK&Sf}<@|FV{V7+Ia7XC0x-jbMZN3=qK&f1V zfLeXc04A;}&-&E#s?qC%og2_&YMpw+Y^ytl3ar*p+BBn(%rnyB2GZ-d4HcrwYvS5T zVoRwxE!f|jnD*6v@@Rj&aeD_jL1b-|s&_W_pTGX)MqWj^sq3ezD8Csz?l;x;PN!k^ zdm6a$>v0^1q$Y|$RcP4^14kI4gPb1wEz z>{(&Hu4HUQNQBRI99nNhG^4j@GMCoGiIsc!p>9?kb1QSn9K($OvfEU)`;GcDr~o^0 zEa4q^mv4-{znxiG`H_zZEw$Q->RWg^ufw0L^QZIaz3G2X53|I7VNOVG+p@>Umf(Z~ zWZ7N<@}9}856EEo;No@af_jzi82zc*HJe)Jab3&C2k94$$9;YIEuy&IXuv%VYVKzK zA`n{fcP|BJlRNEigJ=vmn1u5(vl#`$%9epy|gZ`I~Y*rF!vyZ^Ib zA`TDYF`P{~R94?Gc!&yUyB^$?03jKOC|*07(<3Kij=K;Kd%Nf_FtsxZ4> zF)QW5;%AEEabX0jV#`7a4!X54LX-UQ=j)Gn{DC}2$iWeP<(XxFO3z1#c=QlG8w`he zXPiX79l+VrPA|a85XC?8#8ashD>8lJIeO`8Cxi4n_QND5`E$?Z;o|wqBr$v={_UXQ z1}w~NJMcU>itlbj`J)*z!KJ$!i|41i8;%uQRCK3yaRdIaM?V9!n?6Rt`H@Q(+FKj9 z02O}s{VjoJ(TZ;`I_?~4Ed~j6;#VIz^XvKOFv5O(`&J|H(XBfdA<)I}ENy+vOB)l4 zOc*1}Gb_8hvM|IEiCr{7aM)ks{K-=NW2{qO#l9A@35uXiGw0=|%Ii!foe zrAm=L>Mf$B#NlHnq=YYLISzqhu9nIo)cRVG#QCD9Uw!DoG(NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFoQLi9tk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=^Gnn^_y_<1W)~cz literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_061/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_061/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c99a8d0b17dbe9c24f126d646ea5d1e80f7ef7f1 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyfEL+%^!7n}=VC<2;ZQMGwN} z;N8~Qch*jWpa@_%2->=br`egd&E7e2;)A z;=U^(79${*HIwo&I2P!O(jw&?JWz_tLxR`}G-b#;8aqQOeS(P&iBC0E_%Rv3jjcfh zmQ+A}f&e4xPDWSrTH56#SUeoWkz^RXM!G325+XQOMk-BmyD73$qY`Awr=vGhWmhet znj!jx>hM@ncgIsxKICGblMzT|mwZ~^eaUdyaW9O3Q|=w3+Kq%t+)T($WRor0v=Fxv z5k*8rcE$Wu(ws(Su8o8_7zHk7en9pq!wf%bH7$$m%1wh8UQ)9Z3(o99lpALrA-ECv z$KWZXjV+jjS1E8089&!T)~hs*?F!K($=7}C@p8eDBP4&muSOI%)O@SmeAvTnpfDtv z?6=HR%ClwCrRsKzGJROzm)5mSd0{){UY_9Ol(|x}H2m4z7>_=)UC$Hnre;@zatzNA znf>&7;lc$U0_Wt}lJD=TO5Hu=Xr{W0h&@fG{HWFN6OzZ3m%36r6}UZ+jNJ?FruYdGU5;#M_w#Z)bwHb6&jN8S!>!!P}kS z?fy63@fxQ9Ca$m}-z=xDd{ z=IE<8M-$*Pt&l0kI zcF4}zAv?2#?3^94dv?g~{|IUMF&i7Khfl-?>*~CqKM@-~I^^tZ_~?+cv*CjwPcRS_ z^aqZyT%LZN8@IMjA6fRK%KeQWdu*+})NAWb!K`g7RMwpk&r6U+>m-}b3m`ZClmHUc zRk~W)5*+Z5MHy6jM3vm^p@>=-!^zB}bIAIJHE*C;LuE~)hOe5<)<&n>KnY5SmZM;;WSTm_dKbdbw6y7vW9p|Bv{18 z>1*a9ifL&zY#vx0au4TodmDRamh6}ksYL0yV-`_x%Upb8WA&KSF2ppZe*IK1EWy>H zYNZoYxy!{(hfq0CwtWZp3fX6P@v>&A8#Aq~x_)Qo@je!lftx-3_U}LK^Osp5JWtYM zUCOUmD3`6gcQ)I-9`qh;dM-2rKj^ffLpL@z9=e;&jgE^N*R16Bc!w*?Y?m+$+1o7i nL%{z*ICz@@=D-1bG#g)~Ft5uwZ?o?nrEdLSxyIqX>JI<_#{}=C literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_061/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_061/create_stimuli/_report/report.rst new file mode 100644 index 00000000..b4ab39b1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_061/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a029 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 061 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 061 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012638 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_061/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_061/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_061/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1e92444310f5307efc13752fad75b3d9913dedf2 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&hWD*^;SQ8ryArbUXzm|rG9TaKi`fWVT3gs)%$ic;cC z`!Y(B%ajHaP56|x2z4z?J#o{dR=f%JM>(hnwFaFH6 z{1YE>mK&mApc@EteH|kXN51a`VG`e#&qlfkM|PO}HCg*h@+w)4m$fkpu;sZ){n5hA z-Hpso60clz9fg){g(uu`p!+^dPU7XA$TdRZ4&o1OGyrye-qiyiYo3o>&9{7HTQ0(UW#C$xA9#iqjshlk&^`Jz9c5ZY-|NElW@JJJgGGrNqmFvTP_dz96=tHnxe?N7f6m>^do@ni!+UcoDd~F}?6`Ul#r9fw; zr#{h?_V&{x{*;Hy%SRXmd}*`rptQ*!p_9OJhdd?;TG~+>FTf8Z8jJ#dnw>o?l#+1c}K2w6(IP?a<;5~L>5-9DNogQN1Nptc%%!11=gyv+J=PRO8pXVuI_qC z{C4L>HHqJwFDW3>XxFEUUZ$NNlDwT=!dWO9;to5izU;u6##Jh$XUElD~FWR$nIZ`i1;)P87nu zmEWDk(xY(1HRMWr2P*P?dS$u*+T9wxG|TmBQ)^UOb*L4%b$SZdQ+M+B;le*@lZ9W% z$#PGrbuT1k@pUe4G!!kZOC{O;_w|K^0B;q_rnOZN9!kZs?WUkqc1Bx;LfN;riiL-g zRK{M~zfm^NK;N7WJuC=igTY>qVu4_1>UQ&CQ7GeRYX*i}QsH4yDjPZp5gw;avFrgT z5`e?hvRFowbh=o+$Ax;3Vu9e{X@>Q{VDKTe(W#9+(kVVIGI+#bhZ==8og7XWeCkoW zN&8PNpW+Oe6f%VEfWa)Ju9=9ZkP8}}Y4lG;22-1PEHaZRFVxR);5!*UWKw+0V8md| z;DEt8vlMueQ2riWmf>5p!DNp~h@n$z#}=iAk0~}8jIc?=j;+D0G+{0Nkim#H9CpN+ z8yYh6`;MPszwb~yWUxq`1h2V;WO&gGQPhn;AY~m>JA!kuzYjFlI1Kx~?0uZ4z*l!GX>6J4Kyh%Ve=d8%KRY9+AdW`a%($@Kfb7r zEZ49j6Xeyq&GuJXz1h(^6&3X1L&ntcPA%KkdEbtPmW%nJdkv!br#kur zrY7Nx&~A2M*6mfc7}uaw?!bbYy@m=(yit4BBd!P+JIM3`Jtu9h<@R43{4SSP zQR?db3ssb!3?BFDa%-nu)q33q(D=hB41HYYd5|ikYzCgm4N{*FjT{g;Qt#k)>1h=X z59Fk=NF2j0MaWkxYDJrNyXWp%ZhBquNDmMX+jZ#cM?9L4qcooOmie)sGQ4b#!K zv}cOpL;%^X*S34r$}^|{BQkaFYhah&7`uOeYhmFBHW5;4<#W|HV>+$FUu^J~DOx;Y66;!i&v{4EO&>X{BM`^K9PHEt@&c-GYeI ztDews=;=?%&eTI)1Bz?qn>qOVd}f^! zs=3*O9GQ@t4qFb{B62=CX|#gmorQ>=wLKFT-iDw&-x2pSqAH^f|s$15DUlzK>) zGXraD0Fl47vLCLjoeMrgdwVOMi&3}&L5I5Kl3&}yc;(=LQ<*8^75R!+;VWi*#W&?E zU6HSJ6~0o&S9(*v#VhhHUWIQl<6Hb;zGrjD$dqsuIPL_n;jCJ&i6&ct?hesvVZ8{U zK$As|i?hB`aczzDKpqc!g#&Q3xAM)ad*8guh@TZFcsNL{?xv*f9<1js4iQ&(57u%p zmxRm#wX=vh2zhWJq;Ppi@$!)3RYHoFhmiI2;>{O}0vp=$J-Q5rG zuIHwewWHe@t>;FtU!q{zny;oeC6F5boCN&9a>Lb?s^=ouWI?CQJc8UQlmzlsYet8h zoZsN{88PR{8;|suZ(>k$n^KVnvA5(!VXAuKPcQpy=p%z1BC98$2`xhnbSp%r0=@K0 z-jXu=-qwmg(6o@4;ImJO8mP}}B~IeR1Vq+Nke%?5(Om-((Z&4_5>Aq1xf}oh!O(~^ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_062/create_stimuli/_0x0e1aaf13355ed7c82bf254acf616f31c.json b/Afni_proc_through_nipype/_subject_id_062/create_stimuli/_0x0e1aaf13355ed7c82bf254acf616f31c.json new file mode 100644 index 00000000..87439393 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_062/create_stimuli/_0x0e1aaf13355ed7c82bf254acf616f31c.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "062" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_062/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_062/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..15f813e5c7680f9be97a849b71f1d451d78fb5fb GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFoJZ~Utk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=oUD|i_y_<1S{xjg literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_062/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_062/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4fa438ef6682d7ef83d0a05f8019349c2e6cf400 GIT binary patch literal 1539 zcmV+e2K@OSiwFo)%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@Hf&l3vgb!yW|p zA@-KamhGh7hGHlXq$sv!5ADOS)F5c-$YLy!DoHs>ivZh8u>yLV_OSh)OMK*{?8KuZC z5*8Hs&6Cqz>a{vWzSyS86E{PT-WHI8J4{5CMeZ}-51n{+xn99{=Bob)u#SjXq z`v}q)DE1O<7ro8SgKn$U!t_nA6dIF4@ZBQIm*4<=1SGh{e5J}*LW+J6gqE2J=S!-h zAWPCR@4F|%H93{3A|eG&#tVdtvJ&AWl7Nl`7IO)U2ujl=E%IA?qK_GIrXmQ484wvp zo7=!iLx7Ypo@QE2^IeUFPh(;o`VsiU3A7st)oCnr%=)BH{ULCSb@9<)fGd;68LkF? ze20K2;=Usx5hEamHIwo&I2P#B$|B<&d{BzYLxR{!G*!sk8apE@1A>VTNkBDK_%Rv3 zg{?shhEzZUf&gRMpNy{BTAJk~SUeoWk#rcpM7k+0QX)83Mk-CL-4xlWQ3*2R)6pB5 zGOHF-%@BP`b#yGLJL9PtA9AtJ$q1w}OFpgdzGS%UxEDsiDff?2?RrWjZYE?WvdI)} zT8Nveh-0E+vtmIesijdq*G9q|jKV%n`p)!8!XQm)yeOdq=Y(zrG$FK%btw+T*8nU5=$MnC1($D>b7*V7dIsoCYQ z8pCr$7C*jRyl^3a&^dXw*!^8sS$_{Xx$YQFnOZl#T6XZcTUk5amQzh|%mk+#W{KIY zPD*(|m4kn2;Mjpsio_AhHGCLb?Fq(>jY#*bO%M`flIJ|cS*|6luSRtot&c&hJ2eD$ z@6}P$WYR3Z36g$z@B7Ek%t~o z?gVf5zwwUen2{3j7Gm5s=T)8Y01h5X$_G$yt#>h$FXAlWYSOpaZ8VO1aPdcGx79;O zyR}zGpT9bq03VYRJ@l;AngzAiTX)_bGOpHo4F~6%kPbo{M|3b`@2!yD*&*9!hiuOh zvVC^Q&e}+`Nkh8Plogq&! z5Eb-0jxj4wzp%#M*6Ab5oK)7|_%X-U+H<|O?v%{hHbQ0HiSWDxS+-8H>AV1}@rMME zqOQ{Q+Lqvehb+pV$|I`e)+S1|#W9>B|N0!VzG=*xDArI})3_O^R?EBJ={8Y<5~3xl zJvCN%grI`kbUSXl$olyz8*m|kz=02`6;f~V%can_w>4Gtih2}A5#(1Y$vx@M7oJu( zIGQh%Iz|;c`6XkA8Y_CSgGuEpWFYkT>hLQzOO&>`W16K?o9ga)Qa$T_*d$dA@s>!i zh|Sa2%q0}l(r8#4SRHa7=W}x#dy_AlF(opI(sL(YLcuMq_{PTSF{xdOX-xgvsbE-w z%VpInC#Z5)%9{?Ma-dB6HtrR&&+y`9%(8yMv^MJcO}>Elv4jlz#p7@O`olbb=8J^e zBn{SOd&NSzY~;Pu0*}(r>vT3YAh_>8X!pbRMwj~Grneb(JRcRfwZ}VLRc5n\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_062/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_062/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9c260b9740099243fad8986d3d0e6787ee05f28a GIT binary patch literal 2847 zcmV+)3*hu0iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}EYT1&VIJT2%CuuSnj?z|ADgq!#Q8ra2rbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B1-7wN0?EJ$IOl9f1BqOphH?w&p8+k=C}x4_>P|MBln7m~l|GspB! zJ;a$#fc(CuBh2+Qj5r*6p6ds3bWb`T=^z|hLHt9!{`dHGycR91BjjV#b>iCNg_*nC zsh>Dnx$HU&Ov?;Txv{T#9!!p-<-O3+1LEX|I9l>UCopXk4;P}FPhen3qutQQMjRdR zL)S+9v4#4;uE#r??_t&TkfVC0hb+@Um@oGoQ}ujTSA(JNhJ&FxWx}gC>>VRLP)$P> ziXyN3NDGjPA!cZqK*k7tEg@6;>igB^%D?`z6)hphPza~!_o5)?vpF%FD=5OFQhu|P z+vEyjJ|{eiiP^~XVJ6{vQ+`^l*W>6m-!mN^@;QV&%2ipGT1~Z4ZkB7+P8@w@xw>ZY zp<_-;kNLp%cuv}_W=WgRiG{7)Mgo)ZHw}aT-B!KTQL3E=;J^=&?pm%NNAEtBWM#M2 zR5~qSamO4uu8)k+gM8oHuhi5=wb@nMo$8*nA4j)f)J9oYJ((p-UsvO3F((KD>1oMI zv)q85-+DnWE9AvI4CFY|H?hX`A=Ld^w<;@plKfO{b(MBkiKCl`=s>XJ=&lT%<*xEn zm0P>d;^O6=_eZc4Q#<*tB=dUPu;JsmjlkR$HCr8F(ZMg9TPAlG1{N-%b1yZ;s};ade~o zvJyw{&zBSsskds=MK9CN4@ut6FX1c{4RN0xRbI7W?$TI0wKNB6_U3b?Ey? zi=~CZkgH4O)}9zg59pQY0BCip^wKQXDh;(>Zq}ey;MVENTvyr4K7xLudkq%P%n|G&2u7JR%Tlnir6$Zh8fCCf=bv1AW-1fk@aI|X4opD$rI z>EA3F=b&dyhqi@WNoTO@Cpbs2J$1XaUC5PixHAKToxHGJ$d`1Dgb2n-Q!Kdv3IyOF zu`HC(B$+OjzTg7QPjHUl!C8tmUuWJ-V4E5R7M&bS7<}eZyhZ!Z zOpoFe85A;vEuX;B6eM_hIBa`W8G4(mH zQfN>((P^Z~*hujy!%SyZi|js=g%N{k(lt$=ZIgh*6!tBq-!5nrn+A(b+Bjj1ygY-c zBX=-Ju}{s%+K4fs{jL|{w1K@ziYM6XpEv#rJMZ=*q4dS)=Ky5oNs3*|px8GDX~Wa} zAZ_^QIK_DEr8uxDHoTKT)-Z7}-@^t7_5QpC>2T0^uFXz>O^Y3d<{U?8V{L?H?U^*# z?RGlVrou>rS~Gc+-s-6E^arhS|AKS{LGtbksiSnub+y`j5l5d~Fz^v*SRI+akiMCnX5(Ll(_gq zU;d?!zf3yF!xTC)pimOdDiM@Y6KKi1ooW@LeZ{-}fKRjzuOQzx9Z+T%)H8DUd{Nxe zMKPy7>Oa)fg05|;TJDjk79SRKTS&`q8sa8o0mNNJ>JViyr|lATBsF*A=;O=k$aHio zG(cXx*JypM)*5ZKT~FrG^S}x?3ljf2yNDU}_T1 z2(3mNX5Cw3i*X%F#Ou}PUE+FC>2$%*$1tMSTjh${l=c(}RIO5Nl8iz! z-w|dfkWRO$NU*A;ChlJpwnUnff?d53_TVsld^pUk?IFYUwM>3%J#+Z-=nt8siV{~3 zE>%%-GI-LhNzJ`hMeTO#K;uutAnT{@uNBX^AaOlqsOdh1EK9uH5Wk19{P za=I50T&`5$90xV`S@K4}(}Lm7r4wOt3okax65RhEC6$If*R^hknft$hu*s0#PpPh2qG^iG2zJe9&|dFbN6(a18ccttS0HC&FCJt%f?2HTEUH=S^j zEpnS2d6yyxTwl*`ag&EdwOGi`e#T}n%nsnH=pvVg2i=nAqfzn(=<~OD0|a^YkzxAe zRnH{;KDy;2Y?FuR4Y%J<27}OdbQhj2&FD5f8T{bKUh(9Fha&7rOXsh=&XAt%6GfJZAFxs+N!moo$F z>j06rvvL@$tX~K|Lk9;du7gpq0zn6w>5yN`#dziDh*Ov;;x+k-*WoLse8soro4+RC z{B`)|Q@;7P2ALn~Mhm1@KSAgT54;#*!=@@9T<7>_UtqB_i2nCuf zv>lxG6$|U@tOxRVI1rA&(ZR~MufO>AbxQoaIKjhFVzru(T0PpxTpl8>R*%**FqeeP z0JZao83=iFDP->IkmA)L#p{F=uMU~NI%NJjA@f&MvwARd09Y9OxO zmh>-F4L>{N^{e4$hrE6@{A9?v3Jlzz+Q!J2CH&{aI9Iv2Ws#jK@pt}5wyo8}V09xi zt*kxG!e}Eig#8lv)7E@7y)A*n_?IN$`KA-BtyEkG!6pkjW#$p&j!+cISFITxa&mr) z&u7G(CvQBGW4?hw&28liJczv|Hw+Th6McHsXG0I^o98-Yjx?PK-fh-2vGN4;jtT5fNS7{{Z4#=lZ!E002A&iYWj9 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_063/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_063/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c3738dbe1b5cfa973cd5543fac4352d900f02488 GIT binary patch literal 305 zcmV-10nYv(iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zy0U`e&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oM6{{AT7iGe6(_oo&2VKkg&R%gYj?l9wR3gb3s)yrjy&cz5#*-~Km$@QZ)r z_uVRyv;glmXf8P^wMxC)B#eWmI%SvMeeh%^AeL!WjTmVRcz1*F%)6cW&4|Xw$KI_c z)Bwr2_HHHe?pCT~&PTPiHK9fbrdjMvl^*9pO^JXB2!!_R?CH1OZB>>Fb7k`mmlkwR zQ@DB>RT8U6&ILkR&8aZ>-VVD60aB|pda=`Gs(|jffLv*tAjojQ@Yi^Dy*D^I>Bn)5 zo`+qnEVa15()X3yfD1?wkdig#?NkE_iG~vOAPB3gU@q0vu&gS|#_x~+ZLTY+E)7v7 zNHR+crecfXB~pN83gft8c>%`KqV(>;xk}I@$qj>y1c9p1+6qQ@YYb2lF3ZZAg}=K( zrBskwVagyK&!OEbs4a!Ef+r-Q=@=y1y76Q*!pxMS!ffEja|A>Y_ahC3ng9u0nTL8`)(U;V+C8r+Eu2ym^ z)l`xRXcJPti0@Q$OgplC0+PyfiE4LCs=x2y*RKaWNu-+(Nek1LP;JH(H71cLP!K;OYjWRCIn2wj}^!i8Nbp) z)|;v*LWXEr)_I?4Tx~e=2FYL7)r4X}t@RG$(*c%&L6c-&Z{F>-9c8{{qEMpTUPeDw+%Z*hjVu?BUlZKfT$D8cyxEf`i$q z_EHoK|8PyqubSH>CdTgXeW@hu9c*G8+w0zabB#8zwAo#3TA&3PynJ~W)ogBC-qsQx z?_OL-d%)UluXQuz=mfHbb`pAbcVVK7=vz0jNyLLA%@V>LF6hn7Am@#iR0ez zsE>;85n?rx-OLD12oiV@9Yu$}O583VNu`0nMG9rjqj&Ch)930DW&A6@&vM4tITPTv z+paU0x$P$z&Y_;M&+A}Ox7JX?_%nAioJO*->I~g;TV$l{tcU)J%LZ?~JPXT4b?x-a z>p1;iGqOwCXyT+K7|!m}l-@v00H>7CmQGNUSu<#*;bu<7W!0pVhI zsogXU1%1DB#SVIZy9r&Z1YOVFcmKI>zcWw5WQfFOJ;bmfg$CL=?42H;4)Q#W z^OHC|$_Mdr+CLd)`SIy#I><1LJN0>-l5PGPmW*5{JM1TEd^8*;y}=+G#%T|RFzn~2 z!=!%#{lve;9}}#=|BM0tGsf}%oQ>alz>rFS4E4^Y8-{t6%M333*JYJN{{Y#EZ#{Df F003-^i%I|h literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_063/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_063/afni_proc/_report/report.rst new file mode 100644 index 00000000..c1ace05d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_063/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a055 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 063 + diff --git a/Afni_proc_through_nipype/_subject_id_063/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_063/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9ceceeca1b91213446e2ecb7e8638f0c54a558e0 GIT binary patch literal 2891 zcmV-R3$*kfiwFpU%z9-4|8iw>b!>EBVPhMIJNx$J-~ae;w1#Y5#^yvH3cOIr<%L|nDD!)jLaD+Ftgu(! zE0$s`HZeTtiOswrJ*qdGade9t7&Zr?9771Dx+IC6w$iG$tBraujy^XXO*OgDHfEIv zTwu8zD<0N!xXk5+VmZH^z@+`EX3&4wX?A*Yz1IR9cp=gp)A8cytw*9HA9mVuuLD-x zHb%DNAw6^<)OSy64W(6Y_myt1ek7j6(M@QzP!7Duy(ICAdK|6hd7j5L9Z7CiTTt^0 zHyGsjf>3~lJZpG{ud+iJ>RzK?m*gW+dZcvva!k8M9Jj?3&W9pH+@o9NXI<#KHdW6|)rNGv@kDNl4ZB_+vADL(nn&6O3;Kj166alq&I3&o0QC!kcZ#s@rKagBo_zh5X+d?%^jsptzZ z(9@=UK3~x&?05;zV{D~r%lpNA#SahWV02L6_lt#!rs5%jX;Ks_4uB#Cevn8OD`=K< z7b^GJK=l%w$9Qy}Vb#+p{F2D1M8+Je1fLfvJf^TkgaVUv4rUZScL*+%`g6l2I72#t zl)+K}Yi0N)72+v{5rusUdlXhFSKtsK z_B+Ha%{54YiXIgZO(mvH4Pu%7hg^`0rU1oDelbQzP;dgQ}-7(K#|Rs1rET z$VjuPp5ZgfGL7;USwkuc6AF`{tEx8NCIN>T9GX(N2!in>__if8Z+jF0fW0BySyyJ-J_PD)shp9DQ^_z(c@F^)MyIAS>6EV_-cA zw^=RoJn)0NPpi-146Z3PQR+6UKoV}vsXz|s+a1CHx)RXEk6%28^B*60){8Gc`*i4k zmQ>)w6e<{CD2dGqCX`|u%#sd!^*W69Ip=sIF5x_8NN+||S$W)@4_E@4Mv`!J3^xXg|WTQfr)=+)b; z&KF9f)m6Gx8TjEoC2Be6hH0vtYlb7k_PLSe=HMS+2F3!k`)7WDtQ<52s%aviWACL- zN_Dy4C2{*%1p@RgP2&!mRSBkT6%#J_q%8ZL8SpJDC+w8wRC~P%;+-yz(g$CEoe@kE z`98jju>P3&O>)DLn(|>2v)hlZX19T6VtTuZiPjRy`sKw*srQcIA^^H>rQKzQ#drdIox8opi{R+ncRl#X9baZx@=!DVm-H^rk4r1m9*Nvux8nGUj4D^Ar7|dz*SEtTyBES@eGGVPDGjB8;oG z8rdgjS*l@D*SR||VtQRqFRSb6Qf+(z zOH_e%_X88g8SYsyhEpkw*2j(?*eZ786;A}?o8$Fp-GyWaWw7lCO~Vdnxe~j>;584i=iAoOg_fwQF@-GYCL!-aZn@zT}Ck1cQu8K~N6eDbf=l@)nW zWHv2`2LmG`J76GXOvY6GV5@SQVU7$FF&nQ7ZJLE?Yzu5Y&-q4xaxUmqN66>q4_M?W z4L>a*PIElOx@Q~P40fI=?CowdhRr}~z@Q8>e@-rAl1wNm6KpB{Nf-`8U8o}n)|EIT<1{SMGlQUU~^UO>Xzb*hj zvYP^5ETxH+*|X^yI-V$hD_bvtca~blUoja!k{x^+mTaucwm5zgcc|J-%u3pDjRG`c zIoGe5Bex%;vw@>}dh)jKg>G;g_+qxPDR>FR(UYpppqYkTyuKJ`$ON!%nM++6N7F(N zHeF^q#_mJv+pwOPY_&3rCw?~mYa9-un@PU=$#ePJ+4_Z57)Srq(GV-x#MuW6dKakgeJp9Kqp${T~^H-gJ%{003A1dZ+*Z literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_0x4586828376765da3dcebbcc65842752d.json b/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_0x4586828376765da3dcebbcc65842752d.json new file mode 100644 index 00000000..e6fa91cb --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_0x4586828376765da3dcebbcc65842752d.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "063" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..be8afb0ebd99042b81d7495bb416c2411dda0881 GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFoX73IZAp9IBe%p9=hVy%3_y_<1bh#Yu literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d679292d1477d380f2c17b53a8ece44aab027690 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&NqRv$40{mV zhuB*xU*lvOilIP|qS%%_v=75lgPGU`iv5)xQt~A( zvZix|AQH*LbG~!FYjcUD~s8mm=N+Sb1Z8$VI;!@ga)HfJ6ZD>EXeT znO;j3jpR({24#wfF80Z+HMm5Iqb`jA*J2k(65cmWFF+u^;sR1xuZBD()#HeCxlkT} zGzOBs0^8+!ySdk@)oPHw=@nc-QUJb{rFw;&5FY?>W-;F^G8QBOKLA3B)P(Z|mSK>_ zNuKwE^Wmxti$o%x5Qatz1dFm3!Xy+E6>=!%3KWq@h2tdCcaOOT88IqD5+F0cQ;4=02pC!Ji2LXX_gZ~@n8@}l793G=q43U5NA*sAr-QA6J#@^f{2t&MsKIm ztXhN>1@sA4;Z#!hM^jVQXMD)efCy=pd{W<`ps?()7Y2l3=1)=WR)Pg=CSWJ9$rNo; zh&u_7A|xZTVnHgfrIB7}0AWrBT@NxpK|@R-!%ylp!y>bCli<0RRIkRIQL_-m##sUg zUPOW^coJx13MRpt?hm~-R|$Zz-60Kdco50XMJll`qXqiONc))yU{Ji z;2aUzPp_7*TnR|mIe)g;{au!+cMP1|b_}OXtt(%zI`BLwteyJ4Q%rEo1ScP+vDvLo zf?0s21Aj^2*nzI#vBRZn_%O0M=9C#5o*Y}7po@S>b>|VxaxGzfIVi(uc?4qHDFLvD zug|I`lWP8rfb{)`KRkJEWLC_wi%)BEmWvSC~pHEF`%!#)#58lQYZ{xCfn{(oA&V#o(#@oCs-qxIWTl3&; zjq$er8}De28OZ_f1I7b$UX>{e$jKvtS&x)!+bsy?^C*p(9QUW7*L(L4L{~%gYoc@*kD{;7W7AA!v}|)pA8=za(*_vH{>}6 zf`Wd}F=plIm)5wxKYL`Elgj!VJ?7ZjdZD(qot#+*MyPB%A)J>)DLP~(z zlOu(P5Gc5|+jJXQ>gi3|V_XnKPJEJBA@x?@$c4VWt;wvDmBVfr5`D9f+~a<|^sKnS zVZD^=7?~aFYsL;VR`~J|lG1Ca$JOZS@EbI9l(uV(>d|FVz36^eMMVwamWZH; z)!A$23W#Z8G^`CQPni$%nYoR<)vIPq@>GEIJk%>7xP=wp(Ab=k+PRp9)Hh~=K?!c; zRV$o;%3aHEItYuNH0^t^SJ05c#mktbUQCrT>iVr-g8NvEdS3SA+rR%b&tG~OF`J~p zx@xajAeW82cUn7p?Y+icbGNfZ$%Y_Hc(Q%50V}4C$LJ o3_=3`yJ7E5Mj!`9NC0M|s}$t5XnC7`$5YS!7e(bmtLhH`0HLz#2mk;8 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_report/report.rst new file mode 100644 index 00000000..be1d7a3b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_063/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a055 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 063 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 063 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.01242 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_063/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_063/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_063/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1925ef7223d96916719763ed9757b808e935d6f3 GIT binary patch literal 2850 zcmV+-3*Gb|iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8d;K^IChe0CuuSnj?&grDgqz~Q8ra2rbUY8n13cfTaKi`fWVT3guh?`l2YPM zd)3Jd?tp9)7!f_MC4I4i?`6e_8zdzdl_^{-Vzu z(>wJLXF37$`m}+WANa;m``=AL8}D#xLWwXhj_%ADgZdS066S z+}%w5#L?gA}f0}`LWvSD($WkM>h`9fndkcZ5cXC zUFESVw|1Yz(Wg9IUOvRg=L=iHgTfYnf=+$Y8St1SXn9YrKLEm*eQY`H})6^;UJd=oQ-eA<5hMC7gw#A?~uH%8NG4T^?(vmgYds-gv6iYmXp> z(`A{xg2aClWb<5}G+?s)LRKn`vRc`%?5gb=aJrEbH^l;3EXiN1Q&V2V(Z;3xadsHM zy_Mac#nQrH$kl75)}9zg@6#*O0nqAH=%rbymK$ol)T~0Sz^&7jxvsL8y$=`uaf>Yc zQchO7a;0-ADT}XiakDO~NnOhE{(qMi7JR%T6b*An$ZhAPqU9u@P_&0Tf>89#9ZA^E z=Zn})`ZtTlIp`VFp=}{o)EVsh3C?P^0)vV(^f`HZ=+?Iysmy_{^nv zi}s(H9>pm#C}ap*K7(0ET{98SAQv<`)99Uv45l{oSY#$sUZ|I1-?LME%%phCV8md| zV4uMnvlMueQ2s7mmhPFf!DNp~h^|p;W0O+DV~Pz1BW%#HBeOp%O<0RJU@)Q$n;o&| zh6c?1p6#XB>)8|!80=9T473za82brp!}teG8=gZ+;L#jDqg)vyPoL0!cSJF}wz*Y{ zjL`|jW5jTU23@qvEY$WSiX}E2(-^tE6n_(>&-TL2j;NcyrBnNn$@H_B z`W#p(G$@?tG}2^jr1+F!rZcNWcAv?@h`}`Jnx@aTNx)$W`xeu0OB%(d!D5p(P8cIE z&tU4v9SlxDRNU~iJ*3HJKujX%TAyZt~Ye)0J^09kpGV%IV#_RT@s z@H9V28$LQtF&=v<4s41I?_`iQOdQPjumM87KW{-g95kM5vlC#`VuztQ#}V3C8=+Zy zCJlDGold2xFw&sfOdh369TlGbpjGZ(kggy|-g#E*DBV(Btu&v-(I*!Sd;}WS2&d{8 zY?X@o3{+2|Z5Fo#0rbJ0=cO0$3@)qXn%u6JKqTCpNr5cLx7$sN(G{Q#k>B1PqYrNAm26}P-Ym^GjjNR zLEO?sF{eK0-`7-0*S1tG_drw&_Y1i#q~$ja5#;d_h`VyFLzKmwwoBAet+^XVA755S zrlVV-0rKkIM(b;}+Gwlok^=g0n=!TBGt;s(-m}7i>0o|fds+BTP6R^{#_=f*ke!90 zK(j0aa_qzDBISzGZPUE{st5^spOtaD^^y#iZIK8r_?fEg_a>mX?5wz1m`UxGI+(ZG zBugKE_gyM5Erc;SkZ^dI`F(QCk?YECov7PSUaf8e-6HaKkqE6hk@cI47p2m91_uGi zX)(v;?!$FnW>x`BIDOQgf$o0`R`eb%fm*W$;(TRV0TPJ7cb_V1t)YUP?$(LspX%rj zn3{w$LaWh+S$EdhVqAw(xeE(wbn6Nz@p|QHm$+V3I$iMdF^s77R;jEuYkNu!RIO5J zl8iz!-x6jgkWRO$)L>OfP29aGY>6}{1$*y8*n`9H;o&f|wucPY*E0F7^~~Y(qu*tc zDoR|vf2oR+lfk2IwbtBgmDO&i4mAES3<3`qc^;$+DVx4)aQ(z5L?Z`8j?_E2U4BxA z!vi^KEE30XOA+$rl2THq-Oh!3mYZHzJk)%|!*(5b+6j*)asE)c+JI|cX^!L%#-;PS!2>(T-B4!L9GC$+X(t+yVP>hbV2 z`l$S2ZB}SY4Uks@1RI7FFTC`;iOAo8D0aCd&MI>5G3-7=lpe7Gwel6 zrsIVHPG0xC+n>F|QgPtN`)4Z)3kK?E=HD)mbKpqbV!Vx$+SpD|p7vH{2iJuoIcsNR|?j@w|9c^ST4-r@Qj@C0U zmxRm!weyG>2zhiVWbW#a;?*I=>x2}q4w=6?Wd1rK^H+zIt_~^vA0bJ7T(264ho7k$ zh^sdx{WDd=PY!wgYWT?^uU`#68gi}z1NXz|1mMnl`n2tWT#5}o&S+->)v5- zZzD6UtUb-bXd^R({Sx`p)_gU+DS^cJ=Op0yrW35KmR$$ICJQ=c<`LwMP{@<7S~EK2 z01ITH@VOiS06jH^ Ap#T5? literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_064/afni_proc/_0x837b611046fbaed0402751086c5c5aea.json b/Afni_proc_through_nipype/_subject_id_064/afni_proc/_0x837b611046fbaed0402751086c5c5aea.json new file mode 100644 index 00000000..d91fcfc1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_064/afni_proc/_0x837b611046fbaed0402751086c5c5aea.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "064" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_064/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_064/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8bcca19223b6b25eaf89e738aa4c869ae690e373 GIT binary patch literal 305 zcmV-10nYv(iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z>av33&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMICj+^hm=;X_W=L^ D3v!rK literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_064/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_064/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..25cf52abf9a27500c3e394970fe09ae72832388e GIT binary patch literal 1292 zcmV+n1@rnJiwFpU%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasG-+;4n_ko+#KS7Q zBvP53O*XqJ2%$=-sG@|2qCS8s%QJIk?X1ThY|m~|6bW7`D)|lb06&Iz{uReFvlk*E zMPgRk8T;5i-#O>=cYa>|oo&8XKkg&R%Zn1Cl9wR3gb3s)yrjy&c(;0rZ~vP=_{CrP zeYZv=Ex@}?noCYfty1r{2;-osPT7TbA3U8Ih-F$;BSsnr-rXQP^X~S1XGG)UzIPi5 zH9#`1y<3UAyO}DP^HJ?>U8oU)X$H5aN{@4)rbNI51VVd$`s`cpwkykpxiWc&OA9)u zDO_ERM-r<@&ILkR%c(H<-U+h^0aB|pMsd5#Q~}*H0lCsPL6BjA;csy5MsIL*(vRa9 zBM-A$S!!{9rSB`Z3FnX^ASG+eJE;aV5)CDugCMM~g1b~x!?LO+U zAjzyOSc+|in@9ncDa_-hRX$(*jF3ZZAMZCL0 zrBsmmz?4Bcor!1gq0~ph1I~17YK+V?nfF5H31U1GEX0e zB}X5&D=H}=1!JhbAc(C&)4F_UagtG;5e#%pGHR*8kGcH;jz$6kpMYir0ScPTt-EzD zLpcd14~=Lk$Ks85_l;F0Q4%wwjV1NE1+ptv4Z4yG>%Gc^stIa2qA#gsOF=!FZLQ>3 zs;MLs&?c08k>9E2SaxLj1SFN|64maORO1ywb|RZX(iVxhUn(Jp5usvPrD;tgw{nPt zIiKVSMt)AFlw*YN_u{~!P`QQk=9J296-x3@i1y;FBZNdiwgk^0Z9>8{{8)iZk?|`% zWWA}1B2~$e`?zDOfpnRa3g~`ND(r#o^4lu-r2*iPky@GiyBVtw}yk+ zs&-Qp9RF}l&##-^B^Ji+?|rEx>>X@j9^38SeRB;NSeooECN0o{3|_rDjA}NwlDEBt z$Gex;IXz(Qw%fWHa&!XO;&c+UySs4FMf7c$C=&4?sQD~f?>@V>L*yz73l-hW#BpzU z)W?JG5n?rx-OLD12oiV@9Yu$}O583VNu`0nc?xCCqj&CBqjPnOGXAySXE|f+j0tc% zt?JBeZs%!+eW+*bi#l1vYRLnZ^W>lr|`klH>6dhd)5Ds>i zTYYIT9#S<)*H9o^b$h#$OK(^h!=@W zIkvU{qDl&GZP2fGZXG*bK}L!H>Wjbs2+yBxgUH%t$i!CN#88lefObxfhRLAUi~EB- zp^(M>_;7gKi%$mWae7RFqQ=$hu}ik~YgjUJo$Romr18;knDhpNY#66K7{aihKN%+d z6X+-YE&iBb1^#CY@Sib`|7UFc)&r(g0%UmZth-^F*SO5!+D$kb`k?~2><{v Cb8\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_064/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_064/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..57b31e7bacfc759dcce1c977caa68d9576f84712 GIT binary patch literal 2541 zcmV`niwFpU%z9-4|8iw>b!>EBVPX&Fn!*9=?J$ugCv)FIil zBuH>PLJp?V5K%1AG>XDF$+PSFX-^;1)JyUo^V@&Uf5>lToAwmPl!QUvy1%wGcV%TK z&u(5cohHO1$+0wxQ53=8Jli}-11Dide$2CtI1Liw<9xD~U3vf=6F%G9&dklTLwOSV zSbpK*5qLM00~ANp4kH}c5s9!z0!-z`C?IwehmM_0;xHXg?1d+?P1E5E>?AgEZKYO~ z(WxT%;ifSv{AhjsuYdfV{HH2s8#r(+=1%r2RZ%OYvRW!vE#+RlQmZSfq~6_D6g6jR zQxd~S=H?~yp=KC)c10eNK!#LKAcdx8ntHcmw;P>COY7&^*Iwu#Pfi0euiuvwKawSV zUn{Y;Tvn?)F+w{L0vHsB;qu@ib>oM-Pm)JTgy}ov!ALZF)==E_4qGzK_{TnUM*2{{bFiF?6I*m3+K8liINvWt6 z=qO7hCKO2{nCeDrpqbWzZa%cT1FJW%^6b)c{7mul?3xL}#=v@Lo8A3KdG?tMD=ViI z$8v2)xmVkfU*hAK1Y?=91Z^Cc#uKmui3X)uUSwxPy&{S5J0nc(>QTGf)DLv6Z-RsO ziN8mNDGRKrnUAb)&tB#k{3rs00JWxWbs^!`3cJi&fPyg3-tIkV=Gl8^s|g%2x~)af zn_T!I%iHM^E~nyC+z@-Mr#%?EF+;~53ZPssJ+=(}0iMq$+%Da_n-3tm(tNW8ZMX5(*ud3`;Ds>tb^6k2N3Wn~YYgZ}P9RY`N zfy)g03$r`B)pDJtdrL6ht0=qGO5H(hiey$a)p`h^$^cCY&1xObi{WbhODREdfy)e! zPgWSkj(}fq9mI9K3F7#qD&UELeXf*vd~h-s@JYz=4ws*hh~pJM?;_Ev4A6vlQCN1 zxu8E6bp-o>c_RwA6Lfk8pKxCVrO26cc{t@*jO|R+s-X0e;~5rwg$55g6aw|5D#ulE zI-xNQhb#PDvVuV>%;s~9D33q(1vuqqMxMj6nY+Trf@h8p zE%rx37N!E`Nk_<8ekK8@D>(85xnD&b6IaB9H(m-#QANPqP&gj1aLmYaL6V2CYtUlwR)J zaQXvRxp9uQ0wH`&tg;v0QK+*}}0;0$^s;i7^i3N=@ByRJCm18{I{A)j>NpD&JG> z+TB`t2cycit8POUfZR3pK4TVVxLv`H^v-^seR7cJ>$Mg1!Iwa_Q zk;d&C4HK4aoe?hhS+MN)=D@f7lDb`6QteFx)Vn>FrBA;9enl`nOewpINOZFGo8pFJ z8rHtS*zKpUX19ssF?zesh}IdB^~>{%qV*5qA^vU7Xu`IB#dy;W3EVe0)0RaD#z9t>J~=b+oP2YmzF z`0XS~B3hSapen3vMxiT>3Y#z+yBkWZ-ofm~qb6J)*iB=d8HO#zoNqR)hP@C6=k~0$ zSXVkhF_z(TokZxRjOXkYO&8L-JVk|vuj}U3v9Pj`EHK;%AiFJXf6#0^h6->}7fIiN zcg4my`rBJ;Yd`T3VWn0-SA9!Q7j^ivb^d%ly)yl;=;4;cFU&cq;~-~pW(m$YKv(S* zps$z=y+#Jh2N$mk7u4%)$C!`wp4~FK4;n^3InF+AJ{Xv*ZxO?dW)tplP;;LbF9H!t zCVLldgvAzKZ#Q(<{~s5XMx!wFWFHYvxXxXJ85h^}#btGKu~l2&z!tS(-~FEjlSy=( zOyE>Xv&~6JlK`a#=i?Qk?II+HXG zoDj~IPId)OhB*1DC!VreuCXVc)0eJJI?OJUAW9QjJomgiT0URdG=Xo#zg;}qf`z%| zguV|)@tv)>cr>FnxO8W0`TTTe%S8!dqTBVWTkuDG_8DN^>@fa_csGy_5MA@P*u1h6$^!)T-=J zZy7Bk4sSXkBYXwRaVZq@PNgbCt#5>BQY?D*+3OxmBkZsNsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDFoG0z}tk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=17u`M_y_<1M%Eh) literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_064/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_064/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6cb484f59b0576b6e561c9723e6517bfcd68d3cb GIT binary patch literal 1534 zcmVcYDKkaPLVl|TO3xMUywIiu-GO5BvDB&LkGg!Rme@qox&Upatx{(D~g zH9yU(dJ!?4kX*0(f?!3ER5ZzAn(I{*Q6jMLqmx{J`Z#11rGooNMS^F&2o)%~zKm#) z>sx21ySVY7lj~&XQf5P81adeSezi>R>z?pze;QW~|Tnkf8w)(k%HTze7P`*ulG=?F3)oDcPEeCc+9VOT zQXa=h#%9HWOkgV`z0d-|91lVdB0ok$Od-Ngnhm2OvvL#g!b_%C6V9kvh;rjB0R=B6 z!4y3SvM~u0i2Sl(|}}H2PWJ7>zzPUC&bDPt2}`ZF(j zSUT{R296yF1y39x(L``+F(q9k2Nkyv_9UG0qgI1Yl0K@uP?g#Yc=>gBSm8_( zRRPc*rp&x!E@h?Lb)Qd7Y0b&EH4op`m~ZQ%eA{#KZO_BEJ?7iKDBsSUd^_{-?Tq<$ z{+sV;ju|Nk?*Yesb6!;`3&`;!fmx4K8`~X#@_C#kOpg0@I(SRTXSHpfpmb{2+;w^?mLjp^C4U3L$>CDY@H9; zJ|D6@4`lm%$jKK_H=qtt!YOLtx0R*MjP>-w8)!{d27A$S^z%&b|Hq^t5gnHinu#U?q z%oQl6g{fgJusmTt%xC5{_ExW&G08IlrRRZOfr4Au;u{*9Q>AuMOhf1!GhmQ{Yem*d zCs5_C6*nD(MNgXc9oQ>qNa5mT%rY;bN}1~VtzLrrSb}<9{^Z-g|1{5EdKobrq~W@1 zuUJqnoATZXA2jgpuD|Prxb1nJ1`b;fy&xn|L}P!a1>#w^_Hc(Q(`=S7is+j>3L*mk k!>IQrClCW8BmlF~RSM!-w7Si|OES;>7kaE_Rq77_028q1-T(jq literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_064/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_064/create_stimuli/_report/report.rst new file mode 100644 index 00000000..738a11ac --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_064/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a054 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 064 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 064 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012346 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_064/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_064/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_064/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..75071ec4472d04352b4a0bbe58ddb211983c70d5 GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIJT2%CuuSnj?&grDgqz~kv3f=rbUY8m|rG9TaKi`fWVT3gs)%$l2YPM z`QAOHGnDfx>&cTDfZ zL!9XZ$RB7r!dzd&h{K`hxqc8wx9evkU4%m`h<}VX{vN-I*P~T+jC^dmPF#DmG(ZH}N&kgUNBUx*IxrK%D#-M=O5l1g4GR(Nc8nF$|1ow0HH15l8#{ z$h8rFWT64D>+_E0dsuZn^%QhuwH zlenT#Earunn2k*zW)iN~cnqEyUnCNLR)-7xsyX*b$krP^%*4*U@5uI2i1^xl)Ytn9Q~ zO1BLxZkj{K^^p;Jknh`jm73bDwt8x(Tivbi#nE*bwNVyUPiD#WZ>n*$oD&3r^t5HA zRc=DhZ@r+O74l*p26CL~n^@xp5b92?SCy6By8J|K_moagiKA-=XkW17=#~tf<(~3H zmD@W{(tyeGOIfKlD{6JGx}$dL!0B2}+!709u_S-(Ze4j9N1GS&$Jt>3_f~dq z9!m>@5!a}f+q+^M-KAHi3!vSt(o3^it2EU{xmAN&fm^31b3J7@dmk?RlQvoSg`BMR zP%_MIA@?vZl`JO#g_1qm7KD;#ZcD<$e7=O; zq<^bqoPoYE8+s_@N;-pGKfyVI?U~!+Ln&9n;r1L1xAVe7DPPhx5+ax+O|j$xkO;s* zVkwo-G?^}zzT^VUPjHUl;c1FBUuW=289e^%V#hPscRV?0a^KkC+rs7>pQ<8SFDy zW0nF>63XAD%hElQHkj-&3DGr5ZDLYtctWwkV1x}Cc5Dvjr3q{Ch73luVY4Il!qAYJ z-?zOKdwrYYA%i`NgQ1qhbp;lYZ&Sl`$hRBJcBE0r7m|GWe^EB=29RF^6eH?038|R;^znZ@cbtaJp17A ztG^8JS4jtXm_kPe6iUKbC4#cv0$TD;w_1g0U-Pa%mu z1LW2F&Gt8Ht=UmKWd-!%L&ns0Pfg3xc+U!lri1yR?PcLVIT4IR7{@0#Kz0^}0?o1z z$gz)RiB(LMIX=-sJH4M&R1s@Ab|*c|CyrJn<~iZUV~`GoPm9afdp#GUiPmPm6_u=mb|-9HE)9gH&TyU1{TEt4;9WDZ^&{vnf8QR3?E zg(^x;29JBSdTX~`QG4A6(D>6R2s~Wkd5|ikYzD5u4HBOajT{g;Qt#k)D59Fk= zOdP{4MaWmmN?DzCJLm3MZgySqNb?a7+jZb+$2^*nqcooNmiV!jFuZJ-R>#cCtY?Pd zL;%^XRd;%o@-wIaJv21#TVR*m7<>PGXKCpTn+Pej(z)uJGo97puQvGWae8g~Uo%2I zu{+GUUR~Gp(ZVG-M*yeo6yVnc(=O?Q%LfOq3kTHOsq|6nHF=Ly9E(v$MxA^ zb#->D*1myTRE7KQCoULodMCjMo=Rb~I&yK~Xk;0eydoG~AFW2K9uzw`gKbA_m`*s& z7Pu{ryh{-TZlLFj-1L4yElAn<&%_Ky*&$pNUF7ocpj+{LG)~?Ceeo7=fFRF4GEASm z>Y2trMAvtD>cF(n`uqjdX2#G0O$CY@rJEV}`(kdL$yGA* z2^lgWGaEK-vPEP(a>mCQ_~#j!WMJUCcE-gVsfIJFBiD3@jq4pHHpW1OGRbAOVHRjA z%}{kbUWd{3GZLGbH6WJ#?iEi~!q2c8X!tnWtSMx6R>-MnjGO>-0Uob$w_S!+Pws9`_9PRI~xei9b8U!6`rbB)$7vr_VLr!6)h*#t*UWKoi@)h5fZ~lsW z^H<@UPxFxt$FV82BEthHE8Z%ZIC{v`=`zUc((YZcc)u*rf>nR^7eBNQa^RclU%oSfg{ z^BFPc$s3R4m~UWEbH%*GgV1KMwE~yt#27@@O^}`NkkK3+5z)o{4>^2G1i2gl0N?(9DF6Tf literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_066/afni_proc/_0xec90c9e1a19cc00398bb60732b469df3.json b/Afni_proc_through_nipype/_subject_id_066/afni_proc/_0xec90c9e1a19cc00398bb60732b469df3.json new file mode 100644 index 00000000..48f1930e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_066/afni_proc/_0xec90c9e1a19cc00398bb60732b469df3.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "066" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_066/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_066/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..278cbd1bb4101bd76960f91ce7fb1b168550b441 GIT binary patch literal 306 zcmV-20nPp&iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{-J{6&8sJ2FN=h1Gu15lN0RPE7JPslrF+~t4d2W+zi+-yzkiR9wzY|Q zxa@k>daf05-p265phLD-d8?(Qij~NM>xFlOaa$tSFIUj|5;5xOC>0MgG!&OcTR)DC z)h#%;Rnztp%7*UhbCXq_wvzfh4T{}XGF2mZaUl8a-)$^cKF^-Df~=UuaF*;byxRPr0<0sa`?`L7u7?tKsm zDH40q?b>6{{AT7iGe58Y&bQyG9`}J1#YF+_LKKh*32l($@RBM4(6dh~-+9V@_%V-rXP~@$UBGW}8O+kGg$$uRJAL|%ce|w(nYprgM@S1g zr3|i~MwP@Wl8Ou=ZKO0a_}&Y<2mzQ?8ojvP;VOsDSq7=nHb#))fDy0p>{fTsd)$wr z2t5zGT3Kpwf35FJw+-jO5Rj4;<~^nXg+xPvdJu%wWiZDyH9RTvqW1g4f1B$_stZF@ z0g}wqf~nZ$c!}g-xxzSZTakmYG%vh+aHeAPND9LtAwi%@w6=!P-JJjwM98AFX6f&K zrWnmgrI2x8lLfSUIkiQmY$jq7Q#JvKwr)Hbk1;bvR$?~r<2eGNi2IR-Tup%lt}MbQ zV8zh;&52S#%nF5+sTy_ArVdCY$Aj>gJcDsLE40XY51`O$&m4D zU1Yr}^E_mT7Dbi!xyFr}BbP}2s;;IK3u?1_5{(8}1_n)%MZI}<&~%i=mT89)751V% z(?NA`dFyE@S>@oOx7=)4%D;1W=hA0k>qP-qn|Dh+BK&R8^O{1 zRCB2v41a%3%dhI&1t!KG9(OlaF_uaLfpZ2$#iO_GR^8{S5oP=QG%|g?%V(6O6bU@p;9$%O}lE#JbmMh+pT8_p?YjWUwMdy zL}mg;M{-pLm9XK0m8;FCUXe@ E0O>)1od5s; literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_066/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_066/afni_proc/_report/report.rst new file mode 100644 index 00000000..21b163e2 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_066/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a045 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 066 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 066 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.078029 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_066/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_066/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_066/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7e600008f448e212423c3190136cbdd228a7a830 GIT binary patch literal 2544 zcmVb!>EBVPG10N<8< z>u>1GqE7|-+Mm(i(YKzVWX;%4ws~0thQ2v-=FB-~&Tzh&Kdt`t@1L*af9Xx%2@gUn zIDU+yA+j(L28dvRBw-jtah6_Hk9vBTByODjklp=r_I-9IT{kBa~GC& zvh>zz(@E^OPJAFtBNT=(I7`=e6W@xdksq>jElT{@@o+X?NzXlojxn3bWa=y z9v0uacnIDNL?1;VF@q5MX6S_2b$m?3`p|dGFbXU)9!Ehk8k=)ZM3W?gx7dnJ$2O%( zMMOu6;D?<=DEFiJ@W=oD!@B*?f2V8Mw+-q}`YTzIONF9bD3%TBL9JA&NkySrEEhMW zjH*qX2u4yj&*@JTP0P{?;=u7mNaYw(s4KdzcG_mE-mW*5UY0&|0}Hug;ybh2BQf?u zQBZf30&R;$xm+#Y%VFOCzHYF;)6qITL+P~u$5DcmaQ6jVGqw*?F3!Ux~1? zVnT2vR;tp2N>zM^4k}VS5h&oz!9y} zoCm$mgrCv89WCKvDmKM6zSnrsg|TZ>bl@T%%JtkcLsK6^3g=-tgGyQaHZGKe5^ca> z{e^BQt%j-WD?4Ua1)t6p^m&IyCT8Ia%-PO7B!sR^Mmhf~K2! zUFzBXf6lM0L}Xj4+0M39+$xo8uAhTS%^Pn^QZ010%hFblh3U|`R?wxnXs z;&2eq(xWp*3IQ*9BAg1Gv5yOXN4v#tPF{RjLgX0;84+Dm)On&Hu3@?$*Am^|fahQk9 zG&kcR@4r2}z4o4hDTqtmeF#iJ8gRPMqPQG$EF7#9_=D9^c~~>l$(62VS_u;lN{f#Nm+P zc!ZXC#_7*^9nL;r)(Cy(1eqMehs;+_DYRxx9!wbKV>=eL%qhKNc#1h+p}~R!V-s>prcS{_&Hp7uKS~fxy#mh#7-!3tkhD#iK z4BO$mQNeadd|bj$kXXax8dTup>9ICH06toLH#Cp=2yKEUc+p-^gPne_r?d@@8Z_Ja zQF^{-!s!oO<=P3>3WVg+p4v0|bJw<`p9*RLU5_7I28aVPCAD9`jB8+{pRFSKeEEmlO!~4iATc~QH z;se>N+^-a?7?n0{c@we##%IAlyJe%oMm5`0pIcp@@8d0wbwOJ?{sOFZhZIMl3==+5PBC8$av#7 z`3*FvQq0CHL@3dQ^M?!iR?O}Kq%d%*k8 zKtxwq38-xq$ocxb0?I%FKY3=DYRd#V-Pb7RpY!NXxtfGKLZ{V*QCIKq#dsG=T3otaZP#Fr>0kpULWk-fF4up)Ej17-8EETwT9BB8HHq?krp?QUcYUq5LI3i*G>{! zO3i7({_e!IuU;pQUXM5K>|#5J&_=0xcjNW*H^1Jd&A8ti(pb zx8PmAG4}sPDDv;nh}Mh5i3UUTGu@0$22q<8s%z%P`~ox<0?GuFtn>^CfIi6ZYNzSuoKF z58^SLN=dpt4oK`H8pa2n2*&5f>*;z3#SX^cvmeYh1gm1nLJ1DKwJ^ey{PE}ZM?C&Oo+E5K5q;&EWq(P}N0@l@5Iq|Vhk0k5 zM7|Zk+0srgz{wEBKk>v$fXPI?TuT2 z3V-K`=wf)5wm#;ijR{32 zj4|@e%HEzV44sI?E}mdG>@RWtWU2l!)~T=JViqY# G6#xK2EA@{6 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_0x639864a150a788e88be80d083aa4c3d6.json b/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_0x639864a150a788e88be80d083aa4c3d6.json new file mode 100644 index 00000000..688743ba --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_0x639864a150a788e88be80d083aa4c3d6.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "066" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1e2913f1022e93d27fd8a59e1e8b9edd531111ef GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9Zzt{1$=h!~Rj5EE$T@-%sb{!uDx8(LLbhmbRw$P)D4>K{fw}YP z4N&LZAsd7ca}q1xik9K!wMkT=rQjiiyslY}MryWyTv4 zf~l(V6s5>=v9?vz?j>AcDY5Zp>+3i1_xDUf@qPUD%ayJk2VsWRh)Cf{v9`RD@*2v& zuXDIKj=CZ?wXUV*Jb)i=^SMQdK+;ms1;j*uS5ycqO}(o-C6S?TWa1kgeWO!-V?*EA z#5X?r#;5uwhQ5i3Z*ufa{_We>=*V7prW`LhtdWgLfqqOmBnxB*ZlX{*t(uyMnW)kkK$Q9!AC{$aol;3?q~OKWpOG@phik@qH0 z(x=v#`ddZfLzf)R9zwS@dsRCW{IRzNU zMB3Jj5~P-FyL)};*zR5ilS#X~=ylrNXMag+NkTa1{hDgRRLlq`S_&VLE b94|0|m0yS;2tUS&-!|SKcHGMn_y_<1;-4VD literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a09d29846d444fd199178b982476da07e4ceeb05 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@Hf2X?j6B40{mV zhuB*x%a^+DhGHlXv?#V^5ADOS)F5c-*kUY^DoHs>ivZh8u>yLV_OSh<{fhmS9a6HL zq{y1i6@o}456}0V!;kdgFPHxK=jsLfWM6QW946oIo+jR`(B-$2E29ek&5sV>1l23OY z|CncMsb-Nn)p?b14RSzzIBktCi56tQBILC=ppnA&71N6pz}G@zDC_l5#8BUhU?8OK zBS~YR*ekSMZgg7Rw&!^mzUh@hV^B!Gou}Cf9Dt961h<^8lo3lv&<~Q(GBt3%q$&*3 zI4R=3a}uu3sZ10R32-u5AY7ES5GRosbSN;HE0{!3n#M_<-P{v>jEFN8LO{%bND*xT zv%59|NC@Les?{vsjY#-3BG#cFfcr~qimsxf;kuu`WX2E*{2L6{G{O-6`7TrffruVY&8~~nT04f&Jt4S zM-UvNr%*N~VG>@Zz`^4j7p^+mLzui}3iW_RF(exg4a2qIu zB-8ztXO;47nRY4HY*D5U-F<0Xn~;|ur`)#zPEVOnOO=K{XV)g9Pfgde1pJxVD%QUHf{~!RJnC?KHNXa)M(fIK?oF&2DuP z$^)t#{7VAI4h*D-9id#Khl$mmVBFYxj@cxrL2T&>0xw-EL$obsbq!%s*aR$k~z?G$+VwYysp zT!F42=#VmQ-jPtM((Ad;k462zD~PVJMO{7ADLaRhmLkD zuaCZbeKaLL5hr@+S*uM;YO}ZHygOuEZT4yo&NYw@Qkx(;2-$lFvT-(K^K8iGJdn+^ zAzNodw&sCsoekMO8?yaBAdNoeQ-ksFk}K&+tO zbBx*Y^eb!J*gkz^nUl);n>^;&+I*omx12&*k4>Sn<%D=%f-G7m)pTA0*7#!*NU*Nb z)ylTufQKxWL8V8mlD$p`3!4d@Jp1MxWqsY4*Rfc`%9=*?KzUx{eyd%_5|j`vvD#CU z3Xc%1;5u&0ZRTk|+h9X3BoH|8A+d$j+w5{t=-b_M*w9OsUES%al- zMb=6uSmmx2HyuLdP?`2E+$&_C;l<0CrTv&`ZK~_H*%IEzVlwRKPrm*8PxJhhEfa2o zG+bBh6${H{Q{FqB)`M=RO&j+-dcWI+ZnqCzFYvl8O51)bK=G_wd%VMyX*Nq3hU`rq o1|i`8K{$Mq1IEAs0yLXkr7*5VtK0m$-L&ui3xVfGjp`2o08?)2lmGw# literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_report/report.rst new file mode 100644 index 00000000..7c8eef83 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_066/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a045 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 066 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 066 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012534 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_066/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_066/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_066/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d70666d6a774b6f0660dab1f5bad1797eb734951 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=3Q5IDtrbUXzm|rG9TehUZfWVT3gs)%$l2YPM z`ku+bR_{ zN_mmnDCWcmg_xL)Odn(%p-D;M!`Me-*=GPOLjK6Le{O`8vt&URdGyn&Fh;-L-{WyB(u_PQA7hR$+V zd92E<-6wJMDG!&I4>9uj;%08ExXGWOQ{Qw3JSGWR+LP89Ff)q}d zW%i09|8B?MJ*~>nF3;(!97Jexw z%U!wJxs;T}*SWY=m(`>$<#_);Hy0Lsypt;#=1wlZT@Xu_lYnB$9`59FCC}UubK8YN z3A;)EM#(q_J!3kwoy(VW2D^TO^90*dx0~ByzJ$Y_85ryoa@%5|q-!KZFix66$ps)1 zfP=(RETKsBJ7}18!j@WZU z17?2D_EPNiY>EdA_9zYpT8bx({e-n)`~#*9&!HsnXbzuIu8fhVPiVh8qL^LV+^Pk} z=!D`iVz@$sF4|=lYI`EZA{&lrjND#|zYbF9giJJ>Vhz*v`!)kd)J@;gsr|@g`dLhU z4y+U!6i##+X)-oae9AD>nbjh@&tzf5V48GI(`VZx;4p=Ki|MyTjbhVau}K>zjFDGh zFm>b(1}XNb`B)nkJ6hR6`uZ}RqkDot{_O>c_wv~Zn>^jo6q9tlM4nu0u5_~Q*{is zN>zOZswdGli<`L|=!3h@%P-&=Tv02M+^&~FB;1-wfh@?kJ5&L*Wsr-X9Uj2*pFHsF z!=o?%(#KyW9pqsO9T`w431^iEN~sC7OSRT$tL?G^`f!^uwcRt*vNYba!hz{veqei9_)ks*LjlI|DGrdGg`q&R zECh1w!|5XBs?u%Ky#1yG33{KEal7@h43}+@2rl@Us_geBpttO-uu+^z?d3X{x7s92 zAAkF8DljdCF*%TMc$oQPa?FwI%5I&g+fQDvZUfyS@^+C3tvQkPyNeg4+Ia>C0mx}7 z&*dM$bzWjt0Zll4)SrRwe+yRh9xVZ>DSqVeBJka(iYhf!kkj2d(fm^#{Q*;x za7Jh~+A!pem;f~wcaXM)TXqjNT6z!YLjFX zlKEC{b^_^in~DUhN^0WXMPW;%IVsrt7s4JKh7S*inbkdHxW1MtY_4SvpCA1plT=aS z>itVql$;D6b!$>{uT@dIojTC?(=Z4;T;h3 zgnD9kmn3pkv=?rMg;=%(p- zVStm@J@58s@32%H`0@VP^1_0F`kDE+OKRV=(CX|3)OyCy0!;;qYo*&6`1^cjoyk`+ zvk4h8Au}B|ZL&pVJaWdz8TjWJnPi~vyLQIK9I1wLt7F%6h>hzVCpJc3g)+%!c3>80 zD$P)JJX(d()pHW-nH3DuQ8ff?=+o&mIb~cw+(Fi#K<^nug;mD=b0=k?T zSX%>#yq%T9U}fz>@EJNdSaBVUf)xll&`gK?S}w*bM@O8(OcAchSGW#eA>}K)Dc{01 z`4+Cjw~+EJyeVJtnta9U@D)?O;*aw^pF>8bge$;t&xZ|X)pQIr+3_`JfL3$sB7_1> z7TOL@`-x3*^9a6kHr1*b?B=vEhngCD{w*#BI`EDPI$;@j*f`v;{FGk@G2p>8~^~s4U1d= literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_067/afni_proc/_0xca08fca9eef2190364b7897d017f5a89.json b/Afni_proc_through_nipype/_subject_id_067/afni_proc/_0xca08fca9eef2190364b7897d017f5a89.json new file mode 100644 index 00000000..31c65451 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_067/afni_proc/_0xca08fca9eef2190364b7897d017f5a89.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "067" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_067/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_067/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..01d1ab9e4c91cca3af583392673fb257b808ac2f GIT binary patch literal 306 zcmV-20nPp&iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{$UpsZ(cnKdl3oQW~y28k0jlTEcgI9#@F$Qdx6fNaa$tSt=7=^5;5xOAQksB)EAdVTR)7A z)eSheQ`7b%%KGl=bDLGIwvzfh4T}9%GF1ckbt3ug-)$^cKF^-Cf~=UuaF*;bJmU{7 z0j~x0RKLQCTH}Z|porlH1Xth=L_CTfs3h~{@}_FJbzZ;*L<|=Pd182(a(&2(lMOSl zd;@H}PH3w*9uc@tpWck&q@FKgINyI8!^32tw)~wdDll_(eZ9E7!?COW0O)fTH}?Sm E0IVmKod5s; literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_067/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_067/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8f0e862830b887549243e4faf03c51a5900f5679 GIT binary patch literal 1293 zcmV+o1@ihIiwFpU%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}wMYHvLeG5D%yD zl1O21FS*_&AcQKRqKXn8iuyoRS>D~*vvXd1vAuUmQ6=D^qLSY*5AetE&VR*tckhEp zNRil+Zr2`r<~K9HnfdAZ?`-3}`f(pgUS51lL37DTsa5LTCSe>j)hWC1?t{lO0kKT0YQ#umz`JXNXWreK-;8KH=zF)G zPy;06+Pjs=yBn#JIUm*5)`S`%m}YTns`NM)YDxr5Kp?cIr%%51ZmY6fm`j_txwN2j zn!@GNsFGMkaxM_kYEFg0_jcGt2#{K((TiJMrV8ku3CNYU34#m<41bMh*L#Db<9-~+ z=y}-H%2JE_D}7(N4LFAs0V!Ey-cB{3kZ34T4}!3|3g%Kx4a=&cZ2bQC-{!iK>e3KZ zf+VxFU@Ep4ULplprZA2hmKR_wElTh1pQ!{rlH4%JND!zBt*t!5OJjhNa9LK?Ed1RO zDy4$d3R4E@cn6Rj#Z5+aM$pkQ$*83UKj!lLxEcuvd;*#g1Sn`Sm+sWD z4Cy2oJQSj&9E;c9-7{8|L`jT{HkQ=q7RWA1HRwt%q<1S5vL>kIh`ywjEjjgYcD0gY zsiu-lK%0>AMSQ24W7?7B6OdG_j$&pe+J%uT(-1BSOZqO4FJ~ZsiaO zb3Vxv^!%JmDMt_A@5O;dA#)4kjh4!77E1Dvh_-On5JDm#TY_hhHX&ddeyBjE$oQ2W zvfflh5i&%}vd;TV<7&f^H%R`vt|k-3#?I`mt6NM7x_9B|< zpgOp`{-ly=?clt(+-OYLhv#>=x8vN zuqMRzpku1!3~71L3A74Z`=4%h@Zm+M$RG}_2$@;$wx>Vu?BdraKfc+G8cyxCg8kX4 z_EHoKzr3R5SIzAb6Jz&wzf=--_ct+)?RD?Ixk4LQ+UzbiEzp7tUc5MrYBskmZ)*vU zch9e)Jz(v&*SZ;UbOPBzI|;qJyD-s3^sSrNB;vsk^E&g^yU(s{5V?wtg^F%w;Z9VjgjkJaH#340f&?B!N713L61T%gQfVM?o#ss+S zw(HDgZu@bDbEs$RvpQJRtu>S|{?uI$r;%)|Iz{)~78xl!>!H8mvcX#~Ps6fNT|52a zDo+2`jO>y&nm8#5hO@ggWjC;)=upSCO>-eryeh*)dgnHS%&1CZ`JK8AY&yDbK)Bdh zYBx4>=p@DW%8XxB=JpsrM zdnfVHpq~tnPlg$iDt|\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_067/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_067/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0cb9afefea26dfce020f7da58803f1dc6d11e510 GIT binary patch literal 2541 zcmV`niwFpU%z9-4|8iw>b!>EBVP=bW7 z`_$jihyH;6mHveOg`Nc|?&{*yFVT#K-<~~t_MEe4vES~WR{!?TPge53^h@6fk3%dt zevG3bvM><_h+u&vVHiYlmfliNdwQ58Zk+v?-T!m;Lv}A+HzznEPT*(Fhbs$n*Oqp& z^zKE|N$j{zd@M{O6oxQ3OV{@k--@Y`AG35VO8nUIa5i2^uRMZ|F`MmuYieidfjAC4 zEWUQ}5WE|RK8iwO1|jy%&9qjIQG%_&4WcZ)@mST3y-wTcb-;`3&d3iU zY$qY4`qp8iX||Mh-|Y63ef2O)uR^bf3lKdWrK>NLEL|;1l0+pP-DuZaAo(PW2L-7l zm!P94IFUn;FodaYH~Wfi?5p}?v(q=aeIrY+yuvRfFH3LgAguR|$EM!ddy=JJh_JF^ zLU1Hjs?s*3{sv(*HSXr1Of z=yfLinC9(t2^UkbDQ@$<#`7+WU7Mm~7x_@GSDqT0`Up}u56c-;%Ho^2P!dYC0fY7D zx}mfhrgEt4nOzlpx>A%kC%`S#LI4rdDq^p;lnm^mU=(9R;U9Ns;1_bT-q)4hg`})rX5yNrn|WR8 z+2Mb#uB=34SE||0u2kG9m20k_gG$XC?@CfFbauBYhMd7igH|} zcyzMFD6%;Gn&}{>Baed5Vavn3ABX4E3H`tFxc%9JjVxSMyv>9Uo2JRswK-sb9=aj%(8{5CMs^r zW@W2VtYTE!wB=360+73g+M~?k47bbKk=owN($6lkBgePg#0GlxL96q^Y__^)w{8GG z+~HKc;KXrVB!+G>a(p6=ys!ZO^fEA(p`RR+7<&ciijnJLpkp7;gVYtH-(`9GMGX>k zho^CST3v@_Tcv~xe&#Iu!x```uOM$$7F2s(1NBaqX6duiq+bWRr^?3!9fdqc=)G*bS33R%zQO-Z-(I0U&33r4}s|%xU-Q$b#K9tIB2&mQ9 z3}E7#^0ZG)uNu8R*!c{4Os!LIm~D06P=VDNN}FaBlKGyrxPkQgZ9|2q@|w7Pp4d`q zP7C&T=cax6DtY*7ym4y5mMa#MFMR8f92c+_vI?fp)}?DsTq zPa1G}pf`gHVRpWCy- zd|k;HMOcK-bsVB25zpu?n#`p&ae{IW-`35lV{TP|I@tENEigJ=po1Du5&kG#`$%9epy|gZ`I}t*rF!vyZ^Ibq7xp+ zV>p$PbbTC<*he&sw>%Myua4K#^$?03jKOC|)*L^X6)M7}K;Kd%Nf=tCsxaHCn3Zy2 z@iTSeabX0jV#z{@KCgrkp5%`|U%kWQ59B$*wiD4;o>}&n^lF5OM-S2WgW)jmjFZT> z0ytaR=`}bRqWCACc(%4AnZAasoxXInlR}0RD_ZsXHaR^VPz-SN4|w=TVVT8DliIoG7&=A<3aM1o{D4x}Vv9sN}?%7w%-Lh(HwI$2o?}&967V z|D3(*&Zf1u@5_ed5>t{1$=mCnDpa5n&w(N3>GUE*i z!9-Pgic(~`SlKFS_Yy9!l-PK^@%5YdyL%>~_&)yj^-5QdgD^uYM5OSfSXo|4c@5>= z>+CO%qppZetQ%=LkKp^;Y-Uj+khBzZ4l&W+6&1otQ}60tNo437nfOKr-{@H1*w8mN z@r@6@@v**%p>Ja1n;d+TfBW_|IYh+_mpdS+s$sE~%nC;If(besXC-x)~J&jr7n0H(yd0R15~X>0;SdyfkLKFkl`>g z8b(GY$Y>ZD42qsL{jDPLsY?#0k5`u7R9(OR=(RPvks}xEChHPb0=ZzJ_9f!GUk|70Sb;A2lmd)n zB5i9*2~tb8-M-y-Y`3q2^NV(S*6Xy}FaCno$X`}S!R4(_AZH?@43UgshAK>u@O8RR bIi6zzE58sy5MIQI-!|S~Y=b1z_y_<15dR&t literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_067/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_067/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6ec8d44df5879227eda29424930f591afdf53d05 GIT binary patch literal 1539 zcmV+e2K@OSiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&X?j6B40{mV zhuB*xTeh1v8;YSokfPX@J+u$QQiGr*%3>^$DoHs>iva6Ou>yRX_OSh<{fhmS9a8co zDYB+>g&-2i!*jlK_>unj>!m;bxpu)m`b$Q$ql~y2%}7ESaS7|27vmw3g}$^4@8b8O z@uoN~>UthAoRUJX27+KkkW@6y6I$qH6jLIw2;!qcfBraP6lH=3NX3HZ{TP)|3VjjL zu+TS8PIqx@vs>szA4`HlDhfU47W#6)Sw#Cb?n1)*0IO`Q9&j;;5`KUZG9(Fre7d{y zQ=wOKMH6|d^BQG}hzJMdv^BUyilc}ofNMU&iG=r6(+dztptyikR+}+TNpn9T5f{n_ zkj6mLS75v7ZFU}ZTdfwPZ+Zn+kQ9LL7P(#`ha><%oLS6QtBeK7zz={>A~)dzfn^-# zX;$Wa_hh&x!y=Q2XM~~A0>PrJ#4rh^M8zD6xdcTdQsFc!^sRmFLq?3sn1sj-@EoGe z-G@m7LNY{ImMb~QcP-%oPLOpN#3UGuq1{Na$`Y;;>LVWq1HvHI#mD_VtW1{Vup033 z0|3H+`;H(f9};9(GcF$`Q-QvyEON$3K%~Ut2m!VdO%?LCg3cI=5J92?6k>%Xe2m9$ zL93q-Ln?wp1OOB4k4M*REzNQwC>{*LNH$1b0o|nH8R85oBcwvsZi4L8s30O|lhGTw zG^>_iMFD+=RXml{ozc{s4H!RQXh?)KOFpUZfuOMLuos4eVHQkL?RtgQSORkqw&Zt?4YU3;b z1V16+6g&yEF$ELkWlmTCjGyy>^)gRWvqCt_?7ELU&X*iH2J+i|HN>!?7QA+AYZJDC zgpg>w-wIu;&X#ePbj=o}>c~A1#lh5T&`Fe|DvytMxUClXBi15W>=zW z49*cz{QPS1!iA7T&dIaI?(e$H{e9r%hGRHoYTfu|*@5S7W$k#|PBpESGAD=uov+uP$1g92L(p7R;b4y}R(y2Zg4frJ4quL8qYn%#ReeLbl zIFm%xAZQ;`X5I;xvexUl&!?ueXT;l{1#f$dw|!o`of+|VX2IJTW7*LRDoE@?=OUTaIA-iXX?Ea6Ch99%B!Fc#YY%s3Q3;GkW;iE&&&W4W;IXfFZ81e)I zK|z1u7_;*9YisOnpFXn8NoDE1zfkKNPRXntBUCn=7|u%~%GOCXofm*L{*(YR z&{e8l+vbeGAqz67@(3!qwfO*q%?M7RzdeVnZyNI^h&52wIBABm)$$&6x=oOv2q^(- zPmUBGLZIL_-HzKXa$m2}KI4KQau|@z3aNMcN-6a1ZA})vq8>+aO!U=Ca*zA zurAvx7RY5I?;X$YbRPy`\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_067/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_067/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c2d083c02cde96e8b81d19c405e97dc5ad914182 GIT binary patch literal 2845 zcmV+&3*z)2iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&apDgq=3Q8HB}rbUXzm?CKcwB<+|3X^mx{&-upE;&? z<{{2>0_68J9bvAkVZ`Ck^ISiOqr1{XTB1@VvZ+TY@r@oKcJ4v~*d*NJNn7pCrR zrGDaQ<+AHAFfB7U<3_&bc`!MSmiIzO4~UZ=<7mkboxrqFJXnZsJc5A%jrO)aGUDiv zAGkK+Pb|~}c3s}ld=IOxhaA;2J!F{L!`Tw>&MYMk0n{z zZ8ns46Ik3f`;O})BlIBOcMmExb-&u^sI7K&PdbRBn=oplEUcc)lBI8|akQAv<#ME_ zDJzZgKJ@(73%c1{K`6jLo-=(DYg`XP-K%w~va%=1kJV;JX?2u1x^aXKb9Nlvk)gBP zQ68&ubN5Lceage-^CdYo>XniK=7ey@0i_?EUZ$MpD4|iI?XfiNEQYQtX3qY2?@WG_$A&P&2i)C z?bh>39KAPRQb45MtW6fZOgld$d7E9rX($@v9y_YMXu;g2k#=Tj4%F<8r%GLV1Sy;> z%j_0K{@Wm1;0mMxljRq(Qr)kp)r0D;+LD0Njl8fS6v<*q{+ew`c@anJm-5HiVF345 z_Fx)I3xfeym&(mOA&%asSEdc1*{;${vs|m}tMziD2DJjWPDkcC%3gL0F8t#rS@@-# zEO+E;`%+RCU*+OfT~?F2l;eZ{++0}j@lLK}m^-=rc0nvzP6CQ0d$5zsl{|At%xxD6 zCF~~s8zo}~y2fN^JC`r%40inl=LxnaZa25Zd`IT$ne+@*Mv z_Me*`#VIlU?WNf3+7$O0>`@%_wG@vT`!Q?7_yP*MK&DM7`ojQe;cIG37Kd%#TusT_iY9ashggqQ~ROG^s|`y z>{}@`C>-lF(s*Q~_>5tuGpj{*kIBN2!8GZbrcbv?z+nn|7SnHw8pWo;Vv{yb86&U2 zVCu;2_fzas^N}`WOlZIBg*a_sZ=B*W_Ik6%Uts6mevm7D`S}chtUOJzYZ(;#W64 z2D_bhyV_6~X;5nc_y`$PPwjD8_(kClM4nu0u5_~6Lk!> zN>zOZswdGli<>#3I`2L&zkp|OMXgA3t6m0?aBC_BvLN5?PzBJEK`wrFbO_IX^1!o? zj=%bI4}X<(kcTOBWI&-LoK+$yr3TQFciYt}MEja|{XU;)9bQ4cZ91ULFsNtb@P(qV zsS840ebC#|R8iM9RW1KOP>Wl|{3g;08-}m}SpacYk=jIA%xSws9Z8MdIQsaqIx-#I z3Js7~@9sChQEU4xwN+L?A8s?IwtH?`md1Nl*f$-__iZl=|H+A9Aiy|2!vV6hFcfH( zg+PvdI9a4zRXQ!2x8IZ?LGQCNZns{R;j%3f!394PmHplr^p>3!Hi}cJy<7+LW{YI$ zDgQ#~it??AD38{p8i^Hqb31Zx@NsniE;SyLeHm?PqWhfSi`{ zTz(6#^AfWPXu|2E{tR^gTd<<{XbDIS3B>vGqyj_`f$u(5RB2xYIo+uf%|Fr6A22lu zXN2Z{3ufJ2Ws7kQO649bXunfeK#A9@Pdmi*qSEewpO0ZgtvAaRwIS^(5~y0G+8`N) zWWJS~oh`P73z^g|LT5;lrarW_1r4uCHYZn`@b)=f{7@Bvq8S zdjC=tB`1SNoto6xYgW`wyACw|I0ym{mv|ne3MreOYjC~9CqyF$M2^%uxLtZufx`ni zX)F@Qa7z*Lm9kP+C*974dzPDAS3J;s#KU$Sc-kqC#^flCC%q+ps3i=q8m84T@iOU| zU^o##c5Bt$PNn=5DnJhnjr$hZB{#;wKi^tdc+Dn4O09IE`ld`Lb@;0d{(78Vnf_Od zP*3a*bD>w)HGMF52`&)8X*&h@6~VMC`rz`x!Ryii^)9(%8sZj&pY);^eqK zIjk;EZq?d1aEq#N-~Ge|<4x}@7{F60jFty34jhdvdAB!xho$1cj}Ok57ZwcE%gn!BQhTO_R;MqZ)-#3{Xev-#E8Wh(-{({7Oumwt zPRNi6naQwelPx0SkuyHdz(3E(Bm+I)wKFc}NHxr?PF&L=Hm-M)*cd$($|RrJfmxub zG(*+#a1};ZXC&4$D?lv!-AkUVgr8tF(C}$?zowAc*<4;lL*xXQ3-EA-BbQPO=yIlD zZ4Dsuc26!Gad44xfrh;A9D&bMYtwk;W~VUl&|ond<)m) zTeuG2Ldv)BrhLU~@)fVcS4{beujf0PLq;ZqE5LEjhYe@dbPP1!@inK9R&(njgaS<# z+73?pisITD>w!ET4s*xg=y2t`mtTJOG9^AMPVjJ?Slv%Z-9KK>Tpl8>?jNsZU@i%n z0cx{|83=iNDP;cYkiyj=h3kYAt`1qaI%MHGAq!WB6t4~`{vRPpeO#{^h=*UO8i=bm zCH)Ik!_N+R{c8BxA+KKzKN)ha0t5G_wlVT$3I8cE&Q~sOS!Ab5{LTKzwsrp~xWAs6 zRMwtmVYHqZzeA5Y5S1PW9V3P%%GW7^@Cr8dw%QHIUTVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01i4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DF+BN+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z;?p7lEI_KUxuHS(7gQgC_g6Udp!C_^M;n4t<2Bz&Fj cQ;z4Dz{)Q~5QHD&#BUq#7JT#cLih*(07c^*v;Y7A literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_068/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_068/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c7495ad17eee7940ad0cb0cb0aec22087eb8a141 GIT binary patch literal 1540 zcmV+f2K)IRiwFo)%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&O?p8)40{mV zhuB*xU+cOXilIP|qS%%_v=75lgPGSw?+5I!?2wY} z#6{M0t`I~bd3eru4nNW#f4=nlKkFClqd#XfJxYn2(v-xM5tp!mc`+Uknd?it@XmkB zYro{jc~vhWh7*$OYrY^@5hN8&vY6(26-AT?Ed1yw*PlKP8AYk!K2nk3*&sqilw4m# zG|2VM)6-qtY~0WFvWF!>0TsDkaC3dx=PaZH8+R$@1AtXDt{reO3}b$PVlpBzfPA{U z^FyxJGDTxK)45KWA|k{-nY9L&NO2U>7;r6yIF|6fYI*?z@f8=4%C&mL6H?!gNyvrr z0HiUH^cC1HH@od#r_pFY`leTK1xW$;PM+x%a!7mt#F@o>wai$M6#M`PB{CDv7g$C? zmZU}AcTb0_Gb~bxcuE)=FAyxsS_G3&LR7?|m@803A{9>3T;JN~9%RI*j7WgY0M8)W z0#tWxNJxq(OEV>>`EJDA$1$=F{fPL(3A7stR%y&tOg-dbe@Ga_y7+i7fR#z(3|0d^ zz5_rQaNiLm;Uj_!YbNERM00F=ldy~-(TT8Q?2#N=TFp>`AS3ozZc#1fK$_S~DwVNWF85KliY&v=) zlV;UotSF#Qv5HP4b!R*^V?)Ld7#a~F&5}>+dmtz*JM4uKVVLl*ciWv01So6WG#7FSLL#hojJg%n#84rjX$$&4yu-S-ENO!b_%C6V9kvh;rjB z0R%55!3lU0Xk!W{$jgi{9~i&T1lG$eNz4l2G_~tK_PAJZ^i2TP_%NH&LBy>)nEp~rbW#;VzC$}8KDO2m(SE~*@cS~!hx$Tq_95cZwhG}AU ztCM0DVCleL8aQ?!6g+XbbPXTIR{NYXW5d&ZYZHVBnACJ0!7SGj)|aCyj8?}Wwwww8 zyZ8FIZZfGC-v~%Qy!ZW+=Vtc3MiarQ#gufF997(c*wb{%k6H~rN&2YrLRD%r!OO3` zy$WZNs0sufV9Lxp=2BMrefRl^DXls2w&uaxn&54n7jJt`yzP1LwkLSo=f&HZ6K`i8 zyqyW&&VS<_&oLtf;BCOTW6rB8WdS*SBrqG0YGbPdp?n@^36qn)Zl_i|>A{5`nY~6I z9PL$JAAj-scmjM(PVmsTR+|>oW`E0hcgVQf?AIKaYeG5zZ5+{oko|W;HqQ>(Iy+=* zo{+7xL$=Qj*`6n4`|OaNvqN_NM@Yku`Pg7Qd?Yp)SLX%&k=XFTA?Ihq2Zx-W4et$k zih-b@-*b#vdHSU_Zf?&WS>~j&{>G0vwl-g=%`K;3){YS>TTTS$B@spIG@H%~z#4x{ z04eAyRjq7uM&OVI8B}@%mE7p|K-i4ogN zK<&w~!b1oYT-R;8tvvJe1|2Xi2qK3*Nv)82tFIJ7-`>__-p{L17)3;1EhYD)UoSl? zZ*W*I6*@-dyZVx`1C15E+=Zm{8X9mlzB>F0%>t!u?wV%d)TX+3o>b4eAJ$P>L%1a( zC}Mr~nz;gES{My$1Ir`k!+d6LV{i4U8IwE{AU${W3J7jt#WyrIPDt%SOhfAHGr^z) zSBk2YPC(_Z6*nD(#Xy?&ZP+X5fWpPgm}Oo\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_068/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_068/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8ad3bf590a6fc57a2d34e5be62f7d58c52de1537 GIT binary patch literal 2851 zcmV+;3*7V{iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=xQ8HB}rbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B1-OFxS&C;&AABt{=qFUFm$JgK%gC@elFZU*nhYYP775kdIB*iE9rR zX6|mKe&T55vgJoL538<+9Mv;DWSI`ae7WzKs^`198Vr3m91PVd6JEt(?-=QU zY8q;;xW(%}(gLJnh#6WYkTF7EOUTr|`u^s>|M4H~U(phB425utekL}Gt190GnNOvvQkE3@U zOR}=tYAT%;u()jw9M?xi=s~{k?pJDRquT7M?M`)1+K;1~FlwVLte(u0rLU`Tw3yH3 za-^pvE6s8PdVcK%y=+btL>S0(rf*`6>qDq}wQf~b_9XeS+UhFpt`bK#4$(o*j-xv= zbe6lyV^wbLK8d4GdAPiMh>_11H**h)oBRnn^-X8MW0IhyJ-PlI{6M0?$mgfo>0>KN zBK(d`Vs?AK(W*#$Qne!k!H1^3WA;L_uu4^aqO{uTEYH9rSr{y^T9K3%B>Ya|mw0nD z$Bm=6+s`X;^xk|)0g-yEHeK{G?fj7B?feqXLeUWS*iq$08|E&JwNp!Tpk{A8RqE0s zNa1u@X0KS_zX`G;Cz1wCmS4z9wNX*4`_)~wEdi$+d0|5+lEsqzwK|gWB97KC<&U$& z0Pd~q{w$Uj21Bkcm0Np49KBDkOb0-#Q>B+?xmIbY^>VWYwF0+JSLV9PUUmyE{Nol` z_@$gIcjap5Qc@OQ<>FRdR+GAvqmoMoIcKrnB3AU$hH@6G<5)OA}V6Y?RwhLlO*GPz9oHT`! z3!p#%4id{k2~CpeLg@=G(EJ4F2_BrKSo3uTA5$BR+E_!4;M4Az*Xz>|dXcj>Zp&!i0|drU%fjZzz%lo}pWY%myMgN7ZM{aI+5pCG) zh&?wnVCMI1FU4NZrg*?$kK$mUrFg>FPgonqKVaJM97+O@=I|Ni${2b2g!a25irKZz zty*A=PADEDhATAaqFrX8wpXCIz=mTQBe$30Z-Nv$ArsA}Si^MvzRkc9bf*HOdYv{L5h89KGsHz3GH{i5T_07O;S9;UjMxDXV`hSALL43e0~lf83y%? z99}F6o4O$6)d&48O)co!rmE#12x@VwnBPR2xM2tzkOdHT6{$m%#hkWF)RENOjiZk* zt0U9VtftrJk0z)Ip)Z9Ww%b$?I*8Rw}EaEdAmr2)||-t&BcpS?L32n z0OYik=ki-{otKzZKod?M^=F{_-+~prM@v9zN+8acrxj2D5%}&?MU@&V$mwpKX#S~= z{(z}TI3u(gZJ2d;l`Y0KD3yD#phmZ@fD*4)pLU7sMWxdPKOe)0T5pvrYE#-%Bv7?V zwMjAx$$Tp}JArh%O+|uLB{gyHqOc{>oD}T+3t4rw%m!Fbo0@mv|ne3MreuYjFLw)HGMdD2`&)8X*&h@6~VMC`rz`x!Ryii^)9(%lUsPPQI_ET|0t<6?76PR+nQ-H$GJNY zae7>z9#)s9w`%QcxJ6aC?|$Th@uqhg4B@F1M$1DN2aZOTam6cw;mzT4wCq8#gEQE6 zgu3a3lWdXO;K;j_T#oDO;wCrQDyqdocJ?zigJE_6S49^%5gv3)o{vV!8=%kM;0+Mu z*++)ylUF^H`1|OlkFZT1qHnwXeli$@zN5SFY-vWf;K|?zuY1KKZiym!#dH3;s~Ps9 zo2KK10Zv}`yxX6>!%}hJ$NOi?3kwG7XXf87seRKztFsqS>ls4}G!-bWm2PL?@AH{; zCSS?SCS=Hj%yiha$rh3E$Qd7J;Gbt?l7YVO+8Gyfq#Dkxj$P9sHm-M^*cg2k$|RrJ zfmxubG(*+#Xcb0R&q=IjR)ARc+m}392|vYZpy88jqo$DA*<4;lBjf~_3-D-#BbQPO z=yGOYZ4Dsuc2*99m9-1OXXxNy#dR6|cirO!_Ut>)GX z5DGL|XgfIVD;Cz)SP$g!aF9C!M+Yn4zWn0bmnre{;sg&ziPimt)cvFN%;h2C>i*GM z2Ii8G8K8C^F#{owE``ir9a6YDq;Q>(!qp+gt3!&{2`OG3vT$|C!v7JH)W`Lzfq3|t zs)4wAQ_??EHT>j|*RO`39P;|r@S`E;Dll+=Y#SqAmhc}F<9y}fmPK}|#NYWJ*|zQ< z2KU!9)5_Y@ER5DOL)b5oKW)ud)0+}VjDJo7o^LwA>Pp3R5NxubQ)V7P?&OMF6g4EdG@`n8GWFt0WrbnpAuD2pErt}$O$ostlJu&q~BF5XKb+W%VIKPc77@ z{$WMMn^#Z5UPMB+nQE5&BT4rn3qC-O@pXJ6AHsIc(mi%g!#DHI@0+jV@883NZEa#6 z&f88ko@+&%w=w)MXp!wy-e@VQVkNTRI^i8*+?L37%M~=fM2vbmNX7jO^~I&p)(>N2 zbpy_A)wKPHvc9|c++ok)KBcN@!<&$B13AS-4uoFsb;&-g=2 zz$*bg)i1H4);OXKC}Ow)!4$hX4Qo literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_069/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_069/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cdcbf1043e277bd2036de085ca963112bd755f8e GIT binary patch literal 1293 zcmV+o1@ihIiwFpR%z9-4|6guzWMwXJYixQhbZu||rB%;w95oasv}t}dZJJgsLL64% zl1O28Hrec^AcQKRqKXm@MLmEj%QN$4?X1ThY|m~|R0%E>m3+e-;E&<=O# zMPgRk8T;9O-+S-#_kOTi`{2pUKrGX$8Zpv1@a_iTnRj>QJ0lwR9(%W* zPy;06+Pjs=yIZM}IUm*D)`S`%m}YQis`NM)YDxr5Kp?bdXHUQNZmY6fm@AWaxwN2j zn!?r9cqFlko5lbo;j*l(S;V^| zR7wS@4@?=P<2kh5g4$9jD|kW@nvOxDuNzNBBdkm*Dy#;6JV!tjaX->fs0on3m3jI& zEIInHT~SF1DHucbB|&Trn%3n*i<6A%j9{Q+l2JuZr!PK z8Olj8d1ypSITo+IyKk&2iISKZZ7iwREs$NYYS5KjSa&NEswSxAh`ywjEd}*xwzZOD zsiu-lK$}qVMSiE6W7(1A6OdGS|{>YeX78xl!)6idW*x;>)XJObJT?hU0 zIzj(ekL;2*o7gD{rn9@$Wj9bzbhyX0Pje|#+$uvydgnHS&8SM_^*eJLC_1_pARO#0 z$xS0D82jBTelYsmP3qc1F!bDg_rF33ifmdc)!o)awJfvztv7C~=_Q2fkqNr;5HAv$ za%^n@M3ofW+Mr+W+!}Vgf{YUX)fa#N5uQKYI+3-@kcrK@iJ>3`0qqQFHaO`)AM$>3 zN{>zky(AtCPvN+ioer~jfErh?$1d5{uVKl^b+V&=lE%lwVbU86vSFO|U\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_069/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_069/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4644bd92da6fa89e01c218ccc75f38ab211b9120 GIT binary patch literal 2545 zcmVb!>EBVPM~2`tIA@f9pUQfks^kDb9S z$gSrdd*~m~TW5OiKhS@rZ$XN?lI+x%Xhy@|zJ2@ly|-_%zuiBr{`mKgR`S2}bDxCA zA(n_A<7kL%Or-&$SfWW722q@)*R|809;S&KXFp_j{+xZE-A*^G363ZU{H%F@Wnu2h z(oUA%x@bCyiA&;RX&Rw0guz+5agg|S%#8eyrR!1R$Hc?gcqP6306NBews-8Qlck69 zIPkFi(#1pYZXo+83aJ%@*tbFwVwd=s%Jrd7tS|~}D;`HdG8$WRPh^WGgO}KjE#g?k z>W+*~6~PZDiBRrG^Xq^7__u%kXYJqVI`$otxs(1%DJtbcNhy>nW^t!h-l}cwNIN@9 zv0TlV+Jro^ZwU$gZ=%E-szcYuLU@c5^M)<5M}AR4>iNw@3hTc2fVmS zMt%@sCkY|d*N+-atEIO4R=1}fXh&JP2E86GK=f>sp?#xf>1wH1EHX*QFx&MONInYV zL7`Yy%Ft1gNJJ=-hA`EQW?wbT1I>77b^2zvZ)WM`=lEIC%hGEG2#TYiO)BjS%_$`Z7GVCYZ44kQ|sB6*&jA$9X4!tazYwW~+1PD4A; z)Sdwj-Y4E386+&QhH5-AJ6&s$XYeBr3<6Xen%RMbU(4+>Yd-RWEPbc@q>-iXpRFcv zMDH}`L2q#3hb(WWOSqVdPjN%+HJ^52?D`ZPyU2%fz5LkJwFi*Gd01pnt;pZTg|bv; z4H#@ZHB7bDu+$@U-|A}M)8&$~rBqq4EPtJzWr7nH z4J)rpBRl%<+R92q_lh-#>=jG9aOPdR z#Zt`{a1iCV#IQFvyS-Z})o8M}0HeKfako;g*@#UMPxGcy3jkCYpmDBQso_~ZT&aC2 z#VE>giQ&=75~Ii#@Jp_PxQ;tU9G_GKJQlFWm136u90?c+p}--+{SSCp zc1U zaL92yLQ6ao^k<@uU>`7Vgg$qIPR`&H?yH~_+A}T>CLD{gorzizlwNT>#e%QU;6VpM zpk7$vxFSv`G$z4diNB4P&`*TfJdP3N@kgEjC)~`?wYmO;2yzi~n-cZQGM8G`h2-%CzB;aHThpr&^Du`p^h?wxkD?uqN3z!=UMx!N;xcU@L z1Qjk1!h|jxG@LE*jE2M0#vkF!ySr1Yefh;H07m(0i38W+I3lBEBScZWY()6w64Pn8 z#IeV*6TTW1975x>5^;jW9-h@;0v}J$w8a7N(Gt6%dB#U*Q#8Sg_JSJh_j^6HZ3@(& z+0KvBwVnm1KX8>B=U6Kcl6Mcap4qSKmfAkd(ofGRL>O49lgx=R=$fi^2&^aPHmlpk zBJhLjPwG$M3~pEr&FJcNAPH9%RG@FhF z@#b&x8;+ry`#NK{pT3^m#J6){9he%hT2pPaj6yOm6&E*5LI3i zH_j7VM$K8l{_fng&z>jupN}_hA7Cel&}Mo2&gSzcFMhq5S5a>2=7lQCZw3$gO|5;< zX;}T94sQH*9LFK8$udwCRyM=Hk%qZVn2p^HC06fXcKuNUE)VRcvC0g?mSWB~>So=V zi~VzZR+_IX9is@#@VSmd^h(Avc8jKSX-%G>+`~6@^XiyenM>vvZUm6srn=v6)E`3y z*olLrZ^65KV;ueU(#pzDd_-8O)y`Gl!qa&j{%oB;pHHt%|7&`%s-~I@>YEBdu#S_0EI3o{f*wj~fsA#`0UlaJ|uhdmPl< z=lP33h~n|yg&SeMg;!g34fg-Xd8N@X2wd4i#1*b{*I>r^b$xzW-I#CH<~OiKE!cPe zXTf9=9>-%im6CL09MITDEQ~ii5scTy8|g*}#SX^cv!m$5PiBRxv?Z~(lwwgD+U0F& zcCTtxD}}|+l*Hr02v)^br2Kg$jPN9X{Q2T79)BRu5q3z#UU_EOU(&S*Q;!{@?*zkP z-Wey6ZwGL;w9_kaGDPuDJ@J%wDi!vbJ$>nFCxdj2_+b*${JH17;o|wqqA`3U{^{W1 zCM?WtJMcU>itlbl`J)-Nz@@vJi|41in+}Q*6Wys@-Go2lvCjbOW{**De&o`H_TJ_# zK!rbie@kLnMDguK$DLEH#UP1I{Om1felZ^%M#PVA-)aOtzIEp+1iBcWrLDJlY2!kf z3uBBtt9p2-NJA3Q*u@hJhyA;PKUr$LjdkX$ych=G>xfLS!>wEF^-ktfz!!3T5hkp5 zvAV+^^%l`G;_$W;GQyX$9EUTVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01i4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DF+BN+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z;?p7lEI_KUxuHS(7gQgC_g6Udp!C_^M;n4t<2Bz&Fj cQ;z4Dz{)Q~5QHD&#BUq#7G|s)gZKyl0DP+(+yDRo literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_069/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_069/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7c49dd84d000a346828061c41bad9607fbe225f2 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&X?j6B40{mV zhuB*xOSYFZ8;YSokfPX@J+u$QQiGr+%3>^$DoHs>ivZh8u>yRX_OSh<{fhmS9a8co zDYB+>g&-2i!}ERT@FRWr%auR=xpB!p`g2CJ2p(L|o_(rk?SRLL;@hhndN-Fidc{g`~V3hasw9#EaNaw zvoh}cr{S6mi%cS(5r#$!1dFl~!z7dv6>~`D5+spGh10CicMfKp0?Me%$ZF%4A6ns{tS1 z10f8&?+KFfAwfnpd1ra%$jNZzn zS+xW!3hXni;;EqSji%;o!1y6ULn5SE@=1OV1%+jYy)YyUvtUYUH#00?Gl4omO(toR zMBL7Jk|3Fw6$^8Lt&H?s3j}jCjCv6H5jw;aBK*YnjEc<4O~6Ypxn52=qh=whjk5q0 zdI<@q=t+=`NthrnbHV~p{G1P}mwB3+6~b9&*L~!1zSPJGh~Mt3A%+dL;J3W(P1pt! zAklcg6}ncPE#offnk`Dzv3n?tYZLO~Zq5Q5;P{leTB$VtS>GIuJ~ds>G7?P8u0_=t zoFk(6>DA(;OCgDz(`Sp_-*uVy4nUI|j?t9Kb>r)02cG+twd3zN)da^(aLQqtn%(MT zn1xt6@Rx;-9f$-^9WGs?hmq9*r_9*!?7-TD5dtOo&Lf!RTEPZ#SclR2h{T3d17Z(e zpEOM*&GH+8=m!sec=FuLe&G2CPA#UStK_iemcpKdQ++fV@JX^qwHK<^I0IgN?eEt( zlSI`3w2vt>?}STP>vrAeQ&Ut+w>9S5x+vfFjC|X(@NJLzwlB)JGb7*5EPOj- zzMcQ(JDOugO2Rw9ao3zzb;?3=^hjXVCv|V515g1^@|4MO-)5)LnD*epkIcT;1xNd} z*C$`RJ{c1qi4#0@t<}0Ewcg!u-W@Wo*1HV{<{C%`sErUEfb6~l>7NhTIv=t%3uNnj z$oBb=?O7n(=R^dm&FL5Gv^R z9AmaT{n8ryJ7o3&$hEpnQ*AyxnP7LQI5oPPNnl4Jf8h=az8Prv( zUfbb}z#$7|P~{P-WN*`4XGU}i{mli+`lc~&La_#wHBOqL^gMs7-DyGzijWde?a5Jv zhY(b7n{L}}6?spu(LUpXAaWFt%ob8_^|i9lx3@J}bc=c%#WB&>tCD-%uNR(GH#n>p z$~s0Cd-{s8gBmM-xd%b%71ZZybanU*nk7ry+%wJ6sSS1iBB7plKWw5Zhj2?oki_QM zYvvLZ)56rS7FZs$0Om7u8+)sl&6wo5fYNhMFG0aAZ1D|^wW(6OET$p!8)v{E1=q@~ zRZgJFT`6xm2#dZn?Ypp7&>@A3modwGDOJi;*KhR#+{aSX?-ftJ{rgYz{G}HWvq2iJ z%l3)|<+3U7osQ@G?T23QaBF+3wdMKk?J$UNd)p7gz~62`Nxy3C;SN`&*(_lk(>FyN o#svOHasN$0AO=QA2xg\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_069/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_069/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f079a43b627cbcf61b7e8df9c6e19ecc5cb2bf68 GIT binary patch literal 2850 zcmV+-3*Gb|iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8d;K^IChe0CuuSnj?&grDgq=xQ5IDtrbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B6}{_KAD~x#k3K?QrDs73yOgZNsS=Gn{C4;3Io}=}EWQQ)viSFZeY%kRMV~pQ zcjh6^bOPk}H63BDr(wk5(DPhBh@*Sb#YhL?&x0CHZpyfNx0sUpH%DhIJ(XEOoxYj4k3?nRhFezQ*D%+@I$1#mg~pSJ5MB8 z*=seGP77GvF$a$8BO~-6-}eqGHMLP~cGY&Lx-T8X(GrZ>C=076vt;S(Y8)-*bGaPp zX~{~n+<=~6dqFRo69o|l@|@|LSmXK->VB! zuJS~cTYFFA=u;jpFCSv$^Tn;)c5#b8MQ6V040ucuw7f6ZUw|J-G#L5(G&_B4B}s(e zu}RGC95h-LX#WFYv+w0F&3NETM9%1@P6Tb<<@cq9vh1y(DP(t?EFP5csXj^?;= z^mhA2C63;kFDW2WZ`G!YUZI^IlDu79!dWO9;yyd7yllhV<*{~VX%5uvt!GMIdJHL? zF3ao{3;Z`hR^&v|fXVVpS*bQEYW1MHr?w^FbSp1x3PrM5lD}3*QeMW<#+CeWb{N3D zl|7in(!yZK)unQ4Ux=gk>6PgKXmzUe(yY`f4Ygiw)}U74*6GSzSJ}@#gbV+qMHYS~ zCo5gK+PRXH#n-vGU6<9QF6H>(ze@`XKHklh40AV^-w_KX%Sk}7WDj?9xsqq@7IHhH zSi)}7zgaRaK+l*C?d0+$ox!f3;5@Qr!3CP1;5@;D^Au~o&fpVjqfr}cs8M`gVDON^HZ=+?Iysmy_}ry< zi}s(J9>pm#C}ap*K7(0ET{98SAr~|{)99TG45l{oSYReoUZ|I1-?LME!lZc2V8md| zV4uMnvlMueQ2s7mmhPFf!DNp~h^|p;W0O+DV~Pz1BW%#HBeOp%O<0RJU@)Q$n;o&| zh6c?1p6#XB>)8|!80=9T473za82brp!}teG8=gZ+;L#jDr(78$PoL0!cSJF}wz*Xc zjL|8@W5jTU23@qvEY$W26c^ZVOk?EsQv6MjLMLRR*%WJ-uHUyAIHGR)mQL+QCezPi z>T_VF(4cUl(@2xCk>WFkna->h*?lGpBL>r?YnndWCIN>j>|0E~UC<~t4HlcUampBZ zB7>H2w@b@6L9v^u^~F0A%H9ie1Z~*f$4h z!_)jAZTRRU#dz$cIIt-;ywgF}FmW*7!v+ZT{=5b0aL{j+ znKanzb~@Fj!bpQ!GkKIQbyRrzgI2kJNxFg{dFQ#*QM%>2T5Ud$qfagw_y{zt5l+=H z*eX@^IjEjQ+bnM7a-a|Hy(qtgXK+QWNOHSg29a=kCIzw}-|kWc(3U|ies**S&wuj3 zvyYCy{8Jx)nRJkcDRg8&p(LDDA}FOM(31B$)ha~$ig*11pJ*LkLB4G|pv*9+XXNl= zQP|Q2A+K)tA8Kkr*S1tGzb&Z6hsFFB(!@ zvh?wH-=zZ6LKu?+35SQ7-zUc$xvuQhiMsvd_3AdzEh29hiO`x8S--h_QL3Hia1el; zmhxQwAzbHWW);wc(?|U|=>E50MeorPkeU*R^Ob1@6hH*N`%F=#h6-}JTPK=-s-r(( zY7))}twtMW-CJXeaUDwKJ}juwtt+6!>(ysn;(Af(bivQZFrwC5<%-&r_7w?Ktx|20 zj6yQs%FRw7oo-W+U{y&?+`lYri8Ln#``}X8!=v!g(J-^Nj||t>GUC>H=IF)o?=ndh zC9dATQbozh;BmJmHTPQ;wcDu!jXw;7z{4e;2dP5JrtcbDKk*6C$N`Zf^$u>ApH|@T zKu#Kq#4+4bgnXr}l+|gsbLpPtrq>k@H6QV?T?d|a%A*N6O5S8Lrqeq7#Rh*lPOnY> zYeuLic89sttLvIRoVx^<2;j7x0{og_+BJP}`QYGn<$!vR+%fV~sjb%Pt;gkhJUoj& zsyyz>>0U%|xl)019Ms%r$r}Mr3x>N_PK3!Vyx1s9aQ}alR2ueN*Wzu>w3y@EU5Ge6 zu1^oEE7M!G_BGt1D%^KJa>01hI}3*JR0^Y&p^F1YBg?qv6~S<6xDu^+Q0(9gwjH5v zI^iT+Sk+*DOLjwpJp31h0M<8@+ul3C%{~QN2?sUlv+TS zGXv}E0Fk%5dK9d#UkW}$hli`KgHf;wK?j=YkYCHic=h<0QQ8gi}z1NXz|1mMnS1xZ^WT#5}UHp-4>%md* zU?VfFtbNVGXd^R({Sx`p)_gU+DS^cJ=Op0yrW35KR$K?cCJQ=c<`LvhuDDIUYR%}7 zlk*#VJ|pHldE=2B^9>AYZc8liAoiBsFi2ES^yzh<4LzijLuBO)G@+?0zGeo literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_070/create_stimuli/_0x53c58d1052ca19c53a1a5d2dc8c0789c.json b/Afni_proc_through_nipype/_subject_id_070/create_stimuli/_0x53c58d1052ca19c53a1a5d2dc8c0789c.json new file mode 100644 index 00000000..5219c0bb --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_070/create_stimuli/_0x53c58d1052ca19c53a1a5d2dc8c0789c.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "070" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_070/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_070/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e46928aa981febb9de3e0165d4d58719d58c7bdc GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVI1k$GS+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=%mSDO_y_<1@f#fV literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_070/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_070/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a6ef5a78e7c49410f943ddbc1c75f54e3106cad6 GIT binary patch literal 1540 zcmV+f2K)IRiwFo)%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&O?p8)40{mV zhuB*xUy~*qilIP|qS%%_v=75lgPF}m?^o=v?2wXd z$A#B)t`I~bd3eru4nNW#f4=hjKkJw5qd#XfK8=YR)0l*m5tp!@c`@!2nd&Qt@J@eA zE5D>?X<08Kh9i>d8=fFo5hN9jl8~l)6$O+CEWF?})t^4@GKylsJ){D`lU{(bD5<`T zsGsWF=cl{4wzr+?!)3dw+k0P^YK z!4IikOB4;|ROdQniij@u$h0-MM2e#>4FT6;7l#tw*G(@#AfDm^Qn^tLctonlA?b3V zIsnobNcswFm+L#t-BztugY-?W;0lrg@U1k_E98WD0Ejb-`FftQATjs>5K1H_oF}jh z{3MFAyzie6S7lhl67iTYR4foI%31)EP()O~p_nUBL?RWA;#A)`<{ik0Q5g^)nE{?a zv<0Z{TAz>@Q5Gjkj`Q6Jxrak!9eM%r`Xgw!BCO(&tB`h32YY?OAlBu_y&kMg944?D z@bMi0!hrjpAQ2xBWLPsQA0-okKFci<#)wCx#NreIwhT=k@~(o;01F>MqJ89Jg(ZB9 z#_vF@7ZO7%f_(%4L);mSZrECy{YB4Ojv zTZuHQ7GgyKeT-Ewk<`6nYQp-A4;dN|ApK(_mL2xOfH2Iw398+Uv4G74>;yKM zqKyl2JLX}CWN22*PXx9!(hChB%*mkJfy__P5L3wTlX}gt$gJErc;+S1s}X0^EJVI> zmHn_E3A8Z<6Xaz=m+kG{_u%VXfjoRK0 zYy$})(P+P=x|E+Sqb}*1ElSm?I~2yXNqPAoVV+HJbjn=KSsMJLZx*9ZP1m!Scw@6` z-Fytr5t07*YWdP7pLCt`XN%q6Wtnu2fsFZv64sN0GK`iB5L-?O zfIWD9RyCPavu^~X??3qd$#XONL9LG9)M84yN)AeHM(lAq`A4M!pCo=%dZ9{{so?q7 z(NT#rNmL1f_Aq7U9dap4?Y8@TVoGC9yp4JAHb!_G7scD06K``Kyv-5b=0)+g=EU2Y z2XAYHxAot6i#cW_1H2Cy56pR0rpzZNj|65tQm$>aAe6_$Bw}*Zx6`UrCOx?DBXd-1 zgQKI;>$5LjpN)VQY|`O5*t1^v$k%UZ4eu-U4D1Vu;* zPniZ*OZdZKvg+8w5mO&n5S$UoSn& zZ*W*IWjaQthx&@K1C15DJcOk58tQRXTpfOeW`@!>4^1<3YEwPBNUF2$hgFo<5N?SG ziddb#X0Cvk7DmI`!19!NFrS&**jv47#w1S!NY6vP0)ksu@ePfQ38|flX-Iv2Dj1aD zT2{5(38>t)?52aT=t\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_070/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_070/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4448c359d25e0b8ffe0d3181e4b4145b1a8b8cc8 GIT binary patch literal 2844 zcmV+%3*+=3iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8p)EKIChe0Cuuwxj?&grDgq=(krrJgrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z+oxs*Z$aKV(|^#v)W6cZAcs2<0QiG*dS)N z4jQeBxGz>a5)gc3Si43qAPcKhrKfVMt<3TaJmQ7H0;?5KZb8Ct$9{=7TeY1ie7pUk z5{2(AmJ|@Fw`$WxuhGsAN#5p{a2AS&xXX^pFWWG8b*!G5stq-}@=UIak0FKAWf{Ff zp8wiU=eQhcz+~yABv%_1rFu}^Q`#bMTFDCALV+xnYvWB~vOvyEN^O=XaTnRgI z|8_~AgPuMedYH+UGzL3fjI#t=Q@6#3`D_UXyE8D@&1D|ub0tkBA^dUN6iN<&JOS8` zE%PNbiKh#t&pBW9Vw@#-aGqe*(-?e0ZB%Mw4poZJ^9&v`*rGJ@Fv2H0m3fg|dsZ)((jWH9|KralK| z0(A-}8jUm=>j^$%m}$&vk=19iFk&!Gx~gikZ4z*hz`n`!TX~gYLuau;8>ftsn`1C_ z9J^FG|kls^A#4nS6(CfG4`ialeHG+fp5 zlZJ;*5{$=gf_;l(-8~(obp!j0J#2tL>n~c64jYXZ+Ux|_wAf*2E^vf4R!3;oo=Jnf zZl_ai%8WFqHRDI=jgA6Of6yv-FGyDqB=0;IJ94*NSE|kDQTWLP0}p|Q)q|-z23xtR zJO|YiYn$a_CIkB5&WrL(cm`LLiYT?~We^EBXHp;y^6fTN0Bs56;-^Q4@cbtaJnQKA zi@)^o7jXx9m_kPi6iUolA%aqD0xfB;Q>{X@FL}os@Uhn6W#n0g4ay9IdPX*%D+onR z5VFcn|ADIHHMOXy*&RVCJSb#~NX>2Q!Zu_9#9c+~5M{BT?P7H#Hus|Ny$R?oD=lmnW>R~t4(6>k$5{um!~q`JIUC+hZ-*Q;A!Gl{%iCPHgLWc}{qMX7e4!$AOYTFP?S z2XLKNnN>g&P9OE>p!?r~6}?AGKx~R2&ex_DkOvX??lV~t8w$wjZk=fUsgC}DsYy5^ zv>I)gb!USu#!V=dyRe`}w=RPcuUDUSiR)##(*-{t!-!IEl`Be9+?PdAwQ{vdG78Cj zD>FNRbh=GhgjK~gardIICDNP}?EMR2508RJN5j;{KGGdeP34N4siPOie@Mku6uWx= zQWeD~gU8*P*xYYbly0XEH2yU7eHWK_9;6B>o4%uS{n#f&BL_r|)H}FceOiIT1376d z6UT5%5%QI?Tvn#t_Jw~PR~!8GIK4LguNk49 z*d69VucoQmaN!bMAb^v00`O~ssaN#D<%5IQr3306a>qzd#kNwbw;q@4(eNz%sPecg zC3_LUc37P2h6ypj&l4G>YEX}5}g*QBeE%Fe3+v)e?K|k>ZYZeJ?sVUt3zzQ9rf#c1h_QCfb<2fZ9sws;??QakF$Q1%IE-tW()aYBnK7 zCZwjrhDElBluOR|I0gS)Jrxi1J;zEpm?PCNw>ohQo7gz+No=F{6)2NzY8PgKrc!l9 z!=nut-I$ZuO05I2^f#|~vJ!rZ6<@`t=|)W^v(uTZf=0;pG3VpaI!7+0>eJ=Sz~&}E zxfAcCKJ}*x2a2#9Rk4fD>-b!5_BChTqZ>C@_37G|0CPh{UiVWR%%*V z`>Ki2R%!_QCGw`N#cFy}0)2pu&q~BF5XKb+W%VIKPc77@ ztKx#<&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oM-@yslbqofohH5yQnno)})HTpzOHWWx+B z-vAr06WS_{M+ENEr#E9bsTcDY&iCKO@Gu#uEq~{V3d~$x&lfkhICj+^QmsWJ_W=L^ D;j)%3 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_071/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_071/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e577eed8b69f30a0424de3e58967e7d8554983ae GIT binary patch literal 1294 zcmV+p1@ZbHiwFpS%z9-4|6guzWMwXJYixQhbZu||rB>Z<95oOpv}wMYH2qME5D%yD zl1O21?{c|IK?qesMHMAH6!igAS>D~*vvXd1vAwyZs1m$XRPr0<0sa`?`L7u7?tKsm zDH0p$cI~leelzo%nf!e7cee3f{kV@LFE2}oN?wBC5+ab}@RBM6A-(gM8OptXco2_ra5yfLNwgHD;tS;N1C-FPw{V`fTGVK(sNIRc`H`;mr1odXG6nTL8`)(U;V+C8r+Eu2ym) z)l`ym&?cmO5#Ooin093OIY=tgC92&msm2mQb|RZX&=!HXUn(Jp5g}t)rD;tgw}LgY zeQ};A==lYiQjQ+J--`o_Lgp668!eUFER^IS5pChDA%sLgwgk^0Z9>2_{8)iZk?|`% zWWA}1B4mh`Wu5n##?^)+Z;&?5pwxi6qOcY9#+skOG zgX-Y&`qN6LwS)8Ca;s%2``+E1NuPzS7bT>NW4H5GMvO%c{*^)A!QAbq3c<_lu%p3L z!kQ49di_ob4scd&_ZY_EIw%{AJ<(q?zDX@M4G`0`~xs@dGOysafX z-o3bv_JFn9Uh8Ja(R0Wa+DYi$-GzxRqHo>ACJ~R2L+dkdz5DFi29c}SSg7b`CXRcf zqX8e}g- z*Kzv4W@MMN(ZoqfFr3|`DZ7CUMTa`BZJJA&;#CG& zOgWCW0HR6?Zf)pa@7x+ryn>7q|J4_N{}G-)-8zxA$qi1(hOozR} z@yQA8r^j(0;$C(X{?j-f4DrZLeIBP|o4\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_071/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_071/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6e563b0dbf9a209f85089e168b8e09176a10bb00 GIT binary patch literal 2543 zcmVb!>EBVP-aOFMt2!F)4+T>Z=6KVQlJ(wn{$9)wtM z{1`_=WMLu<5WxaT!Z3*9EWN58_4F`F+&KFoyZxu^`)o5^HzznEPT*(Fhbs$n7nXLi z^ww$9N$j{zd>~9C6oxQ3OV@W3--@Y`AF^~UO8nUIa5i2^&pm>UF`MnIHMO&JPaFpx z7T>sd2;L1uA4MTCgAn^>=!DpHd`!gp(09x*3M?}oM?o?gn{!V@lO%&T*osZZHl=D& zL`RC?hn++y_oMmXAOHT>-;DqKAzj11ZBTd8U&xYNDiq~Hv1~~9Yo$s}k_1_n?%ykB zRBhr!Fp|1?PJgUuT9#fA2aYd7D#wsQUD0*5(>7c6cD~z{juLE9ObVhy< zVLJ&S)mQf$O|zx6`)0SN?5g`&dLDW`T!855C|!M_Wa(;Ak|ZkW=tjHV0?FrLJSa#d zxda_W!HFD#gdt3It=U&}V^`H5o1MPV?HgHo?iGG1d0Bcz2VuQ$JT~>t&XX+tN`#da z6M`eLQkCvks^VLG5IO!xBs4*5ySnxa>_DPHDH7+|84@>7BK%Grs&;X|)oG}^s?yWJ z!H15w?F zdC==j_!-UH(Go7EVpCk>dyVH^7`rw_2QKoVT+cl77&g6TBpbZB^J`%!QJ8ENE)Ivnyxm zb+$4+0G*z~mS(-#Xqj5Q-Go|!UDMZvzOh@l2MhnWLjymRll8u?^iCyZ^?fETXu6r# zrJn8o_x#FAM7E`x?QBcMtx~z>`Z=i7yz#aq)k0^xENzuaH4^0VyEXd=4D5N=mQ<`+ z91fx!7b*7UW~*D}VvQu*3ozO)Nn7Po%|djFc$zomS^%I-0f}?Xat+V&;d1R8Ax2S- zixiIzml#DBhu<(A#B|&-V)(Gk;W39jrWCtua6IGiVZd;e$q${7;U%&e#^6xqFw;4XWo|I@3lEk!3cV$M!=-r2Va#E|;fTYC3k41l=6}G#vOM+;Hlwq60nAmLEi8EZ3Cd3ksIE-1t<9obgT_bM%zzdf+9C!?mI2G)EOD3_3Pz(Pj+pusO*j=M z55j~j8zh`9@r;DSqsH&y%e!@7s(thI5dcQ{c8LSmW;k+2%SMQzc-e^Xn~+J=W$2z(PFWL)gu+#7Ll(xZ9gJwHF zO3(L9IQ@aETsy&9fskCZbd!FvQq0CHL@3dMV{&TCv0(1hEEwgaL*zt2LB1%_t=EjI_9c^!jZ>g{bnHxOS4* zQff{M_BSV{efcVR_-eedxr^-}LK~&(?TuH@UjK3X4NsbGMCIT+z24MO=YLws6T}Yuo4>y z@4&l!W9P!Scby>(mAHD%~;q6SZqLwa%lumW>b6FB*^f`tn;ualO%idmPl<&HP0m zMDck0)QvFT!mF*i3j6ilfm6CLQ9FW*YG>i{C5sc4|*VFY7iXDu>XGhi?KbaLO!d-#BrAU%6v`STBcCTVq z%7w+x)QQK15v+g`(dwa4lbRrVFc!J@uzr^{IrTWKMr@o4dVeq|b(6l{iEIk^Lar^sgw>Yl zBiZ^NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVI1k(HS+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=)?IhU_y_<1^w=Hx literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_071/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_071/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..467053c5abbc16ba3a1c866f8ab054fc0861eaba GIT binary patch literal 1539 zcmV+e2K@OSiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@HdiZF)gF40{mV zhuB*pU+W|rilIP|qS%%_v=75lgPGU`iv5)xQt~A( zvZix|AQH*L^L^*=BYpVGwLkv3dBr~Z3r3UEgt!S!NJJTN3G0~`<35p@zIF)j?Dwql zYj&2E^&(<8CYiqB34#?tQqee#Xr@{>$hJG3+ zdE5`q!&Mm;i9|dh42>2D7G*7jNhl^NSC`?7+_s}-0Q*0BvA^h0UzH3 zAq>3l3lj4IK}I#>^ieVe^m$>CGDbWiB^IX$xaDjL$a@MpLo9p*f%cJ)6_)TZ9={8% zUPO$j2=);WjBs~6x?yu^mJ>npU=T)Q3% zT7(q^_6b(uR8aRvQ&ZMwe8|v%2x*pllHZ}AuBqOt8ek!n)kzRm3vVJlMx)AvZ8e$3&ep0U)6`7TrfahLPy&7{y%|a9#X9*~D zBjQidlOP+DFhO3Xgn6L&g*vESrg3am2q%eM_mRiNTq9>7e!H&*7&g>Wy;0k1!#0or ziN^aa)1~5U8Fxw7Y*DIC-Jvk9O~}g!Df4WA<5T9-LZ#u)`qpUlsp)!_5N~33Jt)TD z91+=1ua>V|@k!vEKU?hnF3Yrg44T|>jHXPkD_^fV@H{B2o%+60OmNHuCm*J<*{x23 znUAFde~Itdfk5!s;nFpF7+D>2%8U(9j;)O!AW%}>c?7duD_Bns$}n0Uk=SxdKy3T< zS=B^R&A$D-#Yd$ApCoxydZ9{{8Svuk=%~b* zB&r0UJxrN-M_kHMr{g}Kn$nn)Z(|<5jWOTGW%)MeE^@|}J7ehAYfoxn1 z*}NFCIS*v>V#wCTkgfj#Y4kCl8jOdJqz2>avZOzf8a^0uel>hBb&{_K%uPAcnf^q6C7^M%^na&l!Im_lXC3E{jXB5$2n(`5-*vec%UZ3z(`;3t1Vu;*sP^Qj z!b1ouxVGDL8(G@b8??u`Ac&lJB(a6mTYWt*^zCg;W}U1Y24P6_dQozZ`}NYZ;s%HH zQeMZ%>`-4bc2Hx5FApIoy@q;Rjjj&AK{ID*n}?>EJGG%6T_)6v?uS)WUdAl###AX&UBA^!a370NubVyj_U}K<^Os&m%m!(= zuG%XWl*^{Pcbc`J`{@!joAnkgyyVGjy1v`5W{XM9_tv%e~iZq)g3`6=R p3;mG5{~+wW$q2;22=T#ebd`d*7Oifx@3zyf`!A72u*m8U003(V;`aam literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_071/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_071/create_stimuli/_report/report.rst new file mode 100644 index 00000000..0feaa371 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_071/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a022 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 071 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 071 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012329 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_071/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_071/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_071/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2c0752a7782b331ceb0af90a4984383c5827ec6a GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8d;*9IChe0CuuSnj?&grDgq=(Q8rb@rbUXzm|rG9TaKh+KwwEi!dI{WNhxus z{h1m33;Hk5&^PHb^d0&Hy$h1qrDP>em1ykY+1Zo(abr()U6>q&sr|s#eB$K$C|vad+czu}4VS_jk6~a)qrI(-^(Z{# zhmM8#6BG4;U5~d_&&7)4B3p3{7nz2QFkkN5hT?jTruak82?j%D%7j;N&^tkzuNbW{_B(|DLqueals+}l&XgZo| z@_}tkN{@Koa(PbNt7b@>&k2R?+-3~p@z)K5|Gied)sd^624LR{kmi_<7lrRU5hZ!A z)s#CeU~$VB*p7$vz=eF@IjGc>Mzz^h+MVjYco2mvFlwO;te(u0#ILGRxSY#ov!tgb z$<1;DdVcHry-YSQYvt`DK^*1AB)30Y)BQ+|E8IZu6(;%roo(k4b`7_oey^@B@hkBafeEr;p7ziSRo% zh}o@!Myn$3i`9+<1RojJuF(s~!YWnisoZKSvpfTjcww->YDJV=knr2FU*gSHZ6^xf zZojBR;d_fE1w`tt+H}z=+W8^L+x!yFLeUU+*-`mr8|JQ#)iYDIp=NJ9lk4JRNa1u@ zMz2`lzxFeEE>9XTS$ZkS)ka0B9#r>~wg{YVg8q)Y6WhcuEcfa{mgy1@K0J~;g@of z>PpqlrKBvs&c)5Tq{MY8MF;;`Sz7Y&ZnmTwyV=}MzECpl7!*s^a5tMRxyEiGyOYnC zuoL%hmGn92>C>T|Y_6m+*zsbVBiNd{-QFqWN;ue^fx&J*yHm)QG?j$#$8l3AIRFX- zU_Z7jl+YxeE|k9DeASC_j^M$0f>lpr@Cmh1sf{^QDLyYSc*tOj8u=!j>`xec?ohl< z`_B!R;sogwGK5W!!7QY%nTY3*3mTni^v(qaQ=3IBFq0`S)Jw4ES_wX3QaolbVlZZ~ z$6%FN3Oq?De}^tha}C;Hvd1JuQz^BvL8;*}#X5r#)@j(0(Vvwjti>HL7}18sj#vvr z17?2Daue+KEQ$vVb}9A;YJw+>{e-n)`~#*9*QO-!XaS#7u8fhZO=!O}qL^LV!m0(v z=#=6yVz@$sF4|!hYPki93v4*1F>-nd{@PEV9Wc=>id9V4?^z5SQ8#^4qxK_%>1Q$Z zIWQBbQ#jFRq{&!M@EOBQV^)i-K9hwJgK5%LRhw;-fP)0~O{U)}s1zGIiw)X1WsKZB zgQ+8DFi5aR&ByA9F`@mA8{njY-ARHc*zM07e}kQO=Rvmg#piPXvhp;+j;T}Z8H1$Z zs-B-TJam#^Ja!Z8TNLZ==^&#U*k9~n0|Z)s(Smf?XuQy7C%~q~4nuQ+BebzPLbLWv z8tipDooZ8Nq(QA2KT20R3OxNmtK7XHT|tn%^IYu6-Ev*2HlIh~Cl?Gn1R7Qkrs^1M z<*M==R8OpJmbbH6&yn46M`bw!a+Df}DgFf70OfBc!Fin+r&0t{Im>*bf2L6*1!BBv4e1?5wWnjox zO%s6}`*6BQsVaBdG;hBtL4w|AW!zr9EWu@4CV~rorYifr3Fs{=BWx9CQae=#^H!T= z>Emy|O$4TiFeV2Q4iD3RjE^}|UEZq`b^FQd)vd3YMBXkFp|v2ges}SrR6Eb%AOJZn z<+$8^xX!E0Dxe9ckNR`a{cpjF-lHWTHboHUsc8iiKm@+~Ojg8(0&==rCz^k%qd#D3 z63z&%MjK|`S!auJ14`vCEU3|~%b>*T)n{GedRgvt!OzDqqSRaEiqaJKWf4@ZTy2t! zLNedV&Q2hmZc`RvRdG$+y(nynG$#dn??Twaqu|leFulHybjMTE`R$GL(Tn3hq~j`z zUA=#)isF;O<8DoC?zbvRw^Iiie;WF}i%UEYQiYUF-_f~#>=UAq10qN29o()yt-#@d zoHUk+W4NUV`AS(XE7NZK!ad7PuPYv^9^zrU_FeUqM-y_C#?#&sKT>0cR}ItZn0lG^ zOfj4YAiK5dUbj+y1{I(My2^bG?BW~a;D@)CmVRUtA*EKjP<=C|(>nas27f(HuTB4J zMyMxthq=(JX{t6{xC9pn;G~@Z{F-3u6@75|;NW%XfO?1AG1619t<>tR$K`r7JPSXn zJnl-#UPN%YQh{?E)ZAzB8v$4Khr5?fgz+uB+$f81|9=!$8g?DW8)D(3T{ya?z^A3V7%d;`9pXr1z~FFVBc2BGOl<BYB8O5ZTi`s@YNW?EN$RRM|{rCVwE`+R1d&Q;R0 z328DRJsmbIvPGm_a>mDL_~+{Bc%bh&R@%WFsfM}LiDTHr#&J(#8@;bUndH*DFbg!5 zsw)~Et;6X0oWy2&4TxpFdBu~J@Kdb#Dn89LYBHIf$>tO^Lbi`NACJ~Jaw%1xE@uWd zHUJ`bckReu+qe*Xh7J$c92+Bl4T26-!zRC`gYnw&F()%qglqB@uESSI_zG{zH-AmO z`Rnk_Cw%j7%C~S$zJ=@XEhKykKhAePhm1@KSAgTb2OG}1Ve4qJ>#6ntt!Fn25DGL| zVA(k7D;733SP$g!aF{&?M~7?Qy!zssR|)ZXae{~A*y>(P>fZ5Y`tlHQb?m_N6Zo;}2|vB+v!RPLa)_*)fhIIG*;5T4=@RtPFL|rd w?0Z`?{6JBBVuI(N5*1LNH;P=I6Cw~u&q~BF5XKb+W%VIKPc77@ zuHu5?&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oM-@oL4Qk&I{Oph~eTOPYf?pt`AvpvS9|6 zZ-9;032ha}BLes7)0;7z)Qfox=lgGCc$f^-mcMgF1!k_UuNODBICj+^JxT?-_W=L^ D0wb1* literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_072/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_072/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..96cbd9c067a0c28317b6cf2512fd57de876646aa GIT binary patch literal 1295 zcmV+q1@QVGiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpG-D~*vvXd1vAuUmQ6zY&sN^@y1N_X zYJj9%d$-c|?slSN#z&R4b)iNGre5q$l^$n8O^JXB2!!_h?Af>8ZI_k{b8Yi3mlkwJ z6S#gFRT8U6#sxxJ%cwB;-U+)10TQb;da>JKDu>RwfJ|u{Bgk;T@HcpNqkDS%q#s2Q zdLDMQvee@KO5c}m6D}Y@KuT7acM=UKBpM3TgCMLfgSkXg!_qP@YQI1Jx4Dj_x-di) zAjvE(n2K$Nmq-qlDU9Q$s1ZWLG)GPf{ZYbo7Ut|SkMXbNW?A;bdGC3psD69T5;#}Z_Mj9=*@ z>rI*GAw#q%s=UuMuGJj5Lh@I2HKABg>)l>7JjF6FXp+q9&Aa`kqs+HVJCrE5m+h$z zs)NfL&q|q84$gba?S`f7dv|XpeIB-67LY8C-N_mmF%~)aR|;7Rb9ay^1TWL0mIhM_ zYeH;~TBeN8k(NiTK&!BI_~}*)AD)Mb4C2s=keStPbNchvK7M`j)75^v=F~wWIGmko zF13TE1I)QYdorK=qS(xY``o>Lc643yex-s+CyU%WH5V?wtg^EsUqNqDK z?xW)SgjkJaH#340f&@NoAGdqHjNKj|Nu`0nMFK^|qj&C3-RG(iW&CS@z%s_zITPS^ znyxdKxt*se&Y`ZcFREZsw_a1i_%pW}P9xb^d4}$}Z8B1J)njo90p`cvXgp^v-PsnNg+2@;h^z*mQK&fN-(5 z)NbmAg1+CqW(U2$Q-`img05%oyZ_}%=*Xs_QZ;Q&yK2iUd+Uwcu4f6MdSpUhd4z>T zrW{9G08z#{w>I>zcWxagUQR}_|LTjs{|L{YZiC3mWQfF8HN>zXg$CM6dMC%jsNWs- zPlmnWNfveK$&*164F<pngvdLe~l96kry?&fT$AdxKJv~haQPPD04Eot{ z5ci)zKlX3&#{|pqKV^XbjB)%wXXCdXFr*S7MZL4>hGAagGKCBOby~*le*mC#s;_ei F003?Nc_IJ+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_072/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_072/afni_proc/_report/report.rst new file mode 100644 index 00000000..179379b5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_072/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a049 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 072 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 072 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071506 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_072/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_072/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_072/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2794c55d0e4d434379a57d8da0fc2e5674937618 GIT binary patch literal 2542 zcmVb!>EBVP_Xk*{dpMf1nG$=*#B0D4M=1GL#8DVOd58K_Qwy&vu0~~xv zyj?O(SYS=ncw%;Y)-uoFM;;gis5UjT3kkoP+hx{#~@1hjP8})YP>{kitb+WLT}p-^GQpRAvnrY&zEYRlYQvt!CTO8=V%^3hbJJAq~v^!Zs}Y<1P#QTuwFzhT1=ul=U~6xTG6aUYAC8 z_}`0bYZ2Wo)*Z52EbWvlb=S{9weC%Ji^Y0Kb}Pl5a=A`}Tz;?aoPeRT=-Mfk>b8J` zD90s+y@lD@PNh_*$?g)2cgw|{O1W+$Hbp$kn@T+ZP+@?^xn`w~=lO7@{*@G?D90s+ z$Hyy-B3r<(xDMhv?gVjsToLd@z#dnMT|PLT3-~zTxW?tjB;BZ{6^=r0g4cr4(M<9Li# zcrNJAMIFIDVBQFQ?gX8l!pGcKK`FH7Tpmn07GpaVwIV3J=6Hq$U!lQ+4un9xu)=Xg zoK9#=gW(E)7q6h72(x({Bg*5CJONI*nUQOA{V5UTBIY*7?g}~_&TT%^eCDk1k>Hsv zM2o$VkcFv$dD0QGm!C<%$qJ5KLGD!$$HWma;f>dVQdkx+Hx!J=D;#n48JY?zTpol8 zT{UPpU*S0oM<-4j zdR%Y_jZaI&2@-pBT7wCEJUi7E2f#;5?1ttkAE8ar6ffILYOpux_tlOmP=i({KT0q5 zEjaywtK2xlT7i&!aG>?gK|{CH&Ow%benug}z)GEDL5xAyRILMGJvp~ouN8~H53WCJ zJcl#5X*D&Yr#FBkTv}3r0?@asoB{LP-h<=?5*kKBSEnq0Q z&lV$;S_j-R_WG&{vptZ5Xe{SkM>cWf5g(WtwIhsuxm;ChwxX1*`=f1SRcutVQ0cy6 zRky398b;-Nj&cvO0OYQz^%=7`#qDx-q;>YP^t1Eqi1@afI6$wiw7cI}t#;4qHB8`# zJA$eg923_?a_A;w;!}C-g$4L$mw|}_{q%^&*egI+j9eE39s76@q@kLF9?#n^>X4uh zMH;uKHw;*|bw;@0XTh?s&4F)u1?66KNwqh1Q1A9wmOlIb`xU`-F{SJ-BGJj#Z}J=%joSoBU-0O)-TU4irPPbivZ-bUXn`Nu+AGo6wrj*hkgLO|2>H4 z8ZQB@qX9YJTvR{>NZ^&Hrlqwlpwk1LasCC5{z#}vxFdAiJs5TUwpfgJpj2)^K<$BU z0u$HOrvqks-Ruv*&S%hL>D@-t>S+6>2CUXpJ1nD+%=e1R8%Tf9F*S%PuZbIHi7lh% ztYCk4X4)4olZP)STetVI6GUjMT)VUN^4Yh)-pZ>eH}&DUD#~vLj|MHRv)^r6gT4-K z{B{z@A+5_YP!(1-qrj0yxlNdj-3=vH?_hT0NfRy)?545K48xXU&Nmxo!&->_GkaEA ztSgklmKLH)uAVLIv1~gQV}k zyL@9D{^Py1wV(Kiuu`j^slKJBi#q(-I)6T&-kAP3^l(e!7v_xAwvjzKwFGAzpsV%@ z&^Jtm-XeqLgNxU>3+i>YV~i(S&uZ!2M-4rj9HpN&9}SGvw}|0JvkCV&sJWZ@i$I9t z$?mxuVZMde+YJr&|EGDS(J%;H*+aw?u5(vm#>I7gaarA5Y}M8`uthD{cmHR>WD*|5 z6F8NUbaN8W*hegkw>%L{E>1Sn%@B$mjKOC|(TShT3svc!#NJYhMQLQ0YtnqXYE>(R z<^XyfFitCI}Vi^LC;nC8ztS4PX{D~rbPjrg~NM_aHk zx9!05;3&Sk73Gg+)B>08ZY`gm?ru3KMoe_4et8T2h{rwyteZVX!TFI(m)g5qw*VFX z_`@xUWf8@#XE_dqVy=}dGSvD;ki_|-r(eA7!8F7+J42gCuqB9XMu^1NF+j@S zFt0WopI9Xt>v>K(=|`3oGevsxlxo2iyik?Ol9EBCU51sNVjuZ7W|b%X55s&3G`ST3 E0Qy|@NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVIFH)xS+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=xw(}zAZ0dQ$a7IeK8VZ6HK~mAINNK5;Q9_BpB1{fT{n?|KQIrcFB9#bU3=&kKl=>o~ zQK@g7obF<;_n_2^0hRA0WBr&!4Hs7qA+lwz%q%7 zEU)6ea}uu2u*fCiIbmqLK(Ht)2~0v6Q3;1+EZlk`z?4CwRPqF{`KL`p0U5pb*6)R4CnbS79t2m&3V2rDe%V={gd zT7#4rQ4t&=AeiD{GP-7SX_gZ~@?a1~@?rW4?QMHJPMM z6LBNwX^LcORxBz6wldOlJ_zPu6bBIb0ounDBK)M|85Nn8n}Szf3cZ|hM$JOh8)pG1 z1SyG*(UTw>lQ2PE7KDYM__+?KUKUwqRtV?0UH7ra`AQ>4Abz{AMi@5KLdW+WY{E8> z0Es61t<;VBY?*XP*KAR$4&8lWT$_*=9~UgN0ZvYtPivJXKkIAb(Wj>CSx&;K+2yz% zgL6cbKfPMKa3LbGbMkDl`@1QNU=K98;TTPsT(`bncHp^FTRWX?r=H-L2~IUkGqYQr z9J2^Z2mbQNu>-N-nZu=P^f0#C9j`I*^xmK{D95rFIIVQ2;G=SLM z*GFv=NxS++Ao}6mAD%onv+sHx1g92L(p7TQa4TU?!>K=7E%+q)!^R8MXq^JDzjk*U zoJpb@06M^wnRm*iZ1nr?^J7!|8TtCN@bxEr{qyqe&d9er3*YX9Z}+@>do%Lw&BC`g z;oJLfzT-J&q$0cx93PwWs!3Ty4ju~32Bhh2^Z+X4X^}BG>D%nJTE{)O@FTP9^}*3@ z0K0cvAJ2O#_JKz7cC^v{O$XMyz3 zhU}gV*_{Qldp2b6Y{=gKfHeA;O%2AwM^b}vbzagRNev$iIlCG@7;<(sychC>0-=I_ z&oO4p)32;?XZ!S#Wlk#VZ~T~JYyE{<-*75rJvN2PhLgZ~Nkr8;siyN1u*M&gKn``4 zYBshxBXGz<8B}|OD%snDQf+Zer_|q^qpWWm^EMP~P+8-&9ZApYY;}8WC_xcY0;)YZ zuJ90o3U1Twx_(&%dW{Yk7X*=mkmRC;zEYRmlYYJMtiHiv zy-?LLvfR;^j2+Zi$;%xGO0S>+SL3V0Z_un*+UAaFR!(iGyXOh@tovab)j5P)B7!8g zPhT^apqLh>hPA-*kcBXxncLV~y==xLF9ejHJ9-HUZefdWXsjJ8wX0$pLce+n3{r5p z%3AFNs@#?8rh~8;NYlOrdj;)NxOf?}BFLyxrn-Ks7vMgYp+QhS`S$NW&GVODM9c34K#0 oQ9|HL|`_)N\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_072/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_072/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6c9582a086d32d40b249d2456b9cc68f1eb7ec2d GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grDgq=xkv3H&rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`>&nBzo7r}41J}(LLZ@bK?=K+ti-7jjXgZOd-vY67Z;1Oz~7et_3uxYlE3IP$MjA; z#Fj!akS2`c*A{<&l{C&Lf_xM%39<8cl^clg%M4DriLZGcOpc?~z0lDE;^g}{TJb|CFl`i%mZBSvVPHg~y{%7-I6B}* zu8sI(3k`r>pLaCh!>a2cNA*k(S*C+9Ul};2>iMp&1|#1Mha+{ygjaFcKSp|>nueMy z3B2wjEkG)Un4x6?86)(ygiQUbfBd(y_laGNR*+*Tgj4i;At#90ypYWol-$FzxK+*< zxMF_mf$%UUW@FQbnS|>N`AMzOh@)G4-*kA$=LqsB*JN30x722(RjJpyarBkt>YBxe zjyWwq;se{`Icc|+C2c-06iWHc1SaFJ8wUTo?MAz+)VfW;fgd8>wOl`r-gzR)%5J-* zblbqA?#R$t=_yZC zxxM=|jy~n#^70`@K3^>59u`ad2|D#nXUJocpp`wj@dErnqQS`LXW1EGD@h{!PE2BU zd%xMPN_$eRD+9qtroChKL$a`HO@6AhJL){oz#~~0EU;FUlr|*%PU4q%b2P_|qqjRR zs&Vw*Vo3p!M!P;+^eXNAkmT+B63#=>5ck+o)Ht?d3h zmKFvht|3+0dqNz&Pp?cDK)YL`mu9tIZK{n*s}8jSw@y#yddgn*0bKYeZL;u7Ia%$= zweF>)EWgght%j^7bt%XD|GBxeC3 z{aa<@9Q2LZ&~`3g)*0;j3Cc(Tx_;kg;F!7@SUR;In@m58sn4O6 zLW9DoP9sexMv6}vW;(N4WDl4uj2TRmu4(#wn*rs-uNr*yxR|Ra?Io_%=q zi!P{6j%4J}Bl(NE5dVVGFVV;;t%niLzMGc8NNYTDx)d@nv;nI=U4a zAg|tSw!c>E&5qisD4-9w8B^OmGc8NwJu4iV4(5lpmxcf2L@*Ly9G~I<*;yD0G|NID z$3C1bQm!ez4$a$d%8;PE50MeorPkXjOm^VL}e6hH*N`%F=#rV4Vp*C3jIrlUV#Y7))} z?PdpN-CbvkaRW-_9xSNYYbc<^8?|RW;(A%>_Q21_Frqfvm8#m3_7n+Jtx{`|j6yQs z%FRz8-Cj$PU{y&?+`A}ji8Ln#d;db%gTwIA;V84dhYZ)(GGb{XbNJ%u51FKj5?AkE zs-om%@VHl(T6^uP+Uque#-Bz(;NddQgH$19GjI)VkobgXNv+IgSnvZzct^-dy;n9>FrSYt{%#XE%;Z?)5I%ZyGJu?g^ z0?2N?w%e;#o8uWawZUJH(`(cJni1-W z-C-{D>bjZtWb`*Ecak4~eHs*ihe zx)%{#saD|}2Q~Lu@U6Jc@-FE=X^-2WdXm4-dnwRl@IE#^3P2O`dn>$Ah^ z>g-mne+{>&3isVlTrl4BPJ zXBz)Ay6GcqlZWWr?qHA%2BGihE<9UW(Jgo~_`#38;>n4{EjUoGoWJgBh5hKJ>3Cs) zlh-}(4(9K$R2=y6{@Lo%l7R-9#kWi9z_if%`~}oz#?S&y1&SNx+Zp)#d~Th|S2Obo z88RU=8#ZmSMPxj3#>W}>=NXw~VBouU#>E_|hI6Z9*K~-D>m4UH#z2KK$!B(87HBHX zP<1?Bhtc(O5}TPdAeR016;D>e&#)S3_$1q`D`a*ymsimkIRWMZJYM6-rPKntoH^Lo z0EoPuwZmX-<3jK`IyhK!9gKoC2s+eEhx}SD#%o7MoWe{IuE|%p4qqYVE4(RR@tS+ls*zT%tmEnJgt;W~T^Dc{16^F5zKMrMSoz;Vxq4QJhS3^d*GHD`#{bDISS1)40h z9h~+R3mY4(2l9A0$Q^;BgSBs8eevz9l=yjZf`_BT>V87%{?TUU@(^)#|7arvb4kby zP&<#9fsjX+LgudyDO?>=xK2pn>X72qA;s&26t50hxH@Fv{|HIy<9gLVJp4k{KwP~k z>0hWCes;*~SHsT^dHrhm$&d>b7`Q*Rjgc=)_|J)PzIt)XB0E*$@BEK!TlWux`NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVIFH-yS+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=qvhD2_y_<17)~Dv literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_073/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_073/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2caccbed531b236af7f85f72b9d91f08d04ab27b GIT binary patch literal 1538 zcmV+d2L1UTiwFo)%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=An>cK zdDwv)rxU@jMDp^Ub1x4$mp@zL=H&+ggCRDuT~KYl7Sx}p+s)r0)b^5 z=4n>OefK0>lVOob#52OsXn|l+R$`chQlerG$y|aY5~*;S75dgb_aP!iWlTb326zr= zbN6A=fRGGPmgP!L;$2I4fD>dL1~CZ+V`?{2tg?iwg!;(G!GJKpy7;)?hn2~a999E9 zz5_xSc;68u}Qob7__nLGoY_MzTTj3gjjg&k$#j86g$2b`xf&Mgr3K4$N@{Eei%1yvaFS%Y$IiqGFs*SS% z6#RsQQ}iUr#w1LTmpNepD1NR5s+W11niaxXX4ie>alX{ZF^J#pt09IBwa{vN4>w^O zNPtA+{Z{B&b+(MVq-(Y)RY&fDFs@C=i#s_BY=Gla=5nRd_$PgRH2TzZJTBu7cPV(a!#Htc7NAp?(c&pHyooWlk3J;%MLtuD{H5 zlVKKO>A+tWI(8ruJaxEqjUGl;`)N&rdEY}J)ki$BR)<+~ZoEi|j z_xiYLB59W22t+@)_x+RSX7)X=h2Yd;O1er8Yi=p*NjTLFi)z{u$ zjWbD94M6*tGV@Njl(k;ZeLgj%JtN=tEPUHzzU}k!?aauxGYj9&m~ZF2e7iI9?asot zJLcQ{Z@!~BW~3y%4IFpOc~z$@B!`a#W_?okHo5>6@FY)}9QSQ@8;xlXF8s*sc|CBn zS9^W@#p~lS@sT*eL(f{RTT<)24d>k<<7&OvaA2;1bb#6j(E-TbJCLojA=_s|wr7EC zpAFeL8?rMCWan(i?%9yt{{dpr*5Bwc$JY7_wZ7q$%Gxo7%7zoec}YasI;p1f60pV}lRyS_ zm8#daIU{h$LK#$fgeuwFGS`_AokD+ojxHt8k;SgQWbB~EieK(RPSZ$~c`l&z+|^4^a0^>}Lt|~K)Gmu@2>seAFi63b zGHaC+sB%}zn-0RFFHQS4>=krC;o@b?azCX?nd\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_073/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_073/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..823dc77e007d9029d9aea063b0ff83fbaa6c0787 GIT binary patch literal 2847 zcmV+)3*hu0iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=3krrJgrbUXzn13cfTaKi`fWVT3guh?`l2YPM zdYKvA6}{^-^g;R(z3)@>EJ$IOl9f1BqOphH?w&p8+k=C}x4`$y|M=IZOUYmKnPYmV z9^yk3}5$5_DMjQ@3&-H^ix+|TJbP*1%ApU#2@wfO@ydJHpW8`Dgb>jM?rMbIX zsh>DnyX-m)Ov?;TxrwiN9!!p-)xFTs1LEZGakS!xPGH(79xX*T9>c(hMtfVI7;$vK zk6at^#}*m@yFTw|zK2!ULyqd19DKn7{W!V_qc+OI>d7ow`nncJ%lTX`M|#?_ z(yBC}=eJ(a&*ln30S5A%>6=*N1`z6Ay;qZ!JxP9|wtGsar^L~XLv)a{(!>(sI=-(D{$-dWUi;|WgozWf6^ukzm${J zo?Po*O3L!^lD6r_{V9MY#m*Nub zKQldwQ)E!c5Vm{CZ5FY>Os2e0KgGUhr}&sj@r1#M!I;55 zgEeL;@Fb!9UAipYGiig#9+MDVqtqrQrG_UI8w^I+pkc@6U|yQA7H`O4L>o3cVlNC0 znfZO&OR?9tDIPM|qc|99DV{R+Q`Uy@512MQhmyeK1$;)iGDe<0rTy-hVs>o{s}>le z6N)E@;R+49XqQ>2?THkNY&fPdcKa#*CP<+ZGSO^`HB8s<+YB62Hv>zj_G6RjXEF6T zv{GnLIMr#S>BLC!DZ@->R*UQblZ7#ZY0@=KpKp_Z!xRoIrr#DdicN#XCT*NBMqYuz z)R8+Jrr4+E6K%|x(0Lr%?fsaBD6FvLN5?PzBJDK`wrFcmU6T^1!nX zkG}lN0DqZukcTOBWI&-LoK+$yr54bVce}M3MEi<&{UM)d9bQ4cZ91ULFsNtb@P(pK z(gh)}ZVw)4s;FxvRm*P+YVkoaUqV`8%Mi983n1>QQkN);1#Oq8BdN6;M;~8SN2a4& zp#k#h-Ddl1wchNgor(hb@F8PryJx0lX}o8JL({?h(Dt(MpPUFr0*vER93VRjLxE;l z2;|s@vqj1^rPrZ(`%M`V^gb)&b{iELF55B@T<|kf+3!t3Z`oO4t2me1s|_%3cSx2# z{_eX}U|I-cave`DZ%%1Ewb7 zjL>d&VAkDrwiq{{RPMoon!SbsO1x2f)+4T$m2MCGd<-LMqg|=0Eoo1YK-DU>7Re|i z^R3+c1k&xb6bV+9)Wp4u!j?#LQn2?gggrP6A03V|>wCy>eJxWcZDbB#9Q`4aR8ivU z{YzDpoD3fK>QZa3T~&MC2GID^CY{sYUK;nH)lGl!(VOi*W>is^uK0= zdSZ8&3%$Co>7#{9aDf0$+bO`W38r1q2bT{HUY8E2cgYUJ+oB+fz~TILS1asCH%-S2 z1Dw3>d3P{>ho$1ckN3}3mzE4P$Sl5HQU|7m*5@yvHZz76XevfdU7vS+4M=qrn(B;g* z#s)y-?W`RJYa17W&(Xobn(JT`tU=JBW;*28axq>zI^q;&if~Q7!gcrxDPQ4D`4+Cp zw{RW4g_LjMP5Fw~ubA=`f1L0695ON^Tm_DMK5RJaremP#j;}dGw4U1(Arxq` z&~|XzR}?okSP$g!aF9C!M+a-)zWUi*G22Ii8G z8K8C^F#{owE``ir9a6YDq;Q>(!qp)QSBETICuHI3kmA)L#s4EDsgLVb1M%<+RReML zrlfzNYWUe9uU`#6JLL7N;U_~bRAAu#)HX)GEa5*V#`)^SEsN|_iNEtdvTfZz4DN4c zW|g(4Sr~0*MzCKZf7V*8rZ**!82^$4Jl}MJ^|h+&AlPIf literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_074/afni_proc/_0x03f26d04b517fbd5a4d2062ff3f2f68d.json b/Afni_proc_through_nipype/_subject_id_074/afni_proc/_0x03f26d04b517fbd5a4d2062ff3f2f68d.json new file mode 100644 index 00000000..4501ec74 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_074/afni_proc/_0x03f26d04b517fbd5a4d2062ff3f2f68d.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "074" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_074/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_074/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..159388a73df75bb909405abb849d1d866e5d5850 GIT binary patch literal 305 zcmV-10nYv(iwFpV%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z>f(ap&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oM-@ys27lofohH5yQnno)})HTpzOHWWx+B z-vAr06WS_{M+ENEr#E9bsTcDY&iCKO@Gu#uEq~{V3d~$xUoURwICj+^qJs5P_W=L^ DDhii= literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_074/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_074/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c201fd4c477f286c2f8b844e2d05684a8f47dd27 GIT binary patch literal 1293 zcmV+o1@ihIiwFpV%z9-4|6guzWMwXJYixQhbZu||rB>Z*95)cJn>hZ86X%1Zls+8p ziw*AH-uZHuw3HGkDWR$RkdlXnAhf%)C;7C}R?^c@Q|d3jz!RPqu8mk@y*hnG|t81Js0;M@P^4}bM< z{DE61k{00I7R@CmrBFsxc#t1MjX7o_Tj;aWbOuaOB-) zLJg3NYwy+~@2;gv=6qax+YoAuV4B5^nbMP7s2LG31%c3>o;>;9yPe8%VJ--7a%n;5 zG=+=1(Il~ovb2SHd}1$U{YhGkVzHgSLYZ+Bfub!mty zL6Uh{uoOEC50L^aQ<%ps%L_1;7NvK0PgQ~uNp2WqBq&sc-qs%Ap$R}qxGXDcmhtWh zl~O@!gDHb_vVeBGptcms3Z9UJrW26p>&oNt7%NkX3af!1&kztr-1jvUY6>K9WsyD( zD~>*HcT`eB3dT@ zs+lBH&?c08nctb_SaxLj6eN}D3e|3vRO1ywb|RZX(w2$1Qz{{d5usvPrD;tgx7J6( zoK5otBR?ZE$}z$ZdvRbi`$M5ilC(tU04nN=S;KPe>BZE4$B4lPQZFhg!*~hQXetxqbHJmzV6^HX( z?V%_*etAjHubR^(7RDazf2}0!A8unF+vDDScZoKzBJ3`O7HC0+FJAPcn$2y?+gZWm z-Sf*>4_LeHv2KPOokF&>PD1bQE?smHeH$h=iFh=?y3V8Z?u$!1M6P0Ep`x3aIPQ&( z2Wa>bA`Cx8As&W|k1D$0qcZdw7w^ zjN@nvAgZL`)`tG|-fiH-E66zU-+cA=AL04aZ4z0#44K%jhZr`b&_Fx!ao!(h@gRB7 z8|6v%fDW>LJnZK=%JbpF@b5>xAE#tnzlJ4a*U9>WB#n~4N`MUQ&Zirud7aA)&iuFUswDacY*^vga|r+d DMf`n2 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_074/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_074/afni_proc/_report/report.rst new file mode 100644 index 00000000..464fcac4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_074/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a067 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 074 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 074 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071973 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_074/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_074/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_074/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..46b53477e0ccb88eeeed7372a145135245182d94 GIT binary patch literal 2544 zcmVb!>EBVPC%m31wJ_!#) zED=A((Foa?N<&1kM3XQKqBu*hYR5f&OcOWGe$4LtIr|~Ioo-rF98nVZS?l52(%glW zoh-d|)^rjRm&AwCEJ9%jgR^vVFY)b|8Tm0wH=@LkiHEbvT6*pgbWHecAKEh~OZVkT z;9>cdi$~zyQ1($2QY#3tZ-pepF7Yvy8zY}sVHDU_Jc)v2Jh2v@$QDh8udp3k#IclG zMMlSp;D?h$DEFiF%|G3L|F!tvOX&vo9h13}{;H&u%7tR7P^_5BgL=7ISISbcR<2g> zXH0EMA{fcsJZC&sbv;Wj$V1}Gkje?9&`=FS>vpVmqtj@q{Ve^)4Q%AfiBIPBhjQ$N zvZU>*1=f~}rAn=MH-~xu+q%L2ZddR2O|{4W^wML^Fn7Bhv)=_TE|Rey zMA%6}NcGi&X3J`;oq^Tst9#l(mY#=R4;LVMHp_6BB_o_mR3C|;IcF+kWDn2#-^yZaN z<%Hr$uGW+X)tdYoA4bF<%akQ(W6#i^fgMORC`IxjJ0t4mNrc}SVQLo-+TEtMr>T7d z9DGQ;9WqQg9vB3uHZ`*g3BQutW!8M;2U+@I?^!cTKRQ`W;E3LB zErQ0YVIf@S&Z_BHc)mfk&+KgmmC*j9yuffl42C) zxXAGMXoXQ^3-}e+L0re3AdZhJ0-gxi<4Up12gh>(9|auOxcrEO9IueWq2RC^30Q>O zv@qilxp?ShbXj3%B%l48Q><;>UwPOm@pw-Eb z((`=_PJiGk*G{okAS9RewZ1uM=$6{q&(hCNDMT1psgo>-G3c7AwGXT(=Qis#MFDs-JNQxI$c zL&<%%7@^cU;Fhu5S5=tp8##!^a?W*R6GtBLftgV|!q}I~)l$tam5SDb(S2l9Y*e#Q z@j=O|-meyG7?tlirF)PCAa_lz&zQvtZkMwot+Sh@H_oyn;@fWG0KK~0?tW{v+C8h+ zFo7R#3#wjlL|hlip_`0}Pvx-}7T}*<1|}uwr-wAgUIDsd*e8o14b>dfFkso%8R3GT1BjfpuL!1#DP?yNiB7hD zlizR*-Q3j~yZ!v_>^8PtMsL>{(K%1XE0Zq7l==;F? zKY)ln;w7MUG$7}jiwdX!3B3H&w6wMbbb6pO&cEQ%9}6`JcZ6=c2cxdu7K`x?l*%;- zs6Eh4VB)&^bihonoBaXUxdACA@sX;AVOQ^+MTVJ&%XQhR$fK9sq1H|D8Csz8nm>|Ubkrt z`Z~Dr+esXUv@Xj)Ran`K0!JFRCrgd@vCe#zm&4$D9g!(^xOI!Y-pPCl_(El;B5=Zl_x@vaBc5ZmkwZ63mwAhsDH5@W{z zDSyMf(r|oY6=|&JIq9SyTUN{z>G4yl1zYf3RVquR3@Ys+tn3u~$hR@8Jn4V-U$?Kh G6#xLdeD#t5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_0x9ea914ea3a56de0871a6f0ae454e0e86.json b/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_0x9ea914ea3a56de0871a6f0ae454e0e86.json new file mode 100644 index 00000000..64daeb24 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_0x9ea914ea3a56de0871a6f0ae454e0e86.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "074" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..157a5c757bb5de797d0b308dcb88b5ea031a7286 GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTVI8WN`S+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=CUVEO_y_<101zGC literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..edd9923e88d09a2cc26633c15b50ab621667da86 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf)d+cp$!)~5MtoAd+iFzi8a zA7XE*EZeHnZYYKVL5gBq_Ru~IOAUgSt}Mn9sgjhFvSIZVJ#SOO8_U;`hR7Z*OLJiD}m@BH_? z@k@S`*Ry%TX$*OG&67Yi5T#k1Ml8>kNytD_>4k@R_UYq*Gm=Q*5gkgA4nk5!$+L@u z`FVEp{A8AXEM*`>^!^d2_CRP5qBXH1B6vJuI&ps3?i{lA{ar0AfN7R z|Bz=Zsb-Nn)w#;J1{qKfPFtf(q6G<9gt+Dd8Yz5VHN6M{JS`-qa;+JP7@B(#1VZXQ zf;0w-y+Yf?R=4xObsPuNH@#A5ObWrfd73T30eA>V@B;JIDq{%=`auv{rY4*xsS5ox zPRhLRo($LIR3?gu1UMNl5H89}h?7VRIuuyUB`hK+P2(ibZtaOaX2h8a!6#-wq!?}P zK290}B!uxK)oPmWS|mIgk;0)Df;XH%yAe~JL_$ZbPx{mw0>@Yv9}fn&GD(!;YT(Cr z2#6x?I}&0s0%BM*DIbGlfj+A&QqI8xrKmh4h^<6Zg}kk?Go;cdnCOuBR8xf?lkr>F z8bn}71=J@9Frxj*=vq-rvz!Erhl4nh45L>_H>E{F1jouqrAc8oMRsabf=u~z^hT=8 zszp>YM4wO{9!u)ZcxuXrTbC)8M6-G+T}ZXJ#R)jkACd z`VsiY;3=eyDVT(pDR2)NKi5Lmt2BthfbRtT7qm zCb$A!!=MAoxOqoHsamgRKR-65JtN-sEO^@!yzTSi?aYX`GYj6%1aIfOc-y|v3!#l8S{SnTPRQ2TA=_t%Y|j$1 zeRjys*&#c#gzTIh(mgw*`#(Y&e$2)O}+^%$P)}i z1^u35tdOT)7RIfu(?^y$sS1DN#~fShFZB9`RWfVa2$c;h#Pbql**eLl^8zT0KPG?# zb(OBywgd+}WKjlH9#JJbn=T5QF`PX6`W&*pY0R4_)=*i~sOc-mX>E4gCQ493v_!S1 z#tM%RRB&CpW4H6PpRKV07ZL~@c#srA>TPzV6#B(&P36739tL3u+0{yNPx`ZkXVndk zW(%c`QTa}G$=IRB3SaJEQrQX_2tB?!{D#dEWzpO*&C+R+>h5_`J?nnhBvlRZmPoLO z&C}P+B^1-rXxJjKI^-VC=jJx{Hd{7hN~98{=T5eSf?F2i8yjoKq;@H$G4<6`!LS5Z z%BodPQ01x1)PvqigsL&3f8f&&k_sK5(*yu(#xHcJ?W>`fl} nA>jWY9K6W^bKn3znvJhgnAd#4+x**K)4u&L4-t+7>JI<_AiCoT literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_report/report.rst new file mode 100644 index 00000000..c469b9b7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_074/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a067 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 074 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 074 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012461 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_074/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_074/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_074/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e034d8cf446452df074733a3eb9688048baea965 GIT binary patch literal 2850 zcmV+-3*Gb|iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?z|ADgq=3krGuUrbUY8n13cfTaKi`fWVT3guh?`l2YPM zd(n%`;4bK0pP?_%XXrDukJ7Usgp9)7!f_MC4I4i?`6e_8zdKR;cF|H98~ z!##5mXV^aS`l^O7*Hba#aNxR*=SSiF+Qmo*;lT8xAENcYMlYkaa9J544;zjhRUa8y~>igISV znA=znRZO#B5}EFq3e-B|Wax>rr@z?-@1^`5ZzXrHUlgT1}-%P85D+ zI+|+ofo)8R4|(5md9JosNs~686~sbzBZl$#tA@e5oyvagAPR58sD;w7dNNC@eO-yd#cU>% zAw4ZgZk8I*^J~}dr87Ap2LoBo@C>YSeF*iS+O0_PeocC;w7PP;D@Wn2BXpRtqVS#s zou#h)Sdm(LPonTs9xg8*VC3=nLS{Q(;7`$+XV?QClLRg8OZDgA2NDfN9zV@aADeL! z;dg8hv%3e4R=Kuct8^qF_|UL+jb1<&R<1}-5VqVRosWjX*_oeI4)%hhs2sh65ns1>+%x)Rrw_tRT&;UBli z!ms3HxhqvVSCX>$Di?R^k`mXY6dnBM_QHaPcQZxZ*v({ja$?c6V~{Ue!`)1#=o-6X zW+#^`Vkhq3Eb14ar%#7=GTEZWV8@GbmSAh@wy+~+i#XVwfx&Jrvm@q;no2_WO7IDj;xU5} zgE50W2CK|c;7LOHJ9Jr^YtROhJtiTVN~w(vN)3-G))|bjPQ#9j{;V`%E$)E9h&C*C z#F`r#F!Otsn_#zRQ9NLHLi?Q&#q8SV zRxL0_rxcG7!xb8I(GIgv%M~dW*>Fr_WN7 z21&zJJwIu9=p?~->?YW^DAwK6L0UJkKi|U!2(0Y*z0yWm8Q%{gK9H=l-}+r@bm|*^5Bwm1wr!8vsy>)mg-8S`78=Qxn$rW(6D+i zRmWf}SCnU+mx2EW-w6hCw|e zo6qHif+h%AWxKznDx#(q6g9goDEX~?wt&>!rY>wk7C_vUYaOC2=Coa`j%v-lDE#=U zIx=j{40MoJ?>1UrE7e9@X_sWshdYd^<(wO)sq(HF3=A9d1Itare{v!i3NVh(u#c=X z4Ed^QB9LPrP8TUv!e(EF^6+pCu(xNM6=aKX=1WxqE8y=A3^&HPMiFW14m z)h1c`_`B~CfoUR)$$^B!!_@ENV~$jp_v%F5e)4K{>uV;Fw~It*&55kvT)rrk&NDa& zKu(KUF1tm}9?UAB38#aDi2^mjc#2AC0?&Q?Go3Ea;FP^K86vc-YS)qW^G@tfvS}& zO_EVa=3ANB38d3)$~9P3ToVs23tJ-1Nx`mO3VV1IJUkkv*7lL^cxozFSWg{2KmJ`R zuAOkWUL*I9Ck>^3Gkh1AJI@gbVLNszf`LXOgS+FRsDYRvGuVOkwi zFVmhWh7$o~w_4fjmP=2e0<=I^xo?17d}AE^3_ut^~CNlmwGi#)rNDI;1U6xv=e||5lp?N4=x`ZysjKj?~^-5dQxjE)q3kusU8i_ z!jH<2x>B+i5nL*l;T#7w_gVZ#z*YU>?v)c^dmTH*Haqb>O zoF3Pwht=ijty=vWZczp9yC1n=yy2etLwG6$;quVIzO9mFT=R-xczd`UF1t|d;0(4M zp>Ej0B%S9rIr1(gli~VWuE0&U@=9Jz&wj>+KTHqcs%Qe2g9qJ`>!DHn2I%uQcmo7^ z_Kt68`#LV_KaJYEg)eL&! zZNqj0AIGnI-tEucVJX=6qJ#70g#{h;Q}b_^l)ho2wb=`(jg+qXssa?(i+5A-_xa2^ zl`W@c6H;VCYC3FKWQ$0-k;@BAZD-d*`8aDYg9gJ6wk2#r{BHWO#a1*{l!dG}x zzPTIn&E14=F5#PdQ@-L2`HDB;D<*u!*YmxYLq?{A%fNBpgAHfRuyr)q^;CO+)-oF+ zgaS<#ST;`j^5XhB>w!ET4l~E#=y2uRmtTDQG9i9ZoZ#U&wpxuztsZZrt_~4btHh;U|Z@c{TjxkTg#Q>DXUmtjEV5I@{x1H=wzYcX zuWqEKm9?*$7;U76uwNo?+M2JXHzg1o|C|I|&#?Wqm9k?a*knPc%shhJ$rMELRcl6v zoSfg_^BFPc$s3ROn6G0{bA_D9gVu&q~BF5XKb+W%VIKPc77@ z{#{VKdG#dhMI>aKsbP1}zs>${83O;)wqO6v18D0W-PR1M(QiR8C`x3OILJbTg#vSJp)NwUZAj6bvl zyb{n;{Sqr`jU(ECB8D3fT!GsY@hEzrlH4s8S5?cc^8(f&VmRB&6T{1t>qAzYY?y)N zYhdGbLR-c0h`@dN^kxi4_53!5)7`f*JWK{^%ip=80y9_Fm-Fiz9J}fdxZN6(_W=L^ Dt^1ik literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_075/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_075/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..df1422d379acf0de9569eee836d2a0cd38863855 GIT binary patch literal 1294 zcmV+p1@ZbHiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}wMYH2qME5D%yD zl1OE5FS*_&AcQKRqKXn8iuyoR8Sn1w**UMh*xtLOs1m$XRPr0<0sa`?`L7u7?tKsm zDH3h@#%l_2fz3? ze&4MUNel39gXWTxQmfRvO~N>6s#A91-3O0n24b03)rgTMfOppj&%E22pNweSA9}Z* zPy;06+Pjs=yBn#JIUm*0)`S`%nC4|?s`NM)YDxr5Kp?cIr%%51ZmY6fm`jVdxU`^i zn!@GX=#p4PaxM_kYEFg0=XO{{2#{K(F^iopQw4O-1msHF1VM%khQG$W>%GCzaX*e@ z%si}WWvRvWmAJj2NHmn_2SHd}g>b2+hGkVzHhF*i?{Hm7b!mty zL6TWpuoYVj50L^aQ&`6h%L_1;7NvLh&QyXKNp2WqBp6hM(N-Sep)o*7xGXDc7WwW9 zl~O@!hbe<}Jco9tptcms3Z9UJrely8>)PYd2s=}X3cG=So*^KLxF2XJ)C5T2%Dj9W zmI8g)?x>`M6pW$zf*`gAO&jvQ#YIMSMljJa$*83U|IF?8@NFa@@Cj%}5TKyR+`3!W zGPILm@z98tax7kZch^`|5+$)R+E`NWTOhk+)u1c6u->Um=$fFGBl?nBwv^O^+0jal zrJ71I0c}Fd7xkTLj%`PlPe4+cE>Z1vNi|*}WGAvI6m3z6yQLC>7!f*_Rhrf`aw~^O znDa@VVCLs!N;ziuelHFz3Y}X7Z@g4)vrv+UMzj}a4Iv}~vL$#1X%h;j;l~POii}_B zA?r<56rn@3EbG3{Jgznzd4uGy@709jg<9(!#wP>31_nct`F-fk!0y#Az;X`SF)TW+*0W#7BoGwai^^t^<0vF&Ew+K92p!M`%dJJ`GZR3UhoJ?v;O zm9Qq%_F>0V$r;k}VJFZkEFFBh*})Gl!i@~(AVtW`dbQpCd1nv*ee%)0Om?wc#fz|vxOv1ox7Wbop}VN|oZmAtJb zJl;LOiuZuE+aBv?$k7R83-2UocXtt@i|E@lQ6%Ca>dpErTkk%*azNxN3JVq8%*1hT zc+^M7cL=c>$!=x@Cj<#Rh>oH|UnOprkEGH-;5>!0=FvNMv(dSFL>d3e@3WjScE$v_ z?N)W>Hn;sa!#UJ5_E}vl>ed=c7=P-nhuugvR-IycZi|eRooVQ=_}bvDUr)npzL+3rg&6_iS*8G2Affp#_Mmi1M6a=(0JUPyjM<>Ve zQQR9ODP+Az>B+DM{RHUoF-0ZasrTcQZ2Q-+WaK*8VLwUZqv0^=4F=gTPJ1wfVLv|^ zCjDb{;NRkx30B~5#sGgA2$-*X87 E01^X>ga7~l literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_075/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_075/afni_proc/_report/report.rst new file mode 100644 index 00000000..9f7d86a5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_075/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a047 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 075 + diff --git a/Afni_proc_through_nipype/_subject_id_075/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_075/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..eca5a47fdd17e58ee7b9ab180c7959db097b5179 GIT binary patch literal 2890 zcmV-Q3$^qgiwFpT%z9-4|8iw>b!>EBVPBU}HBz3W5%W<+=OV$dj+lrLeo86S9$dSY~Z{d)V>?TEvq7MZK z^dan9e@kEb(4WzNQuGWdb4IpzV-$%2gWt@YIdjgLGc(_e{1sJZw02RDZZMS9d$r z6NMXBRR_Ld8vYqS^;Fk|&QZ8_6xfQh4hTG>qwJZ);OM3Xg@c zV&mc=Yz+A9@z zcOoJ-F+Au=%)BK%t~Hxccv~14wg90VLkOjsBsDs1rB!KH>a|`JeqlPAY6^jE%*qc1 z-*N@MaahZcvXIRcO4;og#_iWNgZ{%#v(uAny%u2K3y|iRju(aRJZ?zxVW%zkI$*`R zF|r*G>46KOzI#%wE3I0)uXKC0qsB=Tu0X4WGT=SwB{jaRMd5N*6h%_gk>qxz1vNi& z{Xs^|=km~yNj_>wkCjee?)K#*tLC6!5=nSzL2NAwggNUu4v^v$s zQKQzAz`%!wbzlqv;#jpNJ&`+IWgcg+BX$fNtW_Iw2LgU4)=RY6s_jJK+udi?D12`* zo4}A}r=B>yMl0VZal4qp`A~F-du*%xybFC-r|Oxh+K{fdp32R}BM4#QmN6(6gs=Tf zp3jp4be5h=a;;TWYA3ZrrP~0TZe?>jxgv3v#IMt9$j_s2`%3(HEAU}iWlrW}sewP{ zn~h56C>MqI>CE&1bb2*9HEZ>1OKDcxb;uQ1HGPTi%SV}AnE1yX;`o)Ato5Z@?@CaX zuTycmDJgMYO3}%GR+g4Ld?1!}<3P;r=L==ijzO_(jSobz>>39JaX+6gV<)cPDeD(t zpeIfHVz#U?*zsbVCD=;Tmi7zTG7b*rV04fd_Y3*5rjjB2Xe9RLLaupdhn%4imM z&y^qWzUsv|OYrDC#j2+<_!X5=sf;;RDLyYSc+6mn3i&4O?9Ui{?oeE!_2-65af);b z8G}ua!7QYznGw$+7Ibu`FgVXKn93~T9MhTFg$611Tr0(|m=I4Hj2Mg=>@iqnT!BM` z+V4=eG}oX7CVEUjG?kh*HK=KLO0mvhgmpUX#2C&~6MS(;3`VqIu`Sj@(}?Lmu-p{8 z1B>DjgI$XKk(%NeBR^wh82x~0!L_Loc(Q=csjZBVtIcS=GohIEZNcjtBXmmf6fw3! zfjaFlj#_Sk;sQGyQcKvIV)G3^4 zbfno-Pw^RJnZ|gFtRWMH34>|SRaKjBlYoO14o#-sDyS42I*ScjIAw&~JcFqsXEaK& zN5!Y=gb|_jjvL^#fZbV&XV@KH6#f7^@BW@xe(>o907iM5V#m}e_KZ{}G;?&&C_8`xj0VFw7b;i3eou+em(%yxiHi*1JDf{jqd>IBWpb82wd@AYbJ znV|;tc6^ks^b|P#fveoR#9D!nymQ>>$^A-GskM)z@Z(DY9s*XX2MI9-S-GYh1M7*o z&2mW;fgjv`R(TF*a8;=`q;9hUB;od)3S@x3-JuMiD*;{nO^m>JeQglr*S%$2lUF01Sf zcU7gJsU=0t?&Xx?ZZTUzYJNx00X<#;a#wBi2(wt=b}>6@v=5{3!>jDbur)K#fnL4a z>U^oxTV17Fk%1rXGoqGrZkVPjxMnaiY%Gi{Hv|9VGBD0TJ3hlcvNF)*tEP#7j=i5a zDb?hDm&WZUWeCuHmc|`6D-ulGG9g^>Nm%xKGvHfRCbv_ZQ|+}ThO!x( zn`|;}L8{yXhg$un3{1RPd)g}mx(Q*<|JW%b7|NYFN23K$K2)-(j8Cb@}({A<+HDT$;DX|tGa(Bi{hKX zqkg^7KI&AJey<5;{Ce#BE-niKP!*CkLr3R_u}&C`+zok>@1S<|Nfj;+uK_pc%PE{lyKAp^8PSNX5Ox_Dun{Nt^qr8jIMB-P57vTtr_l7~N9}g=%7Vm`k;q zrfTDbDY#?+PRl94*9@k zRk+7N&V3TU2)L?0KDcrtjF<3otI~k=|3RE-*mWFJuvEiju5))_#N@i3TvpeTrCR?I zmZ$>j?t3OoFx)eL45v~Mu8ke++bVJ6HBSWNmGN4*=0dWAGT3%cy@gKpLJ&?J8R`Sb>lKM-dR>4ryMd1ldH!xax< ziyWeFJHuhz=m(yyIdHbL!`pB&c>Wuoc(Oa>wPp3hO zjw|z5LE++6knt#6$i*HlnjTy11U@)6oIf8bV_-fe+I;Xp^+uTW>HA#y4Ey9I>hp^s z3rq;-&eCmy^(q*Ur$adH8GCnj#Dy8az7BS7lP~f-u=k>i=2#XiW=-|creV88hD-(s zAI!g(=j8^|^V-?ExdYjpn2kMP3`{&B88lT5e{<{q(_2geOH?Gu8Lz~7X2y!&6o4Pt z&74>$CW)2Wv*{W-nJB!Kt{2}sODq$wnT#LE4lxN!I@VQN9300Tsy1V@;x0=mQWNvt=JrzX~-q(i*tsY59^k@(v@>GE%0E| z<)&leKBT@4>xoNOD|hk4&qsfWfK3LG(kR{|t z2du!B4gpD?@3%Q!^;J?8Z>}6?ScFD#G{Q;7CejDo2B6IEzun-;DWv+F^MTVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iHt-%kwB^SM4*uABV;&? zjE0es2{IZ+#>2?i1Q`z_lVN1?A4okPX49ZMoM;+!t7D~4G!4&2noq;Ck>=CzB=X(_ zO8V3qQ-7;SeCU$H>BE(!H&xfKKYDGAuH?uCyUDtMl|U|7sC|j}?$`ZkI#!@dKBWNT zm`K~2Qi9ZyZMU!Y9oy~8;QV8|J?nMa?H7MRYveC0q~P+}Cy+CdQHDsyFhdn4NccM4 cryS2Qft6o~APCRn#BUq#7CbE|cK8SY06C!>ssI20 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_075/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_075/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8dab4bf6333530c6394a2b82532da1ea2eb70f15 GIT binary patch literal 1535 zcmVf+B$7AZY6zl0#8vK~U0YMXy9EB(=5^7-%m+1MpV$(Eg+TivE=jCGD>5 zz>U+5U|1qKocU(>k^AwNOMm=x?LzUGFE~pNQ*cw3Ld-b0zz6olMF1){mv-=-|DHE~ z&5!cBnJ1hkkejQ%1ge23&5|r;xmhL=14*SH9p>h<$027VmBJ@Fk|G;Kq>PfAi-ZNa zxp{KBOIy9o+$?%j0STDQ&77N?Pkq5dHYnmQ#A1N3%Er}wA%|fs_DKvQh!Nz|o$ViU zvyy2Rt5coV7}p>}>ceSkbV;-zA&U{$d`M%3?<=+!A%L%i#8j>}BauLJFNRP^?IB2O zpx7(4U2Jc3AM{$S7N&1|rO=oZg74*-S%L%b5s=^o<||dk5>oVoAhgVEIA2l~1zD1o zdEY%5uF0uP6%i?LGF~8Dl$8i4kpy%ku$W6&L{OS0X>M-q2@f;kOhph7J0LQQHg_K< z4FOWZc$#T7&382xK8;D?(2u|$PN3aLs7_;{W9AW$`a|Ft>*C|V09PiBGh7Y)_#OdK z#C=CXB1S+gYbNDma4gX0l|{xm_@ES(hXk>eXsVF6HFic+1_Towl7MQe@MAK53tNL2 zEUAD71Odj>n~bg&wY1Aguy{C#Bk3@Hg>+L|q(pG6j8vKwc2i`hMkUCMPe*TL%C1^W zHAD0%)zPt}?u@5qe8|N+`;y_Z<6am6r`$hAwd*OBxS5ch$R=B~X(4W= zB94iQ?TQ7Nqy>%4Tn7nrFbX}){DACJh8cd+Zdn%Dm74}Hy<}!N5uDkDs5Z_5Lhxb; zj=@t%8(T05FEijiGJdX&tXEl**cGB_TCDrn<9x}HBP4&ZuSOI%)Iz({dbokxKw(HS z*>Ab2RcFhjOSyK7GJWXoOY7REyttilzesR$%6wX}H2T?GACEq@UC&bRr)HPKY7Ea2 zng8@^@xp}wLg(b!Qta=#%Dg?~orCj@HK@)}0yxyZ8F2 zX)|e--vmiNy!XSC=XUnJR-53d#kF#^8r9sA*wb{Xk46JOA$?SPp=*s(!K<&`-J0ME zbPaJOz?Kji?=%?-tH`TyA!{$*lrQ2e;cC*i(Q7o0dvNhbX1CQxN4vGx zM_;}^ngAb@6Fu|`tF;2uT7TVncgVV0>o**nYePB+Z5+|Tko|W;w$BdPIXh%$mXMvZ zLw3&&*_|b1_w10pvqSd&M@Y+$+1Ow`d?YqlSLX%&k=XFTA!ld92Zx-U4et$kf`O=@ z-*b!=^7O01xV?4y$g(F@;cxudV{7e&UR!rcW^G%cvhGB9UV zD?CC_!ELx*x07d{S!Dw*BoH|8AuWW|TXVS-`o(Qc<^8-Kg;50NN+r1`{bu1=b%Ud3 zq0})d-!Yf09crxT(l;@zvosY?dgC=8kQaPK#7`&y(s|_roTsYKXT)f<h)5?n5; zRyjeHyHehC2$ch6+qZGAkbQ<1FKd>03DerD>$heB?_&uWc=?lW|NhfHf0;$XizF@9 z<>HEka@opz=V2#kw>${EO$Z)%?J#`sF!VP!JrC}C-S&N}zzci4!&POrOBhA$O&$di l;QufhyvYG`-~a)djjvLe*L=a-{5z6)?!QRfBc\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_075/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_075/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..da3e8fa24a95868a92f39d23bd117fa73d721a86 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=xkrGuUrbUXzn13cfTaKi`fWVT3guh?`ic;cE zdzl&B1-P|M9O+7m~l|GspDK zJj9t!fc$}`Bh2+Rj5r*6p6ds3bYHp{=^`9jLHt9!_V@Tzyc#X5W8`Dgb>jM?g_*lM zsh>Dnx#~I$Ov?<;xKm&AJeV9u%X^`t2gJz_akS)zPGH(79xX(-9>c(hMtfU7HR9-i zAGtQ-k1aF+c75K_d=IOxhaA;2J!F{&DSnmaA(P zA3Elw{D=>1kLRS_T9&l=yih3R*AtkGzit@(@3tH5u2SnZ0SA7Fbk}nIIC|%aBrCh^ zmeOqli@WB~aeZWj9_0J}ezmSPYptHz>DKn7{W!V}qc+OI>d7ow`nncJi}_qGM|#?_ z(yBC}=eJ(a&*nrygn>L~`X<)60fc%`@6}{wPm-Ug?Vi%VH+hs(={82Nm$l-nwn_!D&Io6eBOBtc7ia^nT~fkcCm&rh>6z*dq(_&qg= z+1>qSyDIHTwXO^VADQ-!*$>IWsx|qk((b6UJOhtpVX(kjRZ`lJ@Oz10;?2<le-bkWPS^Fxxii%U2QMMFGbN0pZyn7eeUomrX#HGAus(vTiQ3a865 z`^5tPO^_8iku+ek{8CnG&8k}4ukETG2{_%#3mZa_ESBW2-IbJ=akPFVf1Di#aBpSz zXR)*}7;z1$(%uu|=zV%+x&YeU8oe~j^=eaXR9bbY6}WYJGS^e~vYT+>pR~!sujFL8 zC)c`HlCtq1jLfLW>P%PV{om{T$nLCBtwkVdd zoAhs#jSJ8>rbFAgd|79(>nAu*uswBK+AieFINX_m;f|QwE{J7aBO!v*q$!kL00jbY zkXRPVXp&49%3pAS<|jB$@bEmvny)kXnA&L6#u{l9pBETBVz5n(0*g)#CJa7zDK63e zbJL?ZMFxcoVasPQ3#n@+;yL7kMrRuRbAiFsW*!U7WXcQmQ|x2IXrP%A+6b~8fQ5+1l6i*oY32Vdn2TU8DLrLKA96qO986!`h(0+GJF}t?8RSS&K z3B{*~;R+49XqQ>2?G-34u;G}-*zKqIn;?Zw$V9U#)-YYaZ!>UA-3%<9+K)}9pT*SY z&`O~};Y6pACZ|S<&lqMpvsz>im@JGLOp~r@`fQs79Hww!G5vNyqu4Z9Y|_RFW8{ep zrjFdc`kL8UZtVdTF>L?lS>9Z0u5_~Q*{is zN=83y%?99}F6 zC0!8m>egUWQwzFQQnmb+pcXfa`4ZB^4MW&~EP%MHN?oEX=Coa+j-=LZ9DRIM9hr`9 zg$Bs0cbo06)q1m|b}9I6!t5h62s9 z5Xi9)r;C(pO0Prn_M0*!=zUhk?KUbhT((6bxZr21vfrD4-mmnsEAPJO|zX7Odz!S^`o_0&%`Pt$+fEz;~Z1s?=0LPWKu_^G|j32TV=E z8KK?mz^wbLY%#7usXTxMHG2&Olz5}|tVdigD%~FV`4~pjM!Ql~Thg8)fvQz%Es{}4 z=3BYh38dR=DH5zIsfh=dg)Nchq+lOj3VU!EJ~|v_R`-zM`dUUTtz`~h9Q`4aR8ivU z{VP?JoD3fK>QZa3T~&MC2GID^CY{sYUNASH)A@j!(VOi*W>is^uK0= zdSZ8&OTD_T>7%(zaESm;+bO`W38r1s2bT{HURMsN_sJb2Kb1Oaz0rPLX~d(m=%ec6 zo}BJQ1Xrq6ILATFeU`it@U&pGbLB*s+`@~^iUjxnM@gk&&vh-{)=Y~z&fSBE)8qQ| zu(~|GRqJ2FEvmwO_Y)V4H@&l91W%azODnnqPX<5uu~$5$jjhcBaJYEg)e8I3ZPW3> z04J||-W|-|VW~Lqa^lWs=YAz%0;I znxX1=yb7bM7bMm*D?lv!?JJ(Fgr8zH(C|sNSy#yHY%Z^&F>(UT1$ex|kxQusbU8Dy zwgwP+J1d95%G#yiGjwpU;yM@wD-d+3nGX52T#Q$ajyQ#xBHWO#a1*{l%2#+(zTyq} ziZ|garhLUW2ALn~9hm1@KSApZ64;#*^=@@9T<7>_kt>)GX5DGL| zXgfIVD;Cz)SP$g!aF9C!M+Yn4zWU{>fzB^2Ii8G z8K8C%F#{owu7u2AA5yqJq;Qjv!u27=>qCk+2`OG5vT%LK!v7JH)W^-Lfq3|Zs)4wA zQ_{asHT>+5H?M}D9rEVY@RK3uDll+=Y8xY8mhhhw<9zkPpph5NxubQ)V7P?&L}vu&q~BF5XKb+W%VIKPc77@ z{$UpsZ(cnKdl3oQW~y28k0jlTEcgI9#@F$Qdx6fNaa$tSt=7=^5;5xOAQksB)EAdVTR)7A z)eSheQ`7b%%KGl=bDLGIwvzfh4T}9%GF1ckbt3ug-)$^cKF^-Cf~=UuaF*;bJmU{7 z0j~x0RKLQCTH}Z|porlH1Xth=L_CTfs3h~{@}_FJbzZ;*L<|=Pd182(a(&2(lMOSl zd;@H}PH3w*9uc@tpWck&q+ZNpINyI8!^32tw)~wdDll_(eZ9E7!?COW0M|NN3-2%$=-sG@|2qCS8s%ey;!cFt=rw)ZY6sst|;mHdWzfIo(J{wv12dmltX zio~9DyY|>KznS^X%+I%fXB+QTkNZgS;;MkC-~|XSAp$uHFR4;6-rYXOxBtx_{^H;G z1Gh>f&B413nn_LytrG7x3FDxtPS}-qA3T`}h-F%pBSvZi-rXWR^=@Z=Goqbd*SqzY z8Xzgx-mOI5-AR|(&J31DG@LMfzY0vKmFFbt3gft8c@D)1c55i+R6!D8UqxB%c8Vq;qR_c z2^FMLm@r7jb7*@xwS`bt@R-Cj8G}Syx1Nkfn3+P9m<{}Rj({lQeykx^6Ci;r^YC$4 zGW20{qLdO6Fox7OZEM9x}z*tofB{4GESW=x^AiE~jpi8-s?v*BFO;F1beL*c-a_aHyYAMH3 zO(mItHX-GU_)ay)v?I$WAgN52sCK`g8cPV-iEIi%TLj`kp@bktgp8%7rWK9cN)HKh zImu%5{E|#5M-Sicb^?n+<`%|lEv4JcmE<82P2sE|gjhhj1kWICLclcqSb|KD@hez~ zJEqL@kRe(WRo-VBS8I;ELGo91HKABgYu#SwY=C88&?K4Hn|J$7N11P#D3mC-SJ6}l z)xqWUr=?6P2j{)zPQz06y}Lh?J_}nf3P={m?q-dQ7>gYID}}6uxjRS{f|u!0OM@we zH6gY~EmOu9NXw&EpjFs9{B*O056?qI261Rb$joZDIsJKSAHP2N>CJvrbLyZG9L`QP zm!e?!hZ|acRo^Z!G4^2pOC@3da1-O$T=(vq8?=F?&Gur`0?o1%25UY{wW=3#AkidiJIO_Q_cDsBel?DQr2^1BN-nqMVpQ}cc@vr;=%NS!9On}>N zy3SnYwx6Uphq}f-uYyJ0T1^S#&)w~C8p+1Wb9B#bk&&{q9{MXTYrNI+JS=O~mD4Y8 z;`D#b$Tn%BiIb9GINM88b^{xV4s~4FG*>dgt1?WacWyJtj4Cyj-?`hsrlYF{gp1v! zc2hSL^!?s7JLvu0I&_T^bUkz5{V!KSM>Y+Ws%dMYsx7nZtv7C~o+X6pkqLd}5f&1e zavW^|L>cGY+R(q=xiy@4IT^+Nt1tfkBRqe)bs{U1ArhO_5W|KP8fa^f^q>R%Y|u+- zlALzn#UB$a$N!W8{xin$|ALL*dccrMfE4x4rW=NNmCF<^{ntlj9Q^}hw(P=l2><|n CKz)<| literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_076/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_076/afni_proc/_report/report.rst new file mode 100644 index 00000000..0a99650d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_076/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a021 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 076 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 076 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.0755 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_076/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_076/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_076/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f5ebed9ea6fd93e5b0df5f8a0640378a9fe98f57 GIT binary patch literal 2544 zcmVb!>EBVP=zO4&^%r&OwN zTjZACkW23Q3AyK#pOI^NK#DVx?2Rw0Diy!!>FMe2>A`$6e_Z|R-#=f;|I(Yj6CQ+E zaQqlYLu6qh3=qKrNy0FQ;w-(Y9`*DvN!&R5F}w4p?1$`jx^7NzM4Z6Snh#eN<}NJl zWa+Kbrjyulo%leQMkownaF(v`CcYI@BR^*8T9o*)7F-d<6^`Y;WVH8+qJdT27G&bj+h$cw}Z?F}cj%`ZS ziinOB!4Er$Q0_{_Edg{5f62zHLx<(qGDwTq+dhLa}T}_iLp}O_GFSc~ibu z%&6MLiC`pk^PK)z(X=eRAPyW~gj9|pg}S2aYNu_s>g{?{>1F8yH?WW^CcZPPJrrXv z6a{rhDbTi9l*`rP-5loq@9PHpI~}dlGn8Hna2zGr3fv&d(o2t3-Pq~0ja~=5xaf@h zAi{PMLaMLsH=1TkY4^=;PuW%Xv-CXldbj}5(^0zmLdnwAq9jRF($S4}y#h41PMc!>RPj}=*F(9KQ=pkquV#K^xP}_Qu4C&iVnhh-*{~5ot-CH`n3ov zD<%X-Vx=nGuT;gi_#krpkw|EQ)^>I68Q6hDgHj~Uvoj=ao<#VaI#liAeyh_^cU7gQ zgM$wpZ`&CpG_Z!EKQTI8bCGB8BM%G$R2r($frMYl?NVz#@`Efr+kMu^(oc?86F8!E zn)9I7nea23x1%LoOvR?S#`hY}yD)ZbiVj@lL%E)NYG~>sNZ~vzXHY4N@8Uv9DA5KC z)}QN!(rTE>zOrL>Rq*LtQQnj*G+3IyPER$SXX)Kj`4hY(hHX{YU(AJ)cr0jYy|XK4 z>2A1!u7%cI-cnST4o6Tbw5f*>sad5)S3|))qPaICpV`g*YE}_lf%wjXmruGsa zaGqIQwAdSRS(tE`B^@Da@tFjiEaA}Q{is6n%x zAEoDeCY=7jRj!?2tw2aF?WsMZU)M~fy_cn5oluA{uu?mj6JyXd6mt()PtI*ttC9r# z;Oevbb2x(=W<%AxS{+Ejg#{HT0DZf{7(iDCx_I-|OE~}Of#BjfpFA1iL388lpfs8kP zo!@YD&DhZ>yZ!3@>^8PsN^e&w(K<%5zBsukN^cJ?0+7>MQ7GPnbzbA5fF|5Nv_0Vc zXCR_aSP7_Y70CJeyaLKV0xv%`OtobKo$hOt^Urzor(8|K9ih|e!l3>fTv&4U4PDm{aS>t0%aKZty zY%c+M&t&KWGFU#ic%8bSUZp!mf1-BHrq+2>*Rt_J`eox$UtfNUD6TgeaF2tUyP3ZT zgeV?wpSls|TX?lqS7HBunO7PKgTNI%h=%cjCxY?$@p`%*La~D}`0U7<<0rF1Mc5SRTZ$wJL#tF3X7?&) zrCeD2Or3aK7{RJovQUD9ZY_-PB!B$*<|7_|AkPuDoru2j%(B0v=Oau!dWfD4hQquw zP9on5;B0B97vN-w;-7fpkt+AA`4i94OIJG?q~{$!Ok$Eh_go$>p07+2!#CoeHXd%k z!rZn3&x51*?nab9nh_IRy1TJ>e!9D1qZm=qo!Z3>_;Wn^8KB+tF$&I)T)NQS-na#* z@cSQb2{el+zP;$UbELHxB+!Xpe&o!r=cB{O@#EXK8i9{*-MI*XE{11m>tkNpm{4TG z7$eWD?Cr_I(1}Rw;t7Vs{u1X;mg*m4o%$*+hQaqbawgbj)=m0)C$cHv3%Rxk6INTQ zR_LSNB3eouK6XM%_;QwG6Da0tsVqXRuLVh*FM9g*haOBrY|%5caR6Jwv5W{gF}8J( zvNy~tb=!B$B8jy;C++l8(~PMiIeJPpVGEwC2qi(zpwceF%1*G4d<)ac6aEKp0?rJ% G6#xL!GXe(y literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_076/create_stimuli/_0x1db59509511bb4dca10d238592ee3904.json b/Afni_proc_through_nipype/_subject_id_076/create_stimuli/_0x1db59509511bb4dca10d238592ee3904.json new file mode 100644 index 00000000..a6132ae8 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_076/create_stimuli/_0x1db59509511bb4dca10d238592ee3904.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "076" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_076/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_076/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..98791499bec0b6275e308338a3bc0033cdc08805 GIT binary patch literal 589 zcmV-T0TVVT8DliIoG7&=A<3aM1o{D4x}Vv9sN}?%7w%-Lh(HwI$2o?}&967V z|D3(*&Zf1u@5_ed5>t{1$=mCnDpa5n&w(N3>GUE*i z!9-Pgic(~`SlKFS_Yy9!l-PK^@%5YdyL%>~_&)yj^-5QdgD^uYM5OSfSXo|4c@5>= z>+CO%qppZetQ%=LkKp^;Y-Uj+khBzZ4l&W+6&1otQ}60tNo437nfOKr-{@H1*w8mN z@r@6@@v**%p>Ja1n;d+TfBW_|IYh+_mpdS+s$sE~%nC;If(besXC-x)~J&jr7n0H(yd0R15~X>0;SdyfkLKFkl`>g z8b(GY$Y>ZD42qsL{jDPLsY?#0k5`u7R9(OR=(RPvks}xEChHPb0=ZzJ_9f!GUk|70Sb;A2lmd)n zB5i9*2~tb8-M-y-Y`3q2i}QAS*6Xy}FaCno$X`}S!R4(_AZH?@43UgshAK>u@O8RR bIi6zzE58sy5MIQI-!|S~Q_5)X_y_<16XYI3 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_076/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_076/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9c23f0449fa24d1629e0000adc574a59fb0a65ea GIT binary patch literal 1539 zcmV+e2K@OSiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&X?j6B40{mV zhuCW>%a^3hhGHlXq$sv!5ADOS)F3E{wirvKN>WbJBEa@itN`DpJ#7DIzhZx7hm>q5 zF1)65gdh^h!}ERT@FRWr%auR=xpB!p`b$RB+MPoV9d4n=VL>C8S(i&VM#Zi~Wz-zvXV+rr;rWYuXKyd+~tkxr*korMPx?Ct9 zNE!o4-+=96W2^PJ?Rg%AZ+Zn+5EPJa=b2t2M+gt&H?s69jWK==u=(5jw;aBK)l385Nn88-o{KGQFH|M$JN$8)pG1 z_%R7j(UTw>lQ2PEXM_cy_&L~#t1?RxvqCsc?Ya*=&KDXv0rA^?HNdc;78*@&dkeOK z1V}X6Z@I3NXUnKdx@L<~b?hDrYO2t?n1_`|c8X7)p`f#B3)O1er8DsCa{aX95itp=YYeNuU)Dzypl@@s#; z!kHwh0-!xinR&-t%1Wo>zC1OhIV0cZEPR_IzRmOUZOzEHH4ER?h;Qq>eA_efZO_8D zJ>uK`Z@$AhW~3mz0~~kFc~zw>Bu7sKW<65%HrfCc@Hk7D9QAFrYqirJT=WAMq63hf4T#y=!tMih+AT@k4rY4^iADsu?8LhPA-*m<2GOncLWVy==xL&jgg7dwK~9ZefdWXsn$owTogJLccKq1}V5! zWUX`pRqjf0(?MADq-o!Uy@C!YT)d1~<|kAsQ(eE;3veGxP|wewef#&H=J`u6B4&d$ zT$k+?3(93v-aC!Z-`w8xwl^CM-*1NjZg^p{^>}l;Nl0tkYeNNY?cokrrr9iE6w!Bi p6h;L8ccb3BoInhWkPys\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_076/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_076/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..dfa30f5ff6f66343fd8f72fc74a734557dcbd00e GIT binary patch literal 2842 zcmV+#3+415iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0n>3jWM{aA$5djjUNSmq>(;`J<%r6t5En8ACAh0AM;VW2xq?EYR zK4u1QLErit`j`4s+Pff$T}oEsREfqOp548B@7ars#aZC*%m4iM=S%Tl_=Rn_r!L|Q z+ecns)ez=-Dn=X*T-WjZD7-DsM>+@xrXT$fZTus89j%9}$_RPbaO|k|Xldr|M&c(5 z*Dksae8V*SQ*P|3t_zc+aCI-RHJ>>7AqrQ#!1fIbMZ=}=+G7|P(rE8$V?7EF_@QGV z{@6r)VAtbq)pN1pxX4yq!$qcHBg~ikwxPJ5qbdH-bArK8nKI!O9Q2Nn<|~G-WQqk| z^N{Kz1w+ihG=PjAcxp_h_VxFFef8h_zyC5^LAEXvPT?PfjF3xbg>*JAXC9VvTcvEC zgT4oaTtv)9h6ghV*K5*~YP}wXH~5}m^N`OWGZUKGCfM3m&+R#Wb@ zfW=K?U^^bt0~hjrd%sds8r5c3X?Lo7;(iofhfxcqVfAE|B)+Of;c_;U$&j9wBsa?q z==rVd_tKf1kb{9NXLtryxjuxtQ|neGc~6v{D6OvC?#fYk?GPPgtSG!CL1(!uKT)LC z?$apzoQKQH2N-#Lp_qACDDo%h)HCb>k4b`7_N4j?@B@hkBafeEr;p7ziSRo%h}q5k zMyn$3iPeq-1RojJj?oLq!YWnisoZKSvpfTjcww->YDJV=knmfvU*gSHZ6^xfZNI2Q z;RlN)1w`tt+H}#YwDV(+%x)Rrw_tFpG!ar$|gr%S%R&p+v0XUTf)K43=DR1neBY8q^Tr?KaQJ1$pMfj0Q<3J zzJw<6bfI*g^Hnd#S%L>=306Ig!N=4_r8eeJrT8q*;30!8YUG=AvOi()nL}}r_MaIp z#R<|WWC)ucgIP#jGZD`q7c@H4=$#1+rZ$UMU?x*usFz^RwGw>Hq{9Fx)C5l$`w45q_yiBTp1%*o6vq|L@~Rzg;fiT(Fw(4 z#BhZMU9`h2)N=C_=h<*fW90M_{EeSLJ7A(&6swr7-?JDvqHg-8M(sxi)6Zh+b6_S= zr*NXtNRzRi;8TW~#;g`ueI^Sd2GgXgsy5pu0S5`}n@qozS1C4h78|s2!Wg+Z22)4Q zV31&snvc~HV?z5KH^4~)yORV@u-l(E{suem_QOo+{@pnMS$UFR$J8nIj6u?HRnJcv z9y(4i9=i$lEsAybWRTVk>@W7P0RpYRXhAw`G+t=46JXO~hoQN^5!zTCp;>z-4R*Vo zPPHjB(xBFiAEnnj3OxNmtK2y!T|tn%_gw7A-Ev*2HlIh~XXgw&1R7Qkrs^1M<*M== zR8OpJmW!DT=!4rY$}iy=Tu~~b)UKC7B;1%ufi%dsTT}tGC6J3>93H^)pFHra!=tbM z(#K!L9pqsO9Vt*KF=vGcO0fyFq}@)n3empi9dE$LT8EdBXBjpqGYsk(*?g`b6g5G} zDi8Y)R3)#eMMcd%6qLe)Lbiz1+?FnEK^8#VRm2Wa77N-gR!3rUHwr(!sE!O;%&3Hf0f371zX_^TL)$b5gMP&V@ZV3?3a0Q|o(3cRV$fD{iC?UmX206<1O0>cb0F z6rT(pcWYvEuT@dHojTC?^U(KQT;h3=|?sZQfj4h)i+~0t;1h!@Ymz?#`M2ognD9k zm~*|FrfS25OK^?=PTC2;ZwRJd(g&9h4qg`ysJF=-BRv({O0C{{T&_pM)9{nZe7;q`l-dYOG@7`(faHK)MiRoeN_R98>O2m_`5r^PGu{p*@P6C zkeUt~7TF?FE;-}l6#R4bR6Nl494qBuj#R_k>ew-CV&k~Sv5nqWpiHu<9he20O4St& zkJe#yeNJLCwFbn}-@fL_O86;Od=;Oh8#S5CPG_8bge$;t&w~wT-LQ2u+3{3+fYvjcc?boXEU;{x z^cC_O8>|QNcsR%$fun=9Z(ra4_H{yhUYy|JD7Ly6le%}bnYuVcT-`g`NWokZG6mG; z5mONI=t9WsrRc#01YjB`TmkuNAl)Cqy8!Zi4KDhm2}#h=?xkfBV)nAGsU=0BAXgXaE2J literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_077/afni_proc/_0x657a66eb55c9e5fe22b6facadb30a0cd.json b/Afni_proc_through_nipype/_subject_id_077/afni_proc/_0x657a66eb55c9e5fe22b6facadb30a0cd.json new file mode 100644 index 00000000..a9e19034 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_077/afni_proc/_0x657a66eb55c9e5fe22b6facadb30a0cd.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "077" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_077/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_077/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d2b430480efe3e93a37746477735eb81d82fbf1c GIT binary patch literal 306 zcmV-20nPp&iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPhF@@ z{euO?n^#Z5UKR=2W~y28k0jlTEcgI9#@F$Qdx6fNaa$nQt=7=^0x|08Ak80Us4p&!wtg5J zs~d1`r>5;El=a=!=Qb-_Z6)=28qD`w$y5&DfFgz)5L|&f5b-E_ppx7#7B^+ft@8plAY!;U$P>fslbkzY!?7#>0L^8!%J%^P E0BbIpSpWb4 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_077/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_077/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a723e4f673417f768e6c5c0869d2df93cdcbebf4 GIT binary patch literal 1293 zcmV+o1@ihIiwFpR%z9-4|6guzWMwXJYixQhbZu||rB>Z*95)cJn>hZ86X%1Zlsp{n ziw)`C-uZl&w3HGkDWR$RkdlXnAhf%)C;7C}R?^c>5hygV-_xEay7cjVn> zLJg3NYwy+~@2;gv=6qaR+YoAuV4B5^nbMP7s2LG31%c3>ojm={yPe8%VJ>Xmp2w$-@9QKAwX)CMlWu3nJS=rDj-+dCI~VdF#HXk-RupI9u49+ zM$f~pR+d`aUmN(!ZNV9&2uR5q^KPmEg+xP%dJu%wRWO%oYFJhkW#jiJ|2Ef^RF{UR z5+s?Y1yixZ@DeG&GKF#6vb+FeX;FH2_f#e5k>rL!MuI?9Xl?BnFHHbS!ev=mv-EdQ zsFVs)D@+-rlLfTf1+}G6R`7%*G@XD%TUVZp$C#N?RG1C?c#eQ5;=Zq;P*Wg*D~s@P zSTXc*d!mvOQZR<d7B?By89_%UB%_uZ{8-5E;%Y1)@Cj%}5TKyRLb_MS zGNhAW@KA`7aw6V%cgI*&5+yM*+E`MbTOzw4)u1c6l-{mP$eN&*Bl?nBw&K+N`PE8J zq?$=G1#Lpgm+_rxj%i1hPeD?du2Ah(Ni~)bvJ=@9g0>9Aol*%wj0hRaDotw|xwSqL z=4_fL==m9$QH~yd*oy;;Lgtpn8!eUFE|laU5pCgYAcRCfwgS%}Z9>2_{8)iZk@0Ii zWWA}1B4mh`Wu5oA#`T6HZ;||UT}>$#)JCr#KOSNk7&J*1_2%7v+ff!^Jyj1+QCI{xz@6j{oroRrO(3FixSf1vFmv&BgP^J|H>fmVD1i5h2UlOu%p3L z!kQ4D>$5= zYA;2>@T*H&e%;(IF){XF|0^Y7|8N`Q*k1SU+e@^8mCf#Q(*iBX@a4;XRI|Blc{?k3 zynAsO?E!1Iz1Gc;qf^M1+DYi$-KB{xqHo>ACJ~QDnAf?t-hF;)gUD5EEL3ze6UV*L z(Et_SCd6tayO|T55G3$0I*R(fO57eFOQnIpSqf#%qxbH5)930DW&CS@z;edeDHGs! z+pe>ax!orj&Y_;M&+A}Ox6x3-_!DIB_$J7lcvyodgZ%LZ?~JPFH2b?x-a z%Q*dCGqOwCXyT+K7|!m>l-Al+yGNUSu<#*z?u<7W!0pVhA zrQI|Q1%1DH!47(Vy$M~b1YOVF_y5b4(2-3`rFz<$sBX(Ff9H+cX=VwbdTc^pxrc>B zW*kRb08u3cw>I>z_ih6xUO~o*|N6_n{|L{YZj;E`WQfFeJ;bmfg$CLg9*^j72+8qr z`WTLL==YN$b|9K1M=_1l@b5=`9;alRzlJ4a*U9>WB#nu-{BtQa|r+d D?@y50 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_077/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_077/afni_proc/_report/report.rst new file mode 100644 index 00000000..57364524 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_077/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a013 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 077 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 077 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.076068 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_077/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_077/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_077/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..055c5a2700589816a834deca44062000f7a18c77 GIT binary patch literal 2539 zcmVb!>EBVPF#7a*msHcZ%>_q8L>Ak#zF5i?in&7B$Um%=Hfx&?rOk5XL9voDwFwDf zBy;nE{#4PlG`S=Xh$llT$B;r@(RH=cHe2;}y{Yul+}qz*8&`cF}8fi57XqzQ&l&1I&GuZ0WU6-k>`iljsr;b z_5DWEY$@%&+3hL2>VBGBgkBftAbK`RS6?Ye>si1BnKuP@ZRJNS!Q+@H-_;?ec!B(@=L+rKf{~kBPfY z1~Ch)q3F+yPS;%I8T`lsg8-F=YIGps*D|}znuk0;P0n{;G}7d=*~@U7Ml<2YFDg7oHoM`UFxq4~q;cW%)ytD@i5RfWi7p-B4N$ zQ`uK`%&rPPT__YcSyf%$XZh>&RO4lu+&`5+$&Dk}R=NGfTqusllBU)>yTvrQ$ycTa zpwmH+FLmVBw#3Sm38}vfkH~-l?Rlo@L^arkhz^>goP} zFRrYFbURF~p+@8F1sH9Y@>}In%|dL7Xqq*PH6K8k0UBkRE-*Yg zTw)Yj0)EGJ5Z7_Wh~vYufX4!Mxl-it!O={>hd#$uEDE0fz!cLMU*EaQ}TCmK6}*5V9vE z#6sM)DdDcsDaW>eF}3-$6Ea+sCd3kq1dMsZ6?@!cT_a)qzzvo-7`Pmd1RQW2jnER$ z1pS$)BiIMb8-d52pp#?xkozhq1=ftq{RzinY{#N53QF%eo?^jQXz-wYAy79cb6ggu z6B-kLu*4stCG=upHkV^WdHkU(zzH`qbS$nvA%a}Q+~&wxLYu>x#b=sL?Ik`CJhOyo zu{#v9FcC0MIzrasGYL3e!l5I`-7?~s*divp@m^30N&@DF{LyHML#{qW6G4T`{UD~x z1`TFQJfp$zsPSj`@@_rM*S`Dq2mqsezr?;{a~zVcVFoB1s$J*im_-KjU&^+cNv?-e4MSDRFcKW@Z(l!KY&}?T%>BXK2 zr$2C&8z)#R5RxlB$3IRDv!=e~LS{U3+)`%J(NQxI$bL&V(iJKO0jAciv{!H@BuQ*7OI-4@UUoB z9#jfdj7pn!aTBrtln%U^~pt1dV6pYfSlF}QsDut^O_I^G~xE4?E&vU2N8Y7 zOF(U_K+f0a6;K8ec=fqqsx1@fbYEkff6k*n7itpj2%T0JMqR%v7UMlAl^YOHtFIZr z#5Lu4pP61YdVR2S3wlhgQ*W4Ub=OdV)f!5hWfYQmF2A^e^!jZ>g{ZQcxN(x$GHT8W z_75kfef=hW{ARpycNg1!h&D>qdmC?Fy#4J)Rz;bqo2RNMyBR#`H`VrTr(yPc8o2TM zaTEo#Cd)uoSlJAHTN-9IVK#O*lvurk*|ld4xID0%#ws%mTZ%c~s2g>2F7{6BS!uqm zbc{kQ!{<5*(0dur*e#mQr8RkiG7mr2&8uT>WiFXxxDh~ho61hVQGX5+`MJd<9$7gnjpa7EC6=K{SR_ zDNfeMK8-xY!uZG&!T92MJy{Q+*ufZlc8VJD;#saDZA$DdC7+juR;en@9#qUqIk)(k zl4zV8!KzqAsl=XFf)G!#$DeOM;qeFZ9AcYS$!zY%7SX4C|i?r$ufpYCtiC_+qhuXcF@{)o#y1FV}pM#1@!Nf+AN8+QQZ{`BJ= ziDeN*cNZP^jiD;d}Vby~_~jVtAUgKINs23uP{hFmlbx z-d<4}l8{CYo?tlauL%C6iT)|pnXmF<7<{ioGQl>tZnD=qnNI;<$hAe7u-f@*l|AY$ zqGiP4QzvAEFJn12g<`Ij$}-gYnjc5mq9@;c?7=j^7CS>52e2iGWrT=C*w#VH-!QM$ zZI74*8fjTh+R5jp88JnA^ptAC7Q9fAN>VX}O1lgzJHa0EEX*oT`XAGSwxGEc006c( B?acrH literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_077/create_stimuli/_0x739c4a8b07a5681b1aaad919d61e986f.json b/Afni_proc_through_nipype/_subject_id_077/create_stimuli/_0x739c4a8b07a5681b1aaad919d61e986f.json new file mode 100644 index 00000000..cec6e98c --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_077/create_stimuli/_0x739c4a8b07a5681b1aaad919d61e986f.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "077" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_077/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_077/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0dd450c1d291d31e7f45ea57d2d8696224665db3 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9Zzt{1$=h!~Rj5EE$T@-%sb{!uDx8(LLbhmbRw$P)D4>K{fw}YP z4N&LZAsd7ca}q1xik9K!wMkT=rQjiiyslY}MryWyTv4 zf~l(V6s5>=v9?vz?j>AcDY5Zp>+3i1_xDUf@qPUD%ayJk2VsWRh)Cf{v9`RD@*2v& zuXDIKj=CZ?wXUV*Jb)i=^SMQdK+;ms1;j*uS5ycqO}(o-C6S?TWa1kgeWO!-V?*EA z#5X?r#;5uwhQ5i3Z*ufa{_We>=*V7prW`LhtdWgLfqqOmBnxB*ZlX{*t(uyMTeZ^4_$INd$_Xnrt13jN3X5XwH&!%KUtTs637KhwJ#Ch|GGa-rwVk*=M-QZ z6KPvBN|0Kz?e6uVW4n79OeXE_qStA6pZz7Rk-w^tg3BA9K+Z%)86p|O3{{vQ;p=pt ba=gFIZAe_XB-!|SKNtK5#_y_<1Fe)Ij literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_077/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_077/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..48fbcc6403f6032aab9d7b218c6ae3ac66ff7f88 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~31jl3vgb+a3h> zA@-KamhI-Up%@ATDT-~`L;El+H3&+gEXES4l9ZFQ2(Y~rE5NsD58FT5uh?JNAtl>M zimd4zA&5ls@SN`)exyJCa^;VIZeFsF{({l$Fe7e8Gm=n7T*CV1#dt_$p|9+~yZF6m z{8}6pbv=t1PD!C}1cG2ikW@6y6I$p+6jLIw2;##+fBGb16lH=3NX3HZ{TP)|3Vj*T zu+Vo-PIqz3>lAw4$C99sibBu0g}xea7SX-TRP+UMNH<~d|NpmkD5f{n_ zkj6mL*I+yEt#vlKtyT-tH@$)@ND9Dri(D^|0}=or&MfBZRmOs3;0Hh`k(+RVz%mZ= zG%NFda57wzVUbD1Gs4hlfnZUVVwi+dqGArkT!11Hsc@PV`tBb0AtOd*OhRM^cn;BK z9>JsmAsM19%axquyPWU%Xe2mBM zLaUz;Ln?wp1OOB4k4KknEzNQwC>{*LNH$1b1Kp(J8R85oBcwvsZi4L8s30O|lhNC` zG^>_iMFD+=ReUU|`=hBj8!*1l(2xjemV8p*eL-Q_VJ{2`!z?&PwObh$u$h3Jz$R0) zNg?iJJV}sD%!-A%z?MdOrVWHS7)Cy1et`Bdg$zIOT82etakk{h5s=^Rt09IBHRrWkn`^KQ zB!ooc{Z{B&b+(MVq-(Y)Rfq1rFs@C?^V>NKY=Yxc=4!>#_-B1|lCF}&np+Zkl1}x}Xuv1Q9@k!~TH{pk>T7qm z#+f9l20{CnGV@Njl(k;ZeQ|6`drG|RY4Enkc-!a2+nEw?XBxbnG2YI3@ph-g+nok) zcZ|3D-*`uJ%t#4%3ove*^Qul+NDdwg%=)C>TJ1upfG2s%s>-3RjPAcnf^q6C7<)vC#bxLM!8=AV1}@kIj2 zKv$`HZHqGkhb+jT$|I=c*7`aKn-QEse{&95-!$e;5Nn{UancNBtL3eCx=oOv2q^(- zPmUBGLZIN*+>YBWa$hggKI4KQauATr3aNMcS}FAHZA})vq8>+aO!W0ia*zA<-1F)N zhxJ^kV`Q=m?6;o@b?azCX?8Fl?m&%u2xMSZ_``t9F;n&&S)kC;u; zU|qCVERf4a-aG4^&7g}n{MI^tw6@{-9>zG_^ftpak8EzNMWDc~J>21{GMgogWBRs; o!\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_077/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_077/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f2d7f0c5dee2f153e189e1728217f019214672c5 GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}DYT1&VIChe0CuuwxR%vS~6#)>WNQ3sejTqy%jyXE*mRw^{&->L?sn=Y zj#e(a4g=FNgHvwoYn}&_<7jy|bo78Y`5}&${Ll$Z8^yzg=;jj`7}97r^sx~~2mH{r z5r1rlwx8wGJTjyxZaeX)*6jCy3O}YhlhL)A&+uRmZf$}ZB|;9daV;jUsr;@Dfv|CE2 z4J_`M1IP7|5qgmCd;8V8+N`y@>RzX|EA7Y8Ef}>?7FJJY$0>KNBK(d`Vs>Z0 z*{({vQmrEc!N;b(ZT3R4uxd?yrnL9eS)PGMvM^X+ttu&PNci2vFY)GRjvGfe_Fh)w z=>7SU0wRreeY)sn+W8U5+xaD&g`y$uv!lwZJ(#;R)=n+WfttPfTxm#8AcfOqnZ06x z|0c-hxjbpWWcih>)S6YbwqM&(_axwSGbe6{MY33uzjjAbUd7S+rTlSr7{I-i-JiwM z!eGcXq)K~NjH3_emFWOzcWU&~EZ3_|wNYu+p;qA5>B?MJ+08zJ3;(oD7Jexw%U!wF zxs;T}H@UdokkzCv<#_+Uw-y$Bye*Usb6d!5jvF zC>!UXXH18-gj`u?uu3FaFAFQ z%4m{I7t3F8f#xSTNATb*#hR}(_?X&g)W#ZW6rU9sJY=vFbk<`CgK_7f<|W=y)%)))Mg%w%w)<7^-}D6c8ZUg6ptB<7>pV0GgxDm z0#6dk-=)jaJ(D(=>@f+^HA-!4QfhcivB6-34H|Z2_GhIDYw-pQMzmqGBlg_TfSKR3 zy%c*ro8ke3J&J>Ymf{IxKVfYc|A1-3b0`Tsn!{(5D`Vv86WZ^NC}!6-w`!3wI-z)s z7_QKui*}iX+FpU;0vnELjND#|zX?+4giJJ>Vhz*v`!)kd)J@;gsr|@g`dLhU4y+U! z6i##+X)-oae9AD>nbjh@&tzf5V48GI(`VZx;4p=Ki|Mxu8pWo;Vv{yb7$YywVCu*n z3{vb<^RYH!OlZIBg*a_sZ<68(_WI|IzroJCwJDUp`1~AztUO7vYZ(;#<{)i&njfSM zA04L{kG&KJHpPZ_GRPVx4(5B<0HNNWw;&x38qc-a39xCg!_b`L2yLv5(5yX^20PtO zr`A#!X;5z^kJ4Km6`uZ}RqkJqt{_O>eIa#}Zl$5tS})@0(+dVZ0u5_~Q*{isN=!?~GRVcx4iDh@Pab&o;nA0W z?c*<#4)QRCjtnT2gtJNnrPKmi@=m8#gJ@szu0P-tt-~wGw@n9>83y%?96nzZOS&lL z)Xn}QO)cnJN!4PTws#L*|0)sgAwR%n2{ zdav33TCF$t)V+!V`f!UewcRt*vNYba!hz{veqei9_)ks*LlMUDDGrdGg`q&RECh1w zqv;~$n$q2)dHYQn67&Hp<8~Sq87|u*5nS*yRoU-PKyTSuaichs+RF_vZ|{*Tee&IR zslc=l#^gZ4;bG=a$uUQ6C_4?JZa;mqx(#%T$lFCCwB|(C?=D`HTIU5E1R$s79G80p z*LjIq1vKIG(Rcy6{~cJ-`?Lh4mIUH_d0GJl5P|PKS5&E~f}HL)h~}T_=nt8igfl|B zxd*fEt+K_q2BmTz7S!xE6j0)g+Vd`Py{L4$;O7$ps*tkjy9U=!d_pvGK;%fhgWIKNRX9A5lg1)( z47U^^U#%z=b=vJ*xM#WPb;U!?M?7rTfv27DXhM$Cc-mX$M_R)0s$p6kQ!mq=DTWgP zWVc@1=~gSxp#t>K(711aU28)D-8g5Y)?z^A3V7%#_219r%h0*fR#et)dWnA%!V0de|94&iL?BEQx9kF3L;Urt+ zHaPMwMG&~Yo-c8eM@6+*$j*MoW-!bS;Hu~%mxl-4lINpQ@&@Shw|D~tdG?WE`s7v5 zB>q0Sp;KyF^JQ50}0&qBg-PH!XC5F6J!PHc?63T2YZY{M+jRGOjc zc(e+mtLG%vGb=zW`|WF# zyzQ04U}fz>@EJNdSaBVUf)xll&`gK?S}w*bM@O8(OcAfiSG*2iG36`1E#Le#`R1>~ zH=pv&zb)UwHTf2O1KIfcYWA!R!zr1lWkvf2541SFF+{JWTEZg zw69oLTVp+t$HRee1da|?zJ2}0x35#;=fw#gjuNYf38{xi>zT_##MQ&2wG7N9Au~Yj zJYohy9$gBVyE>$Jbx83#A;qgh=C2N!zfQ>f)gcR4hb;UbAxV8)uNsJlU#J?0tG6Zn z3su9<4tf1*_}L+^UkyJQa;^dc_ouco@?{DCB{9xbFK$_6r%L>t|B-F$;bHJ_Ju|JW zUCqL1Ju`&;68Y2Cd^No-fyDTiB;fg`6RfUOT?fG?3p!=y5#)|gDv_^RGdkqt{1%_j zh&fN*cqGSs1B03?u&q~BF5XKb+W%VIKPc77@ z{=r4Xn^#Z5UPMB+nQE5&BT4rn3qC-O@pXJ6AHsIc(mi%g!#DHI@0+jV@883NZEa#6 z&f88ko@+&%w=w)MXp!wy-e@VQVkNTRI^i8*+?L37%M~=fM2vbmNX7jO^~I&p)(>N2 zbpy_A)wKPHvc9|c++ok)KBcN@!<&$B13AS-4uoFsb;&-g=2 zz$*bg)i1H4);OXKC}Ow)!4RL}2XINg04!^32tw)~wdDll_(eL26r!Lh6U0LMy-n)d+! E0J^u77ytkO literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_079/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_079/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..938ab3b176d6efb6f29532aabc42d90711b1eed7 GIT binary patch literal 1291 zcmV+m1@!tKiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpG- zu_xWGJ@(9RW_~mC^ZM_6`A4pML6c81nfJ{h;K#s#pssxO8>!Fsn3ral6e`4(+oHQl)K-Aj1J8UgO!V?y&!O(CKv0 z^RTOxr55+s2EKILa1IOsDOq9OV;WFMG!&=@L0DY|b4*jilQJ)Azd!u9xwfRbFhms~ z$viEXid~MENDh`OjN`TyIT%ax!n+4&Dn^f_FdPyR1gb=9YZ%?#2|z)FEJ|yZ{_bar z(Tr3I83#65K)aVyTV%>+A|^3q6Od@@#*^_FGgD+GW&=N-BOr>nA8E+d6iDF8B76c? z487l+D5V4j#!!7h5L=C=G5OHqCZ{?f=;(wb)KY^V3;6?FjWY;*0-6v6n9+D4-LGO9 z(n&CQC`3sy$zFSR-&j=;B{4GESW=x^BD*5hpi8-w-YZSWT1Krv^aZti#i>X0tEHSs zHIrlt+JuxZ<2%y=(~c~kf~1nIQ0;C(HI@*v6WJ7kwhYAmLS-2-S;$yYYFg3At@V&F z=hHMs&(Fz>3iR;ZZYQuPWNvA^)>68iTuBiU(G<=mLWna+R^S<=O$eBVA4`x78Nb#= z)|)cVLxyNkRC%9k+^9KniR7>9YD%%7HoLvf$q>uHph>c*H}4LbjlhpthAuBYz1|K&>P$fluEHEm5)wPl{Z@y6}evxHDRHleRP#6lu7 zfuk*eDC1mM8~WEXWX^jJUbvp$XE{z*6VxavGk$tHg_OUAC1^ae5O^hcw(I~*pX4(q}QMuYTZ6b~N5 zAog$Y$1|Sef5HL(IT!eU#wTw)U`QoEf_mrE4a2-4WCG{@>#xc<`Um>SXUlU5004@3 Bc&z{c literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_079/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_079/afni_proc/_report/report.rst new file mode 100644 index 00000000..61d69226 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_079/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a035 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 079 + diff --git a/Afni_proc_through_nipype/_subject_id_079/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_079/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..06e4a159d7ae08a0a71894f89fee38f548509365 GIT binary patch literal 2893 zcmV-T3$pYdiwFpT%z9-4|8iw>b!>EBVPeA9>Rg?N8d(Ue~i9~Hp6vgf;?tCY#G-3$nOZ&KJvKme1z* z3VX$fh)oO+dJ;2lNRMjGW)$8M28Jy_D8~>&sU}H{PFrbJ+Ld~(7logjj;5MIU>mdY z1Hrdkfo~kvGNdeIbA?iNJBD%lRn4IPu+!}HYU!YMlQ40|MC5}>sssreN2K%ha$6O!l*u^9&uzEgvU-9Bk` zs*R&YttWwj4-D(T7zD(zYE619ce=_v&R|FE7&us~HslTj{7$TwXtPz@iNZI#PpeV* z&T=+^ADgT z{7jzDlLB;>o=I}8RaI&ywL_)b0Gn=Pb33^rahAld(`(4jqHz0C{CF$yVOeEP=3}XW zKjxc_O6MpSh40dt=>h2UYIJJW>(!RhthDQpE3j(%65p4PGP^MGk2=KhOEFpROSRsm zpsZe{;#N~q;=GiilmFgaS@H0JSk{dLF}t5HlubJZ#j-U%5XG`<92CU;e7=mGxPGUs zFTg-gn)bzPS!1x{#W+i_m8dQ47qVp>9L&M!ATRD0@?}jWL-^CUm@7K~3It$3mMoOf zEbg8w-{*bRi*c6V(RqqhPh;>)Dx*>vbF5N)USRN;!4?(rP1@O?G5Fk}xJ2vE4VU5+ z=@c>sn;wH%NL4cAoeK?_Xun1E<1HEn88)9{pHoxup}bl8b8oTn!E;*J=MXu)Dztfi(A(|=&O zDRu`I#Ulp06#FAJ#WO~J#>z1I0n>tOQzP(X37=D286j7j(Ryb>G3(os*EvS$l;SC3 zY=r`K+F=~E+ycb~b~vUmaRw>=%1@ykFr!%%tC;%lSqz*|HA7RQ@)LupXED_|GE=Bi zIMe7zv#FlqGsZHF@fKM_CJGY<)1a%WHs2-z2PqtyOubc5DK>N#8?;#B$pQeQJWa7<>J)p%C@r|E=cfe^ zy-YElx+(T8igovNl+g|BFW0aG1ln*}f>hXOx>RO6z^27ELvhJQC}VYk=H)pxIPCX& zwYJPqgL*qYN^kZQIQ@aE+`GV9fsnj)+~~>uN>iz|kE8IT3j!VjR;mXHF$P(=rW^z7 ziMh>cNfdz}+%mk);xr4Az#duv|KK$ z>+U9-j9ZW@_rRf6zbOL~Z`PjliRx9k*9ScxK#S7sRH{n5aU?f@)ylOti6{i~4RL-0 z>Gj)k1H6iJ;@(AKOQ<ag^TSvtj7IK;Jjr)ZyY{#Wmj`mwSS5;K zNfG0#6}h4$)%Jxo%O~@S$Et?}*sgt7Jr&T5+@f((TNWm2Y~ib#X?7%9l9~j=jR2xs zuO0TQl_!t^TA-`^S72SdFi!sV#>&cTHW89)^!VAqw!hze)VBrO7|jy zE7dC8;~?igj$Z^^)gK>Rx)H`pc(qk&!1{kb&NS>gjwx8GVKUdbJ1}B$T~98n>&a5B ze*sHWfpzyi6DAn$nLmb8DG1lc4)$%8xbcc7g7MAqdbsXFvV$_%c5+R_4rZAmzr&Na z6j9`dTE4{3c8f}}kePp`hCj}XU{IAldq_7t^2#%d{u18w z5Vpu6`ld4+#*Kd9*_s1qOFO&;Cxhp|=7~q#-OKL5ZnU;|>1vb57Py5BRP8i6`OoUg zio7Utn-;`_gOQQ#bC5D7XR6rWD&OX~Bf~`8#_K|xWMLB9JfF=9*zi%t1-Xl-UzckeV;3zVxPQ3 zeYO~~z=Uw_EZrtpuYv)2I)u}nv3F-jT$%yw>tN?L`6AB)dly|a$Fg8CYpRbn4cjF$ zWHLbbVE(;0FV~o!SI*Y;9mwXyZ0rGJVB!hMps8y3n_K^%-eMA1q9RGocqPs=Ggkb% z0Q|si=EOoVNvzbKP1n%LMB%M;z4+c)VwrfwWc)yOh)Gz|u`b)<;5hD3wHccgw~-nJ zXvA`^Uo%H;KSpN*NA>jhZQl!A|2FW&bYoM<5{kkn6`Mmd4Y_1}an6wQVcl|JMmWjXMEZc+0F?RNHyb=Tg;alY-mtZh zT1*QW`1v(Q{xa$9!q(w$Zd4r`ZEQgh*XG@$uyvhZDrluZD}AI|O7ZwO#}5q;`zD$o zxGcTJ*b{})b+i*(g?TsNyPh#YI@PX_Uq1vo1Tf6CxtnlWilsgBqsZJ_a`C$EfaJm) r-x75UWT2EU2*4HAU_Hl^-VSd=xF^U~Z4Hj#V8H(m7dk1^jv4>}V0o;; literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_0x29b01735ef28de5158cd338cee9a79f8.json b/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_0x29b01735ef28de5158cd338cee9a79f8.json new file mode 100644 index 00000000..dc3b8167 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_0x29b01735ef28de5158cd338cee9a79f8.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "079" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..da47a38898aad1e956dca99dda9a8e6ce83baf83 GIT binary patch literal 590 zcmV-U0OLk$p>TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iHt-%kwB^SM4*uABV;&? zjE0es2{IZ+#>2?i1Q`z_lVN1?A4okPX49ZMoM;+!t7D~4G!4&2noq;Ck>=CzB=X(_ zO8V3qQ-7;SeCU$H>BE(!H&xfKKYDGAuH?uCyUDtMl|U|7sC|j}?$`ZkI#!@dKBWNT zm`K~2Qi9ZyZMU!Y9oy~8;QUj&J?nMa?H7MRYveC0q~P+}Cy+CdQHDsyFhdn4NccM4 cryS2Qft6o~APCRn#BUq#7DKwYe)tFg0FzoAcK`qY literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c93eee07b0cb8f72f70994eb4b8536fae6ba9a14 GIT binary patch literal 1536 zcmV+b2LJgViwFo(%z9-4|6guzWMwXJYixQhbZu||tyfEL+%^!7o49`E;XIHOMGwN} z;N8~IKJC~of+B$7AZY6zl0#8vL2#wfie8CSNNQ~-FwkCt2H>sgq5Vhw75yt6O4^4V zxN*7>3`-=3Gv5q9azFlZ<&S@ET*@Ew1!u`|0&c<*h!_VKc;CLb@Ihtf${xP6-?Q4U z*-2J4^MunFGIQONKs6AhS)4{JGs`4oAgT1iP+Vi#x=-*dT`bnT@o!wz#_yoAJ9nQ`*0$#*pp9*s!u&J5Nntjmx4eO#F&N^v#t<9h@| z5%)a_u^0letQnV&!Bn8nON*3q@IWalj|pNc(3BzXYU~WD^a&<9AU@Sp;m3IV4z~Ic zSW*G?2?C60Z#=r1*U~O0!Q$Z{jwFNV71B*SYJ{i50D!XbC z)eO-mREJYZ-5X6!`GAWn&VcuCE2EI6|ZQEr?CgwTt? zpMs~5Hnw0AUZ%i3Wc*wcS+CMKwkt%FBwzQD$N7RICrJK$Ukxd4sD);$vAv1gKw(HS z-fx+ylxNGhOSyK7GJWhGO6%IDyttckFHdlM%6wX~H2m4z9F0D;UC$EmCT3TIatzNA znf>%?@zNz90_XJElJD=TN_z*$$#uta%GSE}^|FJ{{nFZL?l|QH$4+pHVHVrn>Lir= zR5|#U_)b0$ND(_ixt0$js{_HfwGqidZsP|8nbdS1;Vd^Ntfz)m9IcK(tUDD1_TcqN z-DXlRz6p|k@Zg6h&+Y67jV8fUi)-a-HLSP=u_x)2AGI2OLh`8cLRV^Mf|pWYDdHPju+}t^PWZ9D{_cwa%v9udO=;vv#deS$9G_FF_Wq(`>pZfZX_F0!UC- z>1t(1aKJ+rWl-r6RdVCuHVT^&oXmW40a;(S=5-WnsH|yJ_f@0OeAw>PQGybpC8|9& zQh0=*g4=Z4ZYxWBW|j51kU-$bgCrMHZ_U+0=;yaJm36af7=$61Yo+8K_nU=h`an+I0M+{5|Y-p1aVWjm%sDp7jwnI#n5G8f<2Se=sEg_y?FZ=4B+CAeBt zt#pDaccr-L5Gwo1w(sIzA%_evUe+w_#Y}6fuHTvkypP4C-^-qS`}d#r`O7R4o+oLs zF6UP)l*?A$JFV@WUEB=_T3bGBG&i<9zun&Q0JiDF?O+QPcy5n(xU$T43B!=R$wEH_ m{2zqN literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_report/report.rst new file mode 100644 index 00000000..70b979bc --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_079/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a035 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 079 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 079 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012417 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_079/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_079/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_079/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ba79a8e5f5270a1564a072dd4313b23ebf118487 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOLKB}!-&J7=ed3mM|Y+3kq*M46~sTrYk!Mh#;eh?Izm1+T_>(RT$ri5 zmFkJ3mCLHbz_iTZlpFh+=fUJSTHXsCJs?VcjH4w#bOO^x@o*u!@dyTn)Y{wn*odP8 ze(2hWKekXGyzB9f=6hImJ>;mK=^@K>5a!E$$5cJv)zx6=yWwD{PCemO9QKZp9;l|F z<~Fx@-A7u0R17vl%LHeP(AN@YYG420eDwGBfBqdUA;(aNPtos$oFHcNLN;Gea$6;F zqm(aj;?{!=aU&*TBh!bO#Mc}0<7&MgN4NN%>F^NGA;eLx%CgjIs*Q59T&s5C=xfW> zHH!}&b5eT92e!v^(rz_N+I(IpZ06S!n2f(_81(P9>aC7a?KA)feu#9}a{V}Z=dmO! zyRD|uX@M8F&4J_k$Ot`%_uc(UO>I=0UA5h*?n(P`bQ4Bxl!eukS+ev^HI5eZxm=F) zv}C1OZa~jRUeL?tL_vgsJZJhQ*0?^Hx>xH~Wo1v2AFHjd((Wp8bmI^mf1^(M0D{>-fz-0M_tW+BnwYp#3RofEybR#cp2t~4362DeQQeMQ-`la}Bb{N33 zmEE7&(!yZK)unQ4Pl%)U>CSWjv^rI~HOsY1L#>yaHOLisbhJC}m8_$n2*>av>Tr5x}7_vXTak9Tq0Jh1|9% zmav=jZ z0&tK>7D{N6OczRDa)IV2I8X54EXA6yGx(UwXjH};Y80Op7(8UKO@#uBP7WpvK65GF zr2S{6M{$Y_3K@qjpTR7osu_!C5DRLZY4pwn22+`NEHIO)U#OR2-?LME%!GK%V8md| zV4uMnvlO^VsQ)fqmhPFf!9{IcvHey6*zw3oKZD4Pb;tBTp=Z(L>$-BLkD}DLJIRILDl492~DE7@k z+VC_#NE<#nPB9*PDGqFk4ew--HB21L_pk;+y+1EOIvg~fYqJyJ&|-(7Ip-s^u{J`p z_KX_rb~~MFQ(>qY=-VC20NOIp#m^59;Ql8U zo_%=q)t~$LtE7WmrqGcAhLZTK5<)38!7X{WQ>}uvuX)!W@Cn!973ABd1I!Eqdqxf~ z7KKe+5c29)|AD3!bZt}B@>_yhd{E49B2C;d1fa(^f!tN34q+B^+%929Qgb(sKDo?} zOh>mu1L)Pejn+46tvY3PzXRw zOL;E;0QPx_Sp_tq`lvqx-v1V?=slVOQd0tQzC6u<0+7IWpDL=xA=9dGrTN zPC|{)YP4b2-BmUj*C18y!Gapyx&lnRUVYjnsuz_`7xa7rBWk@>uBc6EPmzGtD%B>5 zC-bG?ds5wd4`xnd}9EJ}MhndwqWVpVT5jWQ|htH3GpGmSP zQT6_%EJ`YaN8Os#+-p_TZl?}z{Balr9xm}bP!*Ckeb?aniB7Oa3Pg_NJE&cHQi0-u zR2qv!F+5Vl`AS(StJ7}h!ZXWF_Z1H{AMtQp2cCAqqX{Xc@wB(ZkF>f}WcgcgX|IfD;7G86RkW?#O$iA7U(>(mu27f)DUK##Z zj8IMN33H)W*EM}Ow*?m*z-c=L_!Y*qEBavjpzyj>pxz}8_i zBwOS*IPxwfm*e`nxXDc(6xCuOJNp@%!7w|3UC{+jgo|#;^U)}I1N6lkya9qZ`^YeT z@~USN{}A2u5w^)C`nKEeCxb!gJGu*ZOEbC!H-jI%?iCN*WO*oTm(E{zHN#$X({#Kr zz{%^Lcl)zip9VZlKC%>3IWwQpKzb@l>kJ!5ErrhX+#`TU98KbX4n&dM(Fbg=9 zW~e$It-|Q)xfAP|6>u#3-AkUVgr8zH(C|sNQB%n5Y%Z^&5pn{|1$eZ=k*(AMx||tU zTLXx^ot492W$l9T89F#vaUG0;6)-x`Oo#khF2*ZIN1Vb;5w7X4a2zQe0?P(T9>zN^(m&l*C=CkQd9Y}hpZElgTS~GV@ z<@^Sp&xklr-gqQszJYYi5898G7lL zyd`<|y{#F2psE28!RMb6RbZbtik!#^F_5g=Ks(`*(HtES(#8D`?Daeaxf}ohLNt-8 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_0xdb296635772377fd94ba947dc3481ed2.json b/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_0xdb296635772377fd94ba947dc3481ed2.json new file mode 100644 index 00000000..41005e50 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_0xdb296635772377fd94ba947dc3481ed2.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "080" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3dbcc11f66914b62fe49119900421bb1b0ee32ff GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zGU`f<5l9?2wY} z#D&*%t`I~bd3eru4nNW#f4=hjKWmrlqd#XfJxPh1(v-xM5tp!@c`+Uknd>Y2@XmkB zYro{Dc~#FNh7*$ORbLRS2$G5>Sxj@ij3P<|7JhV+>rWqtjG|O z8sz%c`ROihHnwxU=wV4vKt-$dkWcsb ze#rGorf4iDI@c&uM1S*=GrA@#$Ugj^^O zKpF!{UxDpnbF2NZ(`YmxebXzrf}{X^C(rZ}IVL^;;>=>cUS=#v3Vr~D5}66-3oN4` zOVT3md*{Q|85XHTJS7Yb7YG(*C4xyPAu8ff%q1uykqReiu5TZ54>Dp@MkGLHfM*bG z?g32d6Otmz(oD&5zUwjfag3}(KO%mA1np*mRT^^@QxAFA?-K^GEEITPr!(jsGw_(V!9P7q)#(3BzXDCmr^2oNONM*&t?!pCU* zHne&%F{C0mKmaht-e`2)*3v8|g5tp-jHLbe70^v8o+8emGD0e3?Z(I^Mg`DP;Ibvtd|dR&E@;@RI4}gfnUuqTDzO z0Ktn%a0Z?P+L(d~@-idL2gc7ef%P&=60<@$P3^i5J+(QUC&bDkIk-y zZF(jSUT{R296yF1y39x(L``+F(q9k2Nky<_BfsLqgI1Yl0K@uP?g$5@bc^6 zpu(9XsscfKm@@N@xs;V|*L{9wN^3^Ety%E4MtEBn#oL|{Z+jNJ?GfJgMe%lK#M_w# zZ)b$J^WS)fbIeEqco#74ne(bjSwM~-3Cwz=+Su$sD4)k!!sMuLt5d6;_29yf%t50I zjt(lXPrrD5Is!fYa4IguCZM;w$n@+*3JtI^$oe0iLB8t{|HeD2eHU5|Y zQqWbZTG{1{z#$7VsPqUbx$zKG+2RmRuD`y3tgjpMI*2t;);O*Qve9U6w>x!^pa>}e zYEKRo9zvktw%oSc$}>-|(;nl3Aad-J)C#G$`dT6M?QKow-MkuwQAG6hQgV;_^}@6A z28Z=Rp<`seudf(8&{)ySeMm~LpdMGltHZC*EKu6!zG)UtZK?+sNp;%&u#UAA0$KyV8yzM-*xMrs#g8d6`I2nHp% zR#dHY0xEZJkt(~o{_Ji&1R(pFp40bvm-sx-ye!KIqNdnOMtJWUwaAldz5=Iey qlSe^B;C~qP-sA*wV1xu`L};(p8GGAzd?KI4*&q#gXd2G literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_report/report.rst new file mode 100644 index 00000000..a3c27acd --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_080/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a107 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 080 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 080 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012766 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_080/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_080/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_080/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8ed8f53b7a3548b8ca1debb184e81d1c516bc5b8 GIT binary patch literal 2845 zcmV+&3*z)2iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}@8`+YbIChe0CuuSnj?&apDgq=(krq`YrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM zGt-xL@D}u~zoCDr{VBZ*lGvqWB~F!S?BUtnyZ4^GxLBM8{<{3ne}A$R|An90hI{5B z&ai#t^;HdFuBT$e;lOnr&yT`;;(VloaA5k;57EZ=(W_`ZTvbNM!-iu=wMR=ccefKi zQMh*5b>JJO;h%A1Pjy|G9EGdr3JOB?G^c*qYO z3-Ko=>I1tTZ>ye*6~{%k;u8y~>=H<+GDYsS1 zZgKhIc5yow5wnru!A!#Sru3v*uSel+zGv7x>wwg+#+$`6sohbaubTrlE z1KXIC9`U~A@|?I=O_MgC74pUGW(?!;*A0XJy;i-|k*l2sVBZUn=9rEbg>OF*C3&ya zlshe8amN_gj)(NXg?!&TsMM53wb@nLo$9`L5QVp3)Iw=kJ((qmUst1WIh)C3NKZ?W zo8<=d{MPk*=}b<@!9bQXJOis-A41))b*qxRFG^38R#$F!3=7{EiJ` zcITkcs)+kywIcz+M~1a)^a8T5N>zF)x7x}q&%h&I7%Z?_5#<&n{BG=*c(Ya8iNd$q zFDg;^?qW#+k$S5(UGysL{D9KJV0 zs`4CEPpoa0i^ClGoItqGq=RrSPzjEh06yr3+h-1rT=?u|t%_g0_p*k=Wde!jCSiBg59r zKnHpCPNVg;Qfsu8c3B2}xWkxQ&beWlD({-Xz_2ktu-r8KCntiT0OR-!`^ZYekgu91 z0y*}40bB_K9M5a+AY3dn;9eCL_0hz$kgbhl14|5Qi6&(tKG z5n7El%(}PE7UKq#%6(W+qg$6jiPx*oy2SOe-06a!k6=Wpx5^czDelW6s9L$&BpHQd z-pI^OAf0Yg7GYI!P29gIY>6}{1^eJa*u$gX(a|uqzK?XrQ&YL(M(XIr@gGug6~(UJ zyHrK-$>4FfCN}q56{Xv$1C2ipec#0;o(HKy%BJt=TtD^+(Z~UjBlQk$SDsej@IX!) z%fvC&;niMz5#aejdAd=8%s++vWbvVD_y9*8PjPU{%V829;er)|1~4j z6T8D)=+!h;8!lXe3j}b|P5^#QF!hQ)xO{N%x^zIjNA4Kusn}L(_15EZJsO^cA66cB zrDQK6xLm2gISy*>)A)^mtNO#;ODDqk7G7?YMY#Vzj4KVhj$`tcYM9J%?k+@}9@nRb z)z#^(TKgJqQ3dY1pSWPW;hyd?Wyt&(M2@rq!0Yq%P&x=`%k47MGiZrH&j zUEsDj@-8Kl;rd#x$W0y=ltMl|`xzVlFg<{)q6u6M9&{_Nheq)mpwHgm4G`qnL%QLS zS3Q&H@8K;EVT(LO-*Wo>c+d|#TXW#q(hP6Ilfm=h5>R)9TeW&XOW8T7(ihV2GE zj$ik@)1SS=Qn2qu2j{CxOFHVO7T+!@eZxfSvlmdCDP8qd1t@Nm?xf)Fvzc`&TS?6( zq{xKSbl9-S7Ljtv86T(MpR1?hfxhQhDF<_;8s=6fj$soU$32N{^u7XRl1=TxEYMV{ zu4s6)4x{UH5}TePqE^w_%z+9$z*mqlU2|N**@lcJX+((rBr>ooEg~I z0Epb(wIhFR<3jKmIy_u+Y>fOh2s%&=oBWy%#%ssNoXkuSuE|%p4qqYRE4(S++%@^; zuERH%@Xfs`-~2WC=C8vypYYB9IN$jkGBPDx0gn3~Y&h$Nt)t1Vr`iLwp4rSpD9~hq zW#go;kl)x~J&?!4VdfYd9j<-*>Wgn*CB)~&2_BAPs|PWu2gjSK%R|J~gX4`9%q1aH zKy4l|1tE_wh0Ig#Q#9XDb)CEV5I@{^oyV+j?;1KiEu7 zD{EghG1^QGVZTJ)w6$1GZ%QCG{v`>xo?-jzYZb>vu*rf>nRx`clOe~$)j1tKozcZEzKpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z^6-4$Is8Z;{&L}uf3KdikN%v|>?k8{Ml+I7MqI-B=EZnOWT7wY!n^pr zX#83n7j?ae7*0u{uLOc%MUYf9%@bPaRTNVqun6L#LVx-wViaY92S~+&=lvL!D1|DEP_0?9PmwhY=3aKdcf?Mc|0cR2ITim6D_kmW~xN^Y7AWHZFO308TK=R4% z&X0v&%N0%JROeO76cG^)$h0-MM2e$`CctYk!ij|UWz!23NT9fYP_8s%o|5K%LLx4d z4}Qwb7__nLGoY_MzTTj667Wo&k$#j86g$2b`xe(qk@Q>O-8Th z(yUs76$SPgR`H3TZjYwsY{2*dLqj5@S@KDK4+Mo}hrKW)471>b)UIV%z-9tnfzz2tf|<&2tzs5Z_L zQ1BBHo}ec|HYQ<$yvPX)K=BK0P`%94)T|KBGP~|0kBg;7jzRo(Ukx#AsHJuX_AhJ$ z36N;K-wIu;&X#ePbj=o}>c~A1#EBeXuv1Q9@d_#T4M^l`r6y8 zaVCkX0camnX5I;xvexUl&rVF~%*nSi58uw1Z|AIhyL0mG&cnAm=G#3hUvEyn-aLH0 zF<aNIHHRh_bs96l77^+~<8=>b&0lRRZ|+_&X58Yext@FTO=>Vc!Z z+N}@ zjxk%Ferb){+tWvuIjO9_(PNISjpu4((J<%vgj4{IErJUFIOe^xL+?lt!{8w zFO_wSEOzw;V+S=>{9+e^(rc*C)#&Q*8#GInwz+GXrBfT~-dRGObw6yPDu-}OM3BVh z^fhw@ifLhLSPLwVSOD{xxsAQit7c5{TtMl$t5=}l7Pk0?#`=j;yDX+5^s7@~kb+BP z)+#4Z<*t=C9fU<+n)WT&E9ij2#mkuGeoB=x)%6>_1oyEN_5I@UxBvWUp1<@mVm3&_ zb=6+6pj\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_081/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_081/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..eb397c52f8f1da4491b7d524ed8a0e0816b58b9c GIT binary patch literal 2847 zcmV+)3*hu0iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=(kup^!rbUXzm|rG9TaKi`fWVT3gs)%$l9J<2 zJAFzAZ$aMr8~WOx)4$TYAcLUe1%)m5&j2?JuOs4kLcQ5~w`A7Gk;R>>KnQ#h!FJy#VIxD2Jc{%f-l-nw0 zw>V*YOUPs*Vm2~7m`S+akRDg-^(ef>_Y9kdd=4RxQdN?~R#Rz|o8?-y6NO)yj;5M? zU>lRtL*BPso)h<~Y0~DiLcW;YjA1ZW{yJ@sJ+4kng((m73D1HoHo@Q{5L2qVOh+S||;xC$l8+>uMA(XES6`tB+ff z+$=Ys=eMrkOJ{OI4hFKE;Tc%v`Vi_~ty`7keNlR>w7PP;D@WmtBXpRtqVSFco#n3l zSdm(LPonTs9xg8*VC3Em+H^K4t5l^Ya;vS(@(euUg~0-=6;Wi8oudohW>} z{k#%|?=6-T5UICn(?ze+&JRi6=9h35iiWtyj><3EFn49Fo|&o*HGAW!To)ff3a865 zdWAgyji1hOInsd1(hEthHY!T>pt`5DMc{NJD{Kh`vRIP8R!5XyMB(P8{Bc&`!@ZS0 zn8i{9f5_Fva%*3R!uRQw=>TYTs`S#V)+!C9UT)T)R^Zm@N?cdoPjAD8f7~Jqzm${J zu2k(@O3L!TlN?eyxbnxGsOG_T!&6IRwHl1Y1+L#hrY%goE7~80_XUJNaBmQ%MMa95;oM10YWT z_G8O@2~FbZLg@?6SG^c#2_Bp$SoJgppHLf>+L%L?;`2O%hYYr;k#Ew;{)EBj4#h>< ze{Q%GCrGD|A#8dKW+8RWL_CLF(CAE~cP=oP+ALy$nM`@1UV=T>O7IDj;xU5}gE50W z2CK|c;7LOHJ9Jr^YtROhJtiTVN~w(vN)3-G))|bjPQ#9j{;V`%E$)E9h&C*C#99~{ zF!Otsn_#zRQ9NLHLi?Q&#q8P^RxL0_ zrxcG7!xb8I(GIgv%gs}qXTvd#k<&}?H+}-`fQe>NtYW%;&tl++y6Kx5wI3NwKZ~i) zftf&^!ih#BO~!hH&lqMJvsz^JnJkPLOp~sv+H9Ky93-%BGW}LwrP$C}Y|zFjW8~%- zOdUCcL4rMMK2}GJ3GH{>04ELXP7*x9ZhzkRE9|^G4>F}MKA!`Sm8S`IOr2uS7$gl> z_57sap_2sTv72DuqF8rN2Wj2F{$dXsAkg}Y7No;Q2kupkei3s*b@{ zt}4$!^~Bm{xtPg-KDhh5`~sfA6{R9d?RptR!mXJUNP~R4Llr<<0=f9v(IGtl$pg1UrE44;jX_sZthdYd^<(wO)sq(HF3=A9d1Itare{v!i3NVh(u#c=X4Ed^Q zB9LPrP8TUvuV;Fx64FmEr_h&UA!pO&NDa&Ku$|p zF1t<69?UAB38#1hnjnvWe<3FV0DvDjb zf2oS%lfk2IO>FMBDoVFg2O57G`o4=xJP%TZluh5!xqj>uqLBk4N9rBit~{y0;enhq zmWgAyr3m>-SuQKnZu`PL%T2E<9;zPVVY~KS^^`{wa+Jo?-V#4jV}@4^)9RRdnf6RE zoCqMhwd!8CQho{*par_heFN;`8{^<#Z!InT$R6dYoRH{@099 zPwWnJp;yyXZMbj=E)c*;I|2AL!PG1I;PS!2>(T-BF1cf*Ct_Qv)mx9s^=Nn&epGqX zm6E-P;But`=Qyaj&*C=%uIdkWFP#YETX?xq7UBN?D6TZ@I*!R(s$nw6xjPVXdR(6# zR#&IDYVB*dMHRU3e&T}hhI{4@;i(jat3wC-wn~<9#Vdm0&Eaae>O!%DGuU>7x?u;C zbb;IA$h(wGhU;s&A~)GCD204__A@s8VR`^pMH9FjJm^+j4~^nCK%c+C8z9KDhjhau zuX-lYci~MBVT(LO-*)=_c+d|#TXW#q(hP6Glfm=jQ@C~m=?v@(C))eL&!O~ZBr zAIGnI-tEucVJX=6qJ#6*r6nEpQ;Tnxl)ho2_1O!k&6KYCssa=@O1D$+_xa2^m93;^ z6H;VCYC3FKWQ$0-2G8W2mre8rQM@Kdb#Dn3m&YBHIf&SVudLbi`NACJ~Jaw%1xE@uWd zHUJ`bckReu+qe*Xh7J$c92+Bl4T26-!zRC`gYnw&F()%qglqB@uESSI_zG{zH+N0G zx$E%FC46&l$~S*azWM9$%_n^GKhAePhm1@KSAgTb2OG}1Ve4qJ>#6ntt!Fm#5DGL| zVA(k7E95seSP$g!aF{s;M~7=KUw!fNRYH7ToZ#U&wz?max_`Wxx;#W&-9O$)!CVqD z1=QvdQxNj_QpoJpA%&|$3fBoKTpcoZb;#UxLguaxnZG(@{{IL`>f?IVKs@|H)j(Xm zDd}IR8h&=j>sQ0i4tf1*_{oq973e!ZwT+Q4OZd;Rakg@C%OX2f>~H=@wypa|{{79= zw6gY96Qj-45cW&tOlwDczE*K;1e+}Al$l46JDKe)`KmReLr%_b z@cE3G^W=?3e9YG|sJUV;&x6=oaRNV9J>jQUeKvHFMh=mcGth*FCVQ&kBVB@C`Xz5g xntg9;h94-3PfYOqQ=$Uu^G1QoaY6(l>o&+vc*v->hKT6m{s+`}*}}OT004hfkDUMj literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_082/afni_proc/_0xc1967b2724737b5b13288083144788cc.json b/Afni_proc_through_nipype/_subject_id_082/afni_proc/_0xc1967b2724737b5b13288083144788cc.json new file mode 100644 index 00000000..78a9c13f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_082/afni_proc/_0xc1967b2724737b5b13288083144788cc.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "082" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_082/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_082/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c45aef904e5beb796b95a92b8b36b9842b6109f3 GIT binary patch literal 305 zcmV-10nYv(iwFo)%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zuA-uN^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEF=2gqB^8(f&VmRB&6T{1t>qAzYY?y)N zYhdGbLR-c0h`@dN^kxi4_1!#%)7`f*JWK{^%ip=80y9_Fm$z5fICj+^DT*Vf_W=L^ DvZ0!0 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_082/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_082/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..41cc6ec99a0f32dc7692796b646cd73a526e81c5 GIT binary patch literal 1293 zcmV+o1@ihIiwFo)%z9-4|6guzWMwXJYixQhbZu||rB&T)95)cJlQ_1|vEzJ@l+uU8 zeX+s4@7!HlN(q#d(A0fM$wNaB+TGccd|GKMY47ZmK>HFJ&|B4q_K)d%|ErF6_daSU z7`g|yD~&Yso0;Ft{Cwkgw(~*xxQ`{zFLG$*JO{xgv_MY6OR5BncQ;P)?SJ#fzxcQQ z$ZZlyGw^PQrjnCftJu2+VH`BoF}v{Y!zT*?u}rIC!boMnyX%A}-t8}MwrHo*@oqb! z21vrScN;D5ZpKQcd{SE55^92As>S|X>1is|oCuhKKxofSpMK}vZeh7Fmo{&6X+ftn zhRdf>C9#U6Tp*;)lnR6Iy|9ZAAht@Q7yE6dGH9O(NR_q`f(!=?e}iYYyTkr?P(p8n zU9Bv&xW6&*h1-F1h!K#ICFZ?Y0}6?T9Q7awtBYVR*3_`1$nwhXPyTJLEve28Q8`Gm zNDHQ7m*FLnfn^HgxMO(+#?mbJ?*5sI&?CtWgM|l1EFFn zNU1Pp5KouT?q<~HLRrBh647`H5^Y_7GMQjza#3J5@Z&iGqKNyUhD^Ng^CQ~(29_mGIefrbe!&b$qqgrshI8|S2 z1;ekdX!&(@JIBP>qrSgiy;jNQy5;Sz;qmUp zRkR1J?fP0fL5|KKS!pMsceht2+K9e(6PrY5j7;5LcDG7$Ny*6ccu%YNs$E8hkA!EEM!$f-T8bM}Mp|Si<-3~S#T{a+G9IUmQ zs-d9ow=da2?{8J1tCgVZsr&waxe_|Esi{;>Thl7rGE3ii<94fALa3gY&{rN{A(1)9 z(H1}yQO2ze{p-Ek!ikrWN#wu&^6x*w^QYS;vNRbY(I|%)Hl)x%n{oH?a1`}My}_tI ziXKJXes4VPjQiceU^E`b7{>kbJWk0ve-%q6u9@@(QQYZ|Mp1V-Oh%o!3nLf}(#NA{ zFor?o-{Fr5mf?TG0RI`|_t~gB|w6D7t;;Hyvbz(=l+{(Mb!ESjR;HQa|r+d DX!eBA literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_082/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_082/afni_proc/_report/report.rst new file mode 100644 index 00000000..563e0d38 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_082/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a000 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 082 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 082 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.094263 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_082/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_082/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_082/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..56fcd33ec886dcd34c54208ee4596282be05f2c4 GIT binary patch literal 2544 zcmVb!>EBVP{XAWephm=FFKh=bSmi`DXsS{P%x;zLfnXcRd^&1xUbN zgu;PoAtLlmf&>x=fgeU`a#K0!=^_$4QTjvr;4kU->HTEY7^9G2-%A^hm*(cKEbOGo zz4NBy2s=1B5+^Oi_-`uY^jHcY`8J(`YtL&%AW$1NL4x*={H070?Cd-9fnjAo)Cq`nh~j zDnds=z#%54Fo3CUHF~n9?<(3;qutXxJv~h>9iZ2FH%)G6AguNDr-s(vd6p($iLkO_ zOi(D6EBVcGMLa}DA@+tMp$S^q)zlYY2NDfRp*YLVfH+wa;dg?m+SUDLyRPgia#sTf zA7ghL_hTAZUDlrI?T#_eGx(7O1_8=-MQ=mGZ)A3MuJmc4cB7Ii?5Ydg-~YDo-GVv#@Z#ToT_!xuQ^{4H&Gw z)O5L7H{^YJ$LJ{F)1`v6E|qDpG=J@`qQ6X&hv)JqxN!vADz`tM%Z#IupenWYu9POX z*~)YQw7W7}n$H6yD_ zE#3d`<)x*NZ0D;s-p&`cilwUKWuRPjN89;)HNe}Y{8q78C4MGfui7V|Z_m26@`b9! zVL!}pfns-Nwz5?!R7t!&2gB`ReydchS|*($nq*C>>H{cIK%z{uR7KNlxK#Z{h|Dm< z1&W8q3v7lKhu<G4qvE3alxU`(uXr*iJ<)aY}~_PY~xTG+59+7pNPQ z7%uVCagDLxU*LDq0(vnwo6E3CSp1>O!7(#4a4e=j#+;nT%;wNpK%2p-#b%mL>;*pJ zJhQlHkvrhBFy=5zx@lVT&m`b@0S68zcS|P2*yb^2jYCc;C~}w?@`u9(4w?GI9CIp6 z?guehG)ORA;3)|PCyhVBmv?J3U;XCm69A0zaDjctW;n#dMI$i7XweAK+XW_*V1Xl- zVLLb+=4?!&(-MAy*czPHpaKs~PPO>~@X_MCp?S(jXcKdc=IuE(*y(k`8@E0 zn=fiF;S8=Dbw%r_H6RIB=2RdD^z8;?038kJ;@yMSaQ@Q+&pmka?H>l@+e|rnH9q< zY)VFXqg<#Uv$$?c>yQN?cXg#pnZ+q?m$4(IwUZ`y&a)%zSx#&Ny}I6PzcL!lj?t;< zzz?@LRo6epj$?{}6A!UR#GxDH;GbRwMiTUsBN8Du2VIfrI0)$2XR{zRS?_gN-hNSq z1l{Io+>Tn)VA+-_;ewwT%l>2ve9O&A>*YDsUR6Q8-Jw~!^WAp~g6SYa=v_o0qqW~= zHylmXcT~!5zkENtjVy=K+ht0$PLZr%o?R5Vy9XBm$Z5486gKGHgNp*1aQjgAfcIa3 zh(2K@ptKYq=c}^{C;|EeNRD zQ*~hCs{Fi1O)u-+9@x19J%-w@)s2?2t1G~2b-6_|3dy{XpWi^by_T*(R9Q{jI!kOR zHKzsp`!mzNK8PP5jMnb&BHItmwPNML+QExAzgf$wC^L2YToq+EgD1U)(%Nm;jb2v; zH-0yYqJUII5vU3+n}Kf&gUlw(M(>6Kt#>fH@~jS*2YS<3riNilQRnM5y=KhB-kCis z%+{5R%n*t2xsC$!P()LDizYK^RUDg{hac)@)iJX&lgu#O2q3!+d8b#eJ%$A)1>TIhvUcnYMVBh_p1ru>_ z6pi3iij&omPa@BxVSM0;V03x3nydy;>|hK&JCcgMc$zB<>jHgC$>)WERjdfpjj~ZL z<>o&V9F1~ASQSeWig3`a1R)w{k3V03#N!X-IYc%N=_}7P{cCbLM8u_s=tX}p$U37q z^ei9FmR52FPKGf0i6@@YMxnR~-=vk3m#$XaPcCCGh$E6c_go*$pRWuO!8hVRHX5wK z!rZrf*M+0_;aZqInh^tBdbl=!etNiOn~_OH52{z!;19d>GeEoPV-%bpnRKqby><^! z?vLN!6KEFA=>ELp!HL#_zwQ)qM}$dvFy3oexiw=EuCWF`>wW z5i(t)ytgL_100gbL1P4m{WZ>?G|@iBI`vhY4};?V G6#xK(Vcw+x literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_082/create_stimuli/_0xa4f037b6d5ff386c5e97b1d3eb987752.json b/Afni_proc_through_nipype/_subject_id_082/create_stimuli/_0xa4f037b6d5ff386c5e97b1d3eb987752.json new file mode 100644 index 00000000..1fd196b7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_082/create_stimuli/_0xa4f037b6d5ff386c5e97b1d3eb987752.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "082" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_082/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_082/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..45d4c8778bb13cba54efa8ea1b008d28bcef021f GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zy=E=SWa}_piB`FVxLS}gG;113TX_y=0hAycwaZYK!Ny*3kYSk9`S_K4`UK?p*$dI z3?zL8wu{ZJ_D;uAUpBphD+mh6ck)axkz?WmAt)1(q~HfgD3KXBUtk#pS&|lU z-#-smXIP{X@suz$Tp(DKl?W!Ggs6x^GM6BUL@J!5xxRDAJ&1@=8Ib^)0iFTc+$K!w z6Otmz(oD&5ylXM{ag3}(KO%mAMD13BRT^^@QxAFA?-K@Cmml|furg_!!D_(A4?qY5 z?|XtId_a&<%_x18oB{fxw8$7EK9LfO69n7}HYMa;1)UKV0fIpLD8LF!_!y1ffmSaj zMpOg`2nfd58;!2nT$<%XkUSWKk+dJb0=Y@WQ^Xl$Mo5LM-I&?Ls30O^aRdgn(d&8+2>ob1D(0~YOmVBJwBSB%=VJ{2_!^}S;wVNpxu$e%epeB>FaUyP~ zJdTl!&58w?z*a_jt_6ZQ9)uo5evFPVg$O@uHjIkQ%8kJbFPUCWIHP7E%8j!C6ug)O zXXr_gjY*gwFEhe?Q2bmIR4=n6F)M`A)UNx`<9wl!QxL!1R|57&XERjEyYmtO}570x74 z6#(sF%FH|FQdYWM_xYJAtr_{YX5rf!@oim{Z+k|*?OFJ?M||5C<=dH&Z)X<1oe|&8 z|MMNrF(U=xUEsK9&Z{bA0XcpoFzbz34dcf)yi$hcbX)*P5?ARVAKM05bM`wnDtI%I1)WNQ}4)^y1B zbjbEBknQP^o#~LBkAO7#m`x4F!zWUMadlDBpGXZK3^}_RJ{WR#HM|${oC2YOe$O#x z%hRu|adUU_$TBCD^*4OXv9l4HK?p{Tn}WU(cEr#>QI6rqy$uZa#-OZ z1Qpzt+jd)d=IJ%sV_XnKj(w8aLh7x)Ruua7wkGp#UX8*iBKmq+a*z7;!n5)QhxI~H z$H;tNUom!2V?{6bAt=3qdRz^!4!=XQU}>BCrdc?(p&nc$)M@v_Ix2Grw?qU`2FDN|j))eCSROHj|tpM3YvU*`E+FCu1xG+dYM z6${E`Q{Fqc6E@o0-d3;~hV7j#f0I1i_L@PPcn^2Bw>LpNtJWUwaAlg!5=IeylSe^B m;C~qP-sA*gV1xu\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_082/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_082/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..aee768291416a120bde2fd1196dfd9bc2b57f256 GIT binary patch literal 2850 zcmV+-3*Gb|iwFo&%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D64{cSIChe0CuuSnj?&grDgq=xQ4&=prbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z``8)06@BY#U;ETQ(O=QO(z_sqT}oEsREfqOp548B@7ars#aZCbi+}&uXA8++^toet zXCC5ACqRB*(-G!+8b%xrJ}0Ew;sd5kVbn)9~*IW z$PZl`@h2AQ1G^sYXugM4*F%o#nI5uC2VuV4cTCmuU0n@^z8emP>XZqu;;?su^guNY zHMb@3x{tH~sTg90mI-8x(AN?&wXgs4_P_7<|M@IhLXM#jPSJ0KoFHcNLN;Gea@!?w zqm&o9?cA1F5MyFCGJTjyxZaYVRO|IPy2JNOhlhL)A&+uZmZerxZIqkkTD22LUt6xO zS$yc2lhPwTusxoW_NrOZ=JP^fGryj|Wc+o*;D4`GZ*`PvrvW(dL!`Tw>&MZ%Pb68{ zYc-Wl3s~GW2af9_BlIBO_YW#HwNY($)pn=4FCE0uZ5Xvt7FJJY$#`Pi8gIc#LEBliCL~V7Ic2|j`TSw?HXUEY!89K{d z<%ue{_MXPkXFOb9KE%l9i<`Oa;wFEJ&V17u@R%fMX3K7*aT0 zmf0&7_-})($cdx@ljWDPQf*Y!>Opl+ZA-xER$kZ;ie#}Qf31$Byo{suEBWK>Fo1h2 zdoYWog~5=kOXb$S5Jw--E7Jkc>Qw2aS*}$YYQ5a7L9M{8)0MfdvY*|83;(1=7Jels z%U!wJxssH{*SWY;m(`>$<@n&gw-*+CyqhZ-=58*(BNj@QlYnB$9`5FHCC}U~mErgIzztd4lb!+s&OqzJ$Zw85rz}xt)So(lrty7$;4kaxh`=xl8dT z?LRj?ic@4z$Pl)C2D6a5W+I+LE@*V7(K{CyOl{_|z)YsRP%p*4XQ%jtN%5G$h{2e_ zK7%!8Dexqr{9U>%-7{%}$sUssU8B^-CZ&eQ6dMdi*q~uYW`9J7Uib z4Vd{o+e@+6vnd`h*rPZYXepjB_7m2I@ei0bJcp9Nqd9y|xiUtcKB4{Yh+=kabE_5@ zqf?5nlZ_}d_bPRK;FDb_Guzi%^eMBVf)o!XB~rk};s z=fFy#LE%KFktSm!#b*pNomnli`%D%_45mrfG<~*B0uEEyx0rsrpiyiZEH-K5lri!| z22)4wV31;;nvb;+V?z5~FT`mBdy^DTu-Ct6{0Vm6o$Xxd%P%ef$jZ|cyOu$*Zw}Ii zr};tJ@X<+%@z_goU{h>(r-Q6v;$Xgq4G`-6c?;6vpz&OrodBB_I}FV^j?l*12+i6v zX|UJrbgE5-kp{J9@+iICQQ_$iTIInd=?a46-RDwA>6YtiwfQ`bKD}h%Bhau$I911B zt5ntJpn4K*v$&bdfj+qZqWlt`!4M8ch!6v%>nyGIp3TL!uK`OzUf|H%W- zK05yDkA3`A(m@`k(2)U!l5kdupp=?GOWx~Ls}SvL-t`B3qIGx$`L^kRGQ*&rk;98c zVN(}`yt>`r($s>kZK_&+TTqKz#r!7H#0^8(fGmKxt4JN9EatRbqK>5IUL1XLRUMg* zZiNQOtM?kMZ`4|&t+vYw=))bx)OOEJ%hGty3J0cx`GM_a;XgSM3NV{#zj@G$ecE zp385+bzWjt0Zll4)SrXye+yRhJ}m*MDSo8sMBsbR6jf@dAg8-^qWPyf`a`BB z;f&B~v|-l$Rkj${pi~~ff*Rer0!qAIebyze7nM#I{Col;%&3HWdk0mDI$8%fgmOb5gJmFNHlk3LhN}GpqZ^aD6Q!ZmwmHUL5~6lT=aS z>Vqp)l$;D6cWY8}zg1DYojTC?{V)hTT;h3 zgnD9km`lC7uIa zlH7q7dTVK2IE zI$jvy~H63E(dMAmE(O02N@|j(j z1)54TR2`32VRZF^#Cm20h-JTf#gmorQ>+FWKFv023YneFtd@tsZktyK{aNPG{!&x;Q15I{)%^9H8+Bt`AxGKSGlFxLGw24?j~i z5La(X`e&+!pB(b$)$o%;-n<%qG~`?b2JVk-W8}*c{zGD%uUy`;$WE2`yZ9s9*2AOV z;d*9TS^JuW(RyYG`z7+Ht@&ztQv!+c&q=`ZO($4gskjb;O%`;@%p=I1+?GJTYR%}7 zlk*#VJ|pHldE=2B^9>AYZc{AqAoiBrFi2ES^x1Wv4LzijLuBO)G@+?0zGeoKpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zFVqko}7Nl^s&@ zB`Lh7bA=!h$;0z~=kOza`16(D|G9C=KKgS;laqwF2~9{u8F2~gnHS>$k(s`70PpO# ztny2Cnw9k;VmKz5UiSsTiXf?IoJKU$t0<&IVBv=+nf~-~mr;}m?jscnp7uhNqh$Ir zqCuu_pPlaF+D<#u%N~{l1yp2u!OiqlpR+FQS=^|P zEo{T2J|PLBEJ>A|#Jdr3A4kYK^h4tJ$JB1cSS1lx5%rLV{XSuUb@_3x2P>0ADXa#3 zdR3GeRn4?Iz65jS3=CHW|H@ zO0#MaRutGLScOwT-5X6!S)cJCLjxkDS@KDKhl0Yg!(JE=hM7MlwVMeRu$e%epeB>F zNg{41Jc^Kv%!&o6z*a_jp#g$99&|m3{1^=}g$O^X*NlqH%1yv?FR5OQIiqGFijA`b z6ugK8Q}iUr#w1LTmnmUBD1M<1s+VaTn-#)IV%L4-aWU7(DTv?hs{w`$wN!7^cH6KG zBtW9^e#>;JI9tYD(luL@suOo8jB69}@_x#E8{qhqxmu_+{7K&&jXpJ9&l2KK%&v8d zF*rv=_T#JNOP2!DbK%b5w;ZD>lk3V?s}4N(3u~vo=M)nhGr`G+X>4|@ zlVBEL>A+tSICh{bctiQr&q3vs^1!Uk=JJS{{+ua!Nq# z!RyniiKLo;BM^Q6!S_#|o7oR)bp)ptQ_@v(P;zr&Pr@laDi!!7$)nN>RjQl=FTM^B zOPoofN&wo!l$m$Lr7U$i?(?ZBjXC)?=Hc5I^KD#|Z*xw*&3X7X$9$U?<=dK*Z)+aD ztuf!$fAby9F(WzQJ>a-+&Z{zI0XcpoFzbc_;GOji|6$j=TNC&8m5FLQ*yaQRE4cV9t*_a2i zF&nZu8?reMWOFuTYc^!-e?S_2%%=w9;UlTRxVk9mkEDhVhMZpw9}GFa8r}{B!xW0G($TBCD^*4IVv9Y%L{#bTa#HQD~H`MB>H+$a*zA<(zD_Q zhxJlk$H?qJUom!2V}&mdASk_tdR&dJ4!=S(XK9-UrkOjnp&ni&)LHk#Dk^daw?qU< zte(GSu0Sy@Obu&+6x_lV-_Y2YDz)=s8bZHu4h&Lo zEzerv1ghM%{HBAj=tZOBjaq rO%?_rf&bmG_a-9{10y5=v(Z%w;##!2&A$CB_1u2}!Cszo>JI<_ORd>q literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_083/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_083/create_stimuli/_report/report.rst new file mode 100644 index 00000000..1ce2fb38 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_083/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a086 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 083 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 083 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012327 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_083/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_083/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_083/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9e9c310603d803ffc9197f980c9d0d628f7298a8 GIT binary patch literal 2852 zcmV+<3)}P`iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=xkup^!rbUXzn13cfTaKi`fWVT3guh?`ic;cE zdzl&B1-f1v3IbA1gX4u_uS`avAsmCi@H2!~b>{}8YJHGUbdM$76L`Pg)wxc+cq z=I&PNCyrJwyAA`>GJ{j@#Me9zCdbk8Zs_O%aq>ePE%~7nm^O+>3(<{7FfgLg-qufy zINIk&u8sI33k`r>pLaCh!>a2cNA*k(S*C+9Ul};2>iMp&1|#1Mha+{$gjaFcKSFw- znueO&6nWi8T7XmxF+i^93dM zpe$~b^BY{gP%7m%V`4ToeV9qO-jE;H8jU!*#rI8zhkTA8k8(|xrFKhgR$7&Mts6&Q zS+1^GeCU{y@FZh?E#`B% z9O-GxN~_X@o?m-GKbsQ;5eD*{>6=*N1`z6Ay;qZ!T}ghdwtGsar^L~X1GJyBFl^f5&4>B+f`{-s&!=`_|UYs&3;H0R;|fTly*m*uogb3ConOLPC>r7(JF2|sz}%%1?bOm7sM#A&m4@^P zQaD|f*)JCOZ-T7IiKGFONAJ@s(*@A(*65{Ku2-9CqtdEFt-!6*lewO$3kyEp&Xo;wJD1-Q3uVhmK(TC(wsX0%XKojA zTcTLTZqmO|HqJrcm=0~_@@1XDuAksM!S>W`X{(Sg<8XThhTCFpt00zjjf4nJlBQ60 z0Tc+pL1I}bqe(JdD1X5PnxEi2!Nao@Yrf9lBWj~j8*8Ldd{$uah`}~B3M@J~m@xRv zrMN`<&rFZv6d4pUge{-JETpcPh-Z)s8l7qM&jbcjn|UlSlPNFMPqFXWDL!ISe8OPF zV9a2j!5Xs^c#=^5E?t)HnY6)Vk4cEGQEDe9rG`%^HW-YsLBo#C!K^f4E#8p9h&F6? z#GV@(GV}YkmtwDPQ#@p_M{zLJQaoYoC#((QA24lr4kdxdbNGyMWsE$1Li^n@#q8SV zRxL0_#}uC+hATAaqFrX8wpXCIz=mTQW4E8;Z-Nv$ArsA}Si^MvzRkcfbu+MZYCkra zeil=oLo0;_g%h1dnw%IZK4qBc%xaN6V6re~FipCq>9cJTaG1h@#q`?+jbhVau}K@p zjFBfYm^yNY!xa0}{6rfwCbZx6LYy|RH%ajXdxP`FpJC_SdXOuB@%cFbS$Ujd*D@&f z&0*T`G(SiiJ~~PzbOk~3&NHd2^ePRt)_N94pIk8T5olN= zoT_86Rch)pP(6vZSuEvppbzdoue^X~a8<2Ja;H%Nk#K7!1+pOD?ob8LkwGqgcCZi6 zfAYYy4-UWl(*S>&bdZNBbYwuGB%D)J{bKeYnM#+U}WYSsL$I;m~w2KeW9p{3j=ZkpScP6bH!8 z!cd@D76Li;;dGI5P3d)L-hNev1ijD7xSd8thRe1{1Q+~FRrY%m&|7v^*eK4V_HqNv z+Z~dnkH7ma6_^&nm>ftrJj(n&Ip)X>Wv4;Z?I*8Rw}EaEdAmr2)||-t&BcpS>pp{n z0OYis=kl9yotKzZKod?Mjc1_y-+~prM@v9zNg&Rbrxj2D5%}&?MU|Q=$mw2#X#S~= z{(z}TI3u*19hh}@l`Y0KD3yD#pk}Y3fD&)ip7x0AMWx#VKOe)0+Gtm*YD?NxBv7?V ztwk~l$$Tp}JArh2Ek%M=B{gyHqOc{>oD}T+3t{&U!iNW=%<3*OTwlwGrM1k#^TXd| zk}67Ey??2Sl9R!sUR`SKwySEd+W;DW7zKfc%RCQKg_O;}HMl|I6QYp=B1h^S+%7$- z!r_6OG!}_txTOgBYDKB2({AU&JyY<>muUdHu6`+TP#(e|qk{e_1?{6(Eyk-+2rB=RBeKV%hI{d{3e>qOC zO#drJs3&%ZxzMZYnm(Gl1Q!V4w4DO{ieTCmeQ^2U;C1PMdY9ZW@)N0})*J0dl}0=| zjXtVA>dEO|L~x~Ag>xL#+-J!f0Z$7?+m}v+$t}FttVnSGf0R@j_FUKEZOycp2oJg?&qw3r4bbOr@CFF- z>?6bU$*Z18{C#xON7yD0(YM{fAQ=oo-_c!owzQ&K@MQ3V*S+EqH^fcYjh4<|ceTQP zbklUaFu=*{o_7bccUUS8{CMwdd11jogUtNfC3Rq0Xm$1iYCU6Ufu;h*wesx@{Cz&N z&g83^*@O(4keLpfHrXOF9y#OV4E*zqOfoR=T|47qj#R_B)sbsD#K!fG5*uTnLYd?< z+b|0>m1d|q9N$z^%nA_8e*2OqE8(YD4K#e5ZPpbsJDba^XpEcya{(T&aO6^I z0bR}vtgQh=-uB8tu(Ea`_zdmuuec6I!3qQ&YNkVeEf?dJ!$VGCrU=*MD_n=Kkn$DY zl&^SAzT$QGiYZ_5P5BnC$+vJFzJ-);;q`pa=a7*p;VN+4^swevNs?UZV(#avRdJ3A*)D>Sd17yh1 zOTXkT$+Pcmt>^<)4TuRo|CFeL`n*x(L{5l7WZeeY2@e^~(Gd|{-2VX7#5{Pp8~^~{ C=$aJ( literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_084/create_stimuli/_0xcb97cba9ad63b78165ba4bc4bad657ca.json b/Afni_proc_through_nipype/_subject_id_084/create_stimuli/_0xcb97cba9ad63b78165ba4bc4bad657ca.json new file mode 100644 index 00000000..5d64fd43 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_084/create_stimuli/_0xcb97cba9ad63b78165ba4bc4bad657ca.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "084" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_084/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_084/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6b99cb09e4d40d4477f21199bac7a5a3affbc160 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zXT46l{pv4hjr?VW6kJ~W1ac-a$`HvIW~jmh316rC cl;b%ju<{EL1mUMR@!Q6`1v0YXs`v;101&Jr5dZ)H literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_084/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_084/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..62b2fe07475798b44a9520d86cf518448262410f GIT binary patch literal 1536 zcmV+b2LJgViwFo)%z9-4|6guzWMwXJYixQhbZu||tyf!b6gLzmg^(MNa1m5hA4bbV zcH1y}C4p9`LW+V=+w=h*s)m*2neomzJ7W*FXOn;;wJ)ehe(Ut1?Jw%D=wIovXZDgs zTSAvnlo{K{=X~e*v-k7Qmwx|e{epe;=ZvN&DREPpl9)2$5*C^l;{lPmzO)bT{I|UJ zOMaSH^&(<8A-TTh3xX9vQqd%fX|7jMM2Wz{k4|#^>Ej-wC>7jCDiS;kBUD7m^+iO3 zT;Du9-NlWaom?+_SP~Rak?RFF*Oz_HdNj0gmtr0QtfF!4h>LzN=0_+d0}=zsr~7+9 zy#-Xde|q^*5DE;j(Ri(T#G#%OL$*3y#RsuiVH~PT0P4A^^k}CK4B2+;^Q!cl}Y0aRs%l1 z13(yX-w`C?1A+`|M&+YqBG6~0MaCHMiIiBJAi!3jDMQ{?&>3M7AV{>20<5rvkJ0!o zXoWE`q#`HbhXmrEY(kv%};=v${r2Y66&`m0yBF>;PLMmkK#>l2d1rZq=kKV|n zS+y7|3g}a;qKTyL45wzS&-f8T10tkZ@^O8S1chaXy)YmQGk=0=*HbKDGXXn+O{Qq$ zLflMw93vT<6$>(fEsgX-3kY*O=y{O&F*?E&GW?|3Ff1}FHx6ES$@FT%88r)0Zk#26 z;Kd}EfG2@AreK1+%n0*=@e560z08uttPoC9yY54eiv>qcf&6w~4KQq|rDm(~a2vLP zgpg>o-*R0k&z4b_bj=o}>cl+~#lI|TrOD}{iLrCN1vLmXDRW=W>r? zNihqsbl@)y96QhxJaM>m4IhS9hnzBF!_z}+6Z8-;sp&j|S*|6lF9%f^tqwtKITZkQ z@AYZjWKu7_5s)|_}-^Wbfb@V3s2w>>A`_B?poBfRbN;_b|dw=)mk z&IoVkzwr*|n2`eTE@0d<=T()mfE+&(n1!U;*y=zipT}9k#sSaN$ShpwR_K z2bI^SU%WmY0UweRJanzqrUkXx-E!U?GOjkeH3#OJkPbi_Msy%#_nnZ<*&$oAL$>A# z*_s`)Jv(H3o{;U?Av?1}cK%05!;kscU_5*zHW*ju1^toO@WCPHXTt}FoSzNv4S9xv zprGG#j9Gd5r8REuP9It3q_X~ok2$tBU#QJ3r(o8e5h`0w1m`6YMe8h^&I`aAe@p-= z=qgpM>~conkOdi3dIXi+c+df1GlY}tug@Xt>&CneVhxlvj_ZMJG@3i@P8}pDLP~(z zlS74v5Gc59x9zs_%+nh*WLywLj(w6^A@x>YDTKbgt;xKbSEF7O5q-6k+@pTI^sKzW zVZBu77@6P=YH( z)k-Iza@UHR4#FaorhOas3Ob^2@iJzamr$jQx_+yd;69e1(955E^Y\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_084/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_084/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e02a33c0005ded2c8c4e1fb0df201fc5afdc3c2d GIT binary patch literal 2846 zcmV+(3*q!1iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgqz~Q8Ha6rbUWI%|8>MEl1K|KwwEi!e6ieMJaKo zz3dF`g5LERdf5l*3-ncb7NoFC$x56m(b&Upch8>l?ZLs~Ti~yY|M=IZ3+Z3{nQQr{ zKH@AlM8QBe5a#+iMjVcO-wVPdzAK-PbP%e!pz;R z%uf=pTy`CWmTiTn+)1GOK1@#H<=x0NLgM86Bwh+4H?$m-j27Y>k6~a$qrGjMm`S|P zk30wQM>ZM&yFTygfsZxMN3P~uKC&$rVZJhOEzJ)+LkmZN7Y#?+lnJllsDFfvP_s-; z*phf7KzfKY3^60y0y1V4=qZ`{SAYMv_x;9y{v0nM*Hj6o__v}U7V`x$UyxMcLAkh5 zE^Khn^`Imq#B6K@Fq3e-p**QI8cBSM?^`Yp`5ZwWm71c+?UvT8v?}#lH;KQpJwvzo z$h9WrM||k`JSXqe@}$idL}|0Ip2Bqeb;IC)r`>3G)mpa+I1D0Wc(xZL@jFjsMcrw) z)NUJC+_r|U7a%k8A>ViRs&%bdYxT5Fx3(+qCGkxdbx>GEC_-?dfJNG zsx+bJ*M8W~3q`RA0|m|sEUa?_2z9UCt10TPtUS@$J+;$QllaB~+83N8zN0{ArKdj8 zl=jZkB>t3#%gaX?1$=2!cu?BpkI`vhxkDb41TF0!2)YlS#3kY@1%Z-H&=JPB!0W| zqMF3-&6gAqX|(IpMK9CN4@ut6FX1c{4RMbhRbO^s?$U{VYU?i4?2Tt?Lw*b?oG#1i zmn8n1Fkj?~qydwamx@|zR<+t*ZAa_K!0ARo+z?A-u_S-(uB^UH;`K}U;; zi={{5h-=7|_O6)3@6#*O1<>x+=%rb%SDRX+(yBwPz^&6$xSqP3-+~MOq)irnDJRQ4 zrPjTal*QM%xYba!v@Vro@4q(}76QC2luc_}C_F4mW!p_bsqBol1)=O)+mi6GSS({N z?cXSy=b&#+haL)rvcX_4NO6H+XX>TJQkVBlo#q}IPjeeA2BIDVK8DaW^lk@ zommPzNhp7hF3a#O+F-KBB*f4uwG)d{!zUD*3`W?bVaL{BR+_LDf5>1&8xA|-%nc2h z`F+RFu-|tm9x~XcI2`I3o-ps zicb*36&iHW90X1P;aG=(wkikp8lX!?p=_sAV}VME_c;lrJ>bY&y)C*3kCrK4QobIbquy@ zO?wWiC)GBKn}PuP;O>jcOLzuXwW_Ri8Wj);w`Nix5Ay8}RRA3Ytxl5GAoVH8Vk=)uz;*T$@Bg-}H z$OL)yZnOQhR&RE+PDKTM_>eJmyfe$Tb>6q5q2*$J==gc~Pfi3Q5ytT;4v~|Gp-{JN z1aj=d=^~Yy+UwA~{i+NJdY_eXJB^A0mu-;2>p%uyQZPJ^i1PhPKXL&GNWc996JIg$07ix;KVeGUf!$Z5I2 z6}HIPgINVM;q=jX4!Zv>SkZg51mu4yHeF!@~$d_s#R+(l2J(J zTf*!F((ScW8CI3n#J!8cmPm6_u=g*7-9LyP9gK3TyU6qcJy+aZ%N@Kp{9P`sqSV#< zm#Qc|89eUQ<<@Sys`a`Jpz()M82Y%(^B`47*$h0B8>BuV8aW_xq~5{p($gv&9>_^! zkvN81ijc2X)QUFkb}!ts-1NHQkscr(w(HQ>k9jm9M`=9mE%ReNWq8#vt&XXeY0nhH zi2$-&ukG}zm1j@^Mr7*TH^45vG4}rX*22OMY$Bx8$``6{#&lYTzu4d}$LY1{f6WN> z#O^Q`dJRK2Mst_o0s)-0Gk{+cOuwQJE*~7cE*((sk~>CuDtEMcqy4zjNJgjeN7ctY zCEJS#u2idVj)R)}EPW&3>)~ko(upv=g%_I@8Sej&(n`a==h?iYTQ+l?y8{uY$Mxx9 zb$NQL*1v{ZRD=8OM=ls|`KRFso=Q=?Jo0ep>SP&LydoIg94*JoJ`_7RgKbA_SZ*}Q zm$(g%yh{-TZeSEQxye>ZD@pm;&xsX|@(Q`uq*v070GuWLg1v z)iX){9^VWQcF05YZErA02g4|E4G*3zt@su^8G`VKUhxzPk^s-JrSsQat*9U0v|K+5 zar(OF-NEb~mWIP1**jZaSTNBbH~)4?8(214oxOls&zX9tYd~?Wd^-n!pUtv)zT(MB_$k&x9UteLb(PG{3k400ksD$z#N!o?TuMEp%b9_- zHGs(9UO5O?)-D8}q5b_8&&4QQfuKX(a>=jlVZ3s9$f?W}@tS+lsbzT%tmEnbsv z@j85q8QgDdQ{sFyHezWMoRX3LJL>*l<=Y*F=-;KzD~|RaloG6lk)@ zadFmHlGfH(59IN%FC2oS{grQDeevz9jQDwRf``M@>V8V<{^5G=@(^)#|8Ok_b4kb? zP&<#9gOG=pLKdzLDPA2?yiQ2*>X5~&Ll&FSWu{}GbZ$Mvd#c=(yBfw+28 z(mzu*{N#|=uZEu-^7_^Aqao)iF!X+G8zWzq@E=p-LiOU7MRuyx-}xWew(cK<_t$gN z%G%X!jMj4_*e_8qZOvEHn-WNke@+5^V7cMyO4V}_Y_gzJW*$NA2wM{Qsx_lSPR?)e z`HYzJRhu&q~BF5XKb+W%VIKPc77@ z{ujlYS5LxTL_)TiYL@&XN%tZPK0uD~b$lWp!gkHlJ$6pRH}lQ!o3F#~-~GK!tz#Ze z+fFr}Yek&5G5j!Sk?mC8Xep^;C9>c;;T>VzmdJIBB{aT7jCwjq#r+KR#ih~K4`X9> z1I}&KwEc*(zB~I|XH~1Mq&`oBV!M@0)c}5-NPhcw8_Si?vnQ<}D`qhqC3_6d_(My; zO94IAFR-H4IHCdp6}TM{kD>=E$<2IzQMKGUFJJ{ChLfEnfzbMS7HW|EUatHir4!Z>KE6L#U_ZXcQ*)6y}Lc%8PQI^@7+dB z4Um*;?^Yu3ZYD}*d{lW`7ixrH>cQ=)(&J31DG@LMfzY0vKK zmK=TDtSF^~1dO5jf*`gUP2=*R#YskWN-)qdNvWjl>w-8WVhL`lqyHkMTD7RatxHRw_ojz*@~;c+Lgg0D>r+a%l`F|ZA)1S`ju2u2=@LAHvcoI+15^xqZ3FMr<0)F?S+drqHn@Pk?0(w-fYaG_3n#nJ4CLcuu#!XO{dcx z9`*6ydxThxWH&Q{6M_UDL`PB2m$BRBBdIhHI8UIcc=X=gs&%evQO3XV`z&LOoiPD! zr%|1`&Fwr%u@7~PeO@Jty7ih8#-F;?uo}t6%2N!_ZIh9*GY$O}hc(`6cp8TF(N)kd zuM_lt^~g49vWcCNU^?4NU3L=%MTdJ_`7{?Y!L2fMr1x$s*o-PQUcXbfiK3$`0m8xV zlHAmSg0bJZ;s>L@Ri~~w1Vhi<5C1Eapvb17Qq^ruRLL^S-g)D;>s~^r9+{vk5AhnFp((Xe+6 z!yz4X9;Zj$6q4THF`V>h?*uijT8~|_sb9^Kk!z*Bew=iUhQqi!7^K5a(uE-m``O7b z?jJ)x_V4h=1k3S1Wq|*Tar{4H<98k~r4k^;b7$QR)4axI3g`aYS7jXi0|fN($#V$+ E0BzKJ#Q*>R literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_085/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_085/afni_proc/_report/report.rst new file mode 100644 index 00000000..fbf1276e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_085/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a044 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 085 + diff --git a/Afni_proc_through_nipype/_subject_id_085/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_085/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c5e420dcdd2f02d2285bd93de15fcc28dab396df GIT binary patch literal 2890 zcmV-Q3$^qgiwFpT%z9-4|8iw>b!>EBVPmHs1Vm{7t+Ot*H~_W7Bow#)GA~x|^Av zI9k7~It)z93{Lr}uX!GHj-$21(9r{;*j z8woEhGz9Agf}{B!R$UJ{s%Lu0G9844>d-M&&v$h-82fHG8mp-#f{MezOQZ*?X{h4v zwxFF0f*nTaYl$6=&;P#k&+oN=|2JAij-e29q7MsVp_t1Ta`}=X-metP6*143i^W2I zJ0@Zi(}$kK%p3Bfdb1fvH-&-e2oTCKgix-_veap-t!lg4sQ2RNbIa8=O9&lvR(T)< zwkPn?K|M#xLcUPi$!{evX}_u&^dEGZot{$fwEzcxh;-L-{WyB-kt8bzowm~JfEBmQ zk>mQv2t5e(o#R?VZPnX-wcD#7O2=`u0jp zrFu^W10R_7zBveqW3{^cSm|`td7QzH#4&KNUXzp#1pIcQmuPb|$Bm;myH9Iz^v+^7 zfg#OKBXxR>R=!8#c0Pskq395I*;eIQ7y7PFwNp!TAYE@fQJT_22x01$IVhKeuYz2W zFOmXumY>N=y;W1|$MplXD}hZn@`dd}nK(=0*Xc>hvpCwi6hGb$16WqMxO* zRP7uV;^D{!xcGekmqveYxJd6qMzw zRNQRJYLb_7eEgr4r6nKlixtD%7xR0?QpIu-P_EeHeNn7<=6*@sD;6u*P3pHR#yJ=m zY15vVujmYR{RHO;wo|n`d!>8@hx>Cd+AoTGrD8?b$PmFaDHbX&fD!>XNF+-YG)uY{ zD);z6^AnsWcyyLw&DRpV0GgxC>fkTAa z?^3sP&!hz=dQ3ocjhZ$!scCphvB6-34La<^9L`e{eDOvMMzmnFE%rjwi0MDDy$pK; zo8l3JJ&J>omf;yAKVxMW{eWq~bEpw`vVhO1t&EVT&uG0np_uh;!RrDebVBhIF}6a1 zI_)x!+Fps`5<47In7D%se-&iV37OGsiZx9A_iYAFsG6arQ~8O>)U%lC99bDOD4gkZ zq}kNS@F`=N&UlOLArplOgK5w;O`mU*fWr(9EvDWsX%w3Vi%nWMVT8OQgQ+5SG|I3~ z#i!bY5ux?27vijdy;+85*c+Y~{s=qo-hHuh?~`)?jPfMIu4Pc{o1?7YX?~CueDpHI zcjpy@)H?Esq=+YH488=;J~37VJZ)Zn1s>($!| zLk$}3qzP;{c2OKw~ylJqYDB)0#<5-DKQ3FrLGq)rH z@{TA1Ke+R>`V7wCnp%_OZnFv`;pUtQc2q5Yzo3?P%lRFo6}OE7(Bl;#cQvU;n8gCOOW2XrK8T|aF0&)k(XG$`di8dz z^M%@Ib=7WF0e-m0h}!O%X<3@!S>ecZurRW{9Q>2Zz_TSAVBZ3H142Tm0{YJ3E_fI%Cg^?0pGH7h3)d3YOggxywfF7`rzxYGlFR$ zjLBVu$7Aj{$qh$tDhEx%Za=!3-3Gcv=rWmlr3c-aCSe0K~MC=kvQT&#R0V zP=wn@^9XqV8{pA9GzFx#1mt`z&43b+z_*_$s?<_}PWPLH^QS!e=S)t*9ih|eLa#d; zY%*>_s@w&KTK%R1OuSit(kH5ym0ln8d;l$Kvs109ZRt>vfYmDXHi;+%^9^x+1L^hK ziUeLIIdS(Qu_e@;B<$}l4Ey{=_~6Bu+c-pq>uX$bXOnyJ^vhp!Nfsrl-o2DX$<5$l zzag~`J2kc6Yl0cS9S4DjD}n%2g`~~UHTYqo6GkIU9kOEN$5K~qG&>Kg&3Jqoyb^V>XmOA$qW zs26wm*=|`amvZyZ)C|VC5zLBS;EQn3t$IG1B#%FzT;uTv;_M^C^vNsFEdE=x;v;O6 zL-b8|I7}LY(06nf&X#s`6HW#{c-<3^Sl%s>C!X_{t~PmWfm_Hx(@)~#e=RR9Dd$CQ z!-jZpFfwui4pPSAEDZ;nm0KKlXj+I{e_d$PEKFltV*S9$0JXgHGyTzFf2dM#ra@_nmjoarivWC10Wi?Z=F>l>WMCsq}U-S3V zxH5kg6wY4-8ISU%LgLY)>50W|7=UBL`SYPV2Iga-jeGYre}q||e#n(iaX?<8K06<> z#Ds9}EZrtpufhR&I)u}nv3Gl0T$lkI7+~iX`6Ay3d(XS*u5H6&*0lg_n2twe$Yg-< z{``A!Uam1cubi#xJCHAk`NRXpz|<3xK~v2PHa7o1z2!8pL`9mM$x57OW}^6Y0r-*K zEQqCYnpl}V8=h&9iNc%NdI|i~)H3mk$@r1%5Yw<^V_mkz#Yx&=L4}I8l zx#^g=52^3Kdg8Lx%AG&)^YLHfa1gB|`Hqw4^0%|~3#%}WzBka2DA*v`2Mc-&vV{ET zfK}MiAt34V{T63vfkvv5&6VR!o6snZMmWvbRC=FV2bBB6H|sn(g|uK}-mrNtbv`X* z;OEyI`OCDo2U|z5v0if>w7v;JT%C81qtFwwignNP<&C%fq4hQ`I0OZ5y=8hTw09MzXasU7T literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_0x2015bbef96c8d3d0f1c59f9265af3cf2.json b/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_0x2015bbef96c8d3d0f1c59f9265af3cf2.json new file mode 100644 index 00000000..f8350f5e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_0x2015bbef96c8d3d0f1c59f9265af3cf2.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "085" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3aeec5210184389ec32528d4a9915a34e4355907 GIT binary patch literal 590 zcmV-U02DWFHtUCP(TT@0(0l{ zE1=GseKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;`{jG>!q$92VsU*h)Cf{v9i39@*2v& zud}~6j=CZ?v96@$+=K6LvzbMSK+;msImASNS5ycqO})!oC6S?TWa1kge4}H1V?*EA z#5X?p#>e_5hQ5i3Z*uTW{_We>=*UiZsvOTbtdWgLfqqOlBy(g3ZlX{*t(uyM!?O>G zrs2s*^J#c8(tH{oMc$b} zNgrEd>TeZ^cU^Kgy}z>brt13jN3X5Xl^nTXH(BSf637J$wJ#Ch{kl6%#|m`Grxaiu z6KPvhN|0Kz?e^uqW4nDGe0tw*&w8D9`^8_-8u`l#DY(4$3FJ&+bOkaPIUl|TNue#t)iGe*;sl(;EPNlY1W3G0~`;{lPmzH$KX{P(=} zYkrzn^&(<8A-P`n1;L6Ssc4eLG}o&rqC{ZfM<==d4?&3zLlj~&26w(-QErvLj@V;hx0Rr(A7m&(&J>m(eAH^i(LU{nv z7)bgOY?qrm?FXGkqXFrgUcnV41>ie*rdP-@@c|HL7W1_-V?k2z10a;hOgLX)83kFA z7J1)08?MfMtY$IggG9B9%O!uhL}QzA2l0>MP}tD!3!^$UQIZoW+BRrvjh;l zm;_VsB+$kbOpq5DVLmW^p$V*)S(2C)!f9&PedKYm;K(VE-|njch7GmUY&CXwU>isX ziN^aa*Ol^Y8Fxw7Y*DIC+@Ub8P0Gvr8S`y|<5TA2lBLnl`o?JViRpTp5`SWLH7v*A z91;1CFPAS}3P|XjJzMPluFA|i0#0r@hEt~2wXaqkc{chm zEWpx%zcg^{Kqz?PaOoO8jI540WyXf5N7g0?5iqIgJcL=UC9E$8RT!;~Kx{b`0CxY? zY29Q}FTN3wzJLGw$Ir~{`;8`oQ;R9-DmkdQ1+gdTlpnPke3JBG<+-ZVW`dVrhldr; zBvBOz+QXEYcg&@%bi3}esVS{F@wVo{+Zy9-T@-J7PQ2}T@V3Wz+ZV;#nGilvxNpv@DrEsVekd^Ok!oYB1EG8#X9<(zzMW33HtoTMADP2O7aSc{ zUY&ma>U0czL{9L~wN{%J)Mj_fd3(sX+U(XGm}^2h0Bsb}fsoy|LN?D2**ZUDYo3s; z^Fy}J580k4Wc&P(o%2I>{zpi|kNMbOJbWNF7*`hs{ejr<-XZ5_!+VFEpAGK}d4_?Y zpx<$fS$X<}HE!nxit3cwnFNB}A5 zDpjrQaYo>f1sPO&1eM%)0D^mY1Si*DUqIH^jd>l!8YpWV*8|yTG{0L5W8QUcVT z94S16K*8;}ZMT(Yp5CB6#sxv-*e9tKQg8ItLg?Gun#{X-H43AM=xe3q9{1~|r{xU} z>!m`+$oxQGF?OJ_q8A5{lwLzUu0~gf-=JBbw9Nz4ES%a@4=fnEW@Ev)#4#>SM?F2ppXetjkwl;CPn zwbBWw+_mDSgRtmH)4l_H1q~@&yo_1qB~&S+uHWb-xQ`{M=jD&T`TI}v{H2!>vq>7P ztM-Zoa@ojxr`2d~dmagQcl-xIJ7|PWe|tCFZS8F1ub=ehJI<_sb}WK literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_report/report.rst new file mode 100644 index 00000000..5a30ed92 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_085/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a044 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 085 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 085 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.01371 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_085/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_085/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_085/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c6952c1039f0b3ac7b05e2a8b8d117f359ea33c8 GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8d;K^IChe0CuuSnj?&grDgq=xkup^!rbUXzm|rG9TaKi`fWVT3gs)%$ic;cE z`?E9n7xZ7BA63J(cR>ofl&r+55{*4PyLk3}5$5_DMjQ@3&-H^ix+h(XbP*1%ApSmH|9ku@UW-=LG4iqLI&uBc!pz<6 z)K46(UUeM?rey|a+^Mg59!!p-mA%l>1LEZSI9m2YCopXkj~1d^k6~a$qrI)48gX>M zk6at^#}*m@yFTw|zK2!ULyqd19i^93dMuq8|DaarDj;Nmh2- zEv4HA7I(~{=Ka)2;1E`*E}cqc+OI>d7ow`nncJi}_qGM|#?_ z(yBC}=eJ(a&*nrygn>L~`X<)60ff3=@6}{wPm-Ug?Vi%VH+hs(={82Nm$lzUh#@h9laH=QAmNrIO57rL?=Z7S37ng7riiWt)jw&xZFn9S>JF_$gYWCJMr6E0r6i%0A z_KOAnn;eZ&&sI=-(D{$-dWUi;|Ww+qMKWUSNU&+Zz zPp);ZBxUh+E^aquHK|KE-v7_i!h(-?a%IEZ$>q1jLfLW>P%PV{om{T$nLCBtwkVdd zoAhs%jSJ8>rbFAgd|79(>nAu*uswBK+AieFINX_m;f|QwE{J7aBO!v*q$!kL00jbY zkXRPVXp&49%3pAS<|jB$@bEmvny)kXnA&L6#u{l9pBETBVz5n(0*g)#CJa7zDK63e zbJL?ZMFxcoVasPQ3#n@+;yL7kMrRuRbAiFsW*!U7WXcQmQ|x2IXrP%A+6b~8fQ5+1l6i*oY32Vdn2TU8DLrLKA96qO986!`h(0+GJF}t?8RSS&K z3B{*~;R+49XqQ>2?G-34u;G}-*zKqIn;?Zw$V9U#)-YYaZ!>UA-3%<9+K)}9pT*SY z&`O~};Y6pACZ|S<&lqMpvsz>im@JGLOp~r@`fQs79Hww!G5vNyqu4Z9Y|_RFW8{ep zrjFdc`kL8UZtVdTF>L?lS>9Z0u5_~Q*{is zN=&GRVcx4iDh@Pab&o z;nA0W8Q?FI4)QRCjtnT2gtJNnrPKmi@@}_QgJ@szu0P}xt-~wGw@n9>83y%?99}F6 zC0!8m>chd7rWSOqq-yzxf?C`v=1WKuHw|GEvH;?)Ds_pnnA3KNI+9wuarE(3b!0la z6&fI~-fgzOR_o1<+Nmg@54Rap+dVfeOXEE&9GVX1hqjl6|Kvn45?~yk;Q-lL7z#AY zLLkRJoGwzXDZLKO+i%K{p!ZoBx7(=5aM>1#;DVp2%6@MGddtoVo5h*bUTJ`NyF;?{ z@ps>)0@FemlLHBdN0~n+#~it#>^6wH{p9uPHqb31Zx@NsniE;SyL?e<-RE!+fSi`| zTz(6#^D?svXu|2E@f>vjTd<<{XbDIy3B>uzv;qns0^fb6s8Uk}Io)dz%|F%AA22lu zXM}dM1GDa}vBkI!rE(t@)a*4BP~wf+vmSB1sC0Ya=VKUA8|_L}ZAp8I1gci4wMa%G znQ!H0Cy;KhrAV-v_~>wyS=&Q~>uVXYw4OP9arB2wQbmcY z_pek@ax!?_t4poDc2(_l8$jbvqag5bndd>Okg^%L1~*82LNszf#c=_AK64msg*BP-;C+B4u7@5Uysvk)BlWST9F7@iVrjO<>!6gDXZKnXgCYW|jA6z~-cwIT5-XnL6{8Z|w^+x+~r4f(LqK~SN zdvdxL5nQQO;T#7w_gV5rz|(@!&Xp5katkjuD-zuQA0?HBJ=e8(TQe=@ICmE!PLJ!; z!|KZPR;_;xx2OvD-A`OF-t^9b5j>T`Xl3N$z|qJuu6ac;S{kiHD;^X(ID>6RXqZko z$riayj=W3B<+y<^mbl4QQ7sm-v!7El7-ffWRdj(9;X$|T`DmQH0s8z6-T*m<5_j zGgKXq*I;z*g2YB<6^LcOeZ`ZN@KdY?8a~N3>k65j&E-`zMoxga0FPHWaw)ZdE@uYT z*8w7LXZ0{xUB483h7Jx^T?eCJ6@m^m(;>f>i}C8w5vMRygd6e|Zo*ec`3i5!SG*x# z@g{u5l&|=vdw!ET4su7}=wS8RS6_VlDkXkVoZ#Uov3ih@dT_LnxjIB#Jvds=z+4hC z1Jo`eW+3Fzm5}-CLkic26mAkyxIUzKeMs>pA;s%M7OoFj_&-9D`nXv&5D&jlH4s;C zO8OV7hMyhs=GE}CL*Bd^elp}-1qSX{yoUdNqvdB)A_`CQc+t!1_;K4>_ zT3LIVh0#W41p6iOr>*&FdQ$?4@h?fh^GzpMTdledf=w25%FH9ko!r(Y`KmReLr%_b z@cE3G^W=?3a?Cd{sJW6@;6dyyyJ3*1p6Ju-J{x*SCx^)D8E8UNSA5M3kRd}a{gSsV x&%U>{q7PIxASU?YQ=$s$^Hz})IUxp-bq8c8JY+OSM?`dS{{!9K>aw{U005Sacn<&o literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_0x00af9c0f332e31cd809361e68391cfc0.json b/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_0x00af9c0f332e31cd809361e68391cfc0.json new file mode 100644 index 00000000..46415b55 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_0x00af9c0f332e31cd809361e68391cfc0.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "087" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..06777e7df38f726947f74eaac98a264a6c128ab0 GIT binary patch literal 590 zcmV-U0TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iHt-%kwB^SM4*uABV;&? zjE0es2{IZ+#>2?i1Q`z_lVN1?A4okPX49ZMoM;+!t7D~4G!4&2noq;Ck>=CzB=X(_ zO8V3qQ-7;SeCU$H>BE(!H&xfKKYDGAuH?uCyUDtMl|U|7sC|j}?$`ZkI#!@dKBWNT zm`K~2Qi9ZyZMU!Y9oy~8;L~}#J?nMa?H7MRYveC0q~P+}Cy+CdQHDsyFhdn4NccM4 cryS2Qft6o~APCRn#BUq#7F|`LGx!Jq08vsKssI20 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f1bbcc84362b649ae217b3c9f3f56fbe2ce20c4e GIT binary patch literal 1540 zcmV+f2K)IRiwFo)%z9-4|6guzWMwXJYixQhbZu||tykS{+cp$#)~5Mu()0)IFziBb zFJf=0EL&chY$%2TL5gBqcF|r8OAUgSD2uT~swCwkEdp#e#R~9l+Qs%JdxSm3US)@r zY$qwQrgeoN63N5!edq8aefZ0jKmNUb$v*mXMzf=gxEakzLK$%h>zfzjA(4f?vJ3Cx z_oDG@aa`2(EMhn%gwSoYQR}U`xbXD;eDW0HdYR}7(@v_KnWR=1V}#F z-TAT5OSz(nJkxodGDSp$19H|HTq4C$L=)gO8{tI4d)f2?1rjJOAe5D6%u~|bPe{at z>H$e(An8l6oo{XUn;p;dAbis+xPqX7e5c6u0y!iB5aP^oUale*Bm+M{LW$hK1p>=B z%+sul``&4|Cc`3=h-ZYM(E`DuEX6Phr9{OXlDPm$BvRotEA;Js-h+r3l`#pC8Q?jf z&3pxu283jYvMg6}67Ool1Dqi1Fo;Po7*o5MVwELaCA5cnI2aHHSeGC5`>--ulEZ4i z$M--81MjpPgj#n5@cf%CdiANumBW4(*o7YJWb6C;ViT3KJqwQYUCKiZ}-&@!-kq`wY{wk z*ai|H(RjZVx>lVn<1Xo%ElSmqdmxN!6Y~5{&H@|Y_>{R?sWkps-x!TPF1WIZ-4`G&T1slj=9Y*UT66;P4 zh~0m6+%%Ci%WnjtAKd@p@iQ~~zSlxZ8$sPm(>XJy*5H8Sv_B zZ?DFgB&r6WeN35oCtS)}x9dJTF{M2v-}W?o+he}%i}LlSA{5`nLV!y zj`nJ=j=y+yJSIL8CwS;ut2Ik%t-J2LJ!D+1bsG-MHINQa8zDLX*?kMLbv|VKe8~1R zknQs!{qrIHX(0XcAv@DBN~$Wsc0 z3i=(#m@QAgw8pLNvqzRWsjR=zV~(x0=W1=;DV4Qj3YB#yhVzn$vUOTb7bRegKPG_; z>MB*QZF5H8kcBd+@(5M3xA_1Hn-QHte{+GdzG=*xP^>{^jgw|5J+Jk^?=+zVMMw## z_T;F-LkKFk4cB+uMc&h^w9mL8h#UqavxU?feXT6??QKmK-J%{xaZL1bRdSE}_1x3y z28Z=rS;xp?S6?x9P-Dd}b|EOeg!){Kt`5IJvt((TyQWz>wW01^B-HcnhfP%F5N?SG zlGr?Z&0K(DT9_Kv0?Q*7z4Ll@q9Pm&%(C!lExt`wr|CbU@+aWz6zkN|iFz^&340_puc9d&T2#|M}BAf9ZL| zY>Fw~5~h!cA|>-)NDIO@FHuL;;laE7l(Fa8;Vk62>uo qUBqEb;C~eNUl#;oV1$HVHo8hdT(efU#dm+_J@-E;?Wv^d4*&p3_Td!( literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_report/report.rst new file mode 100644 index 00000000..3a87cbdb --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_087/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a092 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 087 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 087 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012249 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_087/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_087/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_087/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f7b02ebe68232b0744f42c68c4f4bfdf410fb7a8 GIT binary patch literal 2846 zcmV+(3*q!1iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8d;K^IChe0CTTJmj?&grDgq!#kup^!rbUS6m>)6$+Hxcf1_YKQBzy%6kdzX4 z+Mk)hzoLISeTKeLAEGbNyC8*KN><`jiN+qD-MxG7*^7(CS>UgW|M>T33&~&fxnp`~ z9^yvs#=^z|hLHzf4{crKBcr98{N65#f>%_H33p01O zQ$KOEdewCpn3frwabsWeJeV9uD|?}%2gJ$W<7n9roxrqFJY0xwJ%)iHjrO)aHsa`z zAG$W;Pb}02c0JzFd=IOxhaA;2J!F{JkZTk;dB(TJnle9v@v$mbC9C`+Mgo)Z*A0XJ-FBnhQKU{2aNvhXcP-bCqj#RvWo5VB zQaWv5amO4uu8)k+gM8mRsMge`)at7H9cizA5JyWeYNITyp3IW#-$-$^m=gqn^t5HA zRcS)cZ@r+G74l@cLXIadhhl9SU|F-IbxU(p8?Q za(nk_9DT;a<>f<+e7;x`9u`adDLV5_XTW2UpyfTe@dErnqQS`Lr`hRaD@h{!j!j~A z=b+iH*7xdCM+SnAOnb-dg=Aq>Nq(xd_tjaRfk(11SfEs`D{V;l-NY~P=4g%^M{n=H zsK(KI^CbmD8tvM2(JQp`Lz1_POE?QfL)>Ram6!W4cX_OxS(*bid+V9fs6U1jPM2l& ziUt1LAe-m%qydxVm$D)?tEzM$?W+5A;B+e|Zi+>+SdzbXr>?w=qm3*1+-}HfQkQak@SmlH1t0GSWy9PNa@+Yr*>Vz4EZf5!K`49XPC?kt=gZhl z`ZvqQ1?U;mp=}{o)*0;j3CkK}jHX60Dh8o4^1qKfpY*VAaqLYIOgU?-xOSJ#o z^e9e|K_Nrf@)^uR>Y9mo4!NMwnMUtiWH7av$09SC@E7-55k9hv=EX~J5(0fP~3*zAZsH#A`8 z_iQi4UeBg@z+jK!V4$UV!q`t(8^%9i+VC7o0*~hKIpxY2dHRI*yCaI(wau+sWQV;Up3m*Q`O6gnXj&8Aqxbp5`~z!7!Rw{&VhGMRoBQ=bDX zg$9Kaokp6BjTE0T%yee8$nG;)7%`Y8UDNd0HVHUPVc%lh4HF0RJ#2tb@6TJ14hN0r+Ux|_wAf*2&T)h`)<$U7o=Jn< zZl@!)6h<1}os8Z{B9DRDpz(=5Ajc}@t!B&yf z=b(BLZL?Ss1keZfUQ}MfGq|c&>+*i10wUq|ObTQ{zTKq?U|$Bg`1#QxJpai9&ptZ- z>d$@rRnkEorqGcAg_3YqiJ+{vfR?=5ktB%rHShWZKG8b7f_&R_K$&4s&&c8PMX{ud zVorV7-_q2Au9Z|R_fS-eTg6-nY57e<+=MKExU1GXL|M#fyF?w;Tf1@e$yIe^I=U4a zAg|tSw!cwp&3$#hqJTc!W=w7O+_Wr>_pESWI+!2WUKak76Twh~aeRgYWM^S0&@2mq z9Q$y(NLf<4`!sLADMNzZXJy=Oqawp)TO@)Dex@q>y$R?oJ1cG$XHt8m0p{&}lBG|+ z|2`F%7Q&buNH{#q{2@8!$PHz;LDcQ1uUEH$ZV`FANQBm$$olB=MUgts;UEAxE$6u0 z7CCz`tAHk)J{r$K_rC=zdXJVsy;TQszA~+V0*JtOpDAj+se+vDHi+h*>gW%cnuIe# zySWdu?ya%KxDKUq9~RW?HWX0e4e42zxL#B`UGVb>jHr!vrK+~-drBQtts=EZMj@GR z39}POr`uBMu&Sgc?q3$RM4FR=eQ+u4;ZgYLXqZ{sLx$^XnS5zIbM)f)_nD-M5?AkE zsiNd$@VHy6xAxjqwcBX`jXw^9z{6#p2dP5JrtcbDKk*6C$N`Zf^$u>ApH|`UKu#Kq z#4+4bgnYH4RMcs=bLpPtrq>k@H6QV?T?d|a%A*N6O54cMP zk=x|RyA(m-`g*>^O}2_^v5=kpjLl$}9l%x5MJ^8yx@FHtqvQ?H7jN(e2=eSB!}Q6k zo=N;ewB#dflZWWrZoi)l2BGihE<9UW(QSA#_`#38;>ne^1lWz1FJ5=G!d|pwI$jvy z~H63E(dMAmE(O02Na+w{N1)54T zR2`4jV07(*#71Tnh-JTf#gmorQ>+FWKFv033Ync1aw-}jC%{~QN2?sUlv+TSGXv}E z0Fk$|dK9d#UkW}$hli`KgHf;wK?j=YkYCHic=h<0QU;VY(m#W&@fzaiiJ zP59M<6t52{-Xx@WeaQUvA@es0nZG_{;rft;|05)+kDFBk@$d^(19A1H zq<^7m_}L+EUJXAxkXqm%L?p w_PwnYeW0oVF~Jv~5>-&2w~Abz6JrorcR+T+Lq>CSL_`<&KNZZ-9Jw3-0RPCB_5c6? literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_088/afni_proc/_0x6239e773ba053e07c01ae230d943aed1.json b/Afni_proc_through_nipype/_subject_id_088/afni_proc/_0x6239e773ba053e07c01ae230d943aed1.json new file mode 100644 index 00000000..4f8e0fe9 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_088/afni_proc/_0x6239e773ba053e07c01ae230d943aed1.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "088" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_088/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_088/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..40115df3a22c174e61ea9e2dd832fc5efc9d2d1d GIT binary patch literal 306 zcmV-20nPp&iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{y`VTn^#Z5UPMB+nQE5&BT4rn3qC-O@pXJ6AHsIc(mi%g!#DHI@0+jV@883NZEa#6 z&f88ko@+&%w=w)MXp!wy-e@VQVkNTRI^i8*+?L37%M~=fM2vbmNX7jO^~I&p)(>N2 zbpy_A)wKPHvc9|c++ok)KBcN@!<&$B13AS-4uoFsb;&-g=2 zz$*bg)i1H4);OXKC}Ow)!4RL|!zobJAj;bAgRTmH@!6_~lYzP!7>!Lh6U0Lj%uM)v^# E04iUU<^TWy literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_088/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_088/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0e69d7b6129873e29e871839de2998df6e73c320 GIT binary patch literal 1291 zcmV+m1@!tKiwFpU%z9-4|6guzWMwXJYixQhbZu||rB>Z<95oOpG-fPgV2#{E%(Tm$1rgG?<3CNVTF@g*S41a@Xx4Ogr@gRyK z^gQfpWvRvewSh0)Hk?C(fRwB-?gNHi3v2SHd}26Ks~hNWd*)P8^bZ*v_%X2W6=7o0;&Qy#ZNp2XVBnVWA*4Ccjr3pYmxGYL*mj3Pw zl~6${g$aXXvVe9kr?wEv3LcY~CKHfo>&DaZ7&B9d60?CHFAxw#+>bQmY6>K9Wf49O zD~3L7PLxtY0>)5%K@eMwrZM@@;wGayCFtmcq|{P_9}D>dT#W?;J^@V$0u(e}NcXE) zhIA4P9tu%XOvD@S?i;HLq9jH}8%wHlOJrB18gwa_(tD)|SrgQ9L|;(LR-Ae?zgo(P zR5MAYpiM~mGQKm-G406mDM%`l6{_7WsKydPb|RZX(3XL?Unn7n5g}t~scA(cx7I_# zoKLeDJwGQi%F)C3yHQ|K$lTI+t)+B3xsp62qA8qBgb)izSKt|>O$eBVA4`x4GJdU# ztT$zzhYZo8sPaD7xKVTD63JiH)s$jEZFYOn$q>uHph>c*H}4Lbj+G^m*8NSwONpb}MUS#8~9uUnyiQ%-vz45WGwuw=|ei zSQBFVxMj-t3~Bke6=)T4__e!4tp*PJ?R1V{5z z&82oQ{KGXZzpif=m>7F_@THP)aI}MQY_5Cv%{AJ<%4TP|X@TZs`07=!U9q`odAlok zynA^a?E!12xzuu~5-TO%!!U z{Q)YzM~Kx(b~7h9AxPk1yWj5lGIslXER_ZV=Lr-QkKVakb)Tz7l<}|qAdNU? z*Kzv4W@Lvn(ZoqfFr1y0DZ7mgMTa`BY?=$1;8htW(mS^kWJZ-5%kR`}W7E-91H#4r zO1r5W3i^KMiXHU+Rvo%V3A&!S@BWu7p(C4yO4YPA?W!%a?5#I$x1J@0>ahuZ\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_088/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_088/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..457fa1ad74c4c4e88afc0f74dc63f1ca5f03a3eb GIT binary patch literal 2544 zcmVb!>EBVP79$FlbE<9K9;5t3PTv2r5gu{Z^z8YPg%MiC4NjioQ+q~E03UK%xAl7Pn|41l*fUG zva z=u{E>aFPh+el)-N*RAY_|9<(8bRGMS$=peQqZE~Lp`;W_6|?xDR<72Hilmf^#jUN3 zsZB@(Bbl35jK`|3XX#aWKztceIffJ(s$poIw$-Y)>rJ(nrQf)Lja)hL$*lHJj=fNp zw0*U}+Hy&$Y?tomFzfp(OoYtZZA0z}V78QQmMmaalnMJDMOX1m@3$;V+lC=|;| z89GW5i3ml~5T?4>?5l=(pc#*?PT%bI%`Cn062B;VS$f?7VZCoYwv5jHlPvvAhLx2Q ziX*wYU3^g8mS5xJi1;I!vIMOk82U4?1BnKuNS_6Slq4~q<{75V$PP?pN90fUX_ zhN-q1mU^V_TU`x&x>8cMlqw6B<*(Dz%;#Bp|3dyGFNtAW6^<5jp(Gwlx>oNTC|P=o zuS^d>r>F9z*=ROemR@f+p;lnm^bM(R9u#(9;U9Nc;1_bT(KpoIg`}*$$;4INu=2Vz zvZMd3t*k_JuUK=)Ua_=WuGCyV2i2N4-YXVsA=#@Gcgy7(4RZNb%{c`FXWq42EY)lQ z2T_ho41064+q;!gjV5~wFxo2@cPr(Zjo1|NG;b=k06>KS8t0mo8lL6DmD*QQjG`Qu z7#^K0F^X&fzv4QG>$qdY@kvF%V*z_yDR%kbcqZVJfa7g0KOrHOhlDqT z>T#dv4kT5W8Uz@9`8)oNEkox!X*v|9>*gAhaATv zw8S$(e&9V!m$|JnWz;(={3hwEcgly9&{iC>V*}K zE8=uQV-gIO`1^PX{Y03};}}sMf8+^p!p#g_o9j=AAQv&WIdYfK;c#a2nPyXGiH`-( zY$00g4TUUB1k96;kiGa!0#252=n8VLf;c9QhzW1J7L>xWfVrVyG+N?_t54BHP~q|* zOz5&f!`TwgXgEA={0Y9iyAO)Buf8}1z$jlYao{=}M`W~YgeZ!ajR?P5Vmb|%IQBSp z!q=mMLuhp1k~uL3T~oCVf%W9vW_7z*1b%Si zS^YVj!40dS8C|^&B;o3U3KW38UFQs-YXDvR{N)Qc|Ji}(z5MR$KMd*Dxquy}AlL+k zlKX5iLaDXEEn~l@sxaF(auAK=oa@LYjy&Q6GoyBdu`ida%C@a2CF{X(2U!&xZCj}H zK(VSj)zUUb$?{n8w&EKv#@h7XuypXda}Yn*A=%+plVn zpj#r1+t=#`EZZt0T<|kz*&ob+Z+Qh}tGb}t8#<_Wx-3h#fB0cZFkMV3yNgJ4y!pHQ zhGXdFzRuX~r*CGrvF$Q?yUK{x8Itwu^NXVP4&fpIIjxnX(hjWix)234;r5{)0`I>B z5q-c*Kx=D2&Nt>2PyrJ7{!`P^S{BghzRo!RoJW5s)Fj*yI;}2@x^Y)5#(PjIHzA-_ zUpIk?>*~`!Grel|`e5fa^jLbQ-mu!*fvEwjHPtrDC?xYzad89b_1mTfQROvp^E|O- z)SMOU@6S#9;$`yi<#_Y%0d|52ZI-w1ZN7Z=-ETMZD#}gWx==;=&EQeLskIL}4XfYN z!HqA+aU9Z`ECW?xWit#MX_(uD+1TAsV)YJY*Pk@t^1yBytIRNLDdv2mZq}{2*gv;t zrTMzjF^aGZpX)e8uVp-Aw`e+-*5nDwJ$zd?ua3Euxnz#vMgZAus{8#${V7y{oj6GP z9=yvp#?jv|t*rdaM}(DH?OgROJe}9!FV^|X`Siy0zoCa)62CC#q_&Oh@tGw!=Kx){ zmw>)uGV~T1EFWCFE?iJ=upMJO(YjVs?>wsO+4wm9r17Y4EWbqz*BcGE$3e|~p1%l$ zC?4-!xDn=Cc(qm6VE=!TR~ik2z?D5jT;V!*9cG+g*XNhjjrmq>ehXXFf_?XY7EC7L zaXf}oDM>fR0gZjc!g$LQ!FX-Fk#2-g>|hK&JBm*HWLBt3TM~OqDHf%nUEY>vJ5{S% zDJ*`bBpw$=uqw79mEoXU4@!{B=zkqLIVb&I{;$$SdWhmdKx G6#xJZSOypX literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_0x31b145bec7847e96e89836fbdbbd870e.json b/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_0x31b145bec7847e96e89836fbdbbd870e.json new file mode 100644 index 00000000..4bdb7bf5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_0x31b145bec7847e96e89836fbdbbd870e.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "088" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..484704b140ed81e7b5016a3f5a76f1f7031efd8a GIT binary patch literal 590 zcmV-U0TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iHt-%kwB^SM4*uABV;&? zjE0es2{IZ+#>2?i1Q`z_lVN1?A4okPX49ZMoM;+!t7D~4G!4&2noq;Ck>=CzB=X(_ zO8V3qQ-7;SeCU$H>BE(!H&xfKKYDGAuH?uCyUDtMl|U|7sC|j}?$`ZkI#!@dKBWNT zm`K~2Qi9ZyZMU!Y9oy~8;QYMZp7lEI_KUxuHS(7gQgC_g6Udp!C_^M;n4t<2Bz&Fj cQ;z4Dz{)Q~5QLxN#BUq#7EL8_qWA~^03xLw@&Et; literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ee9116537041e5f24755889e896c4cec1970d5e2 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyfEL+%^!7o49`E;XIHOMGwN} z;N8~IK4UvAf+B#CAZY6zl0#8vK~U0YMXy9EB(=5^7-%m+1L#)u(Eg+TivE=jDebQ9 zz>U+5U|1qKobQ|ANAB>KOMm=x?Sg&sFE~pNQ*cw3Ld-b0zz62VMF6VEFYVyF_`PWS zS{xPie4cQcK#^bdB~T4SX_jO$EAnL$F_2XH(P5E)_9*0xq*C}qM^a>ih?FQrevz=C z$ZwvU?$Xx%Zjmo~Q~?Q?Eb=+G$UpT3581%tF2rJhw93ZSeIbWoEcQtZBZ!gY)1AjZ z7Wqo1S*%WVUSnK?45<&NtSUZeoN77|0b+Kfa3&Ak{xA+?7j zje%mX&~~xC(cS8`S}hFU^h%*IC?wx2vU~{+z(+!YTh3Rih$W=x2T5p|88}~36$M$6 zmT})b3D@LQrizFZI2kVxF3L)TlSl$O5}3>-Od=>vleEZh?FkPf;!H&l5Hlb$M4P*h zlZF5(VLZ*Wn#Q{t3!lcsI`kv(hZAZy5~|Z!=$LuLqy7*$VqJVR7~smJafYjbAKxP( zioEYgNW=(;QOzWM42}VPURh+EgAYnkc}S33$)hZzPDUV=S@LOq_a(z+$GtEDPPunr%y=3`vA~-V(QEi+Bq~OI6 z9HXaDHYQ;bUS`03RQy~URj;xnF)KvV)UNy3<9w-+BNV^gS0joWYN6d}J=nl)pb(Nw z_FIwHs)iHX_}#HbF>GNp0sL&T_3_eKo4%Xnjm#-Kin5d#{h0 zCX#0PO;Gg1dp|sRZf4(WwF#bDTq{?rQOzxdJq@S&Xf*H>(ucJdy4E-aUVZKE)&y6e zYX~}^jGK2Xl&ban?(<_)Iy3U^%)+-b;oCVc-|mcjyR-1^PWX1u%eOZp-`*^IdlSCB z|K>ZMV@68C+sN^;Ij`!B2XOFEQa*rsYrTh1zKFAgt4ZHRuhBT}!Nnh$-BuqR?bco& zefj!mLVPSv^w76fYnIenf8BX^$hcbTHyoU6ARVMOMsyIe{|;pPY{<^pkeyi|J7+_7 z&xY*I0@*zqvUfIQ?|(oVeaxl?5rs_4~Cpw4Id0SyBgjLc|w6$LBHo1 zv*qbm*0{ZW`p7aTmGw7%%(1ohLa(hmrLrEILS@~F@Vo?Bwoa<)yacTA$0U$qU8U=_ zZNUK#SuBGpk60zQwzjaa8Ph59Z_ZKHH;s7{i#4pQY1|A{tJU7@_L^9N5~3wmdum+a z5rP%mhTC;JMdszJY`}#C0tY^%wvc+8UoH!Mds|aQzodQn8fDk zYvvLb)6&$i7FZo}ALny(8+)5Cn=vIaiKXXGzJvw0w8b|zR*#k1WigGRUpobcDY#r_ zt#X1@?n-&nAyf{OY2U`ZLiQP6yo_1qB}{8mUBAs2@IIE1fmb~F_U}K<^H;t|xDC>9 zUA9*&ESF7r?{wQ%mrcBlH5#3$`{}=7MeQ@eWs|*(_lcu{T8& nM1cRpXz->0jDZ6LXg0n|VO;Z8x5anE%ya(*JI<_3BKx+ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_report/report.rst new file mode 100644 index 00000000..d79ff186 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_088/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a053 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 088 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 088 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012223 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_088/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_088/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_088/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8e07bd7bf3627bcca75716848cdda28cda3f0d19 GIT binary patch literal 2845 zcmV+&3*z)2iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grDgq=3krGuUrbUWI%`X$6El1K|KwwEi!dI{WMJaKo z{h1m33;M6m(D&$5^i_Hnq_9iLN}MXu*u%5CckexWaj`fH{C)AC|Ne9#`HMbtOz+G? zoaqF}A80zlTwlY8!=dN7eh^3ZrHhd+!l4z!Kg4VQh+oC4(Xu*5J~mw^u0L9sxx174 ziKCUPuEW5z%;1bW^)=6f$#Jy27dm=Cocs_+OMd7Crj6p!LUijf42)>BxAjvajt=;d zYa{;HLIYse=N--Wu=kC7gzrlICG zH+kJhT7XmxF+>uR&s>ZzS>ZBN>dquVfQqb#hR%#x+AYjL!g&*gHYr!6b3 zN)vj1>jnL6t{@a(AkUe;i8XEjp&rzGHCfq{A?#a+u=_yZC zxxM=|jy~n#^70`@K3^>5wu&YG1fBV&GvqNz(9)jVcmaMO(O~5B)9ehel_U{4qq{ooL>9Wjz zQRKe~vIVX{8ZcRYDJ!*RRjuvUcGZpqoNncX4WURDOY+z5O3KSPTECJ%&JF{(x3c@Q zSXvm2xQ0||?+J1AKD{zs0PSv#UYg~4wW&5Ltvb{S+&Vp(>nVHLO}Ow++GOEZaQavP|9g93!N)tfvSIGz^4kTmY&i)imhI6_E?4%<9Wl3ED3r0A z^ly}n3(z;FL)*E0S!b~8Cpb^AJ#|~!7V~8s?##e&r;ytg3uRp+A%fGSDU@9RA^|u^ zEX6XKB-4fR7hItE3CkK}oHX60DMjFNEB7;W^wy9BI(aFJt!RIc;CE9;( zdK9O~ppYSK`3zH2+}fn(}sVCmF;Y%={Urap&O z3JnS;I*l|rHBx-WFw>dUB74AOVa#BfbWPJ|+a%yHg#(M}w?&O&(_pbl8z+pBS70!8 zO^Y3d<{U?8V{MFP?U^*# z?RC4gmcmGbdMkO9-tMaK^ari-;F5F&LGsRXsjKuV4Yk&K9!H;CGVl>-SRT^&%iMClR<#M18?!TzKglBM7tx9sIQ2~)~XC?)*Am8p$1<;W}E`D}+0MCE&z_SmJ zzWmDof0=ZUhbeSqK%pd@RU#;*7SNJ+yR{lb`-*q{A)ja+UO~QXI-txjsAuHxg`!Z> z1tG6)4K_7Z)U}eT<+lX2xLM4XkXG0*gbm07h`XxPCCXw>+a>BqYVF3+$5+*n>F8Ey zfV_IQ+5TFsH#=&lqJTc!W=w7O+_Wr>_pESeI+!2YUKak76TwJ;aeRgYWM^S0&@2mq z9Q$y(NV%r;Iy7&;DMNzZXJy=Oqawp)TO@)Dex@q>y$R?oJ1cAyXHt8)0p{%v$zSBpe=P{+Jwdr;o;S(EV@0ir%9oAhjeA=gZRy5J3dK`%F=#rV4Vp*C3jIs-r((Y7))} z?PdpN-Ct#kaScl40W7H5Ybc<^8?|RW;(Af(_Q21_Frqfvm8#m3_7n+Jtx{`|j6yQs z%FRw7-Cj$PU{y&?Jh&`ui8Ln#`|wiOgTwIA;V84ZhYZ)(GKJDw=J3VQA2LZ5C9dAT zQbozh;Bl`mwf5RowbyL`jX#Zoz{6#p2dP5JX5bp!An^&&$N`Zf^$u>Ao>t-TKu#Kq z#4+4bgnYH4RMcs=bLpPtrq>mZG#~M>T?d|a!lMZ}O5YeuLi zc89sttLvIRn!5y-2;j7x0{og_+BJP}`QYGn<$!vh+%fV~siW2#?Z=fyJUWX$sy^0U%|rCNn^9Ms%r$r}Mr3r0IvPK3!Vyx6QraQ}alR2ueN*Wzu>w3y@EJ%~6xu1^oE z%hOx6{x#g9D%^KJalv@gI}1keR0^Zzk&6RIBg?qv6~XBCXgON;pxD6~Y&$~3bizrt z$Zc@sT}m#;4fH~Zn`{=pF?&)?t;5aiiMhUt@6 zJ(KwR=(dlrO&+3eyMsY87=*r~yYOsjMR(xI;0HhUif1!l5=7u|@w%%O_M_XTG(?YAW7f|aNLklz&D6W<7X5jDhnRO;#&CDib z$b`&v*tE$Ok@3hGA7|j7XJnFrf$!QG7jvW0MprLLtY=n$SoYgjJXr}p#cH78lWeoDklEQ>UPWW%1ego(c!eXEQVZyEW?*d% zAo6xr4uh4oOTlO8;9$jdFbY;6=uk5q@@u&muN)n53NuBxAz$Gpe1(*+@TPnVH{@Hm z3Ex7>xA3NX#T)V!Z^Bnh`HDZz_hJqinG&u7$2}i5oK@2?&}7HgoFQ7xt&0!}G+Agn zIPEKnYiq0r@_0DN9f6~Rm2Y2t@$IXW_(gGohoi*mVM6NR(R$|U5OMYJXe|SCNyrRP zyNH;9kVjWS=C2PaTpv=nNl4-PkcI0*7H$%G8n)pZbTvY=CD9zpKpHaE#vtr;D1a(;u) zXT+Q*Z#Yi5898G7lLyd`<| vy{#2}psE2e!55zrRZyR|id=ycVh~w(L3YAJMssvTL>KozxuC_Ixf}oho57e~ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_089/afni_proc/_0x425675644f506c856820345a1fa543f9.json b/Afni_proc_through_nipype/_subject_id_089/afni_proc/_0x425675644f506c856820345a1fa543f9.json new file mode 100644 index 00000000..5e738c30 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_089/afni_proc/_0x425675644f506c856820345a1fa543f9.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "089" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_089/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_089/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0830f6e63c1d36b3dbf3cb1777d9942e537ba39c GIT binary patch literal 305 zcmV-10nYv(iwFo)%z9-4|6gftaCLNZE^upXdMuJ5Izf5Qae@fff#7rAnj_ zhlhBIj+P2(8-y%xJOQu#lI?7RR^k9I&2=~thag$J%9fdG^w0eB{quGB{ky-nsddc5 zY1^sBbFGN;HijPtEwY`;8!aVOtV9-EC%hw!+Y-5Mv4qB#h*3`mskon^zPL2n`eAIW zZos*XnzkQN)^}&0>#SCG4p>f5^*jGm_twwps3X|Q?uRPneL&xXV(t01eb_NeWN+RkKxY0qIzcbfh8nM z%t|}cUENh*Ree?U^ZM^>`@QP19|>Mu77!G?fQ$r>u30Ozq#XI+?6}B z8${3?oZY6W;G|G8c6Ns_4vMOnT{`>0)46~crery0q&DE}Ey5FL_ZK$<8iqY*w<4;6 zBwRVW7C3u5mLlcj%Gzco#|Wlg?9Zf{q?w$N45pAFwC88fzIArDG(6MSHt%v_K&3Q> z>!(pAF_NS_Lr5Db%{0FE{4PR(*hqz5?6;ZBp?#h~DwT;4q(7kf8$7$!8TL;5VHl$4 zepg9D4eqb?U1_)B0%8OtMTL1UR)9jHpg=tc!l=@lixt%@Df6QC`{RF`YYVChO=JOr z%+rFY*kyQ$K^*#8#teOg=KW$*4*QIyxZhE(U4$gW8hs8TGY_e<@wmQlkIeL)Rdaq98>YAGf{ z&IFl)(mv(O_|6o^v?I%>AgG8}sCKWQ3QGvtiEQ#gTL$7mA+wC=%x5eq6|HDw*SbiU zi)k96=NDu~IePehC-f}xnOhpKwUl-zmxB95G=;N?5TXo{6?htH;{&GP#}Y)0j9=>@ z>vfsuK0~x9s=UuNZqyvPLh@I2HKkZko1Jd>WQb*;(Ii>ao3n>aM_Fv?z?UdDm%&VV z)!yZ;XQhZM2N%8NcEeKky}dV=KKENM3y7D;?xc;3XoDR5D}l6yxjTv_f)~k2OMxyk zqkU{oTDpwRk(MVdPb6bLyxO9M4ZR zmjZA2hZ|acUEeM+G3My-ODW*+cn9OyTzB@H8?=Fy&GvHB0L{tp)vIn$vAJn^yDNB{ zeR&h@9&5X~)=rS4Q%IKDiSOO*rHMA8Z`{Nt5uQH5yw1IK_OlxsM6P0Ep;cAW7~j9%*-e~yIT=Upt1tfk!#{u8Eg~wDJ`y|C5W|M#8)&QF9Slcl-uZOHFmG^?z=ivItBitw05h*wpmPZT E0HFhV&j0`b literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_089/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_089/afni_proc/_report/report.rst new file mode 100644 index 00000000..37f38fb5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_089/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a003 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 089 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 089 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071698 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_089/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_089/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_089/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8c3428bcca04b9a43c3cd291b8f9f7c427d55b5f GIT binary patch literal 2545 zcmVb!>EBVPhOXSdy@D3l<4B(01+&ZBn*Qn&e9v|Nly=x#Er8bv-^L}e#q{n>*fSU#0mVY`EX@n?#j|m zmfk&YI*A?EiI0S7gu)O8XX*NW;#)B_@?(~+MTs9f9?r%q>7_@|F=n$}w5E2J9*E<> z!{Qqk55c>E=%XkkW)NcE44n|Wj*p30ANr0NMuBC<<0wc*V{`6_Xp&^`23xV|*rv3# zEus@e@WW0bl>5>A_Mb2Q{U7P^-_teh+Xi(f{go`qr9x3I6w8LRT`O(YikrfgRFt+# z8C9D&5saj6UeX^cnwF(k#DU|BkjgQnP*-$a?X=BSyF7qg-U7*IVLT{E zCAkD0MZt+2f`lPVb+g%5bYoxDADf-N(d`>qdg&E@DS26XT?b*kZ#*{j&fb$O{ZfRL z6%&FZu~L<`D^>9=K8hTFBodmSwS8TC26iCPpcIMo>(6yVX*EpcP}wuPD)@A%C~wLY8Z6CUr>7dvv-H8a{0UwX!?r3MF6Kf>JQg&y-r1M4 z^cGv09)M0yVN0{#Y_v?R-flvzz^>`*Lf_agY{9}m?$E%`(Sxqc2RHE+BtNwv_~ElWG4QjG+;e6wbsfPp>l+L4Mi zi^D;b<08f0+-!BHT&$5~cL7GbC26Nzs#%Cm5l{1`Tnhk{DIjsKS+3z(K3uMSEyO6w zagpND@e-rR;_w@$gP4vxMhqX9IXvdD$CP514UT6VJ`NbJGWoF+GQ31KgPg-|#9I2>^paiPE=!u$_dSXSt; z2A4f9Ar@k;O&#VMnKEp17!#XKJ8_1K(u7#T5r;8rczlm{s%ylJA9&#shXaq{5r;#D z;}Kfo8K*zvbvXNgStInB6J&A1yo7$j&E_$T2#Y`RI5=TuhOWi*Ck`j)F|#>xm(XT#X0e%OQ+tVz zIL|CDTI>zEEKE4el8%tI_)G#$mT>5Da<7aSc5EIytnrpp3QHVjhJw*(i6f>yMH5bi z$%8N<%LWN&OFSdt@TBoa`10;-OSP}RIsw2a-!5_B+6+g|XxRu+6fYYQezU}68ZL3{ zF>Hr#M+Ms<@o5P^L1GP0YfyoYr>ENd0QhL}-OxPcBeV&c;6-~u4fguIp3*irYS3)w zN9pCB38z1Bm78Z+D-e>84%D8}uWP2#KFHE9&L~6}SgD=Ni81IJig^I6C+9Y+RY?MV zaN}A1Ih?@_v!Uu;tqvsN%7O|MfWBR444|t6UA*(^C7l2C!1G?c{^s{X@=Y$Fhbag) zfT83*o0L$hZE#E9>nRG%_N^F1BQfVXqJbmN@qw8UE5g_pOBK0l$#T)$9&RDCY@w=& zircbT*{T$)7?n0{c@we#s_by&7lO1R)>&aywA0pIcp@@8d0wbwOJ?{sOFZh!y%l3==+5PBC8$av#7 z`3*Apre|C~pE!qp_)5jw3djJk1;FUI>&DmNjZ zR$nuKiEGN!J~h2+^!i}uHuRWUr`|Bz>b{`@t2LB1%_t=Eg0#4S^!jZ>g{bnHxOtY? zQff{M_IGEdefcVR_-edyZy(!1gf>dm`x~#Gz5ew^UPZa7Tj#1MzZpF0H`Vrjr(yPc z8o2S>aU6%FCW=5+XxR({TNvgxVK#a<6llGJ*|jGPxIECC#ws-oTZ%g0s2g>2F80st zSz*4eWQ-y#!sj{;(OVJE=q;Mer8RMaau46v&8lN=WiFXxxDh~ho626lQGW^*U?nyZ zz60;_jdA$53o9!>@e!e=Ry$LD3s2{D__KBXd_KK1{qN{umiRBs8L4Fm2)H;vqS~fmPKW{wh>&tHu#q~x5?r~6ack&m3 z5XIx&b2q|#3$M27D(wHy^GYLO5V)d;9GAP!U56Rx*Y){jb$z~7n=fFCny~Nw&w`0g zcodJ}R7%qIaX?}p(JTQUQgFUD0VOgpB-6q{A5y%ILtfa zB=W5Q&X#t11x|)2{)s1^s=Qs=f-`LGAI*pfE0yuu+Vt=zi_$2K+f5{S44<`WOZ0M=o7x?{3@$ zRQSUWcLkb76yIBP+&|G;3=-(XFF$bR*YnX~UK zVT_SyRt^qiVdz98cJTzmVgC{5PnPN*Vx9UbE{4JPI&vo1X4XymdMC0e;0w972oqLY z+S;a%dW&c&arn>)DdEdmj!mGLtEI9CwZ0Z4alYv3m+yNp4Y5Vf(8dvL3CA)bGs$D77Ua$)Pj^`T<$GpE>_f$%)f>;7+EB2t@IHoMX7${Ce^G z=ImK_Hm$vVT{a|_n37CL-hTV3LIo;8&JmPIJ;QZV;jF|JvPE;fM7eZ90VT`|%$?7# zfI4sX*&v*PeF4w~U>C+Uqg(<8NdW~=A69@aP;y!WDm(_|qR(1VOmq%q%PyxVGv1I8 zOjMPpC`Fcwm93(7FW~}9iH+AAU%!dJyJr%L@8gTFm%4f!gc({PB84Z#%JNFeYbgJ| z&i>*!>WbLJx{{W255B+6W)>v^NlQWJ5EK1fQ6a1}^)7FfM25bRiEni9jgIw=4Si!1 z-}vAgAM2YK`X(m6$-y`Iw{KsgBRk=#ay;j-Mm8n|`Z3{<%#j_qi9+SHYHA`5&)z4F zbGw6A(R>!9s?p3^Z{Dsq2l0M5Rfn|88g){m)CCViy45IkfU4Csvus_WMuy|zYIa^!;DWSzrGAQvpuzC?WY>+UoiE6^pMQh;$x zq-{+pL2Aji+n4)}?e=-_@l(4!>vh`g7k@!(!x$?(9*Du*ef5B*WoDnyp8A&K3E@6H1Vmu_W&{y{0UHo1& zel1Rlx}HZ2r=-xUfgo5BBo$5bgcf=k#gqsvg7~=5pFNHkMVa6MQnBE9KSm`=p)VsE z7W&rd=`QxXPN5flEC~v!DD<3L=uZRABHFjO3kmN7t+KIt$i*N^_#sNjkR(9z>E7;- zgy#-XA{>yj*5DE;jv|@>ulWck65iKLFHj(X;sQchZN@w$&4YwQTqqw% z8UsmRf$d^zv$NgxJP*P*y@D$U3dnbhTrZI$5&$92Eaz)g#DZkt2S_N98@NDV8HahA zm2uxY4cBB?WD@a=Ff>{qSd^6*CZUw5m_ss`Ac;gOoMwf-eZYN)h*24n5Sam<1KQjJ zm^2_HLzHE?l9PDX5+2|LS%*PPg29;D%@nIF;VPj%@^LUA46rUg?)PD3vLuJqfRFEi z5C-0N1xfjkAfuXb`Y4$K`n}2x*pllHWr?VcB6X3<<+5n3CF!3=7yypiWSeN!lb4 zw=$k2NG4{*!dzf0BR$s!!5j@EA0j_OhnPZypR_!qBC~Q6@X|}Jms8HDS%_-mEC2;R zA>kA~39>N>6Xa!1SOAKjYk}%zo~CAnaF*G1A9lVn<1Xo%ElSm~dnk-+6Y}D2&H@|Y_>}pyQfd6NzA+koYPz0fB$$|8jjAy? zM?~?{tHn!~LJ~Qr&lbDC>oWHbK$9De(Ui$`Z8$sPm(>Vy->Br8Sv_Bf4|0= zB&r6WeN35oCtS)}ujf9Wn$n(;Z+jNL?J?i>MfrASp@M$T zF=ortudH!v=j@SXPAcnf^q6C7{e@cJa7tzEnnGp6iQ&8?qHLX3(?tnb}@}U!e&IL(BE93tZy3gCKPK>S>vP`O3!O;b-GO`K@m~{sy#WX z@DPFuZqx0!?IQQ}8tpSK2qH%T$!sC@R$na(eS2GzMX#vGQ5+L}ttz?4{d(b9b%Vot zp{!$Mv8S&XJE*bZmwOPDUO|1XMpuX5pjooC%{|jBo!U_MFB0l`_roTtatOCX1W9b3 zy=E>!F)d6DYk}o43t&Dox3RZ+*^Eh^3n)GJ^b!=@!WQ4qSeq)f%VHWrzkUV`QgF4* zTIB?)+?DdCgRtmJ)4l_H1szhjcp0>l*^{Pcl^j}Kk&n-^>C}R{Q$QE+}-jc>}_p@t!-}`?!v3q9`0~en#~f%F@00S oVNBqE6!+g01Y%%>gkUzhN3%T$93mQ2s4C)U60M8=UL;wH) literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_089/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_089/create_stimuli/_report/report.rst new file mode 100644 index 00000000..f0e50dae --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_089/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a003 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 089 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 089 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.013129 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_089/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_089/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_089/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7f15a838e425808302414c1f8fbac7983472a652 GIT binary patch literal 2849 zcmV++3*Ph}iwFo&%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=xQ4(DxrbUXzm|rG9TaKhbL10Nj!dI{WNhxus zeQXDP=mdG|O#eauQXl$9dKaXyOUX){D$&@(v%7ciJ$rGnI1BuF@w z>LJc_0_68K9bvAgVZ`Ck^ISiOqr1}iNC)B23gU0$wZFtK_u5ddM;zg!yvcF;&lZbu}3JZa5gKQzpEM!`?B{1JyLt z+}1X)`$!9riXmobnLx$}eJvqV`{Hl^{o~)4|M9PA2|0#BI7Pn}a)Ox63)y@@$!(X! zjZ$9Zwl{?0=5|cXMy3xl3D+C)<7&MgN4NN%>F|)xA>>i6%CgjIs*Q59T&s5C=nKo$ zHH!}&b5eT92e!v^(rz_N+I(IpZ06S!n2f(_82saC7a?KA)feu#9}a{V}Z>#-y& zyRD|uX#tDd=D=}%WP~2%`|f_FrZ%e0uG;QY_oV$ex(TB;%EIc&ELr-p8b^!yTrNj? zTC&nCH=yU2UeL?tL_vgsJZJhQ*0?@|x>xH~Wo1v2AFHjd((Wp8bmI^m@Sk62HWoqd9II zz1eNz6*-YKV6yx|R;rDPTHUYis%;54-N*}2S7fmyf31$ByojUqOZnsMFo1h2 zyFZJig~5=kOXb#{5J&IQE7Jkc>Qw2aS*}$YYQ5a7L9M{8)0MfdvX|Y03;(!97Jexw z%U!wJxs;T}SGl-Vm(`>$<#_);Hy0Lsypt;#=1wmEKrECjCjrHhJ>1FVN}jn>$UP9n z5_XgRjgoN=dd76 z0&tL67D{N6OczR@ae?M1I8X54EXA6yGx(U=Xw=3UY80Op7(8UKO^pJJP7WpvK65GF zr2S{6M{$Y_3K_zd&tMi(*G$AS$OVngG<# z*k`cDECrqsDcW=HI~ zp#d|$XL~93dN#!a2743-11-f9#(u)uF#ZA4hUZWccr=I4C|AbF(9 zV{}6C7%^O-K^N^Z3$?uh#RWDT(-^tE6n_<@&-TL2j;NcyrBnNn$@H_B z`W#p(G$@?tG}2^jr1+F!rZcNWcAv?@h`}`Jnx@aTNx)$W`xeu07c`1ZgT*FooG?b7 z$YAQo9SlxDRNU~iJ*3HJKujX%N8`(Qg)`s~wl0J8EV#ja&g?3;tM z;c0%5HhgrPVm$Uz9M}{a-pL?qm^hg4VFQGEf8K(0IA}cAW+%X=#STMrjw7_OHbS%Z zOd9NVJDqA%VWdH=nLJ8wc2s!!gI2kBLArt2T5UdyqmM2a_y{zt5l+=H z*eX@^8K|B_+bnM8a-a|HJ}to^+6hDRg8&p(LDDA}FOM(2{pM)ha~$f_MD^pJ*LkLB4G|pv*9+XXNl= zQP|W4A+K)tw=}h&Yn!T;-xk#3Rx!VcG;zZaHXsWi?kZA;D2q95m#8DDxf@3xURFn@ zqg$Z?^6KqI>r1uPXshkA0{ZX)V`{r+re$foXN3dP!TiAXvhbgr2!;ZT<5L_UI}1aB zW?2a2*!$B(%2lP?rg{5C2@>=!E8}+SWf?BpA`x8hGgaB|Oh9khSz)6%liJI5FmJU< zmOlLEn^a(02xD>};qWl?+vJ!d*OlEmQMVtxTHOY^Mda-w5n6L1>sJ>qO11M04g!$V zQl86i!F66@Rsl^oebk?U?tcST^bRcnsVRXtU!GP#0Yu>2PZd>as351ib)xyFI{H1P zCgF_GYP4b2-Bq?2*PvAH!Gapyx&lhPUVYjnt{0U~7yNt(BWk@>uBc6EPmw^?D%B>* zC?xZZ-0TF>={6M!R+ZGmy^F$@NOMxK_b-G!I1C>i4l}EJ$Z&lvBW|u`4xb=kSe5X`mVwC6Q2-`91uBD@8EXnNd*oM zL|yJerWBG@kaB_>q<{ylR+M$JEQT zXNuuO0NJfoce|DHQ>XwvG&JrjV3*t&`~Q4nVc~l=5mIWU3)MGcI<3Q>ZSd#g^vd+V zVuX5PcbE&kx~}QNxl3??08ZN}z^@3VUC{@Z4-Q_J4ybp@9V0)H+G?%ddQ`5*!_(-4 z%A>BF?nMNbD-}4$LCt-Vybz=`mnTk?D~O5Ol{`WkP5AkRKB zOrN~!nZ$pMZu$t@zNfGmi_uAPgcTDu^MRjB-^MdWOg=}SJ4PL0pjek} znk=*(oc0w9Yiq0r@_0DN9f6~Rm9JlZ_Vvq@_<3=Hhoi*menRU0(R$|c5OHzQd~?P(T9>zN_!m&l*C=Bw#-2_(ipB>~SjonUpP;yMU6SYi5898G7lL zyd`<|y{#F&r>X%l!RMb6RZyQdik!#^F^H_&AUok9qd7VvqKo?u&q~BF5XKb+W%VIKPc77@ z{y|ak=GBw17m<){rkW-HNYcH?f)9{md>x<2huC(_(mi%g!#DHI@0;)ApTEO{ZLMP- z&f88ko@+&%w=w)OXp!wy-e@VQVkNTRI^i8*+?L37izPI^M2vbmNX5ep^~I&p)(>N2 zbpy_A)wKPDvc9|cT4zn@E2DcN@!<&$DN(AS-4uoFsb;FZfeS zz)Jx=)i1E3);OXKC}Ow)!4RNvPzobJAj;c+rhTmHcn6_~lYzP!7>!Lh40c_c3a_W=L^ D8IF}0 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_090/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_090/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ec41a1bd1c8f0e41d0dc2aaa4d63ae8a3eb2f2e7 GIT binary patch literal 1294 zcmV+p1@ZbHiwFpU%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}wMYH2qME5D%yD zl1OFmE_c04K?p@cMHMAH6!n3svb?*qXXm{3VtenBq9S;Sh~ziS1NKglQBrNb>nz6!psz+#BAWl3j{K~)(HGRRC8r+Eu9k8v z)l`xRXcJPti0@Q$OgplC0+PyPiE4KXs{aGoK%E5VWxz(_geedqhq|d|F%L0C_2<}Wz(F?1h2|4kuKe4kQr5KEWZ=CflWtO4G0&z zOYNp^DCqm0D|XQP+jZy~CFpwQzWZOUgpO<)Dpk|gL{(d6*@ZW5tDYr<>X8Y3B10({p{&5 z?jJ!v_80hLg5~(1GQfYvIR2lq@r4HrsRT$-?`*nZm{++>;mm*iQyEA902KgERdWdd E06A@almGw# literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_090/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_090/afni_proc/_report/report.rst new file mode 100644 index 00000000..a9c221f7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_090/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a062 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 090 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 090 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073215 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_090/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_090/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_090/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c9abab5d8150507fd2151eefd19ead04930b205b GIT binary patch literal 2540 zcmVb!>EBVPL>M4~1(Jke5XD(~Q$6kJVUoCU_By-w_w0x4Zn|zxa73KI&zcWb7Ur%j?PTel zi>8y>Bm_{fJVQ`kN?Qr zbny_p8;CxNLShCX_RY`sY$Z1C6zXdTNzcG zI1!AbZeG$KDVmn0SHywii;&7Oq)=CMUG22ZR=r(sD!nZI#tkgwiiz*cY7fNN3q?WQ zQwp>#7Ugoact3}E|C_qO{$5Ax^bDof0vtyPwgNYZvh;&Ts&4Fc+D5MfUR-rXeh^_h z2_e-t4;xLhrL_BIx2No@hgo_VdOci#=;mm{9N*~^tukhdf#|t>YcsES^BvMD=Q`h zM`EQaZC9$|5k8I_eEPf4 z$J=!V2@R~F=#Py~*IeWo{Kx}?0F{PnbRgl^bGy`+ zp|l#Na;WT?T@`$~RFpU63JsR#uhUbFXIXmxLjD9ViD6q64i|HwBpwTzTJP-3S$dnT zObvbzAI-IBCZF4ZhVr--L{Q?3O7$`p_|*DTlYEFUh{z7k>-<+w=k z=wyjeWO4W<(?Lwf9V3QM${ZeZ*keku%Ld0Y4xa=JSDF082^n4@n?cTDH{vi4nQ3mu z6UYUdooftEWDYZ(vsmT^Gr#a)iKEb4;+I^CryRx{CLE49jJQzX5MllYEG#Q@ScA(R zmkRoKk4bm^_#;%*S>nYME0yVt9%0(rJZ3gW?h@Jz&MY?5Y-%s@G3S}Z zMT@;5mxT$3S<(@*7N1GL$r27-PVSWv!;Z~khc%8krLe?dW+)hqmN;VSQ#9dJm^=s* zvTTrWw!||M4o@3@g)i^Uwp9D-%ToZ1@@R{is6n%xAElRj zCY=7jRc@VQtw2aVI8b{=zpj}|`yfj{JEss~V5N34C&r*_DCPmMo}AmPRwW7e!Of@j zXK)5L%!aCWwK|Z5D+?-60Qz>FF@UZPbn%N9&*A*12cGxhyRZK|BwyzOdYFP>0~ku~ zvq=f1+6K4uy`G}LY~P4MG!k>JBN{mJ93Pk&u_BCpu~d<(mMj;|?co+O%NDAdsJJbg zm90v#icx9PmNy{_K<*l9k1~rh+%9KFYI`qBKfTC~9N%&i8|c-wR_9x@+3K3zx&i!f zhg0=}6UTLt7`n;G@rgL{!UFuKmw~Yi{p6U$*egI+j9eE39s6h=q^=nKF3a0*YLKAY zJdNAa>N+gjDkWU-GiTX1X27?+g1lK-Q0;XM)H_|8rBA>Aen~K0ObES;2xPqRhx~@4 zYsQ{N+3ja?g*V$7e?K@%NOH4D3x0fP^+&Q zz{EA>NuQctHF|xp^C|S0TBqJH+v>id0;@HYHq9s`^F3*C1L^hKh6+*THF4`av8B|U z7VMwSP5b;s^5DgIZyKxAFl;I6e4}pE&AHe=w`Ya< zx{@)9un3>)I7CMxp3z%0nM-Tp1mzySt(#TH+{#=s$8aNn>^7CXexv>bD!@u?B)kIe z@{Mu$ulH6~e&HiRORaXU`WBwf>+o0W{Plc#WBT9F!z}S%m~&FgLe}`q5}b2@EZa*! z-Y^+@iwu?zE?yTds5j}3(I2Z_v#E6+*0pSWoPN@H*w>feB8uyc2HfMI=Dx^Z1VR*# zcQ4!s^DVsEs;jX7KglbNghAkn9&%jnI(HproL|@Hm(}(8R&9O@ThxSo_kR{lbi(6! z45w0(u8#u}`-q0|mM4Po_6cA$x{7YtW#gb#W46@N6rM>%(_Wm??g5Qd?D8sVZv%l+w>9Z zG+Ig=-gQDs_;QwG6Da0tsVqXRuLVh*FM9g<+a63qY|%5caSU6+v5W{gF}8J(vNz1@ zb=!B$B8jy;C++k@(~PMiIekhsVGCZW2qi(zpwh0w%1*G4d<)ac6aEK#)UiFe6#xLI CUi+^A literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_0xfc610037c834d75e2eaf02a6b1596ead.json b/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_0xfc610037c834d75e2eaf02a6b1596ead.json new file mode 100644 index 00000000..3e5f3d52 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_0xfc610037c834d75e2eaf02a6b1596ead.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "090" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..91c99cf7e1e64d205d165548e6628fba998f2408 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zk literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e633e48ba35fb9bee1b240d083ed9dd83ad72eb4 GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@HdiZF)gF40{mV zhuB*x%a^+ChGHlXq$sv!5ADOS)F5byvKULGN>X;xBEa@itN`DpJ#7DIzhZx7hm?Ft z3a{y0A&5ls@OK zkn0<#r@PqeG;_V$!;+wYid-+bx&GAWETnylyAtz0&?*{NMqCWSn2%6Qh9m}(PxtqJ z%=Jd5Xe`fkUZqSC5n`X5wFZ|+aTL-RcrAxGmhj#*y+DEZiVFzkN%)t2q%P7c_ zw21r8X}CJWB9(}zgrV^Q!J=$LFbO3@MI4g321z7R;UvxV%|qUUh!~X-36L4!8K5oQ zgGmEIQbbvrDLIXIE9O3qk#*=t#2-wkT~Dw|W3FP_Lp|&d2m`E(kNbUCnKaH|HQ?iW zAcTSUZ9x(~B*>^{l0HgifIcrRGRBBcq{QMF0k?up33*FFXM{z7AkYB{u)-2PCgV4u z)sKl06~O@lf-&w*Mz?G(&2l109t^@rI*4C^+@#_u;tVn)q(ati%IwUjAR=Sa(d(Hs zs}^HLfqjZqG!xYA@zjhB7#}e-Btn`cpXPTYC@eedg&|>>`7=_xmSO>$3DgN{GD({z z;zr8j7|GbISda;9Wu%v2k8BhBs9A_|pu3lTxjG3#BcZ25W|LAX*9iu9oPmE zAkk#M<+@UyEt4+knk`Dzu{#pRwF!B3FJrz9aB|9gTBQsPg|E{Ek9 zoFgLt>DB6m3jqn8(`Sp_-&L9Q4ndPUj?t9Kb?xhQ2cA2nwbR&j$_b8{;1t6&F}u}C zF$=JC;4cjvI}i$7lg=LIg@`IFDeKYX$4eVHHNJV-h<~1&G~! zeNs1()QfKfq95G-;mLC|`>xkOaB49nT_uMVw-EL;obsbqgHMt^s=QE@+8OZj>)@cm znIx(LpnXi4dB2=?FIR^7vbBU z@NNG$-|-wXQV`w+j(g_3s!|q^qelX>KB;;;ZGiH5oFz<7`a11eZPtSeKQaei7aSc_ zUY~sV`eZ_UEKcyywN~4f)OL5rd3VUT+V0jIm}?*%pf*Ny0J8fIWMe*Lb3SBq5y<9z z$ku$w)*_It`H=1TknR5gY4ov}8jOdJqz2>ayre&p8a^0uaW#A}bE?%5;DoK)7|_%X-U_6xPW;}pu;Glj~I6Tx{&MA15}rt=c8#vhYF3U!sL zR(3ffaL7U#RC})SzkBibtu-Lvc_>eke=7L-)h&P1Vu;*sP^Qz z!b1ouxQ^R$n|apLTeQ!(Ac!3KB(;UqTYb4G^zCg;=H0v+g;7NGW?6Di`t{1Q@&Rtid|zKOc2HwQFZUrRy@C2%jjs;BL9<|KoBO6&IJKc3oF~+I_rp3Wa|pLY1WBx) zy=JaKF)d6DYk}o4^I<+Sx3RZ+-Hb_|2`D}H^%@l1!WQ4q*qSM|i((o=zj_7?QgFG* zTImF;+>PR(D3?un?}UD*;d!n5{)1LKxPOl{2@bs`?(`b>9(F)zP=Q-}xWkocHcJ>q^i3WG n5rO|<)PIu`h=CCjfZ6ye1#vA~-R9q&WIgv^Jn;JI<_pb+dS literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_report/report.rst new file mode 100644 index 00000000..92ec7c1b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_090/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a062 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 090 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 090 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012333 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_090/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_090/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_090/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..322eb2a71528686327db8950ece1091e38d941cf GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&hWD*_})krq`YrbUWI%`X$6El1K|KwwEi!dI{WNhxus zeasBrg1+@P^e^?LKcsg-61$Wv$EgyHJv_U6_ujJ?7mKsN-F9JsFI`B8XRoR4%64opA#G1~Y?^eS2pSCtX+u;JKI?a|WA-L1q= z6s}!%9r%W6_-EYMQ(YG(N8##zU~4{c@?#XPc!BL37K(;T;f=>IFr?Am)y8@h9`ZxS zLi~w|`oONo+p6bc#c`3XxQ2^N!$z1d_iaOQJx5dgq2~mHp)zH{D>&$#Ak9|{UCC@` zc+Eqqj}#0s1JeL9df=%sncCMsJbrKYum61zt{_{N38(P)LPp4?vqCzXmowX?+*T=@ z=N@K@TUj9@W+TIcnS|>N=}EO-kHTAg&#-yO=MeHJRV7JmHI+uWS*}$(QTVm#XsXEv zwlOI^;(g2IIdQL=CT%_|Bz84_PF&!@o-+LlT@?NVc zcUr*WwlT0B59xsm`M!HlsVR+Wv#Yc_)qU|G3U9)wh0?HkGD{M_sYc;)Hj~Mao|Ysx z%MIxHt?T#FnVgV=fh=cu23EN~gt}MjRwa2~l%6Q9uH5d*QF!AB9cHX3ydyzpxhp?W zq}JZkDEyp<%gYBCd3>Rm*)A0MQ*`DT_JGGEK`Z-G{RQ}eM1zsXPqWjM#gYOd^;T`V=vCVJG0EHf63#-=5ck+o`DGjCu8h?)Q?;RHZ#X3j8ZcRUDaqAFMX4TC_ms8>oNi==EulabOY+z1i1N!Q+`N=O&I)|Ex6%i* zSZd%8xw=?x?L$R=NUux>K&w-wmu9tAX(;t_vj(*Sw@z2$y7GSdAzb(;Ewb=SIa%#W z)y}1)EWgght-7Sdbty#$|GBxe z?%yiubI{YLLpzylNn^0%#W+i_HFaCu$!AMA*qwpFZZ5Nv&y_Tlgz(34Qz$tA@&sT% zw#=8%B%Usm9&oc*t)Af5614qaTBCF42VZ>mXbXC=6+a%y1fqj$dxAH2*hR$MxHclBMH^*S= z$QcY0>{0WvI$}&{zvBitX<&Df;0bp7^Tyv`=iS-PlpcIJ2Ouj?6YQ8e#hx)p8m{X3 zNy9@Y3C3eL!M;VY?w$_Px`F-09yUOr^%pHjhmFPyZFT}|TI?`17dS#2t0OdP&!oX# zx6`RMWkwp*n(?FbW=DaiKWLSE7o;l)lJ}mA9l2YsE7j)nDE#b#frmiD>cLbUgRNXu zo`dR%was!dlL38j_eJ?7JcBDrMU>k0GKhp*GbxY;`F4jYfVKp3@r$EFc>a?Io^^Em z)nEGftGI(aOrawM3MJ;O5J4$6ftIw_sa7G{*SzBm_*m=kGV(0L24#jpJtLdX6@;QD z2w7#j|4>!(np#xU?6#m39u~4iq~^ACVGFVV;;tfgh_YDFcCk7Vn|o3C>1B0f*qRyW zAg|tUw7yYljkeM*%b*W;7*oqRH%wFIT{9RMHs%MGn}+}7L@*R!9G_tyS!o#ZRntTu z$3C7eQmV?`HqF~_N|2xrSsAxiFH3OQmWkkkpQ+0JU;=u}N()vh?Zq z-zNgoL>Q9;35SQNKgP!#sV?u;iMsvl_3GBwOd@ZWiO^aQS--n@QL3Hia1el;ma<&- zAzbGbW);wc(?|U|=>B(LMIX=-5St>1^VMku(ysn;(A%`bivQ3Frw63<%-f2_hk`Otz2!Aj6yQs z$;?h5oo-VWVO4QW+`A}ji8Ln#d;db%!=vEQ(J-~Xk95aVQ@P?s>gdJsA5w7@#jZZQ zR7LU0;BmJmHuqZ2-^C@K2dP5Jrtj!nKlTaH$N`Zf^$u=Vo>t)SKu#LV z#4+4bgnXqemz8O^ec_(vrq>k@RS)s7UHh(j%A*N6O5fjAbxgfXd!`sp z1d!cYb+20~KZ6R;0$t_41$Oa`aqzEqmX_YIiI7q&U8uep(`g<4YJF+8`orBzC&Ks^UT%~{xc@(iD-FAjWAc`2n9OnR4n&+D*QbZo z)#I{kh;=m(yyIq+<0hPU9!;Q4QQ#go~}7Po=J{B>6|=!G{8+YNji zzwUXzKYNFzVBd=l&R3U~bkt8RzFkuKhKbf^FQ7J4y6US6P~0fpPQl-oGwW2glA29O zkqN2kuwjucBIS}ZK2E_uS5L(Qeb2E{4(3QT%&krw!zMP4dlK8|eFe%So7#n0ps7?{ z(eP*;M%U*gHdAXrEdAXpo~(qQV#QbSX}VF9$?S9{tDq6Gea!iIw8oK3srqy|GqAA% z5V^Z+NB-Kzh2S%Ec(~@+82M`ubf6kG`86Gk*N%@lnVBM7ldo_czCyxRcw4@?Yx2!q zhi@+7n|oWn`D^mcUx#l#;hTRm-}xLeG9_FAj{6>LIO~S3qsgwP+5@zn*~~*I&}4yS zU-`HS1kjKMe<`^6uu6_6F!FR6`;`8DJ567|9{g~AK!)(@kR>fl8`B& zHjkKskjIxoX0Hw@Tpd!lPDtVEkh!Zv=B^VmcXi18)gkl$M@Uj1*Q*BN;TNg~;_7Wl z|3cO9vqN6L8h&=j>sP~1hFqvX-}$L+jC@(be~yi_m5W;z*{NcG^FOj}-9Pg0Z>FY| zwXd2OZKj5>Um|bXTCAqGB@i3`k_24Ou>JM5ien?#WI?CQJc8WGY?H4zb2{YY{1%_j zh&fN*c*Mti9fO)H=JGsu&q~BF5XKb+W%VIKPc77@ zuA-=T^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEF=2gqB^8(f&VmRB&6T{1t>qAzYY?y)N zYhdGbLR-c0h`@dN^kxi4_1!#%)7`f*JWK{^%ip=80y9_Fm$z5fICj+^44i;k_W=L^ D?5vud literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_092/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_092/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..c760d977b2cfad3f21576b071a24597ba7fa3a90 GIT binary patch literal 1293 zcmV+o1@ihIiwFpR%z9-4|6guzWMwXJYixQhbZu||rB>Z<95oOpv}wMYHvLeG5D%yD zl1O21FS*<$AcQKRqKXn8iuwSmEbs2@**UMh*xtLOs1m$XRPr0<0sa`?`L7u7?tKsm zDH0p$cI~leelzo%nf!e7cee3f{kV@LFE2}oN?wBC5+abJ@RBM6Xco2_ra5yfLNwgHDaVO;N1nZPrX}D zr~#63?cGY`-K|u~oR4a2YeJ0>OtZK%ReGEYH6;QjAQ0NKv!~yBw^dm#%$3c%Tw2gM zP2uWkR7tENITr|NHK)ShdpqnR1W2vY=*68bQw4O-1>{QG1VM%ahQG$M>%GCzNk5Kb z^gQfpWvRvemAJhiNHmnF2SHd}1#_vUhGkVzHhzEnZ*yHqb!mty zL6TWoFcn)2FOdQ)Qy9k$%L_1;7NvI&&sBmRNp2WqBnVW6)>e-3(ios5T$YtJ3x9Wn zN~s{V!jwTeoqosgqbNth1tN5=Lm=*?#CJmH31U1G7lez zB|{&!Cn_l+1!JhbB#5m+)0%u_ag$M<5p;A+GHR*8kGcFIu0{d^pMYir0ScPTr8{*j zLplit4}~Zx$Kthj4~$hMQ4%AgjV1ND1+ptr4Z4yG>HW%ttO;s4qA#gsOHMtWU9IF; zs;MLs&?cmO5#Ooin093O1SFN|64maNRAUJtJCRKxXp2BRD3uVzh>)?Y(zK?LTRB9+ zTukx=J-;AR%F)C3dvRb<$lStsqos12g_1lZqAi>?gpdfxmf#trO$eBVA1jb4GJd6p ztT$CrgbdNLtn)t8xY}^!4U)gEs|m$|TI(IgrvoelgC@zm-n`pwJIZ{^M4?2vy^N+h zs17c#Kdoe1J2>wxw_296@7=wb^jX+?Q9`;nb~|rn#8~9uUm4^b%-vq95WLI|IvPwR ztO>C_=$I-wM_L|q0KAe0UKmGKfPfLT1*x?di`uyZH6VPj7akhEsd3V1IV1 zy%Yt*KU~xDtLAoziLraTUn&W^`2vjnGX9m{V>x5&oC$E- zZP%I0-1d_U=TOhs=XJ2CTWcs`{F%EMP9xb^b%yS_EizJe)oOo90rccvXgp^v-PtnNgL-@;h@I*mQK=fN-(1 z)NY!Fg1+CqVh6py-Gr`Hg0AQ8yZ_}%=*Xs}Qax==RJUc8zxBp#HM4|JJu;!MJiuA&uX35eh5!0tl|=sl4_MrGa|r+d Dkz{#z literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_092/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_092/afni_proc/_report/report.rst new file mode 100644 index 00000000..c07fc37f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_092/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a009 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 092 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 092 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.074907 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_092/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_092/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_092/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..618d1e088bd3553548e9d96e676af320b6367a15 GIT binary patch literal 2543 zcmVb!>EBVPu=~w-}@i>3;F~4Cwdm7xGTv{{SwV+`0d%VXU{o%7W?h~dHrwy_+%~rOTY3-cpPGh z_%V(~$i`F}B8nxNgkccHS$bVN?dfBhxN-JVcKa{ckJ+ts)0*OllEBYe_tuu?uB_~2 z>CKC#lbE<9K9*(?3PTv2rJDzdZ^z8YPg%MVC4NjioK4o!OZTB;!e@Keo;g{1C{F?p z%P(C#0`G>hkD`!TL5O`TBq4T*kEz@k`NRsNz_#K^6eQz`weUo?Xfk|>?bsrYRoqcz zbgBq`I7x(ZKU&}Yv+((U_x}B5x`BPiWbUM&D@CPTC@FaR})g73 zLUANlYsH;vO@4)sBjS%`$`Z73VCav*4kQ|sB6*RW5q0wYd-RWEPc24xS6FNoUJBsMDMm1 zL2q*5$1HEBOSqhhPjN%+HJ|ig?8XcoyU2%fz4XY`wfm65MOb85t;pZUg|bv;4H#@Z zF-*1HwA3SY-|A`L)1{KKtyEdCEPvg;W9-7D4|vR5qamMeAF&q1~BP4*&U3X5w&{=ft7E5(o zz(JJb62soYY;Ctvs?%g|3C4Tn;%=o}w-K8np5;xY9ssB?K;vAqQpfXrxKjT{icyr~ z62s$@6-JRQ;FnwnaUFMpI6kQecp_krE5$A!9M1)O5^!AO@)Htryh09#g2QekU=ecD z!i*=73qHHh7@jBs<~nDwA`Iq!;o%BLp|`>>g%r;Oj0H>u90?c+p}--+{SSCpc1U`7Vgg$qIPS4;I?yH~_+H)=srW}j0orzizlwNT>!-B8S;6VpMpk7$v zxFSv`G^W9Dg};wi&`*TfJdP3N@kgEjr`*iQwYmP32yzi~n`3tc9S-L-bl#8RKPsx2-(ZeB;aHPN3J0EDu`p^h?wxkD?uqN3z!=U#^V)^xcUrD1r;t2 z!i26GG@P&SoQ9**#-HHJySr1YfAjSz07m(0g#*{&I3nX!BScZWYDD5^;jW9-Y--0w2%Lw8a7N(Gt6%dB#U*Q#8fP_L3Ux5BhzzV+z!u)ya?2 z%Y6$@f8Z)N&aqY?B<~$+eRI&zEwyu)rC*#=h%m5HCs`0<&^1--5Li#nZPshWBJhLj zj~h?m3~pLY&FJY3APHBNRGw|1hH8<^pz@f?x|6 zO76482&L8mw~YP1s={pF$w4%hbFL$sIP!=O%#7L*#=cyxDm7bCO4iQkF0v{%s#&PC zqgd6u)lv)ePS-pk{ z{BT!L^@0=Px=0S)WK4W2kG-$}|Lig_QJ|k5(-?aN=!%i+VxVImFM>2wbI{{?`&Ath z^r1-O_VtDV%eKx47yK+(_6Kv|TV6rgt}dzerVi@e9?Q~aKm4#Fm@cN2-9;oi+4^mM z!!dMoUuW$0i`TQ;*mfDcU1vn=49WWS`9)Fthj0;qoYqTH=`O7Eh7bib;r5{)0`GqZ zBKm-rfY#A~oNq2FpaLZD{YR#ywJo621D$dH1&{tns7bgZblW``b^VrDjJKgwZa_fo zfo=j5*VRV@W_sQ155Uf6&|~S{M$_tO2c`zB)>JzzqmayZipv{Ff6y^Ch$^p%8|R5F zqvot&e}8V;XU~&+&nH{A4zLqMXscYiz4iR@i{EVJRg|0h@In>kH-r0wmex7wHmyNl z2RD8NJ&f40~d_-8O)z4Mm($hs9{$icKoKLS!|7&`%s-~I@>YEL#=1E^zQwJo=uL^Pn-7##_C(daHH9TdmPlrQb$xMJ-CS(d)>GJ`7VNwKvtTj_ zkK+lPN=dpo325vi7RDQ%2qu>&o9Si<#SX^cv!m$5Pv(WHv@Nl>lwwgD+2xuvzgxAc zmBR98M&e0f469-*QW*}qjWEK~{PE}Ow|M-4JV)3e5qssCXMasEN0@r-5Pdfojq=Vo ziF`YNv!#<>fs-MMf98p&RIS~uFdt4|x;n`)y-fTtiD~}a^Zsc0d}YxXz7hX&@MsGb z=9V3J9vsDYwxayej9TE*ovr2b)155`#fXV+*RO8DAMw~{fOWISC^$cI=~8=d>n5PW zAAh_lu`Hta*0SUFsn&9k#3p|BmNUOtj1D8>$G2`a10UbKeH8*-4$so|+q|@Kq0EIb zMxIqYJXE9+iD>NNDTc%TJ;9$WHQvTL^Hp9BgYR`jrr6=uE%tgR^C{p9xv>lrR=c>P zut&XRw2U~s?Szc*Vx~w>pHeN@f|sgNSyD2nw5zbPQ|u$(#;o$B{{aR}gIKv0 F007}l68r!F literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_0x579e7ac5e81b39521c2b1429535304b1.json b/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_0x579e7ac5e81b39521c2b1429535304b1.json new file mode 100644 index 00000000..d67a4bae --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_0x579e7ac5e81b39521c2b1429535304b1.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "092" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..552d7958381db3035aed5fc2d408ced2ddf1cc0a GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zOA_SG2OFQ_^f6r^b z=0|ze%o9!%$j#M20@Xm2W=R&a+$@ubfuu5s4s-L_qdsROl_DTIk|G;Kq==H6i-d)_ zxp{JWoi>|Wxmon70unNro4I;!J`Du#vw@4d5Q_oADjHY!g&g){u}@+cL5v`u?mYf6 zH!GQDu{zaxjd2aKPXjn@jV_56q|ai+HQ%SP!uJ*1ix42tLSiac8<9w$u@^&MNbMs? zYoORGv|Vg%b{=$_%_gRAd!^8r6oT*OnOTAZ2oR9q4)c{VV+kqxK@eJIHe4X7ioz^O zi@fii4AwP4iuiML=WX90m~t!wIw-3Ds#Vbj*C>(_jc3V_keS7~smJafYjbAKxP& zin#AcNW=(;WzD2~42}i*ytK$ThX9nK@{l050!&^dY*#GIBy}`0b8RHd!Km+J<_Bb-GR*LkR@1V`uG}Ab2lxNGNOV#ZbW%{tbFRg2v^5Wx+2QIB>*UKJ0cS~!pwe6J?JUhWFhFM~FtCvz9 zQsv=a8hUP^FGb=BRkwT?TkQ$Pt&K?coK4s#$fTC{5NFjLVFNX);%IdYV%@7CuzRnM z8a9(g@lBBQ!+SqGd2VOlYqkiUT3oBTR-;P2Aoet!@}pM6Pe>nDUg%2gRPgd^cef(A z0$stN1IoC4$3m$}uUCJ5Y)X4ZyzN==wkLSo=f&HZ5pQP}yqyW&&Ux{6XT;l`1#fqP zxBK6C$8+pR0eBlRKDOsomGKY`9!kmwP;IVvF;pPpEa7U>x7n@Lj(e!%kIZhfhmLkD zuaCZbeKY|+CMSC6Ijc1XYOS~Ky*p%Gt@Uai&b1*ugf@=oVaVP)AzNpMY@Z#nJxj>; z*&#b;hwRJ}vU7IG?%5%`|0AU3$82n{9zGHqtgG{a{zz>2;E=Pk;e$iY&W87fJi$Oz z(C<0MoIL%?8Mn4iA6fRKa{k7TJ+{_f=(TmPVAf+RRMx!+&r6U+>m-}b3&0tFOaLkB zDqXE?3l4b5q6{iMqDpRVp;TKO!^zDz=aBUcYu-SyhRT}8jZih4t^1vB10^USTB6!h zV}(ZuD!9#hr{2yp->k9$7ZL~@1duu*_10W2guc72sl1n0qka^Dxl&5*NxxZmR^H&K zStxXj%6H5qYlj*udbxv1nH4e+dVF>G4Vwi@*W9tq!l_Gj_dKbdbw6y7vW9p|Bv{18 z>1*Z^ifL&ztP89Td4Th|y^Xy!%XUnOOrrGMF-s`8r4!%SSUo1S3o(tUUpo~HOK`cU zTImE;?n-gfAyf{OZQsVdLiQP6ysTN~CroRruHTvkypJVh;O9@i{rgY*{ACsicS%~T z%kGMWa@opzZ{z+J+^4|?JZSlyt&MgoX#1^hduyY!(P?<H7N--r>qJ+a-)5_9lJI<_uUqTV literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_report/report.rst new file mode 100644 index 00000000..7150d4f4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_092/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a009 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 092 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 092 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.01263 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_092/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_092/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_092/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8f20f7c4466fcd36081f206c242991902c34e7ed GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=xQ5IDtrbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B1?^Ryp?!uvNT-*5jh+Q5>{7B4r%E*T@Y~(9=X`r`u=p1E%i`bu@$o|P7k%QG z-l>N;(+QB@*K~xro`w;JL(g;lAdc=z=OZ12Lo0~Ci`V`dzl>L-Wp#vnY`RWdd$=%j zcPsT1M=O_Ihk2Pce&__IjpE@#bmI{W3~97C^|290 z2mH{r5r1rZ^~E93+*n-{YAf|A=R zi5sPSfy;>x@|(q&n2k&yW)iM9^~^bVr8H za#wk*%B|fear7|{mzNJQ^7-OsZmYP-pP*CUbOt;o30m5d>(9XtBpQr-ewv*=wvr^m z@7N?}xAz;ZinJ$HJ2DV_XxckwFC+`AROKg1tF6xR3_OyB!2+ulNohgC?<9VSH%D{a zIC``Fyb?$6%$F1pskds=MK9CN_etK)FX1c{4RMbhRbI4V?$TI0wKNB6_Qq4CEppWr;f_SEg>b|GKF;m!;UcEsFvK`iMS2@#BwrciPL z6bQgUVp%AmNitn1eZ~cvpWr;fgR>NCzRuudYNJsbYp79tR$%au!8SDtEIK)uF!;=+ zc$4;@nI6R{GALvSTRwwXNL@1#&mb2xI@9Q#2@Iw-^H^XeQ(mZ-V&AhoqSHu|v613ahMCT+7TJ9!3nK>8q-&Z!+a>{rDePNJzg^HMHVqb=v~j{1 zc_M?UBX=-Ju}{s%+K4fs{jL|{w1K@ziYM6XpEv#tJMZ>ZuJqZb=Ky5oNs3*|px8GD zX~Wa}AZ_^QIK_DEr8uxDHoTKT)-Z7}-@^t7_5QpC>2T0^uFXz>O^Y3d<{U?8V{L?H z?U^*#?RGlVrou>rS~Gc+-t4IG^arhS?}Bs%LGso!siSnub+y`j7DpdlFz^v*SRN8M1iMCnX%;i8I+-y$mAZ)=UayLB8Fg3ZN~6T>Rwl0G|Kk zfoC5ceg3CD{yga*4^!yKfI>+)t3*&rO`s+3cB)l~_66_y13u9@yn=k&bU>M5P|wKW z#iFpO3qoGq>Oaubg05|5+l;C0o|%@V@tze9Ob7D=+snd#av~TCFpf`gfb1*` z1)60ckYn#p7b#bjZky)qS0zZ$yR3}ct(RrEY>Py2!Ov7>zcT^7WoLzr;!J8U*TKBi zCRzIMn{QHqX(5csfrP`u%qOmt^lEh*=oXQ;i$rM6iLBpTyeQSqGdKu9 zPD^<%{{XJ@60-_u!s(;_40Qh+u%dTp2}n%|#QE~H0tz4k-+rp7QbPqf-K`VNKh@Fi zF*ONigjS;sv+l04#kdBgat{{N=++fb;`Qp&E^)o6bh_Z@Ll{x(t#UT{@uNC3lScL~5(Gdh1cS9uH5W z4=Rtka=I50T&`5$90xV`N%BU((}Lm7r4wOt3okax65RhEB$b9e*R^hknft$hi%s0#Ppk6bX`^iG2zJe9&|dFbN6(a18ccttS0Ib4pGJt%f?2HTEM zH=S^jEpi(id6$yQaeZCfs}X(FIN<9{bo>2eFbI7|cj4L6jBde`!4H1u6_2p7Q6L=7Uw1XbUUbuR zyfDDY>z=p!vv*i34*YokYf`8+aDXo02z#kJDy4E%jMv(Drz znc0L4nUI+dn>N`ZG9EeO;|%=sj7&1n_gy>VVvbb9xz(|2I>g5HjuRWBuR@vRGdnN~ zG?iwkIv%aU=;}F%^~?$o%YOZmCoAEnSPe9Ml5Nx!GCP~gt7wFr0CNEzt#IU0Y5`r& z46LmIMBdKIVX(4xA@~d(9IUtwM!^aM9cZRQek~W{m7^n0VWtSz9lnK>Z{dgep3fm8Q^FPCxaY%$vuZj9n(X+RGeE1k^#X(f zO%~b?PWy_5wKdiQc|08Cj=<5u%GWPH`}$={{Jc29!%<>&KOuGhXgzazh`73cw3dOn zBxDAtokz?-$fHXk^H+xyt_~?&C!}z7Nb%~B;&nobSBETI9kTF$ge3KGy=ovHex_<5 zu3ne)&r}URIpp=L;U|Z@el`4P$his(+#lP<$d@Jj$HX{axwvJKohtEn{zta0`-j2( z^~|)g_B0El^~@0VOXN>m^VRga1QO$)lYr-&PO!RCaUBGkEa;S(N02+YErER1n$aOA z=hygrM$CEg#v?iA8yM8wrdZ%X>@B%rkf@&M6{pR5c(b`216%3hMJlkrO!~29b3eWG6giG)G57baDR!EujB6xf}oh%6gh# literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_093/afni_proc/_0x961cbfc6874517fad8958d745b394e73.json b/Afni_proc_through_nipype/_subject_id_093/afni_proc/_0x961cbfc6874517fad8958d745b394e73.json new file mode 100644 index 00000000..93c3c88d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_093/afni_proc/_0x961cbfc6874517fad8958d745b394e73.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "093" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_093/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_093/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..eab096a55a1bbd2ead426c15d8be04181ff4a0cc GIT binary patch literal 305 zcmV-10nYv(iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zx}vCf^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFuBw(>=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>brRir@L=sc$f^-mcMgF1!k_UFK_49ICj+^7Q=6w_W=L^ D>OPwG literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_093/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_093/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..50a6c052d5adc545a97e48bc60b3a58e32c7319f GIT binary patch literal 1294 zcmV+p1@ZbHiwFpR%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}uw{lcpbP5#r$# zUJ_LH?vl%00z#+~Dyk^qp{NfgjKd2vxdRPX`>mk@y*g_l$*81HVL;@kh`_kZ!1 ze$TBENptXSgJzPGLaW5P7GWGT)d{=s?t>>Y0kKT0a>Ph&z`GlSr`~PPZ$`9x(DiOT zrUppLwRbC#cefHHGd`-UtqCuhQGnH>%GC@alhL| z=&i7;m8BNhUF-8WVhL`jT{HkMT97RathHRw_kIh`ykfEjjgQcD0ma zsiu-lK%0>AMSQ24W7?7B6OdFUOH{jCP>m&o>_j$&pe+J%zfeLDBSOZ~Qqzh?Zsh<8 zb3Vyp^!%JmDMt_A?{x!3#=_vCp6NM7x_9B|< zpgOp`{0)x+-g|LUb(w7>9er)qJU&^>~_}3h_T4Qzf#EBn7h41A$XZSZfh{5 zuqMRzaod#f8Pf7`JJ2d@?SIy4v^f4ba_YEJDng8kX4 z=28?4|8Pyquj|_dCdTgVex)Sr?zb?G&2{g-y+#{Y+UzVgEzq0{UcNktDmFJQZ*vKc zcQ3A^Jz(uL*E%V3bOPx@I|;qJvoO&?^o^U?B)TVunAe%N-hF;;gUD5EEL3z-)9v<# zhkaChj}WVo>}E!ALXg0N=rB6)W$bqNNGc5k&J!pq9=&t7>poYFDC1xIJ(e-X&X@qV z)pVV?%xyhMaSrv2eO?8Ny0w}T#-F;I;WUzsm8a;Q+ax1pXFc>+T-JE2&jjNbg)L$c!pAmfxw{z^0?C284^9 zrFK&{6!iVh6+7tt?K*Ug5_COt-~TUHLPs_Ym8xlLqN**k?5#I$vz{e{>X8Y3GNe_lF>}My# zxPJ`&*uTXe6D-I7lmY%T#_|7*jo*5}kV=3Q_0FanhIy6C6wduOpOkU*51*FgdUFW? E0A(?Hpa1{> literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_093/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_093/afni_proc/_report/report.rst new file mode 100644 index 00000000..ee7f7129 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_093/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a020 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 093 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 093 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073071 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_093/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_093/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_093/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..232d614e3e7add2bead79d3f1622e03b14e2b1a8 GIT binary patch literal 2546 zcmVb!>EBVP* zH}qlA=f3u5^hfj$^b93y#+S5tSp$Z?IdkUBIcLsrzL`HQ|Ml-*EMV6B|8x37x{<6IV;mCO_tM7WrMbDw3p;6Y z@2u%KvK>1*6eb}G0vMboYkRS0M%2iUX|fu|USzvC9W5o7oLW-AR5`kP5|IzL3k8bZM(vELSB-kjj<3w3$-1 zu^qxl>gFZwsjRALa#`%#o(QQNK?*fl)0B40Xx3V_hTKh)M~-hIM~pptT74`=ZXgQE zuAHN7F<&TE@((hY^`F-b_IKNAyQ|CHCg3QHvFSU0m?l@BDw@9AZt2}NcyYxZdVYwl zIDk~&Jg7H}rrhcoovys69Hhw#^tw0)(bG|y@=8vV<-8w=FM_C_lZu5R zbmRp)v!r5^#$00M1xW&&ayKgPL@RYo!C_E%0aVTSN0UStAT@$ zZFk4+$273ItUc4)9b=wn@FNQh0+j2D-iCx<&+Jlb9`gJ&x!8G8Pm>!bs|g%Y+l^V! zYfSh#&D-%3&ZlBi+~RxnmmL_pIzfjH@}OKVJ=ay`38ZiqmfbIx#1B!fC=_V}25T=h zU2fJ5`9R(^Ituu7DPPzulxeUuf9PdYarlla%H2Ok7qqBdbd- zJ^1&^(o#rvq^f1_Ncrtzsp@zcC|BLljwDqBd#5CA7mHQmXY$RebqxB}tZQ4!S4|H4 zVTSV*yEC(u?NYu<;+;7d?i8i%Qn6|xIz=?enuV$lphN+QGR;yIPqX2L>bF9K!VKpr z9v&?)3QZ2bV>*cGI3vXHQHjGN4!cY#a@gQ#%HboQ;R=%<*#W}~WHHD&?1UWVAv4X* zcm%m%vvZC9QGvru=Oiw0gPC8rzrbPOF7P`p#S;!=4igTC97bFyaELJfeHNA(*sQ^2 zk4uP&m}?W8xke@oTO7v3V$+W8!MrpfmSD(X%o;A=35;6u(c zlZzI+11<|=4zr{qWX?a6fa3)mIGo%qA%<;>$2M!c=ahmXhnXRNI9%Y6sZY?DQ(Wsg6RTJNiaBW{1Lvq+gnog+i#8mFv|A}>^m02p*>tQ0u)AzMu^`nFqs4k9Jvfz z!TVv(vPpDO!cP#JgOeIm;Ni)MHa`G9T6{M&PxuIJg2s5>o>PO}Ubic^bdDM{TG>&$ z(ly}p2d;AK6l(=Sa&=$n>b;t3$gTY}`RbHHh=G+_@r)RQt}Ywz7r z=CeTwrP2bowB4>O!)%X4KOBk~*AaCby0!<*jF=(Do>(jwDrTXOH?{^3kx?>H#X$M3 zf>C~0&Q~xhZdwJP$16bY>PnX~ixb=~V@FDBH%;!GWkRPk?%4jq@MyI9& zKiuY2UH`~-93%!#JhVL`4&5LJ|MW62DnLIuBoTIV&=n!a!9d48p9QJOdauLs_KPYc z=r&K|cGa2&%eG7j7yQgv_Khjsg(22c=TsnO~M_a-R!`qn;U#F-iK1T1pzgC zst!zCm7n*h>1Dm!13P!1$57j~y3tbhbOl(gF1Kh#A(~8klBRU=-p7D^$uoNpVi^=KyMn$)G%x*>U_PX*NmCiJGEzp z*}9Su3b6>E>nK3)MLeaqXfl&l#WBh}{8%@uj+vF2WQO5J0NHKGyS;ktIaGidTS)i- z-enu(;BOa}mj1^_gqB+MRQ1h0oz>yb*7@`KbZ+|3>0y@mFU%>aX(DrUVhK(;Ko;!< zAm>bmJ|ctVgNxUh3+hd}W3*>V$7rbSCp9%49VTDapY*iFw}|3ey$<&{sJXk@i$H*) z(axD0VYY>rn>7XY|Cd>%k-+yI(M7hyUFWXDjI-L_0W) zMsO;{$=b*#k%wp)A9*4et&G-^wE&78jKOE8pxRzM&6R~sfxe|kk}xof6=C|YY?Mp6 z`On0TM!6xZidhhfaL}y=As%OsKi_=9;}7IH#Fib>SDtD5mt-Zx#HEMmMSn2JI-@xB zOdrmcR&p6mhA=w+iD$FAxg~6Em84<`d^mpTYQ_Cz#rA?YBH44#wZZ)P${-PZBmQaO z!8$C=hUvR59K{dT!|c(F7~s-__4)JDgLMlGr4udKtL?b6Qx?WT`WaDHUcx%STb zJwUlX{BTd8SwzvsyyO0{)_jmaCw~2jGrygU4no_DHtyAZ58u0g1p=K9Pm|`SytFZ) z$b=C_u2J6KF9-uWB$0#17!LcZoIh!zeTsGJt2iG9-|NsGV~bfg=O4$X zZE34WANA(ZQsVHb6H>yLu^fv)F;|Ku5o&$akE3kSldnJaU>abPo}u+a*b=s>hschw zrGb>aVP3CUo^9kwq-Hs3C7&5aL>0;LQ>p=5@KRYQ3WXFZ?Fy{y7<KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4z^$DoHs>ivZh8u>yRX_OSh<{fhmS9a8co zDYB+@g&-2i!*jlK_>unj>!m;cy>`Jq`b$Q$ql~y2%}7ESaS7|27vmw3g}$^4@8XZ5 z@mq0R)b%`KI3-TRP+UMNtIe3Fq`9AvhzsQd zNMj)BE3jQ`Z*?AYTP=XTY<%oLS6QtBeK7zz={>A~)dzfn^-# zX;$Wa_hh&x!y=Q2XM~~A0>PrJ#4rh^M8zD6xdcTdQsFc!^sRmFLq?3sn1sj-@EoGe zZNj7hAsM19%axquyO!_(C&)SsViF9-&~BtyWeHaa^^uQ*0bvm9;^TfFRwhewSPl62 z0RUmZeMgX#4+%1?8JCZesX$*;7CB=iAW~v+gaBKKrV4pmL1&Cbh#=7c3bDcxKE~s> zpw&-^Ar-+P0)Pqj$D?bumS#B-6b}YrBpW2JfNoOp3~>gP5mF&*H$ir4R1lG~$>@z- znpI1%qJTcbDxON}&S+}R28!?7TR9x;TCKI z2_eyVzZJSxoh{=o>6$G{)scH3jBAtf;!e&2o8b7Axm>X{{zYFOjXpJ9&oUBB%&tV$ z7@Q-b`1#f1g$p5xoRepZ-QRVY`}@Gj4aacG)VlG_vIEcE%GzmfJJkfoOmNC!nws6} zWSE6mI`Ef;jva^uPaQ5@!-tX8KBvss@ND1Ogb@NJwVg*W%e90JwZ^I7)z{u$ zjWbD94TAPDW#*l5DQmr+`+RDOHzQte7QEgVuXkR&of+|VX2IJTk<<7&OvaA2+p=>W7*L+3XJ^BEL!MwD zDCqYbV^*GiZH?R8r;jXiQdxha#~fShFVy;mQ!;DE2$c;dhVzn$vUQS8=LKMmKP7++ zbd{>twmBnk$bt;2Jc3GYJ?wz68Nn&^x95=cO=I2!u?ET-C(Tf{TJ8ItZWAOZLP~(z zlOu(P5Gc4Ux8r(6?&~$$XIv0O4g-=|A@x>YDTThht;wQS)Z-|QiN0D%?s30fcvjuu zuwE#2j4XEbC1VE~D}K2PN$C~T=W29y_#K)hO55Bu&C;n&b?-c>o^?NLqN;{)OGHq_ z=ILwZ5{PMGG^`CQk5~ZnnYoR<)yrl~@?3!Q+|^4UxP=wp&{&(2+NGF=)UTZi1|_&s zR;_XZDtD#4=^!ln(zI{GUO@*GE?&kg_fx8rQP*$v0^G+^)c1=g-~IEKdH&Xmh}k3! z)@6Ie0=aDDz4O4|3|d>>!)~;B-+vHwI$h5rt<7Mo6Gh%;8+87vwTC-gRc5n\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_093/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_093/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..72512f4e2bc94d6df212201cc4510f5baa07a98f GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=xkrrJgrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`j{EK1)b?be?$LL|4Q$I6m}_DiBlySdw6#D?!9L(E*58j@0b7ipHG*Pzvwf^^iDm* znNEQGfuW7Bow`lF?}yIZNB zI9j{xIt)z93{JU;uX!F!j-%DR(9r|p=sMtY!{hMLQ}jn6Cy3d+kj)pA+;&;qD(4Ga z{=s&Bs}vKnvFXE1!u5vyq}FJ}(Jj7jIy~fa1bLKevMjY*YO~U+)N9>1`pR;3&EiAH zoR%N)f$i~}v|G!PHlG&?rTk_BlkwLLga6%jquo_%-6r6`50UO#t{+G5JdtE&x7|{@ zZD4WR96GL#jL?I8-`%g))n={LQ#;+-p0poFH(}I9Sy(-pB}-q|;%GUa%jHNz_o>c3~K=6@i@0k6NEUa3SpDOK+I?prkNEQYQtW_nY4GF)K_$A&P&2i)C?aqs8 z9KE+#Qb459uFn>|N;^L!c{{&^^H4OzJ$6)i*@3w$6YbQ}9H`kF&y-M^o`lj!(6_sGuZVLoF~|xxh*{`@!$n zmI6-_%HO5S(mj(lnCvkL(KSkKVp3{&Lb1VMgbf;YY!2q732X6&3`VqJvm^Gx(2$wm zx4jg5eVgJTgFT9ap_bw)V?SkW82^B2!*eJJJYK+Olq+N8=~LS8jwxo>wy1m zf*7vQpo?~yh1y<$;sP6vX^h=|ioXd`=!8r(n_>;q_4_sh$JEWh(y9H}Wcpc5eGaV@ z8Wc`-8fiK)QhdrV)0x#Gd%$F2%wU>yP1EPwB;YWG1B>am3mV0y!D5p(P8cIkWH5E) z4u>iBsrf`3GbXg(^+KFBus2Qd6nlg7#@}J*eYl+~fARS_09kpGV%IV#_RV41@H9V2 z8$LQtF`jrS4s41I?_`)YOdKrsumM7SuxLR#95h*IvlC#`Vuzu*z!BP58>4x9E)8~j z-EOU=Fw&sjN*<**yDB{WL95)mAYDO_yz^Y@D!ocWt+k%V(I*!Sd;}WS2xsaTY?Ye& z98^!DZI(;99O#3)FDftL8C+GXlH6%jKqTCnOMxuNw>wk;bYzf=pB)~+^PfEM?8Bok z|2Dv1CLQEq3LP0xC<$kk2ui61wB+4xtp?G);$45pCt8PBkZ+p~C^HP|89BUI6iT`v z=3+7XFhH!AO8{e2N2PXJIJNEDM1g z`*5~Mxu*0wG;hBvLxSFCW!!F~BEw}{CV~roW-9x=Dd;UbD{K|#QhT)l=Isv2(#PL@ zmkLY^VN4Dr93Exh_b@tJ^@gh`e1ULTf=}{o&$8sdb;jK>%`E&cpEo zuJa1B3TVRVqwySc|68!4_h<=7EeXW=>Z}3^AOhcgrl?X=1v%Yo5Y0c+(H}5131@_M zvjem4uCv9s0i|*e7S!xD6j0)g+Or;Uy{vS5;OAo)Q5)?_Rc%RoiUg`wskKN(A(?OG z<|mMDucb(^s-!0FT@?aYbsIqAFQXvvaGB>ps*ti7xCS>!d_pvGK;%fhgWHv-RX9A5lg2V} z47U^^U#%z=b=K`%xM#W9b;TpiM?7rTfv27DXiARKc-C9y$6CVhs$p6kGcU8A8HN)9 zWVc@1?Nuw!paS&J(711aU2ik9%^u z7ZF^kR^c26HTPNaM!?g8(axn4VR8#EH!Bj{{~sllhCSD{cv~|q<~Vl;BF>KMv%~7@ z>{hLR4Y#NY_ubE2Fy8b|gAqKH!f18m;=s|!GOl<e7;d2ARdTOX|S1(E9uZ)Mm!e0!;;q8|B*>`1^croyk`-^9dO; zAu}5`ZL&pVJaWdz8TjWJnPgz#yLQIK9I1wLt7F%6h>hzVCpN}Fg)+%!c3>80D$P)J zJYI*<^>Y%NnKdAm{q_}4R>IG)8ff?=+pH^Ob~cw+(HJ=a<^nuk}K)DPQrLe8ubV z6;r7wgsZ@D&xZ|X-E<5z-SIVNh}LtP1qcP2EVLb* z_7w{o8>|QNcsR%%fun=9Z(n`!?W>gdd2xb=qr~cdLhAm}X6Et`adrP_BLj0u$P7?B zkC=gwN0&n8uMR0(9a6YXNa5;`;?*I=>x2}q4q3Q5Wa0k^N$TTz)j&M_O4UGIy(#Hm zsTzK9$m>_bFAjPAYWUfZ3l$i+KevsMFH88ZiE+Mqamyk*RpRgbk8E4_4}<%gnOSA+ zX%+JFsQkbSl~hIt+-*3sGjK4t3DfgNGFHL>M3YKQ&)V=43Hs1Fa46YBG13K uwW1GHH6SMV{8OR|>hngC6FDIUk#!qnCp=^{M@K|-asLBu&q~BF5XKb+W%VIKPc77@ z>Y}K4^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFuBw(>=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>brRir@L=sc$f^-mcMgF1!k_UFK@5sICj+^lT>iC_W=L^ D9kH7z literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_094/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_094/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5c9287a2b83108b0b3db78277a0fc158aea26401 GIT binary patch literal 1293 zcmV+o1@ihIiwFpU%z9-4|6guzWMwXJYixQhbZu||rB&UF97PcKOfL78OD-QIB0enV z%N@ko*}ctfP7w)6BpAFKH2?%SE}vAbvYE)r0XV4&Y@AM}s$-T%t!nb{8y zgac<`XS%Dq>Q`02s`}~b?|kdM`f(pgQJ$9&m7;`PNQgj=!%M0ZjCWU0@a=!|hd=u_ z{=lshNel39i)K=gQY+@&HsJy^)r_Be_rc@2fLN|oHRhx-;N2A>QtxgoZbmd7KJ;!g zp$14Qw0CQfch{JbnHbmBHgYvaFwNq|OzBCMs~O2*3OPc1dh+C3?{+FHa&uwxrjQnN zMj2c@jVg&%BojG8TF+>1@Vy&$5dtu)GOl}zSHT?9)bO+_%Es@H|81@-sV)ss zB}g()3#MX+<0Vpn$O%~8@7u1%yvbjh|LfHf)+Pd<1JjTqFd4<`)k7o#oBJTSd3N-~1xUvYJ zfE7a@wkIknfq^kppA*E^plMCsv$)BrP6;|XAt|-g;KxFK7gysP0-u1U1OetWSxEQl zScY^G3?2$mQcm*M-rX@)l|)I5j5e0k=a$GWNHyq6E~U3C6S9_5D-eB2Enji!{`_hs zCsNHMnSwSU<;(caw7|3@%cmfzWGhs=RZ@*5gzQ8%g`h11ai>&yPD~y$mR6e9G;(Ww zB+S_~OVIN(GNS@Le7_e57KO|$jW=2Q zddPZH6-CGpEz3IZbB*f_N8TX$>$;j!EU1lMKRzB}85lH47WL-ce%nzNTP6x6D(rbQ z(?NA`dGkpnS?%DWw_Iyk%D;EF=F+EO>v;)mdF*=D%80SZ!M{?-I+(iyrVzYLA9OUB zDz_%Y_Cd!~$tlwEK_}2EY#n~O-N8o`p(2Agv?63?z1yDtyt9vApZxe{KWaF2&gvCdrQPLX@(^1TNFoMw_J02y2 zM=(hITm12y7x\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_094/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_094/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..52dd3d7ad1be88e4f4f06b377ed220be2ffa20aa GIT binary patch literal 2544 zcmVb!>EBVP77}R8F=De_v?g|z?unzo z!{R#^55T*==%XkkW)NcE44n|Wj*p308~BbHMuBC2l0+qK-DuUCAo((k`vs{a zm!P94IFUn;Fo3CUHF}C}?5g@Rv)wZ~JtIpm9pE>Tm!&s!5Y~FeGgEKxJkQc^L|9od zAvh8%8`5TFLp;Psk>d|VLKC#It7|X84kQ|sB5{_T0deyr!tcbPYFGE0?Yg?FDqS5M zeByZ9PCuc6)fN4@(e9Y@JcA#3U=W~ESB*9#{6=nr z1-;6IU(mdrEa7}AHpMNz*Lc-|u`3gFFGkx*eyJQg@4wjfuGCCYEM_X=aRDgArn_L-OTG! z&-VX)d1)yk+fvnbwx!}$sa$pa98{{_Xj_u1p|f3aZ0ZZPu;_ZK({y#;>9rFg<&%wfXeh{K2r1r8DBf55`BLWecD z>~RUP5OZzfFxSY0VVlF4*lgOdGnkhq#1alUj9J6ud%RO!LvDQE3l})-dkhab95Nga z(E?97{VA`**$2!Tq0gKk<5T#U`N}DU)|APEF~fXpr=pfQr9*}%nDZ4HEa-p>)CTu38xD@CE?(t@kjXbZf#1{@4h_&z$gzFIB;!-BWJj1geZy^jR?P6U@{38IQAH} z!^2_0c1V0$!cUM`gVP#R;N!`uHa`G9T6{M&Px%OKg2s5>o>POJUbm~X42~K!TKQ3W zxog7d4_xKe8P*Dfp%lNm7vT|+VVfc50uW_d%BfFIm^ zS$hR%aNVq{dPl1PNw_kn0tKLNHy8ux=s*|m9=w6`pB{ML!Q1bDKOo=d0(zK&U=0{b z?z2e=rP>0w^qsDvz-*7jAR3A}*AWdId5#avj93xIzF4Zr8b*cI5b$o7h0Ft~cAS%|^3hc4`Lj z!!1tL3yvMvMPleCL&qoL&?TK|sx( zW&jh{lovf}dfDjqz|I}$F|~HBZno52Lj_iAC@q>%Nah7;ego3@7gXsK1tRNvgwSsngtoj;#XA58xTdYC2t3v)(lS;!ilT7okUkVSg| z$Ok4vACbZG!Nu#`1@$J~G5T}0V>Yz*)0&ozj?%B{PkZ{}TSRfKUWa=e)ZE?tMIc1+ zX#3oaFyF$<&6*1P|Es*xNEigJ=po1Du5&kF#@Tg!c3EAWZPmtW*rF!vyZ^Ibq7xp) zBRG|kbafPv*he&sk312KE{|5z)ewpujKOC|)*L^X7AnHJK;Kd%Nf=nA4PpAIVpht9 z`On0OM};A*iX{srIOtZw2#@o}pKm|m@dxr8VcUu5E6+6hOL{rN#G{Ak#b7YVJL4qs ztpLuJR(b_ahA95%6OSxxu9xIT@Eut>dFg5;{q(Zqhe=HG=br0>`SX=YV)#b<)5e1} zSeW}(;CXNqKU|CQM>ArAOApuP&rc86Y!o9ZdQiQ(27iu6KLfOzK1RX$kxS>=+iUj# z75?z!J%MHs#rNkO4^Fh^g9JM9n@^ni?QC=yIevWqUOn*fy$4qz(E0EzZGOs28xx95 z7-Qs_mAyS#7&sA$T|CBc*k9xP$x{7OtW#gb`7roiN6r}A%(_Wm??g5Qd?8onVZv%l z^kr`KBw9)wK6OG$_;QwG6Da15QdxvrUkQ>pU-a~wk3E=%*rI1>{Rp;%V;K>0Vr=Um zWp9`_YPRo~MG|XyPFm^brWsR3a`KdF!WO(#5lVubL8V=Vl^tUr`4*;?C;S&A^U;>M G6#xKy(dGsK literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_0x22dcd2ff2021e1007fe03333f333bcbd.json b/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_0x22dcd2ff2021e1007fe03333f333bcbd.json new file mode 100644 index 00000000..3b07aebe --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_0x22dcd2ff2021e1007fe03333f333bcbd.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "094" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..83fee9e97358538b40f78a1f7747b0b00c40d126 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zXT46l{pv4hjr?VW6kJ~W1ac-a$`HvIW~jmh316rC cl;b%ju<{EL1mUMR@!Q6`1s9}3SNI4304I?m1ONa4 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4cb0111e91c0a5de6d5c753f243d6e285ad302e4 GIT binary patch literal 1535 zcmVU~bA==l$;*4sy*y+Nf4=m`Ki4kUM}Nv_ewY(Cr#VR}BQ9YB^I|+AvecJ$;9dS+ zwtgv(%BG%23}>X&tDzuR5hNAOijC(hbY1dOZb?K z--6a4C5BW4M+g9>IGBvC*;<;E(k%J3zWaj0vcp~&5r$cKjB3|&EMPMMJAqB6 zXwyR6%z2t3nVJ=g3V|(+^qdcbIT*zOWPX75F@+32>Uf4lX62^AD=&p!&N!oHA?l5@ z01$$dM91Jspp7Y*ATJ8SLSXz{2UstQEHf*F^W3ic*yDV~ks~0#-B%+F8)~8Bdk;2Y z8%PL=Ci|__jrwevbV=82QK}BzePLXiloz)P7TN?Sr_AM=rO8kF`grt->3W)zaB6lX zuE*dU5#^6B7cX3hNbHNCfua+Hn?$*{$XUnN4IA(%V4b#l* zRwu_S!qS1CJaX(nEO_Q{=^8$at@b!&#)jv6)+UM(Fsb7_gjud7Y$!)f7;TP0Y&Z=7 zcJI|u+ho$Nz7ddqc<=ki&&=$5UI)Rc#gufF95vjE*wb|Ck5&slN&c|$Ts2y!g4bWW zyA94HQ4I(>z?7MH%B5`d`|h)2Q~Vk6`m^BmCwTqy;_c3ew>t~o?gVf5ym)&v;_c0X zw>QDt`)|DCIcB5+yagDy&3VF3tCvvvB&GAEVwH-5~qwfqk2*7!pL z$U#@BW@C#p0*5TfpxPs-WbZ)_gv}UEslPsltZy6hHi$J));MiP((^j^yS+9@P=u5K zwI|044hK#hE0ngmW15vyo9ga)Qa$T_*hX~?;g*P? zi0#wY%q0-h!f03A9nqKyV8yzM-*pOlntR8dAS@Dj1aD zN>#Pm38>ta>ZXIR7)aB;4SNOcQ@D5;vm(f-Qbt|B(F<@N%g`VwAAj@rpXT{XFCu1> zG+3AI6$|9Dk@t@8M`7g0vG4gE((%0eG4Zo{TH(_I|}L#002Lw;|Tx& literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_report/report.rst new file mode 100644 index 00000000..4c1327ba --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_094/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a065 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 094 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 094 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012521 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_094/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_094/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_094/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cb661a83a389053ae9a523badc2e41f558f26b14 GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=3Q5IDtrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`jOFGlLAcb8@mg7{3#vY#Cy?gK3i;Kls;2(?s`uC>`$zSxDV|u3^ z;!Gz%eqYlO=6V`N91cCt^@BLNE1i#Y5Du*%{vlrbXZ$i=jh59B^0DbUaqZ#4%-yZj zPaLgWb{z($Wd^6**w;J{Cdbk8Ug+onaq>ePE%~7nm^O-s3(<{7FfgRi-qy!P93AjO z*GBxYh5Ep*$2*$uVb%4Jqk5)?EYm@lFZUf&^?X-XgQ4$+gP}TQ!mBv!9V0zZO+(FX ziM;M3EkG)Un4x6?86)(ygiP(L?|=Gn{gZqDjh2vOD1=k=Mv zn&k%c{N4+C*<3*=z(AfeeG_Y3A41)$b*r+nC&`c1R#$0vl{mU_hz@dg9Nm$jv)ol4 zt8#1iNgRF3!{y~ejC{VhncFIE@+aujH=O~GNrIO4fL;?2<qQU&_gH zSFUz0C1vqdE^gIjHK|KE-v7_dg#{n)Yc=C+tG;c#aL20Mk^wpb|X8VM1MlcrE|0f+?P zAh8rnXp&49N?&k+<|jB$@Zc=Pny)kXnA&L6#u{oApNR|}GT5d@fkh_=69%8T6mQc0 zGt;9uMFxcoVasPQ3#n@+;u++EMrRtmGl9X>W*!U7WXcQmQtW$nijSETj~R>@j2Y}R zSYws~PZG-CrOVPilQx*_F$vK%N^NXXYIsbs!C-_98g^v%XQc^i@dgY=v|+O&_T12b zncuU$6nj0J;sJv_ii3fc;t69vVQm=yfN8^XC<#28!)KH$W8~=*+V74iX4f{iYJo92 zp?HiKuF#;1cA16Ro=CCChGQBdx0m8?f)qL-6V0Yr!*u<=&A<_L)3Sr{>xCSB9?*)|C{Okv+*`fX98*fdyd(#8p6c*m<|Na-}amKL;QyPg3k!2F1QPNE@E! z2Wi7c$0^2RFU5gPvEiKzvWAI+`5rbvsQ2eBNQZ;Qb8U74Y+CFvH0L-%8*3vpYtN*? zZnx8^HWfx1)SAho^kzqer$1 zRiAtzrLw`Nix3-av_RRC=n)$&_{T6|E8t+-*z;rM_u)Qq&CntiT0OR-+2guICP@q{B z0y*~KbdhpZ>9%R!epiA7z0b6byGVrAoXGma#fwtyJcEM(2959{;7`sfT>A1 zBeWWAn00rREygt{m3y$DMz^kj60cXEc8TjnrPBpJAH#@RZK-y&U&|CW*D{CCkN%WNswi>w z{-r8PP6m&G9I1D3yY!?2hX-=f zSR{_&mLlXUWu>f6yPXU7EH}Nbc&Pb^hwVD>v=bgp$WacAQ?B{#T4p zPwWnJp;y;6eK>asE)c+JI|cX^!L%#-;PS!2>(T-BF1cgmCsJFj)mx9s^>}z1eN=hW zmD9b5;But`=Qyaj&yqI+o)!#uE}aOITX?Zimf-&XD5*5;xvs_AnrSh|xjPVXdR(6# zR+p!@YVB*dMOC=(e&&Mlrgs_);i(ix%R?6jjz*So#Vdm0&Eayi>_M@EGuU>7y6J?I zY?0gG$h(wWj_d1%O>Xj_s20WS>}PBS!|VXAiY{;kc+f3*J{l!&fIfeNH$aeQ9~q`k zUiD1k@1vVO!Zvw`zU}t=$zTxrj_$&F|QgPtN`)A7w3kK?E=HD)Qe8p?>6|cirO!|7bmPd5E~Wf3%i?xg=x; zsGUd5K**y@A@f&<6s`^_TqmS(b;!ciAq&?DS-3i+cy&ne{|HIy<9gLVJp4-4KwP~k z>0hZDesRd_SHmw3dHrhm*^qM;7`Q*Tjgc=)_^*j^zH)KPB0E*$@BEK!TlWux`|Fu$ zW$kGeM(dd&?3c)&w&ttpO$j8%za|0CH=SU0rQ$jWHd)XqGmjv5a$6$#sx_lSPR?)e z`HYzJ1KMjUrdzgcwBDZIGStkkK3+5z)o{53H*d%efo?0Esz~$p8QV literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_095/create_stimuli/_0x17cd4e6d0f884c5d89823ded883720b8.json b/Afni_proc_through_nipype/_subject_id_095/create_stimuli/_0x17cd4e6d0f884c5d89823ded883720b8.json new file mode 100644 index 00000000..9b003529 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_095/create_stimuli/_0x17cd4e6d0f884c5d89823ded883720b8.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "095" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_095/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_095/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4fd070391356f298284fa8e93fd36084e17826d9 GIT binary patch literal 590 zcmV-U0sUeVk*s-28g+ z`{wLfcQ&oPeO)#rmza`FNZx+?sX_%RLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zuYfvl_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iYn#JZA}a}U11&1M!Q0!d3j=MWS9T~Q&dH1#fTl|+WVk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^O}Jkj#-CxQRmLv}$T14$nR$ zj&r+%SJ8YHq^i-(T5sO2HwW>4I8}$V%Nli3qtpctL%P){b%3hXNTAeuB2dWm0Wus$ zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinuaGM&8OkXNb_lU6nSR? zC4Fp-slQbu-gU|0^#01yo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`L79V^f!pHhHv zOr&j1DM4zFbsj{S=Ll^sg5 zoutT`&J}`4BoEK|&f!P;{A8AXEHN$Ze}iff(LAn$6biT0AUr4Yx_bDgGlU?2u2Vg$frBo zKV)Vl)htq{I$%QWg4X zoD_NAI~lIdsZ10R32-uAAY7D{5GRosbSSWxOISoun#M_HZtsacX2h8a!6$Y=q!?}P z0ZtkMB!uxK)oPmWY9u@wk=&sdf;XH%yBSlRL_$ZbPx{mw0>@Yv9}fn&GD(!;YT(Cr z2#6x?yAonC0%BP+DIbGlfj%oOQqI8xrKmh4h^;_VhP_H>E{F1jouqrAcl#MRsabf=u~z^k%B; zszp>YM4wO{9!u)(cxuXrTGrJJw##ulJ z{RsSH@D$R<7EHp+6u5_spKBuPRT{^3g=muG>pu24UvT6I$)E455ycI)&}=mxZs0ah z7?Mo(TV^Wd*)r);uHB+cAG-U}y0$4VZl~PK6P%nfmrIt0Kbafj(WkcSSpweF>`G9M z;W;9+A73qAxZp$JoIG3d{asaQe-Ami?pRLQTGzf>cJR4ZT06}xr<~x}2~IK0V!KrL-)ToN1)iH>5r-H!l zzdowlOzOoqLDCQJfB)pUoqfO2BzS6Ztz4}}6}KSvG@bIJR>Mz79#vlGO6^qe@@sdu zBDexw!Jq@mxP3=LsYm3Z`i71V^n)GdSYPI7YT>O#QZS>I5 zZsqmS7q5>dz{li7553%KEeEyMTX)_avaZ&8H3#R~kPbo{M|3b`@12m%vqQGd4%wO| zWb5pZ?XyF+X9?LpJ7nkVke&Y#((+?AHdqfIi4E4(c|m_9Hhgf%+1c>HA!ld9dqbXJ zAS&qh9AmjW{W3RhZk;}|>`9gT8$b5gT6>|_)}4Y`+g7NoJ0YHzAdA*XHk}thZu~I; zB&e%&wX!8R;311LsPu>`x$zJM_u?2%X1+d$tgl=1I*K(^)-1GDY+;8X5m?R zgQI4l&@n38F_)|zYOL_(4kl$*$Ux}v)!|oc7AW)Pj%^lB^Hg`wlj>Rb!#XKzh_^(7 zMXaB`W-g(amR7^&fz=`Ra6Y%UvA1T~jwz8!l%6|g2?e*z#Wyxqk4f!9Ok?WTPX)sg zTq&wnIzg4YQrvV1l>=qlcW|$eeTEk=YnJw7rnObqZ_NVU$6_+*XHUNQ`w#p4X%-33 zleAcu^D7q0Wh?KU=BDR&V8d?&-EPNw;CCN(TWufwZnwSJYV^CPz;k=N!\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_095/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_095/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7a209bfb629f96db217d632cd3898639fd3cd5eb GIT binary patch literal 2846 zcmV+(3*q!1iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj@;H#Dgq=(Q5IDtrbURxm|rG9TaKi`fWVT3gfC+Ol2YPM z+oyI0Z$aPs8~T^}+<(!#Acb8@R^n8N#vY#Cy?gK3i;Kls;4h2+{P*Vz$zSw^V|u3^ z;!Gz%eqYlO=6V`N91cCt^@BLNE1i#Y5Du*%{ytv&Yy3K1jh59B^0DbUaqZE<%-yZj zPaLgWb{z($Wd^6**w;J{Cdbk8Ug+onaq@i}E%~7nm^O-s3(<|oFfgRi-qpuO93AjO z*GBxYh5Ep*$2*$uVb%4Jqk5)?EYm@luk;;L^?X-XgQ4$+gP}TQ!mBv!9V0zZO+(FX zZScB}v;e6XVuqFpWQ@?)5;C=~|NdX^)!*(PL`%pq6v8R`t&kH6*}Ra=7nR&rxv){r zZ*ciiUf3$c#B5~xFq3e-AwLo8^*Fl4_e_U}d=4RxvM9?^tEo0B%}Pz|#L?H5t7{e? zI_9MOh!1R!=cHXROWJ&1C~oH06PS#@X&C(Pw(6~pB6b>p13yH%Yq@?Lz4t_tmEBfT z>9l~wZFAtbJ~BcN@_l!|T2mWhv#Yi{;-0i0M>k>AMp;-rnI%i#h;g)-&*gHYrzI=R zN&|X+?FGGTt{@a(AkUe;i8Zbdq3+eXqO9ym@)NbyRoY!8j&2;HgPa{lcVy_Sbd@Kn z+}eE_N1yX>dHE0{pD%6Zwo04)2|D#nXTW2Uprt*z{sR0!qQS`Lr`hRaD@h{!j!j~A zd%w}DN_&#nk%8bN)7~+AAz4^el%FcCwmQo*@JJR03lyu8(t?EFN&FITj^?;=^ltk_ zHI6=*FDW2WZ`G!YUZ$NNlf0c@!dWO9;vPGyyllhVrLlHuX%5uvjb}<-dJHL?F3aqd ziu|h}Ti^<$0h8sIvLZIBs<WVtJg zol8kse3Oe?by-d7QjYikb8}(A$2+;QVeaJe+l6A;auQG~+ryn)uI!mR#oTtGP{wZ3 zzfm^MLC=^DZRhf3ox!f3;5@ z+`%BlJ~ba}BgTaGyIzRX2KFW?o?x$k-uN@@yxUv3@|X9|0m#ae6uXu|v2PC2hNt;K z+VIhFit*S>abQzycqfCbVd7xEhYb+w{do)0;h^zco1Flg7CQ{hIgZfA+6c|sGik8f z?R3PZ!bpQ!GkKKW?5Obc2d#4Nf^-Ez^4@c)qjW2ERct z98^!DZ5B6kInW1pUsPVgGq|c&CAnR%fJnGClLA?gZ+EByXv-iMzc@UA=RbMi*@s78 z{i%TBPb2pAYy{wK*N4G)) z&>m2tcEiVT-+kq9pMnX2p$CZM&kAOsN2uptZoC{BJy^T2(3Ah^_zg8<~Toagcn z;W{rdtAHk)KI+dw_rC)x`hb>z)RaJ+FHb9=2qN(PXNoE{RFKo%I??=79sLnglW<08 zHQF%i?kZc1YfvipU_p&;T>&Lt7oT;B>qVv01wWs{h+1z|s%lf(QzTHeir6F>g=D^y zo1H*9-KHYJs*;+xcTw09X-*3E!G*8~hvB2cVPnac27ftDZ%qFiMyMxt zhq=(J>zY2Cy95^q;Iy3r{DxrK6@75|;NW%XfO?nQG4fNXt=8(T$CY|KJdHl7KJLot zUPN%ET7`2Q)Z7=z8v#!XhC7!|gvl+u*r-Tw|9_HH8unb*;%&{enB&|Xh&Vm2PYCh*ufcWJ3`%b!b!Ho zZE)mWN-oFs^};4Md00|Q#q8{7YzD*Z0IrHIa0PhKEqOi~C2xT4zr`CM$g__O(&om?PD2ZguRM4zY2)|FQLq9*2b$@SU(3aK<>-i0m?^?F`3l$JE2Mmdx8+;7Cf~w! z_!d&Wg}3Efye8k`b@&!jzQrHrdp?JZObJ(k!)6(OL%Pl8_mo zb{;VUA&)MF%wHW+xH_b8osh!SAq!WBELj|*RO^j4LMhVf%{|I82Pe<|Cku(s~5K{vQs7g&i}}^_24jgu%4M# z)}Cfzw4NEleu?~PYrdM^mOx_sa}w};(+O5rs;+}zlLehJ^9XV$x3xjOYR%}7lk;1A zJ|pHldE=2B^9>AYZnIG2LF_HLVUVbv=<};S8+u45hsf$FXhKt0e9a7yAww_ylD8z! wzPB}_k5n}vCiwhQq6+HsMu{tMLJT77HpotR$Y_p^i0I<}2kya_YPlQ$0E^+7O#lD@ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_096/afni_proc/_0x117cf771f80206fefd91d4112830f527.json b/Afni_proc_through_nipype/_subject_id_096/afni_proc/_0x117cf771f80206fefd91d4112830f527.json new file mode 100644 index 00000000..3ae1e4b2 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_096/afni_proc/_0x117cf771f80206fefd91d4112830f527.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "096" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_096/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_096/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..801323e91bc29554fe37b0fafe29f3d2b13dbf1d GIT binary patch literal 306 zcmV-20nPp&iwFpS%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{$WMMn^#Z5UPMB+nQE5&BT4rn3qC-O@pXJ6AHsIc(mi%g!#DHI@0+jV@883NZEa#6 z&f88ko@+&%w=w)MXp!wy-e@VQVkNTRI^i8*+?L37%M~=fM2vbmNX7jO^~I&p)(>N2 zbpy_A)wKPHvc9|c++ok)KBcN@!<&$B13AS-4uoFsb;&-g=2 zz$*bg)i1H4);OXKC}Ow)!4-PZw E0EnWN%>V!Z literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_096/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_096/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3c6a0dcaf73c601760a3d2c3b2196c26fc79d571 GIT binary patch literal 1293 zcmV+o1@ihIiwFpS%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv}wMYHvLeG5D%yD zl1O3i_Hw;TK?qesMHMAH6!igAS>D~*vvXd1vAuUmQ6+e(sN^@y1NTh`{2o3KrGX$8Z*)u@a`JnnRmAqHzV5XKk{xf zp$16CwRdZgcQ;Zcb3U%EZ3s0+FwNrDOzBB3)Qkw2fFqbxOb7?{6 zG=Z7 zL(jvmR+d`aUmN(!ZNWLD2uR5q^KPmEg+xP%dJu%wRWO%oYFJhkW#jk9|2Ef^RF{UR z5+s?Y1yixZ@DeG&GKF#6vb+FeX;FH2|4b$5k>rL!MuI?9Xl)InyE6eO372JM&C=gJ zp;9VHtuSSfP8QJa7SxtPS-}&M&~yS4ZC!gZ9%E)oQDHXl<2eGNi2I?2LQR1Lt}MdG zVa3pg?TJcCNWmDYF9>35(6lBWSlnb(X9OLckc?Vt@M9srkE^kOz$c&?L4blL3+Y}R z%aBfj!9yWR%87XG-92MfNtDFMXk$rzZi(!YRD-VMQhK*CA!~wKj_6Bj*@{yS=T|E^ zk!mK%6toE`U&eQ)Ii?+1J_Si-x%R29Kjq43Z-XQtwx|&ifsExSadpyK4Fldr2>dm|TwxcYzOcY9#+ly$X zgX-Y&=F>{1wS$Y^a-(G_``+D|OP__U7bT?2V>k0wMvO%c{*^)A!Q36B3c<_lsH4GD z!kQ47Go|D}?!f4GftY_EIw%@x|f%4T=DX@M4G`0`~xs@dGOyqy(1 z-o3br_JFn9Uh8Ja(J5q0?IiT>?$SgT(YJ15lR!3LUgzF=_t}*VB3H4oP|?jyuNRMw z2dMZiAyy;V&79zbAc2R`an$!!;`aDhDh&kAQz&a5y>mC4K39(@<6rp$mNUlAm;kri zcAbUH?LNtH4#mbkuY*P1MnehXPu=x!8p+10Q*_Vmkg>A!9{MXT8@%=MG%Op{wbL)J z;`D#b$S!H4iIb9GIJ+xTb_*Md4s~4HG#4_(t1?WacWyh#jH)!2->KWerlacygp0kE zcGENz^!@fFJLvt*CUmV5bUk<9{V!KSM>Z{$>S=4Dx-GN(tv7C`nI(kku?cAb&hc z1}88`{9F7n!3zA(7~nr+9RJVQ\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_096/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_096/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a285602b35c5139ac78d6b340038a692f40c01dc GIT binary patch literal 2542 zcmVb!>EBVPRAsS=wVgi)q*cr?cSdwewW-LHbYSL*RJA=2N zZ++}bU;5A=(7)0j(wCkEDeg+LQ@=zr8h(5B?Ade9p2dExeF^h zS$gxV=_DpDi4Ub&gu)O8XX)l%;@dGZ@?(~6M2R004`-9L^xPxpnDE&?v}aD1?#q+F z!}2Q^kHEX3?4u~8RuE#}3Q34v;$tc|Mn18^D6p+~5(UY4Vl6z8Et(8pVLP^nV-@dL zWpu0vemF^laz9!R{`IE%_qG52Bi+EhV={NrUnxbUTqr4pQpGIZua~R!Vo|D8Dy32> zV`@_p!AR!jIpeXa>sfk19ui-MR8Am;hH4mEw_~*%okmOTXXyhsu#qb#KAG1a%CQ&9 zlD4ZBSX(YBm0Iae4)gxEb%XuguHNmNYQGIQjuLDKZV+YZrN^3K?shw7zYAVmBx65_ zu#<$4>Z=FMmep1}1FP3p_q2m7JrBJeEwDF7lyV&pkDD?GdDK5f&L%EApGTP?pN90fUX_ zhN-rjmU^J>T0ISXI#*KeDpeLN%U`#zna{KI&YAp4UJ}E$DjY25LP-fuG6A=D<+NMF|g7HqdxLqmNZN#RCXL(bp2LLJz&^Xtu)bTtYuGGJlVie`L z#PIlNg;8V+_!ZYdT*sXtj*lt=o(S0EO0mla$8!N61svD7{D_1cuaLu`;IJDBScKfP zFyj&Ag3m5AhDVBkxz0(f2!pv_c(}q*=&kT8A;mKRV*yhEM*>DdC~$~y{{tSD9TMIU zvL__OM%=X-;jYmc$Buw8b@;SXGFp}<#1f7LjCsQod%P1}V`2Qz3s*QCdK`}h9C93w z(F)H6{kfT&Hl$#m3HrJmLK`vr$bL_65!{OZKGtFnt3Lgrd z*+R6~8wpvM3YaGyA$$3m1e~nk$Q9&X1#wIq5fk2cEhvR$0dqsac)Y?9SD&G&pu*)r zn9x;&hVvDk({Oa$_#=FIx9=D0Uw?HBfKk3);lOn`j>ve`2vHQT8WDcA!gLm{aO`pH zgs;a1htT+>M4TY8M<+Fyz{j%_ZE*m6w8U;`p70Uc6ixB6y`%=agMMG_m;yCub@HS1 zeBXl8AGpf3Q>+yT$)$a*Zw?x|rFQnS^z%~+5e8Q3Bnx5;x~6LF1MA7T&3dg^1b%S! zS>rjJ!A+~F89luLB;mr63KW38UFHm+X8>LN^5qLS|Ji}(z5MQ*-;d}wxquy}AlL$i zlKX5iLaBAYEn~N@sxaFFIf%w`&UIuHM;`HknNd5!*q6&yrDiKi$+|zfhpdW?Y8EQp zSFGy2YN>`%`L3hfg)9KMYifPQEKYE{oE>SM-7LLvmK_n_b`uBa)kp2_w^pm&vw95^ z_~Evo>IFx{b&(vp$(Z<59(!Q{{@G<QROvp?KH7v z)SMOU?@mqo;$`yi&!50Ddv2$VK%IV*gv&r zrNz3^35u``pX)e8uVp-Ew`jVM*5xV6J$zR;ua1S4g=B%@MgZAusk?(_<0({toj6E( z1K#Bu=hi+2k<&todkQtiDAIH=0ej$3e|~nZF2x zD4y(`xe?}Dc)i`wVE=!XR~ik2z?D5jT;V!*8D?Bu*B6)7&Ba!2eG6OEf_?XY7EC7L zVLX9TDM>dc0gZjc!g$9M!Q}j8Gu;fK*ufZlb`+iX$-GdN?n>+}rC5|kcDW|a?^Ug8 zrLg>&k$6%V!>ZVdREC3YBaHAgfBgCCJsy7`&k=S=#9n#k*FOlI^gQvyB&PXu&qt%>^OZ$o_(uHO!J{o$ zm|J$>d2kfp*^2Tmf5c;-0oKhPqu~6=rAzIdt($-f zfB501#IlIuTg#5y$6Cul5}WwNd(QmbVssc0KfZOd8Tk0-?TZlTa(I@u-{+-`3uP{h zG4ibH{=OoONJL{7Pca``wSEh7%^J0T-{Im>Y<6mzXyk)hT%f+WrtJ^kWc52hiu*%{hAge^gAGeRWBjsa5s zhIzT+_{1vFSkH6PNk6u%m?_fZr&J5J;JK<)mXr)C?INt~6#K}xF{?c3e|y|fthp5c E0Byhr5&!@I literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_0x95c4c5a44021b703ade418ad1eed8292.json b/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_0x95c4c5a44021b703ade418ad1eed8292.json new file mode 100644 index 00000000..39b2b32f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_0x95c4c5a44021b703ade418ad1eed8292.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "096" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..08440ad1a1a4513b2f2817d1866c7a87ac62caff GIT binary patch literal 590 zcmV-U0TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01i4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DF+BN+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zT_j0}3#gd?aid-+bx&GAWETlafcO~XMfK@a$hg|f-m=94*1|$ZMPY?Eg z%=Jd5Xe?(suTrLn2(eFQt-&Qy9ECInT+1PjCA_bgUVuP+#Ra6YS&w)^>PImNxlmmI zX$&NN1-7fr-Sz{o(P%*WrdMzUNdb5-&-5BOCO!b-%woP$W-LewegK3LnF;3$ETbSx z(jxCWXT#MQ7O6x$B@B%g2o_}{f=MVLD&kPgH7FvH3MXl8JCZesX(8X78zs2CsJZ@f&g2ArVM#YL1%{*LNZOBI0o|nHDdG$&BcwvsZh~xPR1lG|$>{Y= znpKOjqJTcdDw;~__GoIx`iu`58W17Pl27V86cm;n_QHTL%={^;T}!cm%>?WOHkqPL z3UMRlag1baRxHQ_wlva9Eg;PCAnZcs$7qNtWcW$5VOV5VZW6rklIit?Giny1+&C)$ zp&OH63Z4Yon1TuNG9%0f#xFI2^)gEmvqCsc?YfUVE*Bg*1@hZ{HNdc;R+_EG!(G@0 z5<;T!e#>>GJX^+H(luL@suOo8jBAtf>VC$2o8b7A`Ltwd^s~M;8hvWIo~6W}m|YIb zF*rv={?n_~3l{mC6ocO1hhQ|sE->kd43N^7UN=ads1Gr=i_X<~M( zlVTQN>A+taICdZuJaM>m4If5UN1QTa!_y;c6NCtu)N~%fEY}j&mxC&dR!1OqoC*ND z`}(wQGN~8e2uR<*`@@sxX7=4i6Tzv)lysFGRNR8tlXS|DS`9u)`l#|kRcbTA%df-3 z3TKk23Iy$8%FH|FQdT-0_xaS6)`ECji{NdI@wU#3x4j_V_9A%OW4!J2;`J89>n(!U z8{_r<8}De287Tno0mglEUR5az$nhhAS&vj3J067cd7LFoj{A1KT5Z~c3qLZ4jSe_E zth_$`^7ZK$_=ud~p<}JKEvW6zj`Qx2akbs4IWX6RbO72Yq5~m2?}Tj5580X@vb9La z*8Gs|`61hjglx|b>CF%6{g04_AB(ZUc=$+cFs{xE`XjO7gF`OPh7S(8I2+y@@(cq( zLBHo1v-0#SYuwzMJ+jP6W&MpFb8KzDP}@6B!K{5FRCb&Q&PyVS)>$^47l1YXm;h4H zRjOLq_B5hFApFoy@7gMjjj&AL9;+CjpC+*u;@wCz6E;)4Jll_j9J!As8U8VH~ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_report/report.rst new file mode 100644 index 00000000..bfd03f6a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_096/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a025 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 096 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 096 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012373 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_096/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_096/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_096/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a1b4fbb192baf9a289db65d0ac7d5599fc606f12 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}DYT1&VIChe0CuuSnj?&grDgq=xkv3f=rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`!h567xZ7BA+ON~=mYc}`UJfTQrM+rB~F!S?BUtnyZ4^GxLBM8{w7HXF37$2bzvB*Vi!OaOioiAH>le>1?EnaA*bb_wmNx<5%%|w5pDgk4@K!>yMV^ z?rx@j;%M!n>o71aGdSTUzUFx_IgVC$Lq`vYlkekb#Sfjpv{5`-impF~ff0>%O`jNX zw9k)R8}UaL8UVXK?`XbX{z0Ob21UGH^`Q^IcsHM!p*kN9v3Tui~(Og!Di) z4K??m$m>4R0;FPy8CoWgF+yKU$kf05?!~qL{`+6wM=QuN6v8R`y^s^cY+lIb3rg-m zS==h;3!Jc3Dv9}+n2k*zW)iN~WZNQtLJW2Y!fj*K++hdi#ka zD?9C$(rp8aTjtPlePo0lA?Mk(-3+auQH1+oSDVuI!oHh1^3? zEMqt6-zpntpl{5E9_I38ox!f3;5@?NTc|)z~B*sZE6%)baF6d@Tp62 ziT0nG9>pm#C}ap*K7(0ET{96+Ar~|{)99ZH45l`VSYReoUZ|g9-?LME#H4t_V8md| zV4uMnvlMueQ2s7mmhPFf!DNp~h^|p;6O&TI6N(K6BW%#HV{)R9$8SGIU47C(b8T%<~!}teG8=gZ+;PC=JrCb>!PoL6$cT6$6wuMy- zjL|X06U1T_tN(4cUt(@4{ak>V4Ena->h*#jmEV+PZtYnndaCIN>j99T@hUC<~t4HlcUam*Nb zB7>tO0g#o)DRwP`V&5F5 z4NvofwBe(p6yu4P;=rcZ@Q#OB!^FX24;vuV2a6V@!$FgUHah_}Ep`~13ml=1wK1Bv z=h9%O*X`C?3L_2bt>jU9qpQNxAGFHdbJ7(A$=lDRuF|VC)LQF#9DRJwz(=5Ajc}%p z!B(lM&q4Jh+Ge?w%Yi<)^P=(+p21bMD#@Kj1w_KlxfIBPe7j8*Kt~3-`02quJpai9 z&ptT(;x7aIMbbeYrqGcAg_3YqiJ+8PKug}~)@l&#OWyT|e4=%D1^Kq=fHK3No{__g zMWLh%LSB6^xUZ=NT`Q?t{(+zt?-%nWq={RGumxEFaaWbPL|H6oyF?vHt(`df=%P9@ z9o-5IkXP?C+h3{mW=HK*6wrqc8B^OmH7!fyJu4iV4(5lpmxcf2L@*Ly9G~C-*;yD0 zG|NID$3B=XQm!ez4$a$d%8;Pln-=+f7LKu?+35Q3SKPJZE50MeouQkXjOm^VL}e6hH*N^Gs2trV4Vp*C3jIrla3y zY7))}?PdpN-C1XgaRW-_E-a|oYbc<^8?|RW;(A%>_Q20aFrqfvm8#m3b`=R!tx{`| zj6yQs%FRz8-Cj$PU{y&?+&wRBi8Ln#d+%J>{e$q)!6>u7iwxJ-GGb{XbMWHu51FKj z5?AkCsG{U#@VHl(TD$G4+Uque#-Bz(;NddQgH$19GjI)VkobgX-)!D6D{|atV74EyAxL~~LodhFzDuvPN$i;!9k!4)+iePkOv>L5?Q0(9gwjH5i zI^i^1ilZWUvcQ8l>gV1+$7oIJx=q5ZF{NTr4@f5biEjZY&oW1U9h5hJ; z>3Cs)lh-}(4Ce2!R2=y6-s$Snl7R-9#kWi9z_if%`~}oz#?S&y1&SNxTN(KKY;K*& zS2Obo88RU=8#ZmSMPxj3#>W}>=NXw~VBouU#>E_|hBK=p*K~-D>m4OF#z2KK$!E4< z7HBHXP<1?Bhtc&j5}TPdAeQ~+6;D>e&#)S3_&D3FD`a*ymsimkIRWMZJYM6-rPKnt zoH^Lo0EoQpwS!=7<6Q7L+TUMu9gKoC2s+eEhx}SD#%qU%oWe{IuE&mDrJ{k3mieg4g>l=xY3f``Mz>Rv+X-r;8E;t+9l?{Fgn zb4kbyP&xJpRj@{r=?A;qhN6fX~1xIARx{|HIy<7(AFJp4k{ zKwP~k>0hWCes;*KSHsT^dG%`e$&d>b7`Q*Rjgc=)_|J)PzIuMkB0E*$@9d9kTlWrv zdz+bAW$kJfMw^)t?3c)&wHB-CO$j8%za#Koz7Y&X-xf}ohc~GI1 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_0xd66bdde67324ae3081f10b2b8a34f33f.json b/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_0xd66bdde67324ae3081f10b2b8a34f33f.json new file mode 100644 index 00000000..451a121c --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_0xd66bdde67324ae3081f10b2b8a34f33f.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "098" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6c0c8d0ad36f7dca6c491ab4be3112ede8c5c4ac GIT binary patch literal 589 zcmV-T0Gs$D77Ua$)Pj^`T<$GpE>_f$%)f>;7+EB2t@IHoMX7${Ce^G z=ImK_Hm$vVT{a|_n37CL-hTV3LIo;8&JmPIJ;QZV;jF|JvPE;fM7eZ90VT`|%$?7# zfI4sX*&v*PeF4w~U>C+Uqg(<8NdW~=A69@aP;y!WDm(_|qR(1VOmq%q%PyxVGv1I8 zOjMPpC`Fcwm93(7FW~}9iH+AAU%!dJyJr%L@8gTFm%4f!gc({PB84Z#%JNFeYbgJ| z&i>*!>WbLJx{{W255B+6W)>v^NlQWJ5EK1fQ6a1}^)7FfM25bRiEni9jgIw=4Si!1 z-}vAgAM2YK`X(m6$-y`Iw{KsgBRk=#ay;j-Mm8n|`Z3{<%#j_qi9+SHYHA`5&)z4F zbGw6A(R>!9s?p3^Z{Dsq2l0M5Rfn|88g){m)CCViy45IkfU4Csvus_WMuy|zYIa^!;DWSzrGAQvpuzC?WY>+UoiE6^pMQh;$x zq-{+pL2Aji+n4)}?e=-_>0`S+>vh`g7k@!(cX&xCHw#-WJnSq`DAzJ z$3m~<(oLSCStB3{3zz>j6A~$e>z%mZ= zG%Mr2dlIh6u*f9h8DVI&K(Ht)F-$@!Q89;PEvV^OI`pCz@fH1(i_^989mC2GERs%l1 z2SONl-w`C`LxPNI#_6ME3h1-SB4>;QL`p1<5O6EmRFJn7bjDbO2m&3T5GyRAedl(Ji2CcX_gZ~@?a1~vO)3^4>o{2c7WRhg%$Ss|QdcHKuF=Sz(ogZS;f8e-T`3++zp!6s}2 z36N;K-wIu;&X#ePbj=o}>c~A1#=zW z49*cz{Pc41!iA7T&dIaI?(e$H{e95nhGR5ka^3iP*@5S7W$m=Looa$(COG9VP0em~ zGR#6O9r(*a#|}h-rw*5{(Zk4UpHpURc(!kC!U%zq+Rj6mEBeXuv1Q9@d_#TH_RW^|iNG z<4h7&1JFLE%)ApWWv$n9pG{5a%*eMh3*XL|Z|A&xy&3s>v+(uCe7*DX?as)zI}6|L zm~Z$0`Htq8k&^H>aNIHHRh_bs96l77^+~<8(FLf0Cwa=`xNo!DXiR%>;YVh#)dNR+ zwO7YqygD8eABht@^sLpoCAHq$aNZs=uGV`E2j&_`2dIq@9f0h;1=&6uvU4_MXBNoL z*^u7Zklrki-r11dvmv`50BQ6wn;MLVkE90U>b#^sk{aF{a&|SmH{|SUcqilu1wsY= zj$_Q0r(as*_V(!`%bZl!-{>*N*7|d`zTuS0+A)R7h7-eiNkrK?siyN1u*M&gKn8V{ zs@JwTBXGz<8B}?MD!KJw3ksVNokD+ej&_I- z^Yk@y35sc9YFG;_k5~ZnnYoR<(aUB`@?1daxvQ6;;1;&{hQ``dsa+P+5c;)KV32|< zW!5SuQ01W`LNFU$r68_(tJ~tce{$db4^E1C-|7zl0B=X+uK)l5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_report/report.rst new file mode 100644 index 00000000..d63b62f4 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_098/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a101 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 098 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 098 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012997 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_098/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_098/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_098/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e7d9dcd545be10ada0ea9a5e99e65e079630776e GIT binary patch literal 2850 zcmV+-3*Gb|iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grA_62pQ4(DxrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z``8X%Iziq#ed&AuN`FHCO7DUcb}3njQzaUEcy{;hy=N~j7H5G!FMj{;j~9}^=o82E zPCdk#PJsNrrX$StG>kYLdYy!My)WxN_Kt0UxN({mf(=Ob=P6gD_w2JErRSuC4|{-wg*tb;^WSao9UXdZ3zy zn%myubsuQ~QZd8~EfdHXp|2%mYG3~CpP&Ed@BjKdT0)MY5Khr=g`6N}^FlUXP;%QP zaif&q;Kc2XV!jv?vyth;Ov3es{J2`L$I&gmXF5FOa|n5qtFkP$nrfrmEZ3@?IQr6Z zbwOl`r-g+#_ z%5JNvbXvgTwmEQI9~q$s`M$efsi}=>v#Yi{)jerHj&8!Jjk2(MGE0`es>ab`K9|dp zo|ddM%MIxHwHNfVIZ+T{AkUe;i8Zbdq3+eXRax1SA?#R$t z?kbN}xwZQwjy~q$^70`@K409-Z5KEB6LjjE&Va`xK}&mb{Wc z9h=1L_I{&Pk@lo&M+SlqO?$`eg=Arss{BN0wbfakfk(11SYWjxDJ@9&oy0Hk=4g%^ zM{l;DSK{cM`H})6^;T`V=w;gZKFQnpC7gw#A?~rG%8NG4T^ehrmgYds-gv6irALs$ z>9WjTvA};FWJOLS4VWyykd!ULl1KKlFne)PjH@Kd+K)cK_Oql;m!;UcEsF+f>_cu5+WEUO`+rh zC=h^y#IjIAlVrM3`iu)SKf!r|2WKhPe4W9^)JCH=)=;DPtia$QgKcUQSafnQVepwt z@h0s*Gd+q^WKhTuwtNP&kh*3fo^q>j=p*VStCSsZaQAun1w4Z*YDJRU^)iTrTQez;1^IS|DuA{Oa`BVH19<+E z2cCU+^u-_h_=}{2JWQb@0}3VKtP(*fHG!7A+o@I|+LyfR5BNmu@Cx#6(*b3MK|Ldf z7mLECE(m#byT7HW1zp=zwfwfA7PpG|O{9q%hOhxy0C885Iz(B_X}d%nNzL6j`tY(k zG9BFt4UkuFH(Fn*wMJWQmle>54;WM1Ju@v!<2@@Jm=5L#wwHzfu*~0NGg> z3N*_?AjjUHE>f;4-8RkJuS$@hcUc*?TQAFS*%pc5f}g3%erE!D%gzcL#hKJzu7i22 zO|taix8J4$(?S@N0||$RncpYJ9J#LS)``0P=+){r&@Ccw7m3iC6Is8xcu}gIXK)aJ zoR;!jehaSi60-_u!s(;_40Qh+u%dTp2}n%|#QE~H0tz4k-+rp7QbPqf-K`VNKh@Fi zF*ONigjS;sv+l04#kdBgat{{N=++fb;`Qp&E^)o6bh_Z@Ll{x(t#UN z{}m(D6T8D)=+$*iAI@EZ3j}c5P62*JFzt#yxO{N%x^zIjOYRu?iPTnW_12?uJszG$ zA5ljMznrv<~EODDqQ7G7+WCAj}TNGc6`u50nOW?IZ~?hZtp z9@nRb)#d4}TKfuaQ5EjHAGu(>>752ccq)a_^3cVBqmgA?@rq!0bGRHWdr<7)47MGi zZaU#4TjVx4@-8Kps}X(FINGu1{U=aF_?!vRB8Qp>>gCG3RE1oT(nBN8t=dZh(VK2IA zI$jvy4(O02N@|hi& z1)54TR2`32VRZGJ#Cm20h-JTd$&;1vQ>+FWKFKy}3YneFte9z~QktyK{aNP4@!&x;Q15I{(%^9H8+apMCQ(C4OF<;Nd8-x}T7`f3%*tJVadGKU&Mc zToN(^)XpPjAmq`dkol`a3Ri~|t`kzYI;41YNbx!$#j8UWt`1rFKSGlFxL!374?j~i z5Ld5D`e&+!pB(b~)$o%;UcVZCG~`?b2JVk-W8}*c{yZ_xS1xW@WT#5}o&S+->;7SI ze?2p;tUb-bXgxE8{Sx`p)_gU+E`h}O=Op0yrW35LR9pwaCJQ=c<`LvhZhMP-)tb>E zC+FArd`8T9^2Q@M<{KE)+@@IILF_HLVUVbv=;NzC8+u45hseq)XhKt0e9a7yAww_y zlD8z!zPB}__f$0?CiwhQq6+HsMv)UaAqJ6k8)PRuWHd)dM09cg19jwyAGsU=0CxVC AMF0Q* literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_099/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_099/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2e2530ef83a3d6a42636280ac5a6e5eff847694e GIT binary patch literal 306 zcmV-20nPp&iwFpU%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z{y|yAn^#Z5UPMB+nQE5&BT4rn3qC-O@pXJ6AHsIc(mi%g!#DHI@0+jV@883NZEa#6 z&f88ko@+&%w=w)MXp!wy-e@VQVkNTRI^i8*+?L37%M~=fM2vbmNX7jO^~I&p)(>N2 zbpy_A)wKPHvc9|c++ok)KBcN@!<&$B13AS-4uoFsb;&-g=2 zz$*bg)i1H4);OXKC}Ow)!4RL|!zobJAj;bAgRTmH@!6_~lYzP!7>!Lh6U0QQ^@diMbU E0Bp*Y8~^|S literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_099/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_099/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..dcf1b44973a04c2dc39018fbef51d7e81bfa5c94 GIT binary patch literal 1293 zcmV+o1@ihIiwFpU%z9-4|6guzWMwXJYixQhbZu||rB>Z<95oOpG-QG zMPeh}u08h5Z)Scolb=_AXPfU;kNZgS;KE6L#s{2Tx}LVwqOuh>_ZWcee;nz1yANjA-Xc&%2G7 z8Xzgx-mOI5-AsC_YMC-VM_L}W0A8u&*b$z?Q#Mp!VFO`J-!!3+sbKSddZqNpnHrtC$3p6JuuU_?{ip@>S+g`%s z-OHP34_MpHwRVaeoj|(KPD1Z)FHE!%ed8uJiOz6{d7XLd-Dfv8h+M_SLPa|@olbXf z+(*Ut39%ZRfVoC$C{ zP1l*r+|JV!=TO(!7geyRTdyf${Fz$~r;%)|JVW=~HW?{9>!H8mvc_92&%&}+T{->g zCQkp?jBJx8nm8#5hO@miWjC>*=upR%O>-#|yeh*)dgr!+%&1ah`JK5sYBN&LDw_)-T!hWbY#;|shYMXs@gKk-g@J<>sdmm9+}Wr9$_Jo zDaX+kK$LOLtquL_omB?|I2_Oz_8O#ke|ENd7P3>{%V$tTr2JM z{wefh{}%t4U^)J#4DgpRj=$$@{MG}8R05=^cQ)NH%xhexaN)l`FXQMRABb$ca|r+d D9He(@ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_099/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_099/afni_proc/_report/report.rst new file mode 100644 index 00000000..b477dcc9 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_099/afni_proc/_report/report.rst @@ -0,0 +1,23 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a052 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 099 + diff --git a/Afni_proc_through_nipype/_subject_id_099/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_099/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8ebb3cfe05a7cc74a1d38cc6cdb45478d7aff8c5 GIT binary patch literal 2892 zcmV-S3$yeeiwFpU%z9-4|8iw>b!>EBVP1Bm#uZi? z*^-?&cA9A?Kb;IlNmI!q0w73H5)~z;MT+K_e&c1-Wo zL%it($RBDt!u&wPh{vJlxqc8wcN^y|J%mFmh`*0F{v3Z7uScuu1o_x>ow)vBX|C>8 zrYDZpE~^d$(=vloe(GzU2c6?+^)PhwfGGJsj#m882}~Qsn`TCN{QZ#`i8X!*L*1+QYqE0KkRPd?zS8Y0adhJadM?^=bVr8DN?&=T%AJG9 zar7GjW>yF>@`cj2xLev5PSB}uIwJv-0IeL#&8MIT0u4gGkVa>Stt5!>oti}K_HnCI zZ5%dgJsAvqVA}iUAS8}eYw}~I(^cnj20IeRz`!bNcM`oso1-~y9KG3nT8*Q3 z7PAQqX?E(V)2p=dJrcL`DVz^Qhq%YKD$lymcV()bTABmtdgF=GY&?Vzrf!*oQc?IO z$QAekDL`lWnXJ@WRke0pJ5aj~u<1r#+LB7dSrWfauc17Pqs>e4JokJ;(-la3s1JLQ!=+vy%t1Y!zY1biFVAb?xzONkSAdQzFb%^7aVzSzoYrRWB zS-wiet){Fdc`3)o|GBxen0TTTK>WqZ6Yie=B-FN%AGLK(YB{Z`pH z2LmH*+7t6-ox!f3;5@;0s&;#?m@ngSe-1|b1#z!fDC-&-BA6ycsq6wM5`cq5vRFp5 zq`OqU&j*^H;5@;jvkYs#&fu3+Mx!#;Sflu?$lx)9Z7LL4v~w_H@R>{THmyH1J&H4A zP{)V3Y5+ig%@f0z( zLV-H%GLG6_k>Vmd98;LMgA9KYWY7tj(QJw}O#Sz522QA&p`}y#iOJNnnCcu^88j%I z>2##o)X4BDW0}r)i|ip2g$aXc&^1k;Z( zuusLO+Jq6I^{yA%WU-t4Jx`U6+FcY(D6A$jYl(Np@Brdn$s#nDF>1bhUn)Cf~z46;g1Jp$H~ zaGT|AQ3QT)_i5!BoWWJK+K{`=3Xp_bb1IMn`gVshfUXR5@#7cI;ru5Dp8ewMFFqgQ zFOmv!m_h{y3?;EyC4{ok2D9XYUabbBeJQy9NJzMjpdjBi9bjfy_Yrc0LP^@zB`L4& z4tF%QsB7D*mfw}s(oQMAjkLm+A#FhvfZSCZJ;E#&xLv}I8tsEP`rtAn>`^;TEyRutfedyJ^>Oa}`i+snZ}xeSaYXve2GKz0tA0?o1z(6RSY zC*_*b@6x#aq6`6gm!)wB&58`uwoC{Yd{UPE&J6gLos+gobE>`C1o2LnMCpTXzs(4y zg)k;}5gw1Z-zGO4xv3m93A_F1YIYmw7NNJxglH|0tY2T8lv?iyE&>qKa-Prcz&x)o zUO*9UAI&4+{cnIr@6Z%zv>QOqSJMnA0ttNkiJ~@ID$wbElW_i&NB@$^Nw_0)T3zUM zcb!ef4M>%H;83gIRDg*$Yft(_^|I3IgPsqdMQwH}RkhtXR2sl)m0Fub6oUDNIKP4P z`fa5FUL`qk?;^1!)SM*j?=B4c{6+ZS#h6<^M272YTw!~Id-3$^Pq`$E5>@YB%A(|E z@UUNRv=2K~wcl%k8J~@Vz{6!h0IEXLX6PFHFwqI4k-H&J@*UK!Jg&m!f!s8fiDFn% z#Q17OsiAd2x<|6^N>%h}a1T-VJXq?uTg^89}_^M`_9jTVICdF_gfaun1 z2mNa031omC8XEr%SeGn}@_SJc7u!Nu#+1@$gjG4kU^SFJZY4=c@hd>Xx9eb|??y@=pS zwF>t*$hnV`7XeQT#`~9UgvkW05 z!4g$r-Tlaf38r@%jNw!Yqt&sC14konyyA&qd~>`St$L8`pbWMhscAalELY;Uc=DDa ziu_P7Z1c07l3FU}=AWqi5_H!`ymz{`$r0zd!tTx{XF43D1`Nt^^XD{fpTo!+@+y?oOvU=Vbt4g_f4_gt z-_PU9{8dmme-&gr$`_@?qeasbi`_5)$AoM&dD_;msJ ziQSaMVku3m%${}6G{{8ZjcmOH{%LBNc*SJ=M0SX2ShBG$+v4IR?ohR!n3c4V8Wm{7 zVy<5^M{Ykxrvq2>jpS|L553?v@WpInQ^^vFqbC)ILo*$DWPNe&kPBela+kVtuC9kZ zY`WZZOx%amcVInn*=ps^pZNLsuW>ktZYKGTljricv-JzBFpmCZpdnGPPO=Xc^d@8p z`OyKZu%$yl(&zh4&d>slR3)1$$C);vQ5=nMnz5<$KDP!a_lNJ+cybD9!TP*m<6P=| zTFAi9uQ~G9X>SjN;p`1A@3R?;c03>-TVW=j4>KpPL$e`kmOJr0{wt2-OrqV7|Ds#dEic_iU>sUeVk*s-28s^ z=jQB1cQ&oPeOoppmza`FNZx+`r9uTNLCz7BNIk=KQ{k+{6|zNhy+pZmK>;Pq3e26) zZ-6@Q_Sqnuf_(wd1z;D(HKSYt21x-0P#;!+E>Ln>11dZQ<)Y78QcQFXWy>z7C^O!W z5KL5+rzl01iHt-%kwB^SM4*uABV;&? zjE0es2{IZ+#>2?i1Q`z_lVN1?A4okPX49ZMoM;+!t7D~4G!4&2noq;Ck>=CzB=X(_ zO8V3qQ-7;SeCU$H>BE(!H&xfKKYDGAuH?uCyUDtMl|U|7sC|j}?$`ZkI#!@dKBWNT zm`K~2Qi9ZyZMU!Y9oy~8;QYMZp7lEI_KUxuHS(7gQgC_g6Udp!C_^M;n4t<2Bz&Fj cQ;z4Dz{)Q~5QLxN#BUq#7IJJop7;m=05^ahF8}}l literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_099/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_099/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..435790eb16795cd842cbaeded0b5b4e6b5bb9636 GIT binary patch literal 1539 zcmV+e2K@OSiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~2~NZF)gF40{mV zhuB*x%aWbJBEa@itN`DpJ#7DIzhZx7hm>q5 zDYB+@g&-2i!}ERT@FRWr>yZDt`b$Q$ql~y2%}7ESaS7|27vmw3g}$;2@8XZ5 z@mq0R)b%W4I3-ZTP+UML*PAg0_yH11Ps24C7MVmmBMgle2o_~2hDj(TD&~;P1xO;13a442@9c9QB4Sj=Bt&L_=YTe| z4wD9iWQejXS8@{XO2Px2AnP!QNiY~wyOm;Lwo**e75@b{}P9G&FfWD|Ka>htNq{QL~0k@J(1$kFNXN*ONAkYB{vBDBQ#^ZOO z)lY~K6~Q3_f(iD=qboL-W;qcg4+dc*8ziqlZc_0KaR!+YQXy+MVRmLz5RtRV=&f9u zRZFmxDFZ$+a^r`83mXTm$b}g#L z;2aUf&#&e$T?$F$oIYFZ{;td1-v>>uIYv_^*Ntx$9eD0n)=q2NsU|pPf>RFD)a+I# z!z{$ofxj$t>_8-V>Tu~AJ&dgOIc3I%XZzMBj1VZPNcg(k#Cbh<@<3;8!KuZRbd?;|+)~(+aH@|+13pRisP;nD8fU<(uf4q* zXOgHIfc7zE=ACdUYrUTP{KS;@lziLM@NJLzwlB)JGbP{7G<-W_zMYHm?M}(JI}P9N zm~Z$0`Htq8k&^H>aNIHHRh_bs96l15^-0}Z>jG53lRRZ|+_%wfG){VO;YViA>w%-a z+Uw)5ULTK%kHiTcde&;yl3MMpIqwb`SF62-19J_e1Jp){4nX$afoz=***+h#Jq=|0 ze8|rEkez8DJLf}o&xh=O1ff1}47TdObB>Y7t3YsVBSYfcR3B@t!ow3;qTz#4x_0vXg* zs$SdXjKCoaWl-f2s$_3#3ksVNokD+mfwI17%$rcGL1m4TW+*+cwb|)5p#()p38?nu zsKP@CD!2`|auD7}RGT#c>{zeBTRX`8#ISvs|$?p-9*^X`XDROJwEi3pO| zJbTStfMQyh8rA~KBNo7XW^Q9|^`aS*JQq-U?&<|7xP>jgp|NtJ)Gmu@2>r$xFi63* zGHaC+sB)Len-0RFFHQR{>=krC;o@b?azCX?ndU}e-!uM6a->mgoI!=x=KM@vsSmo_cZt2{{SQA`4s98002yB=RW`d literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_099/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_099/create_stimuli/_report/report.rst new file mode 100644 index 00000000..77fc65ed --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_099/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a052 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 099 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 099 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012344 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_099/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_099/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_099/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7354ef32a4199e11e1181b7cd377ccd8682e0acf GIT binary patch literal 2850 zcmV+-3*Gb|iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=xQ4&=prbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B6}{_KAD~x#k3K?QrDs73yOgZNsS=Gn{C4;3Io}=}EWQQ)viSFZeY%kRMV~pQ zcjh6^bOPk}H63BDr(wk5(DPhBh@<<`#YhL?&eSKP{pVm>BjBh!bOgzGK&Nwr>&qdR=hba=?;5b`KjWm#%9)ke8lu2nm6^p)l6 zn#G5XIVnBj1KZ;{X|I|kZ9Xp)HuLKVOvYa~4F308^;Sozb{c>KKSa7~xqckI^F)%B zy;f7{w1CB3bKtl>GC~jXegB|RQybN0S8aEy`_e%i-G)&cWnuMXmMnc;jibeUE|()c zEm>)n8_@G>FX&}+q9DRRo-=(DYg`{fJ*ai7va&D9Pt;adX?K-4x^;vOb9NlvlcBTR zRi3DFYwu|seage-B#H1l zHi_BYgGQ?&?Mu~;3^4ID}%F8%fzmh-B4gRoM3vu*5y)qpDtxlC*n&n!hq1MaI8q^BhI$fFTD*M?jxbRO}WZ_qG zvfP!cohwOMe4UFsby-d7QjQP)dwXHQ$Gf?bVeaPgJ7S?^ISDA1?BQ-MSMto=LT*PC zOV~~NH%i6@=o!@!$nmI6-_%HO5S(mj(lnCvkL(KSkKY*K1?OtHaWgbf;YWcFvJ32X5N3`VqJvm^H0 z(14lWv%M61J)7bIgFT9aftKP4V?SYS82^B2!*eJJJetGjlq+N8=@Z)Tjwoi=Hn(bl zF*>Dqj2N!apo?~yh1y<$;sP6vX^h-nioXd`=!8r(n_>;q_4_shN7PN<(y9H(Wcpc5 zeGaS?8Wc`+8fh{%QhdfR)0x#GyU%1{#9*3qP19%FB;YWGeT(V03mV0y!D5p(P8lOl zWH5E)4hAXqsrgtNF($O%^+KFBus2EZ1bh99#-Cy5-Pz8SzWDqCfUG=Cv1=I=`{p2R zc$y!i4IiDP7>~Ua2R6lqcRI)#CJyF%*Z`s4pSK_#4jRw3*$J>|vBS`u;|Oi6jnJ$; zlLmX;PN&*b7->*zCXdqF9TlGbpj94RlCB^~-gz!{ly14MR-4b`=#xtZJ^~GEgj014 zwn|lf4yq^7HjA6N9O#4lFUl|B8C+2-lH9JBK_uLnNr5cLw|i6pv}KTspB){-^PfEM z?4#o^|J27{CLQEq3LP0xC<$kk2ui65wB)@`wF=R`;$45hCt8PBkZ+p~C^HP|89BUI z6gG81$gA7^Eln-x+NP@Iw*|GhRm^W9P24bq4afqByNc8y%3@C2CF)3O?#0o^SJjc} z=vHWeyn46M`dY0u+G@M3fIi$|Ol|kvv@DJHtZ-mDm><|)7XFhH!BBv4e1-#LXJIJN zEDM1g`*6BQxvF&AG;hBuL4w|AW!zr9EW>46B!UZmrYifr3Fs|5D{K^JQhT`$=B+l# z(#PL@mkLY^VN4Dr93EzVpB!`Ky0TX%>h_b@tJ^@gh`e1SLTgTB{pRvTsdk>jK>%`E z%5(WGxXw$=Dxe9ckNR`a{cpjF-lHWTH6;+|%hL)dfCzl|nW9P!736fcPBi~iM}NT7 zB%BdijW*1>zseTl8kEWdSWu%|S3rr^tIxW`^`g@0f}f9JM6I{V6}2htD-x($rP?GJ zg=D^!o1H*9-KHYJs*;*`a9P+AX-*3E;ia&LN8zKRVPLz-c=L_%*?_Yx>~w!NKdw0rft)W8|k&TdmbwkIVIVcouzB zdEAxLy@=p)r2^+TsJYLQHv*m(40o@b2$NfQu~C-b{{JYcH0-&q#oL-`F~_-k5OI23 zpB`41r?+bDYq&*KxbJ@Cg7Kzz77XF36h_NK7YB|;mT}E1g5mAqa*6Li*($2VLU#5uHiKby09Qp9I1wInOP-HL$s3^0-{1`p62GIllc4SwvVt)9-?o%{eChSgubJ@@N8*Dci_q32S4og`o3#tT+ESbxUf2LO^4XH-brF(^i?R6d}bGB zfu_<7RmY=M7+t*}v7T80V%cwB@nj|Z6sv)TPqU4hLS|=kc@>S26JRdDqZN)^N-dzv znSr%6fXLfjISN+RE(M>V!^0KV!6;aPpaacx$gkyMymEZZDa;h%hJ1ya@D)a@-6%@--|h9WJ19Z7vH{0iC+{acsNe19www79@%oU3>q8d)kC3E3ZdMJ%!_QO= z#MPUU{+X)bCx^UwHT>j|H?M{t4LMhVf%{|I82Pe<|Cku(E0?z{vQs7gF8;{2_3$Wo zxSp9-*1l$8w4NEleu?~PYrdM^lt5zqa}w};(+O5rDz1ZIlLehJ^9XV$x4liiYR%}7 zlk*#VJ|pHldE=2B^9>AYZc{AqAoiBrFi2ES^yzh<4LzijLuBO)G@+?0zGeoBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO5YAn4kQL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=r5&5l_y_<1#WEr? literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_100/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_100/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e1222a1a74801310f316d467c7c0a8107e8d235d GIT binary patch literal 1535 zcmVc>u;XIHOMHj+k z;hEOaJZn2Gf+B$7AZY6@l0{KxKu{7jqDLYXlA5s-7-%;^18^60(f(1tqQBBhO7rjp zZk$X6!xG8Md(OQ)CbrN8!g}V#ctB*XFYUuSf1B5S z&rkBIUPKHhB-ht`L9il7DwgbI{gUqm#> z^{vy>UEJ7i=X%-0lAwT!Traq}zU*@r(w@a#ig^!c6^&~{F8X22hbSfk5(CL6`+Gm< zdM#5lmNT8#DN{s**eA2r;1Vg0LK*|F#Sq65-d9a8P$0hI0z$b~k9b1rhcOAcP#%yp z29mx6+vVm~d#BTAG$4G_E4YH7fP5#<^a?p5J`m!}a=uzdEJzA|fP@m6f%65HQII8R z5%;~*aCL@7DiKc!L!$+PMOlkr5=w}QI3#lgl1QY&Nt)~1hunjR7?lwTkQv|^pe=j@ zllp|Dh_W(Gyg-yc)EnP8R1T*cHw9`^f$0oKJwy&kMg8fUN?@bM!M z!od5kAPFB3WK=UwA0<;jUz8RZW5g#?VsVUsTfwG;yrZBq!XiKrXdeYwVF@4O@!Qbq z#l(n;-~a)^7<=Q4GoCuN!gD{fzesd$PwgUkr2khPmIn;8{EWNb2eGm~c3 zVyq~zPqB)og1S4Jnz26PLxu)KNVDXV{0;?$Wrw{mAPh5qN@_P!EMPN%Izde)X_G|U zN_iY38JiUgGJ&m(^g;^+b2JD&i2Mi*F@*>}Yc`CE%*su`3on^oO*o@wAn396S_l9(03X=>MfJ52bUjUpKQX%!mSb>^ zi2RqA%NH&LBy>)nEp~rbW#%1%CN~|UDU<8kx2q03_eyK0x$Be@95cZwhG}AUtCM0D zVCleL8aQ?!6g+Xbbd4THR)?H2W5d%!YZHVBl+<({!YtPc)|Z1Sj8;b^Hk}F(yZ`E> zZX&4{-v~tCzyH(YXJ+>OMiarQ#gufF98}yw*pqO|k6H~rN&2wzTvci_;N{oBL4`9( zR0TkLm@@N@xs;V|*L^lMr8Ott);xS$W4^8P@@>z_w>=Nv_Ly(`ynH)z^6kvSw=?G3 z`G3BnIcB6FybB!n%z0I%EFeb@1!g@`ZESV`%I9&GFgfnq>eOn}9$fg5IcRjj(Lv?a z$ycvV#>7YB1P@(nwP8tZbT^%Mhm5O@Zq0$Y2GRj)BSZ%vyYE0Y&xUNB4cVFpvUN6O z`)tVeJdo|PAv_A zm@QAgw#Lof*(1xGRMy|BeBRaYM?i^)(-I&**ScA$M$Mrxq8qMu?rw%13LP|ijCr1?? zLQuhNxox+VXP#cCJ;nt=SBBHOBCHJ^rFFh@9a9A%D zb&SmS^(A8mHCFUuAA-_rsK?dl>hK3N3zoLIZ<>Wu8|uM%LOtt#SVv_J;g*OXiS^lQ z<_Z+k!ql)9SROMU<}-5}d!tv)nBqNa5mT%rY;bN}1~Vjb4KLSb}<9{`mWU{xZ+sdKobrq~W@1 zuUJqnoATcAcE}EH?mTF>TFuV3_rUL9><2h(wzhYIAT$-YwTC-gnP#(uQAA(oQ4kUM lA4a{`Ie{1$Apw|;u2K-!qSbBw!`sYr{{z$ndsONV008;9+#dh{ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_100/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_100/create_stimuli/_report/report.rst new file mode 100644 index 00000000..c2956956 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_100/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a073 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 100 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 100 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012565 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_100/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_100/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_100/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ed0610ef095b83b349f140c4297ae0213bb149b8 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj*`|=Dgq=(kup^!rbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B1)b?dUZH(~-t*J;PFZ{$d z+%p$(hV3J-uWAT$JryGk2d?XQeiYsn=OZ121JjSbk2d}my^PkwRb_-cY&dpQd$=@n zcPsG|g=?2x2fkq%{uwv+RM&;cQMkGv*qTqAd>@4?USRu%g`(k7c;gWa3~97CwXq(B zhy2j75PxE#KCtWYw(7Z9aa?38uHhonuo33VecMo6&(Rcr=sCe)s7#sg3J!WFNb?m# zSF)K5uX#xIk%A#+U>ZP14?Hy{Q~UC}fB*A8|9I=Oa0S`AOgM$V7cxRFofXpAyqtMZ z%59ahdG0}BySODp#B5}EFq3e-Aw90v>rr@%?-@1^`5ZzXrK%)}t)|i_H_NqZCknqb z9Zfa)z&0kOhrDmOJSXl|)1=L3g?ur)8N+z|Rm0$auT^h#VfoDmA51ZFZG*r@Aj5MBz;swNM&XPi9HtSJfz7hU{cW zPfL=Udp6JibuOJSY_TQ*`DT_JGGEK`Z-G{WSZ>SEBHp#gYOd^;T`V=vCVJKFQns63#-=5ck+o`9&M%u8h?)Q?;RHZ#X3j8ZcRUA<5N7MX4TC_ms8>oNi==EulabOY+z1i1Ldl+`N=O&I)|E zx6%i*SZd%8xw=?x?L$SrORr1^K&w-wmu9tAX(;t_vj(*Sw@z2$y7GQ{8!r6g7FqbE zoUC@GYUff?mS5%KR$Wr!x|E`W|K40$^6+k^q#L`L>`pFUGVK@?O4e{UlPS5zZa%Y< z%ayPb_ivT-Iq2!rp`A>&q%qj>Vw@$|nz}9S=H>Tjon>5>FROpL4$I#W+jw;5@;qr!n}1+NjjV9I6zb=NUX?utkl0lTP+03_f=# zF4F#U!=*SuI)w~j(_=6TscRc*t)Af5614qaTBCF42VZ>mXbXC=6+a%y1fqj$dxAH2*hR$MxHclBM zH^*S=$QcY0>{0WvI$}&{zvBitX<&Df;0bp7^TuCb=iPabDSiIw9DuAmO|WC?6nn-X zX}GHACk+psBp8p~1p5}nx_dfE>jw50d)NSh)?c(B9X1*-wAl%;X|co5T;K?8td7vE zJ(C7|-AO@C>df6;W!}%ODbN&7?pYKFX9gJFolj3D3qA9LIkDQ1X|Kwr&@(*U-FJO;A5@B%gD0~8jX(fUfMHQGwMEQ3DWVN5OO+%Qd*cgoeAhID=lmlW>R~#4(6>k z$5{tzE?q`JIUC+ha2SF2lJGl{%iCPHgLWc}{qMX7e4!9f6W zTFP?SZMe=W%qpM>r;qwG(EV?~ir%3mAT~u1=d05S$b$%c`>Cvm4F%+Mw@x(wR7bzZ z)Fhk{T8%c$y1UL6;|7$4KjRVMM97$`z$4?#m*mTDjUJ z8HHrNk(r%9I^Cu$!m8q$xOY+55@}8f_Wp&iheyG~qhV@&AL)*#rgFuN)Y0?f&r)#} z#jf7HR7LU0;8C|GHuqZbuQ zKu#LV#4+4bgnXqemz8O^ec_(vrq>k@RS)s7UHh(j%A*N6O5fjAbxgfX zd!`sp1d!cYb+20~KZOd=0$t_426pj{aqz<%OG`hpiI7q&U8uep(`g<4YJF+8`orBzC&Ks^UT%~{xc@(hD-FAjWAc`2n9OnR4n&+D z*QbZo)#7)61TF^;x)s+$qxcQbr?2q_2=eS9 z-SEh(o=Nmwc+*4JA`j6woqj(a^aIb<9C)@g!&~rV@cbWp#j{n&Zo{6mGJoCG40_>B z!*&B7$FFC8Hn zt)ylXQe;AEI&4^Ei%7ZTjE__B&(%}$K;Lt$l!G}^4Rfm#$FPZw_~u@hZ~mHm^Vi{%{o~El=xK2pn>X5msL*}j%GIw>z{M8}z|3^qtAJ?k};^7yn z2IA^_bPljBmK;QYPZH#u&q~BF5XKb+W%VIKPc77@ zyNZJ1&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMUy^s zQv)RB+Pk&3cefHHGd`}YZ3s0+F!f?@rt~BeYDNT1K_IkeXHUQNZl|uhQG$Mo84jmbPz=m zdLDMQvee@K+Q64?3oal*KuT7acM}aLBpM3TgCMLfgSkXg!_qP@YQI1Jx4Dj_x-di) zAjv!}n2H^Smq-qlDU9Qm^C=#BAWla|A>Y_d^Z2ngR)2S%io zi)j|4=NDu~IePehHwr8YnOhpKwUll2P zP#s*}d|Jw+a&XaGZZ#}r-@ChW>9er)qJU(1>~_}3h_T4Qzf#Crn7gAyA$Xadv^1Df zSQBD<(lTXyj&eB8&(Kl{lljugs)XllK-hFm$gUD5EEL3z-6Gh!o ze}IY)2(cQ;Zsr6h1PMHB_uD;R#%`aFrP4s)B7vgf(K~m$?sL_MGX9l6Vi{xXoC$Ed zP1jk--0qVU=TO(!=T)$%+o&mF{F%EMP9xb^d4}$}9WqvS-a~)IWsSF5o`q$tx^nvE zb)5dM8QCFCG;vZA3}njo90p`cvXgp^v-PunNg+2@;h@|*mQK&fN-(D z(r)U8g1+CmVh6pyU5Bnwg05%oyZ_}%=*Xs_QZ;Q&yK2iUd+Uwcsb>kHdTc^pd4PpP zW*kRb08z#{w>I>zcWwhGUQWib|LTjs{|L{YZj;E$WQfFeHN>zXg$CLh#r?;lWDvy} z9d-L~8b?`gIO_F>y>5iN7{F?Su9fx%aT4`MqqsX9rlTn7!U#r#?C~fb zoWdaXZ}G<{c Cmv;03 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_102/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_102/afni_proc/_report/report.rst new file mode 100644 index 00000000..c444e66f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_102/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a051 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 102 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 102 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072565 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_102/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_102/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_102/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..759a96133c48b0ac0ed531a99925496bb0265488 GIT binary patch literal 2547 zcmVb!>EBVP=K-|iol|MK^bm-4^#3m=Ck zAri13qiA5+hzNa)Ab})d7({WF-crwcx`-rhoW0KO{W1F?+ep{UF^UKd{H*bCX>RV? z!cLany=*#(v5VsqVG>zk2!pe9Z9nntm>PMVrK?fm$Jj&JXeqt=2s%b=w)gCblcfjZ zDDaT@%0&b4t}psl6cRHCk#B}LL@xFb5o-eTso`@z%`mc~3o7gdn zk}O(hir|NnL{{!cgHAbv7%{NdQI$OUxZYSAceZ3>uS4YHfya~L+NJeH*R2Cu9*0ET74+S zUMLFco>HJ~u_%|fiuZGv_rIwd?C-U;cGpn4O~7%KAUkk_C`;detm?*IyJd9S;Kg-3 z^n(aFNeHRFby#nhO{LW{J6&a8Jg~NJS^BvM zD=Q`hMIudFWlKCpClU6CBB2Rd-Pg5eUn+z zf36!!vu-Mf%AVO#!KbT5c~h>?U}^r^UDbG=rS~u8Pwa|EdZS%Qs)l&CEbWv^RTAX#&8l+-`p&FtM=Dlr z4hK<=ixhh^vs*jmVwEJjb1>X3Njv3I)wbvq@g#4`)c`=50utw%b)^U0^G+IsA(0SWL$qSqz_+IXvR9$CP514UVTAJ`EV&V)9cQGQ2`<;zEH#g!vz^uIJif;}*EQtE_q}j|!@kGxki#Lv z@z7e}DW^Z>bvXNgStInB6J&f2pE6%LrO=)-c`#;}kL_I4GN*LR@C0$bLW2bzaDjSZ znc*@&9oHBK{RRFmUO+$LX7d=f2#Y`RI5=iz2CmKY$C#7znAse<3+OO7wb@M5iL<~b zoM$!{E%F9j7RDTANw+L}{+R@vEa1T9d``10;-OVzKwJOjWej~6&_9fl)3Tr@%}iWiLty;@*02^To_ z7%A1L){L7r!`q0p~wG@Vuj!U;lPMzRm^oFa^On zFqGV9lM+g`1#ankT}6S}z7d0HDCS&8G*IMWAD9`jBZPdhRFSuASuUE}g9nybwyiDG zDsIbW=OX=-0C0gf5*3U04iqbuRivZ-bS`>;8V4YXFD4+?q5A6VW z{}qVnCMyB8r2;u$n^iy=NZBivYvT4r zVoRwxE!f{&nD)g{^6+T1zOj#-AhOm=TldzFp1u6#dR|4jsXLddD8Csz>NV8Xe!Fh= zx*E9g>rotsq$-L)RcP4^0!J9+Heoh;Hxy{SgW1(5b+|mxo5nIV3|opiU#}T8b0+pL z>{(&9u4H6INQBRI99qXBn$lY|nMteS*vdV8TQ{qYnU$GjhT%p4*=;C$y?X5_RDhj0 zmhc^Tmv4;2zg}5d`X3(=T58n`)i?KaR);@X=TGO;8`J-W9%hOE!d#Hrwq=jbEx`o` z$fCUfYz*qnehDPSQ{6k9zvzTSRfKUWa=e)Z7>O zi$G|_quon4!h8!aH)|^F|4;HtBViD@qGw^3yUyK!8E4n^*=2QYwpAP7!WK1Q-~FEj z6LEMFkKj~F(zQ`QV&9@+yyb~tv@%*t*Fq?EFb1C;S;KxZEmVX}fxe|kk}$AKTf+1~ z#jKPI^PdThM};A*iY*HzIOtZx2#xc{pD*9x@dxr8AqPkFm1mm$DP4&W@#rD?UN9Ks zopBQRb^vEfE4>CMLlnRDiKi%RZDdJUEK)uSfZ#88N}7`|I=Pr~B)U6vsVae)q#&fo9Q)H|8Dp&a~!(1Um7Hcbxg}93PuS5^H%*TIq+T8B;}a_LOSE7Q9*!N`jn0rCo=W9V6fJZA2?i_%BY% J#$ve@002!y>JR_` literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_0xdd8761564040ddbfdd0333c88f5b5d04.json b/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_0xdd8761564040ddbfdd0333c88f5b5d04.json new file mode 100644 index 00000000..9b31e018 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_0xdd8761564040ddbfdd0333c88f5b5d04.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "102" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..340f0b3e22c1b217d408ab21510ee020da6bfdb3 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO5YAnMwSL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=(4{np_y_<1#^xe8 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3f4fb4ab0c96c2b8d15c3aa74c448fbb12d739ba GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=An>c!x$?(9H!j&nf6i!joDnyp8A&K3E@6H1Vmu_W&{y{0UHo1& zel1Rlx}HZ2r=-xUfgo5BBo$5bgcf=k#gqsvg7~=5pFWNlMVa6MQnBE9KSm`=p)VsE z7W($-=`Qv*TZLZqu_P#@qR?}0p|1vK@y2nIL!)u=YabV5u-9DAu}2x*pllHWr?VcB6X3<<+5n3CGf3=7yypiWSeN!lb4 zw=kA~39>N>6Xa!1SOAKjgPpi4^E5RpgtN@9`^e*bsgV;9zui|u3>#{p)%L#Hf^8rH z5{>s;p=;IIGVYSD*`ib(yNANKHX$$W<}9!Qj!&7Zl}h8E_07@fQ`7YoQvryQoK*{x27 zS%{?re_80*fk^Pw;nFpF7+D=~%8U)q4y;WWAy87wc?7duE7(8|>o8g$k=Sr*Kz=lJE|2+%@M_owAS|JrbDpN!{D%0#v}0JY{m+x7BSlraiduBeU=Iz|nr~ z^~o2nPsYSY;sg&pYqf4kt@k#ZcZZCt^~u zjxk%Ferb(cJ7o3&$hEpnQ*AyxnP7LQI5oPPNnl4Jf8h=az8Prv( zUfbb}z#$7|P~{P-H6~O(@o&vc^d>l%Cgm*y%Q*1Vu;*sP^Qj z!b1ouxGlHiwu{`?YqZa}Ac!0VB(sIoTYar8^zCg;7QLb#M{!K_^{V6^_v?jc)eR2o zg|d#3#h$)m?4ZVqU+zIrdIj~l8eJWJgJ#LnHup@kbZSH0zeuR(-4C0n$|2km5hSsB z_L{i_#k4RrtOb_GEP(mU+{WJOWiuvuE}-<>(@Rir3tN0cV{NL`E{kah{l*zENWrx- zYn2nIa#zZm4#J`@P5UnF6?919;$_ToKcz~U>iVr-fcsdA`hM}`+rR%b&tG~GF&m`e zx@@mlP%fMD-U-9)hg+@9t*+Pg!qAVx(Cc(M!S;5v>2HQ!7bW`LNFU$r68_(tJ~tce(t;f0+0&w7U~ZG07OXT^#A|> literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_report/report.rst new file mode 100644 index 00000000..3476501a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_102/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a051 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 102 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 102 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.035142 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_102/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_102/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_102/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8f8cd79cd8c0075c8a5badae42b80a76effa13c2 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIJT2%CuuSnR%vS~6#){UD4VJh(;`J<%s&&LEl1K|KwwEi!e6ieNhxus zz3dF`f?lOJeSyA0pQBfOlTOcq6m}_Du~Q`)d-(0{*>k=60-!mN^@;QV&%2ipGT1~Z4ZkB7+P8@w{ zxw>ZYp<_-;5Bb3Mcuv}>W=WgR3x&=6dIFR2R}F*zomRcoQL3E=;J^=&?pm%NNAEnA zWM!w-R5~qSanl?)u8)k+gM8oKtJKs+wb@nMo$9W%7f07&)J9oYJ((p-UsdC1F`vuj zNKZ>vn&k%c{L%}0*_f^o`FZQFj!!*(IEXq9N|Eqsogm%v~C5Czj?w&0c$|)TKv| z!s)WiUa`P`9b`pLBn_A>zmSz`qoP*#syk|10#4WR!iG>JizWGMbtL6Q9Iao-A7_UF z+*{ebSu8CKhFo1Lw|0d%x=XK22SBS+rI%*8R%xj9aF;|%nS>Cjd#U(y-u`U%bxY){>8ZWZz+9B$9RU|Y;>6~vORkr2T+X$mD5 zK!E@pB$kB|nk3VO(&t>D`3cSwJUC6U=IabTqBa_}v4$GOrv(NN8EjLdz@n3b34>2v ziZ^Nhsp(OiB7;JPu;nwDh14|@@f31Fqce@(slZ@rGmiykGUbJODfT@(#Yaqv#|%ac z#tilutT9W0Ckf^6(q-wMNgGV|n1tvWr8YJxH9V%+U@*c44LdUXv(kjMcmoC_+OXLX zdv0jJ%V>AEXT*9iE50MeorPkeU*R^W|v;6hH*N`&3b-h6-}JTPK=-s-xd$ zY7))}twtMW-CkvjaScl44lJnAtt+6!>(!@S;(Af(bivO@FrwC5<%-&rb`=R!tx|20 zj6yQs%FRw7oo-W+U{y&?+&M37i8Ln#d+%J>{e$q~!7#JBiwxJ-GUDc1=HU6^Z!<|1 zC9dvXsG{U#@Tgmpn!Bxv+U?YV#_xwg;NcR_gH$19({~N7pZJ7m{?j`wDJR74Ey&Trl4BPJ$skmBMIw=;FZ9$TBW@MKHWRT#lAKD0XlL+m28- zop6#ZavL0Zmy*kIeO=t-CijbKv5=kpjLl$}9l%x51x|zq-IC{{QSt`pvp0AH1bOz6 zVfy4%&m{h9blpeTCJ)iK-F`nA3_{=0U3j)MqZ{yK@Pi+E#UthmA{=a&&R%yl!(MdV zbi6RY$?KkX`?GggDh~X3?{s-#!9e}Y{M#k9Z(3+|_5x}>V`zb<0>!n`%?$i~HnYy; zE1B7Z44IIb4x2XFA~GI1Pg|CqE72cGu zctyVARrrc2U-3=(7Ou#*a239VlyBjO`JT-oBU8c^;JE9@ug|#)-19?2`=MKTq{>nEmKmX=sO8l%i!NXxqtKmn7ym~dfHso9d2JY*&G4f>z{~)t_d zZ#^@utX<8*XgxE8{Sx`p)_gU+DS^cJrzGI{rW35LR9pwaCJQ=c<`LvhJ|~c`S~EK2 z+y#2~V6g6xEcjOOTwh%WAbBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO5YAnw|WL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=%KF<$_y_<1%%mdo literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_103/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_103/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..49c95a29f5bbc09b18da3ee6904bf07b91401c77 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b6gLzmg^(MBa1m5hA4bbV zcH1y}C4p9`LW+V=+w=h*s)m*2neps6J7W*FXEy;wYF|*1{MM7a$N{aRI5U*CU>g`e95$E|do# zje(@Ez;?O0-G0z%G#Ze;=@nc-QUJb_XL^Mk5g!0?W-(taGZrKTKLA3B%!Km=mQj!; zX_5Ec)8Xn2i&P?>5{5<#1dFm3!6cLr6>%u$3KWq@g_AVbw+^`n88Ip&5+F0cGl;eT z)m`fok|N5|Ovy>U8!`8BjI2XHB7T1i?M8xC8gms>4|&+{69%y^KJN8kWzsl<)qs!h z01yV;cLYiJfFQ$~arr2j3iMfNkugSmA|)2b2(T4s%8<7ebVgVN2omk104prvV?2Hf zTD_PUQV|>=02pI$Ji1|PX_gZ~@n8@}(ti93=q43U5ob^tAr-QA6J%#b1rZsWjNZtk zS+y7|3g}a;qN$|rjHYI+&-jp`0TI$H`J}!>L1EcpFANC7%%7s#^%M)(Ou$ZHlPTJy z5I0jE$4JIz#ez&=OC!C|0>T^(LJu-OLPJa;!%vzG!y>bCli-DyOs^)KQL_-`##sUg zUQB{1coJx13MRpt?hSa9S7$Zz-60Kg5y)>a>>%@Cw+Z1`qXqiONl=*yAqaT zaE^%l$5+c2E(9cWPM)KbV4m@{DYp1#EloK2?!6}AmVs@*O zVisWOz+W0Tb|4fyakz91A4XP(oHAp>(?e?$gb0|_bRNMh*Amv3gDQ+xMktaQ8X^QkGVIq|mU!P^?+ZJifydrrLVdGNN!c-!a2+nEz@XCAzr zG2YI9;~mX0BL(1Hz_@45t14vyIeH{8>yc_>s{^5Y9%l)YHa@%m&8d_+$0(6v^Z7Sv{U%XxRmxZ3R29GGiDIsk1H(SeZNcS1I2hiuIb*_tP0 zYj()??2zqwLbhjz?92|?`5z$-KjveD@$iw@U|gLS^haXD2Zx-W4IdnGem1-}l!8YpWV*8|yTGAECi8Ayjlw7*`f4e;$NhTgS$TuQ zda2McGT+yij2&pK=;b~nrPol8tI^frS7;U}ZFAo=3#T^KgY%?1>wZ{AWewq$h@gn| zv)9ZO5YxhFSQ}U#Gau$Na~pfBSIwB@nE>gzuU9~D3oE{%u`wmJ3o#9;Upo^FN^qs9 zTImE-?pkrvL0I&pY2Svuf`$|>UdAl*5~`F@*KhR_+{Y5s^YSO({QakS{?f~c*(43t zReQw(xoqS;sL)RHVL%?VeC&DKVc2MGH+LT1Z$1e9o!0#h2<~-j4|lk-%w`Frh`!0A oAR_QTjCyZ!0y!{30x%n0r68|G%iH|hKQhn#7n78B!0HbG0Omf~QUCw| literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_103/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_103/create_stimuli/_report/report.rst new file mode 100644 index 00000000..2c1ec44c --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_103/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a075 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 103 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 103 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012406 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_103/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_103/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_103/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ff81321ffbd1b87fe074cb9d7a992936c92ec386 GIT binary patch literal 2843 zcmV+$3*_`4iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8d;K^IChe0CuuSnj?&grDgq=xQ5IDtrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM zJAKLw-h#g6H}o&{ukL^XWqJ7k%cK-kFCu z(+QB@*K~xro`w;JL(g;lAdc=y7b6{nLo0}Xh}ZuazlztQ6?KGsY`RWdd$cffcRTeH zN2^y|hkf|$(<*?d9CZI{H&Qog`# zZx{1hn=vsPnLf-UTyM!ws`Yvt-R66y!$UrYkVm;H%TlYUHpnC-(*PX!A<|vT_2cNBCz7n}wVFz& z1uX8E1IP7|5qgmCdk2-8+Nd_WYP(b2mk#1+2}W&{h1HW;vh;N|ju!K|T#od#WTjbd zK+o^JpqI^wf(Qe7&h$;JaeWANzt*kF%DyB&QCnT5-Bse~))6|)*>QANhR$+Vd7{d# zy{B>XDG!&I4>9uj;#O|ExW%8MGv9OuJSGWR-k0kyzz-xEjC_8Yoj$gbB*O35BxZLG z8m)@7FI77-5PW3XyJjyW3#(M+r%J1>&hiXAl7+zns})IULBj7Qeu+0nbKE$3yZxdP zNAJy-6cDMmYSTrp(9RD@-YzcTEEElKpB+_Rwqfq_SUa;c2Ws}#Go>y)h7?YhW%h~% z{+l2xaw2KKWcj76R2vnwdQja{+Y)fPl@~UJB3UfSU#lZ2FXL$AO8z)I4B+0%9?W8C zVKC(CQn|G+#L@fo%5(s}Masg@4i_3%`<+m9AXv zTuI8}>s;Kf%W6`Wa(wXLrG*6_@8(K|xtq)Hh=r2nB%oNbhr794$uoBgxgAj~VK?dD zEEyM|XH187a`}?ZVAoG@o?v_Gc5A1QFX3=^1_rxgZl@rYbd7`v#z|8sxc~|T;2^Oq zl+YxZE|k9D0?kiwp5VcGiZx$n@CmiisEsw$C_XPRc*tOz8U+@e984H|?ozx(`_D~} z;uIMaGK4Lk!7QY%nTY3*3mTni^v(qaQ=54#Fq0`S)Jw7N*(p9@QaolbVlZZ~&tQ#N z3Oq?Df0r&x_e|Pgvd1Ju*C@5INvYv6#Rh{BHfY$9*`Jjrti>BJ7}18!j@WZU17?2D z_EPNiY>EdA_9zYpT8bx({e-n)`~#*9&!HsnXbzuKu8fhVPiVh8qL^LV+^Pk}=#=6y zVz@$sF4|=lYI_BW3v4*1F>-q;{w7GF6Ee|kiZx8v@7oL1Q$ZIj~Y_ zP&m^HmIx?V863!|Slu{FD$$On@6{3B`yZ(Srv<|Nz-!>gkW*F2na(J;QZ0UlK zSGW5QHMO8?TdJ1d7S!TH5XMLoHw^*g@e+u;iqs*>Vouv7>PTwt#nH!C)sgAwR%n2{ zdbiQ~TCFwOYP+m}KHOnUZTH-?ERFZ9a9}!^AJ|?N{*x2IP=IlKh67}0VJOfn3xOQ_ zaJopjs&v~lZ@()+g5GCk++Mvb!)03}f(w48D*L?&=q)=dY!+uyd!-KMtv1Qh$KQRI z3QP-OOb#R*9%lZW9CPHlvR5bS_LJAE+d#L7yj>(hYffbS;qpbPcAmpQ0CHN&bNPpG zotK$aKod?M_2;1b-+~prM@v9zN+8ZxrWH^C5%}&iMU@&V$mwpKX#S~={(z}TI3u(g zZJ2d$jV;D?D3$xLphmZ@fD*4)pLL1rMWxdPKOe)0T5pvrYE#-*Bv7?VwMjAx$$Tp} zJArh%O+|uLB{gyXvalu6oD}SXOJNU>!beBL%-TLOTwlwGTkDyl7sr3fBvq8SdjCol zB`1T&-I~ZDU^)l_5VmJ{% zc5BtWZl(MTDnJhnjr#`JB{#;wk8dq3{KO_gO09IM`esb0b@-bN{&t*RoBr2~P*3a* zbE#L?HGMdD2`&-9X*&h@HNmuN`rz`x!RyKa^&Yunz9#&VT zw`%QcxJ6aC?|$Zj@uqhc4B@F1Mk_-X2aZOTam_1&;nHv=TJfOR!5M5jLfv%2Nw&ys za^zh~F30tCaf_QgEULvqcJ?zigJE_6S49^%5gv5Qo{vV!8=%kM;0+Mu*++)ylUF^H z`1@$dN7yD0(YM`xKN$={-_c!owlt&L@MQ3VpL)gfP~0kR1BZ*(UCpo;Et!rN1~_@$ z^KO6k4ok&>A0M2rEG!tPpP7HVr1nhTkzt3mZnS3QPn~)(B zGSgwxCR;?tBWHY^fq$NnNe249YiC@{k!rZGI&n>h*tp(FVq^4GD3g3<7iNK`(hOC{ zqcs>^yCAWVSp{O*Z(s3bCHxetfrd}BjhaGcXLETKjgS*yF2JKzj$BGDpv#$o^>u*A z+g&{hR@W~DpP|FURoB5NScRYi&2-4Gge9S4#6yb(^g`4mdQoh2Q@)d8$SG);d zG36`1Dc`~k`4(=%w~+EJ{50Q-Ib>u?xB?vaeb{i;OvgZzU0-tsXf3xYJ;*dA5hMx^NSAl{1bK4mCvV{Md80RaOw=A+#CH^k{$hP(1D0r}unO4@m zW?{6E8Nz;v{Ap{xn%bR7gJ6>doig(Xawne?$ycoz9ddGhgU@Hg zoF{KQl4HJsLCtN61s=rSvKt18>WMzR?z5qXbaIHSoPj1Zb;Z}r02wm$(l2?-^6YzC tGx|VP17dBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO5YAnDqRL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=Pi@3u_y_<1#sMMd literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_104/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_104/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8f5af748b4a67efd0765f9df492f520ec770db0b GIT binary patch literal 1541 zcmV+g2KxCQiwFo)%z9-4|6guzWMwXJYixQhbZu||tyjx#+%^=An>c>u;XIHOMHj+k z;hEOaXdZsG2#NrPgP^UuNESt%0YORBh#rYlNNQ{+Fwky-2H>vhqWy(_Nx!1M(o0G+ zV>@u;bRrm*NM7E1?&Trp@aHSP|8w(_ee~yyW=9!uGn$cvGU5`}H!sFRA`5+G7v9Bh zMdO#^xTxz{#BfRqeIpPAD}tn=X`awRFQS+dfkhA>75dZ15u+#*JU}WIJnzS-j8f>! zh=zr}b9%aqz0I{k&-+*s6jD*>8Mn|^1I{Aaw{hnZ-UnD^dnzI4p2Mi5~kY>pz^*s<2mL2xOkTA@G6I8pEVF8;7*a>Vh zMVl1jPR5f2$;7N!m7NzRQJrKsVNqK%JXMs&{e9By{SQ`JNZ;eKunyzOV2_|OO zqG}Az5mEg3YW~utkVMYuv&HW3y3GB3;N+@fIAvjUf@3B)T1-h-$zjbci9JcD`e-!ZlVp!-FI25@CV2I= zw^!p#5>66qd8`z1iTFxcg%TJrz|9gj|66YQukK75GvqFo-#S^Tkkd+Cq20EBeUoA zz|mgq_3;<4kH^4A(m8V}?pr*5Bwc$JWXVwX*7z%-S(RWz~t{ydrs}qE6zq1u=k*z2QHrM~S;9D` rZ;CjK3H*=Z{+oh84vdfx%tlu!$ZOW}w)pn1+;{&4$JI<_YB}e< literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_104/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_104/create_stimuli/_report/report.rst new file mode 100644 index 00000000..9485445f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_104/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a085 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 104 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 104 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.0124 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_104/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_104/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_104/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cfc6e6669c6eea8be12e8e91b1dbd8e6d173c636 GIT binary patch literal 2844 zcmV+%3*+=3iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnj?&grA_61`Q8ra2rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`!h56SM*<>p)b)#=mYdsdKVKB}!-&J7=ed3mM|Y+9NC)B23gW-V8-I&m#p}_kIzm1+T_>(RTAI1L zmHLUJwac!;mK=^@K>5a!E$$5cJv)zx6=yWwD{PMPp34tpm^4^-1o z^Er{%eWV3Q#Sk;JOdw-~zLt=wefTsV`4TkeV9qO-jJVE>-9Lg#rI5yhkOnpk8)L(rB+jIl$+&RwG&5QTduBI zeCU{y(jz{wJ)V>Hs#((J^MbgY-%MaK{<>lCzt^g_I!d+E037%s(p}5-6>aCE$4H&9O-Gv zO0(R6p5J;wFPkd}1sKS4rf*`6>qDq}wQf~b_9gj=+UhFpt`bK#j?iJwj-xv=be6ly z6IE{QJ&mJJdAPiMh>_11w{s7R+x#gy^G#>KW0IhieYySu{6M0?$mgfo>0>KNBK(d` zVs`tW(W*%MQne!k!AGXOYxY92uu4^asYa|mw0nD$Bm=6 z+b=3{^xk4g0g-yEHeK{8?fj7BZGH)7p=gME?5Ogx4Rcq<+L@&}P_s9lDRt>Fq;R?{ zvsV=PZ-Z=sE06|EmS4(BwNX*42h}~bEdi$+d0|T^lEsqzwK|gWGLAMc<&U$&0Pd~q z!7P>*21Bkcm0SBl9KBDkOb0-#Q>B+?wN`1U^>VWYwF0+JSLV9Pe)a)e_$Mv0@Jl&a z?aI~8rKBvs&c&^|tR{6S#|QttxwPct-CW5qcXRojf>^Sg1Qbj5a5tALdFHN|+bI-E z*iHJkO2!=YjOox$E??3a?D`4L6Kqf2ZtsZs5)OA~V6a=r?TCevu8|PIIB5zc7l23r z4iZbTgeJ*!q4Wh8Xnun81P{(rtob^FPpFMXZLFb2@wv$0A%ksd6j*d}Fk$eyOYt`C zKQ}#!Q)E!c5Vm{Os2e0FU7uRr}%_P@tDDg!I;55 zgEeL;@Fb!9UAipYGiig#9+MDVqtwPGrH0288w^I+pkYU5e^#2X7H_~{L>o3cVlNC0 znE5^1OR?9pDIPG`qc|97DV{L)6V`_D512MQhmydf1$<7qGDe<0q5bZNVs>o{s}>le zQ;Nrk;R+49XqQ>2?THkNY&fPda(gNMHb|ipGSO^`HB8s<+YB60H+@T|_9K(&XEF6T zuu^DHIMHdO$=FEo8N*CxR*URDlZ6q3Y0@=KpKX(X!xZ){rr#DdicN#XCT*NDMqYuz z)R8+Fq}ZqCV{OEk(0(tr8he&JpDnd+`AxML6E%jT>KJU5 zs`?yMPoiy>w{tnr2X|kTU&1rEqE;liT`z-3xHXdkS&(mcr~+uqAQwM7I)vvxdEnVc z$6x)qkH1Pf$ioymGN4cr&MFaT z@%P`S0@FemlLHBdhnYVn#~it??A3|7{p9uPHqb31Zb%E=M`oZ(1g=R{W<9Vw_ru@(GrlF5{UEFX$6QN0^fb6s8T}(Io+)j%|F%AA22lu zXM|Rx4YTg9v&FaprE(7z)acd~P~!FKvo3MHtaQ5I=VKUA>#cG{ZA$x!1gci4Hc3Vy znQ!H0Cy-9JsYtM@q$ciN6t+Z~lY+f}A?)E%_~>YuS>H#7>uZ_9_D1ID#ql39Nfjlo z-oI2u$;sexw<36%REZ@vvP7o_5Nk2{}sRX>W-iX$ixthG}(7y-a(i z7)}I`-CA|8TPZ(-3eZDC8j;*6OXt<$63ki$1D6 z?#k(2L~yxMfpZ+x+-J!f0Z$8tyO&Oc$t}FxC`)kvf0R@j_FUKEZOycpIWnqe=xX*ymQ z;N*4ByZzZaEENZSd~m+Hv}B-uX7TNk+BYq2?PGKA%}<@|DbN zLWWGpOovUIY!Mlcobho6{&_|w8R+}2opCWos$p(*;+hVzalMno#^|e1Ci%=R%mPiN z8LEy)>oB@LC$X7X17g|lUh!ll{1mH!hEKDNnnGr0b9ohwkP~1oz@s&eTuLpV%b9_V z4S>koT{{ZaHZBC8p~J&9*TE=QgP;S=bjYveV!U>I%qh$i;hKDf>+ls)zQUXGEnJgt z;W~T^Dc{1I@)fViSG*2iG36`%IN$jkGBPDx0gn4VY&h$tW1z{duQ>y>p4${56lk*0 zc5vEP6gM_l59IN1m^%hXhil)x`r^A+De-x6f`{Y8>V87%{_$q!@(^)#|9B$0hWCes;*~SHsT^dHrhm$&d>b7`Q*Rjgc=)_{+pNU%9wtk)0~>H~%Bs*8QX4{$^%c zS^JuW(Pm}{`z7+Ht;K43Qv!+cFG;}jO($4itGEt=O%`;@%p=I1Jkc$yb2{YY{05)T zh&fN*cqGSs1B05|E{Hscy%jeM64euZdevt`59#C(SvdnuXzGfunE^6n=%rusR^-|D uwr2E!ss_Xa&p#!qpgwODxdJD|AhK?Q?1YDm=IDrsF7AKA04ff-8~^~{GmO3f literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_105/afni_proc/_0xb89f0009728fded185114954fd09be0a.json b/Afni_proc_through_nipype/_subject_id_105/afni_proc/_0xb89f0009728fded185114954fd09be0a.json new file mode 100644 index 00000000..53d59566 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_105/afni_proc/_0xb89f0009728fded185114954fd09be0a.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "105" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_105/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_105/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8cfea29c8559d0450f6e62f28f7e78811b8755f7 GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ z>t9g3dG#dhMI>aKsbP1}zs>${83O;)wqO6v18D0W-PR1M(QiR8C`x3OILJbTg#vSJp)NwUZAj6bvl zyb{n;{Sqr`jU(ECB8D3fT!GsY@hEzrlH4v9msQKH^8(f&VmRB&6T{1t>qAzYY?y)N zYhdGbLR-c0h`@dN^kxi4^ZF)+)7`f*JWK{^%ip=80y9_F^Si5S9J}fd(ZU%-_W=L^ DuH2bF literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_105/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_105/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..223c4e925e55e3c6ed1477137ae2509a56ef95b4 GIT binary patch literal 1293 zcmV+o1@ihIiwFpT%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasG-+;4n_ko+#KS7Q zBvP22O}5ztgis|^R8hi1QH6>s%QJIk?X1ThY|m~|6bW7`D)|lb06&Iz{uReFvlk*E zMPgRk8T;5i-#O>=cYa>}ovpuDKkg&R%Zn1Cl9wR3gb3s?yrjy&c(;6tZ~vR$`^8`S zUAICcEx@~VnoCYfty1qc2;-osPT7TbA3T{Fh-F$;Lq-}0-rXQP^X~R+XGG)vp?7Nu zH9#`1y<3XByO}DP^I`36Rj46?X$H3^N{@1(CPcs(1VVdu`t)1xHY>}8xiWc&OA9)u zDO_ERM-r<@&ILkR$*C~--U_n_0aB|pMsd5#Q~}*H0lCsPL6BjA;csy5TJPxaxF5$c zMjmFhvee@IQr}l@9nK*|KuXq_w^9vgBpOOQ2SHd}1$U{YhGkVzHgSLaZ+Bfub!mty zL6T`%uoRmNH<1D?Q<%qf%L_1;7NvI&&QyXCNp2WqBp6hM-j*KYrV&6%xGXDc=J9R| zl~O_K15*a+Xa?vD4--`o_LgnVpn^P*cQ7FknA=-Lap`=;*%r11_oV{*?seFr&W~Ml!?L><@O?) z=x}rhdF^Q>(>lPJw%lx4%3is~$eyWcTYa)z|r?*v+fsl87(I{5G++{j=KQiRN`XWP}EcXsgWlb!0=FvNMtI@f-MH&Cv@3NdRcE$v_ ztyXnrHn;U8!#>nA_IaHw>Q);{7=P-P!)hcOt4=XIw@HS|PBrvb95#6C;b|B)N7q5W zyiU;n)g!y4%_eqAg6ZroblG(j6dmqy?bBSy6t~LIk>0tDU^A-Hc>PY@I*N|21qcV* z3v$y43dVltiXV*rR+GB+5DYzc-~F#pf+CxiN_Dq2Q7y|Xf9s9gYIe4JGY7*uOP$3fAz)Re}v~xw?<^`GGt<-Zel1%K|njn@kx%I`DAc# zoM({rjvx1W{gcQ2Jc~~fh$(7Zy&k({Tfc@SL)Xa;`bioe4hBi@=qMY+X%7Z4=;tSc zq<;+k#J|NK6Rg1hi~;^L#_|7*jox~|lu7_}IqPni<`ph8IQL(FUnS8$ux(;aa|r+d DI^Jev literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_105/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_105/afni_proc/_report/report.rst new file mode 100644 index 00000000..c740dfd8 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_105/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a043 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 105 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 105 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073479 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_105/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_105/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_105/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..321172e0e6bde4684f1497c2fba632dd76bdfbee GIT binary patch literal 2546 zcmVb!>EBVPo`|N5l#ItnqkhZtl{; zPL|$1YdVP?*NG2>Nrb`>250H&ZsJ=pHS%MYu0)9+J08wPOX-Ct&@p1Oowp`-mhOq8 zz{BEO7Z1R@zUZSUBxVp|-wd4)yN-{ESR43`8AgF+#-k`mh9h(4iD;6f{}x-Z>DXpb z+7QvPBKTn^5z75&Jo@Lq|8niWub!nV*tZSpPWmfZl1qi6Tqu?e>0z~0sY*qmB9$LX zQbyIrP6Q*Vn-}z_il$}hC9&`LBBXKzDby8RSKBSKS!>lAN;gX%xq*dTG4Y*g^|2Ux zp(v<3N`bb;qFmlA-p^s)|DkTMzth&*T|?*}tm zbaim>vEyw!{e%WqSM+B_yJODt41VN+L4ZnKHQJEyYq?!&%}0KarRO^@>REdIWHo^! zTDvg|dX))3r+GVG!ueEeikp0|@v;MBS0?DtMLv}4h3AH*K7ka@!gBhRviLqOl!Ov( zz+nBQZYa&Vsq8B|W=92|E)?Yrxk7`b`D=Go<7JlKKa)SfOJdkoh5h+lD2Ydcrq-`@$hJYQDkxWEz?0v#~mStkIEb#aoA%@vC9U>Qw|>m3~w^|krOh!KsJM%!*0Z3 z9x~J1j7N|QHapkoAIThMIw!Hr4Q77f{sKp#x4>_?6i+yeIZQYlaTsx-z#+o?4_H`M z=&%NtJuV>@Vy;ab<{FtWY;zbBn@u}*2J_N{Si&KPF>82yk9VSL$c^uN;R1(!kKrMQ zLx$raTHqP=6r<)3p(He z^};g4WqvxYF%J3*{61blKjCKc7)FG}A9)-cGcyC%V)|o;lk=F_9J&i=GdQ)_Ow)y+4l_f+aJaw`Q=gzQ zr^4hxn2<$-gwq9{l5lX`_#=FIw;oE>Z@)PPz$o7>aNybuN6v832vHO-8WDcGz+@6G zaO^Q`hwp|3+ad8u2|qz%4NhuMfsZFA+WY|cXz|_9JmDj>2^!;hdrl2@dfl$lGB|3` zXyr%g#jXjbKX8?sr&ucxk}G>^*XY$WQ)%sG=~t%|A`Gn5PG-aybPdJa1J;vso8?VO z0)BAgMeQY=!F98)>K&~HB;nGW3KW38U1JQOqXS*MbMP9@e|q3~2XDUn{eXOz3+Q1A zf;C_$xz8pglxhpy(s#Ow0<%35gJ>w`Tt_r;S~uVixb=~XGdylCrfXiWk-&0xrq(*>T0w7%4{?{ zW~XKVKiuL}z2L}kT_lEXGIV?*4!y7d|MW62lA)g*k{Ejh=!%i+VxVK6&w|tyqt{`1 z`$ZKJbc?5PJ6cVLWm~3%3w~xS`}!34mRFEBDs!s6s)2gDL$h@I`|lS7)5V0)yNEzW zYrn~FIJ#!+Xq4T4^GnxnZhJ6XA{lrIvmRj{x_02t<)#1<9`Sbbo!SsKihgsskFsG!Jg{;wuB{<~( zS+o~`d|)#45g9BWT)fU)P;by3qd!wSWwMHJWSb-2et&E3gg z1VR*#w$I!M^DVsGtf{d7zsxI*ghAkn9&%jnI(H3boL$#vm(|tTR&Bh3Eo#EP`#%dN zI^khFf>S9;S4RPfeMH0f$P>Zn;%GHp4WZb<7<_hQ&GD0Ip(1Pu^esh_gn?Ds6s8X< zW~E%1|4f{CR2aglSh7%pgKi~^@Hl_``Q{TIe<05hww;K+@=UY8rWYejJbH+p4+ew0 zGfpDk3gB#MrI+Ajh~l4k;@Kz_%QAe8R*qk~T1h{>==fn0ll-~o>R|qSWs(@a5&yFB zU=0>#-3mMpj^g`kQT}K~OmOM`+Wh(H{+f+qL`Cv!vckMG{Q41vyvXKC|OUfP&Y zWWpFD&#dh2$-=;iNbKSDM27Fb%Oq&(QiIYzfCQBILx_ z)KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR% zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zXz?P2>z`xW~uJEUYg zNs%?3D+G~99-i}^!;kdGUoQOd&((AG$v@{TJxHOMvJ_&*p$U9oUR(sAiu}ShzKh?B z#;?U;QP1ZIrwJ7K6<-3?K$K=l7PBH>CJ_Tkr5_y>`KOOV&PXbSPjniD3jWf_%EY z^+S=bWSYh5MCVn;HOP?qaMBuG5-mu`V#GBc(pcg9vgt(#;A|%0B)G+Vxyo2VihdA;mYE6XORAzE zOVTp$JIBMdIF+d)A_Y#y3xtcZ65%A0fQ|$fa|w$GO4B4Q@|(ND!;Cmn5d_2xhzz66 z-NQ*kfRr$vW?D`2U5$lLV`3fp5%|LiwCf4gX)JWiJmOJ*2pnUbe>@oA%A|3ItAQWi zAs~vlZ%atT2#8_LqAW70`enz?gcI(N$YZvz!Erhl4nh4&zryH>E{N1jouqrHQqhB0DiEL1uh9dOcHS z)ncj{qED%gjwE$^JT>D(F7`MXfmCM6r}f>F43{1E!U#C!{t>EOOR2=ogzQ8%nW9Y# zaU&IROjK-EEXX9aG|J~XNSOUm=wasjWREh;@DsOfSY%di8ocz9<;#iS%q&E;aTXAQ z7ejCaopms;N+CKSg|zvIlnd@eQLU%rQlD^E``+? zo+GmO>DA)7a{+|T@w3J5@4CvoUF77tV>o4M-S}$R!RJn8?YNsxHNi0xoN|~YX16*i z=Mm0oTEhBjRL9Z!7{t0$LtuAb zAGS;;t@4{7>4$f}fAZYSzT0*Qo?2Y1rdFd`vn2L3o$8~}z)wgY)n4dY<3#Z4YiFk> zxB^|npaaUddB;MjTEE|Xeq>5#M!cO_@OCD6J7>k)oe^($7QEdF-tJlP_GZM}n+0!g zg17hIc*k?hNC|ioF>aajs?K--`;R2$1E{yxdlD%Zv8b>`e@keH--A6|| zwbzGVygr-&ACnV3^sUvJ1+~^+citT`uGabu2j`lQ4niA8bTDN9osjP7Av>ps?939f zb9%_`=^?wbgzTOkvUhsO-v0<`_%RzBjE9fJ2IK0ipg$5DJ~-s;Z1~`iv$Ns7A&)T- z74&03%$1Pl+4;PLS@~F@Vo?BwvMyutN^U>#{`g~ zuG00|rr>~wEXttDBdTP#je>h|45!GyK7*`p8S@s3HB{C#ZUw5{cJFt4EtH^yXo+f1 zjTIgtsNgo5-DaoAynK}nxR5|#--px+skiy1Qs~>;nkxE5Jqn`;^2?Rvp7iGn&#D_7 z%@;}?ql)ePg0Vx56}{ZXr1BLq5PE!d_zjySO55Bv&C;n&b>}Rpo_0TMk*bDxOC(st z*2!z;5{hYQG^`D*4!Do=xw(zK&6mxX5}8Elxt%Ye;FeZ=V`KG*)Goy|rhfHAFf75P zvTBtRRJkkVO@~l9P^Ntg_X^o#c=0l3nU^rFjk4k#L)& z!Mbd(SSXi`ymub@5Z(iL*zUM+uN#2p2JU^g+jTn+yzqhVqXM_~c!#UXY?d&J*qb5> nBEbJ)GJI<_=%oZE literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_105/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_105/create_stimuli/_report/report.rst new file mode 100644 index 00000000..72c172ea --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_105/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a043 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 105 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 105 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012343 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_105/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_105/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_105/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ad61dba91367d7393e26849640b2aade7862fe29 GIT binary patch literal 2843 zcmV+$3*_`4iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0Cu!0QM`>#*6#)XID4VJh(;`J<%r6t5El1K|KwwEi!dI{WNhxus zeasBrg1+@Hw1268rFTIRyOgZNsS=GnJiB}M-m@1Mi?hJrm;d>nPnVLv=rhOk&OF4K zPJsNrrX$StG>kYLdY?j= z?jtQgDu$S$Wda!^^tFUc?W^x=(#gO7upF%*$505T==Wky%x48LD-@L6!%}{$Bow%< zydV}I#Kdf5`Y@Aly&*rT*6VR}i|?5Z5BVHI9_6YmORc8bC^yTsYA24qvRqxW_|P#Y zrAK^VdpsxYRkNhc3u0kg*i2wD{<>lCzt^g_I!d+E037%s(p}5-Fa77Eep9^j`Xx-rCDx3 z&u_h;m(AtHJPZh&>6=*N`Vi_~ty`6qeMx?zwz^8YtHjZbBXpRvKnB6{T zv?|iRRPD$>@R4cnn!S)LtWuSqDy_CU%QNsu76uEfRwShb3BQy0CEgs(apUOi_KQj! zy|-9WK&0NPO&7gNJ3l0On_t3NC>r7(JF2{F!`zjzc4lb~)a;FCN?m#kDV#3L>=g_A zH$gVfV5YEqYSeDL3!OG`f9&6NyuHz(}m3nj}*K(S;GcXPRtXYLkqJNbMGyGj36 z$(VzlF&)~;2_>DuuAg9mV0-Fzd#50jaJV}IgWY^?r;sn{8VM1Mlcrd50Tc+pL1I}b zp-D1bEPcTRnx9~S;K6x{HD71&3ANFvjWyILJ})qM$Y7fq1s0tgOc;FbQoK$3&rOfw z6d4pUge{-JETpcPi06(3j1gPnKhVXpMW=W_tE@-)S+Wl-#!gS6pkevmeN zbdq8`_EH?!6dT^@AZwU7SnOc~gnEC`f^;}&ywGMRz^26xLvw*6w6Qiqv-V6H>~%Yx zYExmPL9LlQN^f>lc>04@xpzUjf*^V4xztg*<+@sJK98eME*SU-G^`O$)iKyARrNWj zo1UrtF=a3ZI>0$hdYd^?Vg*KrSYB>4onC01KZ2Oe{v!iiZG7PaDePA3R2-uhzl5)h1c`_`B~? zfoUO($$^B!!_1$OV~$)`_Uc64e)4*C8|W61x64FmEr_h&UA!pO&T}{jKu${nCp>`b zyuz#knsEB4KL_3a7Odz!S^`p20&%`Nt$+fEz;~Z1s?<^G|j32TV=E8KKo^ z!>qgOY%y*?soaAFHM(^Llz6@RtV>)kE1fR*`4~pjdaGPfo6^1_fvQ!iO_EVa=3BYh z38d3)DiW+Jsfl|Rg)Nchq+st~2zz)GJ~|p^*7uR&`dTKxy^%S3as0Z0>OkYq!yxc*iRVG8kh1B!2G>t~LNszfLXOgS+FRmBTEg(EVOkwiFVmhWh7$o~ zw^rTjR?5$y0`$<(xNm@6a$_9)>#e1wAK64msg*8N-;C+B4u7@5Uysvk)BlWST9 zF7)cUrVke`!36?1ZKnXgCYW|bA6z~-cwIW6-X(X8{8VbIwR-DuxgHPCqK_(%yK=f0 z5nQfR;2Z}v_gV5rz|(@^?xho9atkjv$`aiFA0?HBJ=e8(TQe=@IClpkPLJ!;!|Lkv zR;_&vx2OvD-A`OF-t^9bAv~4BXm#k~z|qJuu6RW-yg6KrRy`-HX%bM zWTwNWO}2=PN6z>-1OGfDlMM8I*Uq?@Bh@gsI&n>h*tp(FVq^4GC=(&G3$s8|X@;uf z(K?K-&q-`%)__>{+gChU2|vYZpyAVOqo$DA*_@!F5pn{|1$eZ^kxQusbU8Dyu>lZy zyK6_m+Qx<8Gjw>k<~kS!YY=pxnGX52T#VO_k2!^zB3_fPcpbiC%2#|-zWHnN&0mLa zKINN#Q@(|3@-1A4Zz1Jd_;J4TIb>u?xB?vaeb{i;O~*i!U0-tsXg#-CfKZ^xLfgS< zU$L;U!FnK%hr`@4I67SW_SF~PzDkMDixWH?Csy|pQumKHGna>mtNX_r8JJ5#W`No} zVg^DUUkWK)9a6kHq;?*JZSBK1BCuIKWkcF#57XFWrq&}`!4aCDQR1L({o09&8 zs^MpcynZ$O?2y;5hMx?%P=SH_Q`;E%vV{MV7z>q)TNc@=5`XhQvTfZz3hr-arj@m? zSr~0*hOl2Ef7)8CrZ**!82^$4Jl}MJ^|gxYAlPI%r>WMzR>a(GTbaIHSoPj1Zb;Z}r02wm$(l2={^6YzC tGx|VP17d>bpAuD2pErtJo)cpbS+_xU!b3)LbVNiK_doPtm(jT#003d~jtl?* literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_106/afni_proc/_0x4408790cf3576eba1e3b44649c35a937.json b/Afni_proc_through_nipype/_subject_id_106/afni_proc/_0x4408790cf3576eba1e3b44649c35a937.json new file mode 100644 index 00000000..e61b5c6e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_106/afni_proc/_0x4408790cf3576eba1e3b44649c35a937.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "106" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_106/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_106/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e3d37a9d03142d219fbec7882c05c483f8571f95 GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ ztFnUP&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMe=5apHWCl+uU8 zeX$|c>3s5?-BL=Rq=cp}G$juyVOdF|+x1Di>h9{!P6@Oxp@Dtt_M!b_`riMlvy$$k zhJv9wIB9owXMQvDo0*@l|IW7Fs~`K3;N?XLLCH(Vxqtw~*uR8KK|6c>6yNSQckqjQ zFJYio!zbs&-JCv+gun> z8BO5wX;ev!BpJ^U(t1X7jqe@5ix40&QlS^OdQ2A3JIf)H%ESoLAJF_Yp55#Z2ggwu zBJ_^mRnky{`)iS_>=v9uf`Fu`G4CV_P)HP%s0Tq9Re5uXqMD^uQ8s>m{BLtTK~<@V zEJ2WYS}+yc3@?!a43ikgEyD}Yh8Cr>_s?XE9to})q{Itkh1S-N@X`dJBwUo0(Mx}K zbD7Yb)Cv;@$z%cTZb40%OOx}M#59?JKwH-ykH?sqGOsWj`0)$@QN;aFK_RC=JXaRs zXoOHu`@5=-gbO8czk)Nn*!Qo~l9dN{vY ziHVRiL8hRzPx&&wGsQ9O$nq%&Dv}kd-6^TU5<+$&n|#ogfw))7JSRH$8A~fgYZ}?L zLnO@kG>g&mb26hGJ$%0(dKUT2EsZx?D%&Zf;64#;;cOs;IEQovo<`dEfGPN~0+Ar& z*ZRnMT@{7T5G~6(?{kgo4M*M}`RlrxQY@&A{$Y4B#4^xmk}T@Y*}b--EVgvuOO%_7 zV5Yok@ABr8N+h*|i{5ghWhr}U@64r7{nqmmlI5|RSt}#jAP4_SA?sr9_7jQVMf#|# zKv%iZKDLj#x{A+`mXErgR(|W?(@qy3UigaiV&968ne}da`t$A{etq)Oo4ugn)P5^C zn4fAd1>W!vSG4@9xm{vn%>Le&Qo!Cp2jkdYclMhrw1Jh)-g46bEy(c2i^HI1bKCN^ zSMWId{3_Z#)?Rz9mm)`}kS?_o-@AKD6Fo%Vx`|Dq9}Y3Eb8nsf?8*j_tJqj*-b-~D z_D6#V72hSqC?va{6Pyqv@Guwzhpvk4E*}f2fWUbIWzC~^_GZ)P>Jg>gE4R-w#@HFl z!S1wOXCbpYk5imOeQloA!J>Afp@ep)_PRffWMkDSx@Wh^Sekhc{S}uD-g0uNn;b1h1`@>;63X?vJU=(F1 zqc}Q-D0Xl0$8uKSf64&=8RPhW#wKqaU`Pc(ihAeM4a2<7MGEKc>+h;K_y?MZc^PvF F005$`kOu$& literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_106/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_106/afni_proc/_report/report.rst new file mode 100644 index 00000000..37ca688a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_106/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a040 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 106 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 106 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071412 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_106/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_106/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_106/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f4bbbab8d3ab88f882e04270578561aa9e3fddda GIT binary patch literal 2537 zcmVb!>EBVP{-W+gWRBr^%i?_FXK$b?^|p z8^|6C18VvK_RN3;*dZRKa((C#GYEaljK-lKkH+TQ6WOHk;4QWylh|euRTMw(9MAQ|YD2L&vv}BgY<@)gH-_8_1HnqvTjy zE)>hv!o3V;{U7QE`#T-2(=(J_3vd+1*zz4eOp{AbRNdI=w2fW|ytqh4o*!a64j|Rn z_8U#JrL_BIx2No?`)P6>dR?4@=-DV;eW|3$Y9XJ`Gf77`+VvJlz6hd0E?+8^pras> zkWeHIVXEuRzM>nus{X|6^o?%cNRxA~@vFR>CRcP2*89d2Q}66NO_Q%>SXnuyIFu{Z z{DVqWeuoc2;*Dg=6129fYtO+BBpQ@Ld7hmib+RPF@02jLi~FrkL)}%Co(>K^BJMUB z#4NCeqCYh{U2~CV@FNQh0#q8R(Sd|t$?P&~9`gJ&Ioo~SNRz9_s|g&@I?Z{|>s;Hbn;x@}OMLJu@`*F{E%F78z8^^7|-Pl1i)rgY_4>p|l#N zvajrzT@`#fS14{4D=b)+zfMmzUZlyrQ~8tJID&1J+h5Fu;%F>sYQ3{tOp_aYWqJTQ zJ%umLdb80owR*b=wF0}QuSr#knM7Qt5m8{Ka+3P>?1I+=UrR*Ld_DeA7;3~ zusb(f-6|JqG~Ql-(RL}nRW8*m#HNU*S+iL40hAe_QKnh0;aN7kSo>CrP?+HY!=u9` zMxiC(w_FEt9cPR;btb6n-}LlSVjL^g+l!%iq*5pvVQjE9g5 zKD*Eu92N!4b&lhrFqr#=2TL3V?h?NhQalwf7BCfXC}1Rn0*46q-{)aj0pSfHdqP4i z#9f;b?i!tPYzr7un@>9-!$oOAEWt>?m^WOp$350H62=eQV2Oi)%kfCS0msn@E%8jy zpNTqxeZagCc-#p(Iff6puYyuw&A8m3a4g1lEb5}5^p4{x7JP*U584+3b%Qd;WpO&8 zG4TgW{61PjFBWEVIYyMnAG!jZa5F>4;`$RJ$VJR;j+`a5Ih+j0rR9IWGz0Efa4_`I)dCSBaVqJV!|8m1f`%PU~b4Cjg~m%>QgikRJhy^V!CY5 zV7A0F8Vrvbe}XUX)`NWQ+i#8lFv@pJ>^nBcAsHme>u=V?IKgq6uEK7t~;<-|H!DL!buDc6OAW@0oD= z16R3zg0%u6xwNPDjDB4+mG)kme04%0#K21JcutH#*HFwoU_BYPS*_;tzz?oHufKpZ zxM4O_y{pxMBwScffgI4cE1Uszb)bv4UcZ9#pB;Ga>o?#1en`K|1ne*c!3Hpt%x9Ak zO0^Ac={r3|f!Q9)emIgdt|J>bbcqMdj9MYao?NOFt5&gCFdq!>BeQIws)-5@ie}}0 zrBKDFv}qSNAqzn68fuR*i(}j_V@GOxCrxgiW=F)coY)3>b-C4fX*OG3vs*WSA8rY% zu75}z2g!jGkBCR*ksIXTpIrvVMd+soG{SBUx+3H_80gsN^B{G_=y!SEeo=!2-4JQq zj#k%U*;X0hf}c6dzB&WG<>rc;l?Bya*Fe3~Wm&rU{r5|P>0nCPT|}bejo)N999=VZ zG{$bf`Y^kVEQitCRYtUqk*r^yTok3Z2NwazX{{g??!!8-2~j{3ZXenn@cuIp(N$go zYFhX8@ zDbM=M^s3S8gPohuV``mx!)&X&h6=3KP}(e`kjyjr#SNs_ZyPE^mDR-clf;%$b5^jw zJ2CC6*YTs*Vm%uQ#$P%1qrjRYlp&;BmjHws$)Xv)|Lejo*%= zD4;c22CBl!X6W0}FtZ7>vAdzf>K)9kJ#E0{f!#D#nPJ#c%=t#$sGD=KcVf><^L3?T z6k-`Z*HM7p$#}+Y(R41Y$rF@$__1zY9dj#l$sEIt0J7UucKVI_GpGP7wvqH6yvsJm z{y)yFto+1Bgq2$DMD;B^o!8;d*7@`K^uhFhpod!$zc44HmW8bGu_ZX+0A041fPP>y z^br{>A6&dnT~M#F9iu;0yJl1CJg#f$_#pYR@wl%qzeNn!8x6R}LCxLDUIYRZjkizT z2(vA`+N!It|G&&CjRwB&$Sxv|aGkpXGtRH;^ULb`e5*EJ!WK1Q-~FEjlSyz8jp0;^ zll8GrBM-4KKJr8`K0jVh)&nSZFb1EUqDH)Uma9mc5_?O@=cS=ls!Fr_6|+*#Eqx|;ivwS#P z+Q|ht8N%o%o_I?4^CfoJt{uH}wc|l@o_IkV(d@bB@^JBdWzq<~5&yCAa03?Rj^(>9 z9L4uG!tBwEn&8sCjm7iRy$u^hh>7mjE^fddaoJ~pb+gAPI6pG!LVJ7THlW-ef4D8N zETZVnqT}w7)?$#vCVusaGryUS4npEZcWyU)58u9f5dvKdPm|WCytHwl%!Ls~u36dJ zD@sEW(#XLR42S(C!JjnIKgBxpRbC8(?{!Ef*yh$v_IfAtDc}pawg?keyTF!h{U};S z96ohIM))$8V^b*RYN;$kt*`lUlr4Jl^~WAe18lJ~v~d7if>=g~NQ7-2r2Gx@O5OH| zS)h@Y<)oc_W||RGq(@JwCTziT6{#c@Q>e6yu(A{EANsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+Hrs2g%^J#c7(tH}8MLw87 zNuOI|>TeZ^PhE02eY~>trt13jN3X5XwH&!%H(3|3637J$wJ#Ch{dzb}#|m`Grxaiu z6KPvhN|0Kz?e^`yW4nDF2IuYetk-F`U;PEGk-w~vg3BA9K+Z%)86p|O3{{vQ;p=pt bay-WbR(>IZAp9IBe%p9=I@N1A_y_<1RFWIi literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_106/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_106/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..f15051d1597874bcd76aa6aade9662d9f3fad348 GIT binary patch literal 1535 zcmVQr4k^&{qE)wSF z+0B#F>$KTz=Gmf46%e1vJe#ZM*=0}gfb}izLL~Y~t7xnq2ssEMaX=y%LWCrr?(Y1M zXDg{@kvi3Rjd2Y!pdOsIMwdhj60it)%?C76_`Yg-kpg&HNDO7Q5sDZZ`w;{}Y8Ocw z1I1pU?P6=Qv(;@jk@~Xfl|o}sNWPn=*%BOrhlB*ToUfJNuJ%>7cNG`nF_%tW*0iFYj$9*u}~=!M`7#?)@aR40+p5p#)4y#a8`*y=}M zLOR|jHaf1z{LS4Ly*cW`6RywlHs!BUKj$W+?$fx^@K{?OsGy&lS$en5jPVN zMMOnr#r#xKE2C_#jeCSpwd~>`G9M;W;An zpI$9qxZp$JoIG3X{;sOj-A7GsI7U+@*R`*f9enPV)=q2NDJM8)f>R8$*z8s(q1>m+ z!N0_J>_8wz>Q=Cx8dh<%IwG;*RFK%c*T)SL zNu&5CDEh&@@1Hz3v+p%q1WzrlRb8uLrCtbo5>EM1tKlakk18*8rFIIu{My^A2(Ca^ z5VTJjH}6O&Rq6HW&!?ueXXM+Sg>QSzw|!o|of-LdX5rfz^X;6MZ+Aw%-C6i{$9%j0 z&381%j1+{ok>idzud0muaQH}4-iK;)ql-|Uh|-v=ao=XQR-5)v#~+!!W)B_hRbC%| z@%ng7d?Zfv(6d(SmehK0!+CeexLWVk9Gq()9i%owbP%%l4rJ?W$oAQg?O7n(XG3<* zhV0A&**P1sdp2bEe?S_2%%%q8;UlTRxH>QCkEDhVhMZju9}GFW8r}{B!xV3%y$TBCD^*4IVv9hK#j3zoLIYnp{q8|vP9LOtt#*dS#N@s>z1iH+0O z%q1+QrKw>pusY%%&gbSf_BLBKV@jkFOV8bG2@7s%i*IbKO_kb3F^!>LI|YU*xKd=T zbb?jxN^#R6RQ8o=-^RT{4j5j%j9Kc&OlwnJzs(l#J{FU{n?L#H??27+SGGvF4bpI3 zwpT1HmrZ%^xOB7AX$D)+hSmfBA#C0EA8xg&>rxkjRtv?mYVGk3SEku4VHmPEdFY3L l|AVmqCI^gx1Ndk*x=LYO^H#U{w?C$C{a@RnmCWi7004W0^{M~> literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_106/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_106/create_stimuli/_report/report.rst new file mode 100644 index 00000000..5f0eae47 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_106/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a040 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 106 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 106 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.033148 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_106/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_106/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_106/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..24d0744a2ddfa55f72bd57e64c2082355517e7fb GIT binary patch literal 2851 zcmV+;3*7V{iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8d;K^IChe0CuuSnj?&grDgq=3kv3H&rbUY8m|rG9TaKi`fWVT3gs)%$l2YPM z``8)01%2y7pZeIJ(Ld3L{*6BNE=XdRlI1v6qOpf(ckkYN_Tpl37WmWhU;p{(Qv4Tw zW*hFAi#Wsfk=Iu>gt?xI5r+fUbv!=`@6_fa9fSkZkG_vK{~W!HHo`S!ggk6Gc2s@1 zG;?<|@e_sXmt6)og{xj*`-X+0;Zk_x5ey7zw70df z9)*Ye(6JDIVxm5<>+!bgxma;rWGk-WBGa%D=1YCsP+ZT^6o2SB!C6DnLMv~NcE9|A!cA2Kt>NdH6~O2>hJ&kSL@$5{}HYtTbBu^@Yg~{$fdJFIxEVV z2gTfWF)MQ7{X#+5j)>XF@L(q4dP90#sn?_MCf_q`9`ZSaJW3Twsu@uaYKhJ}ZcY>{blp@mCFl|Gied)sZWm24LR{kmi_<7lrRU zu1WG{8*7%drzY9QywlaA7JG1`9kJFzQCWNGtaOGJSGWR-Iwam!4D)Fj68mtojx|> zB*O35AZE7?8m)3|zgFo;K=7eq?Hav+EUa9Sp2)4XGRrgYh!+M6tdwhV3le@i_Dj6k zs_jJK+wJG&D12|Rq<~1hRh=$+jdp%W@;1MOvrsg|U3OG{(T2IJWA)5bZK&BBPvv^; z5u|XsETfkf`EUGmj?0k-OqO0qa-~sLDhHK4rCkF~H?qREkSB{J`D=A*@{1_kx|Bc8 z3VgV?(g(9xYTysKdacyj7ozZedSyBQTAd2LG;7szL#daVRj3uXb-EJQmG{&4;le*| zk%eE%$y!&cbS@=j`Bg4%)+HsbODQ_|&&tx0hj%kY-Pp}!cXDFUv}2GjTEpE;rsx{G zVrD0oD`F?^-!AHN(9@?wJDF@zW3c1JI7_fKbz9gGvqc>2&cI+dm)Q|>MNK6k{BhhA ziVgsg0PM$>Vi8T^=|b@f&R4w{X9*shCs_3~2A@zHmD-p?mEv=e!9xaH)W|pKWPifo zbBE#r?LRkMiW8($$PhL?2D6a5W+I+LE@*V7(K{CyOl=miz)YsRP%purYbE%EN%5G$ zh{2e_9)ne8Dexqr{2jV1%{6F)$sUssO{LVv2Bn6_6zdE|Sf^n}Mt@eCuoic~U_=`h zJ7O&i4Vd{o%T2J`vnU=g*rnJXs0p4h_7m2I@ei0bT$_@>qXm3UxiUtsHlh8_h+=ka z3#%3wqf?5-nd{>D$B9Wc=>id9V4?^z5SQ8#^4qxK_% z>1Q$ZIWQBbQ#jFRq{&!M@EOBQV^)i-K9hwJgK5%LRhw;-fP)0~O{U)xRf-Lr#RhGh zGDdEW!PJp67$n%E=3{lln9zR54RF%H?j*qz?Dpr4Kf=zt^B`0F;`2EGS$UdZ$J8nI zj6u?HRnJcv9y&=d9=i$lEsAybbdc5!>@W7P0RpYRXhAw`G+t=46JXO~hoQN^5!zTC zp;>z-4feX7PNgX`(xBRmAEhfD1)lz(RqkGpt{_O>c~*Gjd~R@x;Q^x+O;YB}eIX{x+y1_Q&!{J?V4@SmIrh60S^GwdTP z4MVlUR~IizrSl99 z0+7>UmdoCU>%7XW0-A98s6PYU{}!z1Jz4^_W(~yo+Oz^h5P|PLm6cjU0Xf~R6U{%> z(H}5131@^>qYbm}Y_P?+38iuu7S!n0Wl-Yv%F`}!y)1XS;OAo)QR=NyS!vexR(wr3Ry$fLvkAjCs!_>w;(j8AtHHy{>qudWeVZ+IQ7c9!rm5O+;SyXRfRlCt@GF9;SMKis`^B8+e0G$J7Kk#hLfoDrIya`VR&wt%3o^5fv0DIEv{B>6| z=!GkW?FK%MU-!J*pS{CUuE zP3^)g&{V3fXn3>%qZ@M)Td8#*mj3o7PgcTDvEr-vG~KAmWOh1}RnQ38KIVKpTIa~6 zRDHUf8Q9zeh}_-vBY%DKLhu&M5O%uErk$yc}zUm@Wu zyeZ$@HTmYQ!#9`k&AlmK@tS+ls5zT)fo&gYPkDd943-1lI^*)VJ!O?Exi9-xiP zmI$FhlLeNIlfJyTxygDUkB7s|F*rJ0|Muk<-@Z(U&x;d09LHAoVp8{xw^Emfh^u?Y zn<P<=iMAh)4Lteicessv|SHlm6T&O_b`Jru$d|AT3kBzhCi(3}isbYWgKeBDz zJM!;srKXj&ubLQbrG~IyB5&GStfn_55F7uL1YFOs{f+gqV|Q6suTFJ>Ipx+>a(GXG;)Y6pMfScG}%)PAL$bG z(l2?d((HR%GyFhNd}4yNpEvScjuRpfS+_uT!b3*2HAF-g_dgK+Pg%Jf006)w Bj^6+P literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_107/create_stimuli/_0xd9baabf70b64b42e1bfcb798316eecbd.json b/Afni_proc_through_nipype/_subject_id_107/create_stimuli/_0xd9baabf70b64b42e1bfcb798316eecbd.json new file mode 100644 index 00000000..9c86c950 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_107/create_stimuli/_0xd9baabf70b64b42e1bfcb798316eecbd.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "107" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_107/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_107/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8aaf42018b283b31532dc377b932a298c2e95492 GIT binary patch literal 589 zcmV-T0NsZfDRkaGkjQqOSRR5&Yfg>2E>EKx39P(TT@0(0lf zJD|>oeKrWEU|#@q0oa9c%_x_EK~g{g)Q1(I3zVGJfC`U6x#+W&6ce38*|N(i%8WN8 z1QS)|DN2#$Vr8qS-AlN@Qexxv#@BD+@9vp|;>Y;=w@Y0;4#Etr5Rt-@Vr6+HC?}IzZKGBv5KS5h!H(1Q`w^ zqhVxZf{ccd@h~zrLB_+#WEh$J2U5?6*)-@5Cz=M`>R9O$O~Z?k=F{+Er1>;Fi+nJF zl0LV_)ZZ!+pSt95`gmpOP1W`5k6v4&YdLbkZn7?5C6EgiYF{G0`}J^|juq&VPbt7S zCepU1lpwWa+wI$Z$9DTV49?r_S+CP>zxoSWBY#;T1(!EIft-nqGDI?l8LBWr!q@3O b<#>(>to%X*L3kb~e%p9=Ac}Qp=_RFk z*nu0T6Tz@V^77tuFAq6~KVSL%pX-28nHZECLse!r57IO*(Z+z&PXDKM|3Df+7C$)CC@Gs z=I7b1)6?s;x!ugOMVBfdK9hMiSI@JLJ;4Lkw{aID(MMQCWA#wTK@f>U62TB61o>od z_lG=NNi~bqna=BsYmfo;;H)*eBwCPwMTl!YppnA&HPed_z|%rvDyxl9#Lzg1AP`c! z2+|lR_7ZIuTbrE+-DVS^FPmN|G$w`MyLp-|!4Y@}NN|h!TA8tg1pOcgEmITDlT?L% z8Ye~G_fCgva4Hi;L;{?Q76=z*CB#W21|144<`NbWl%{c#XSWZ8iy3jILhy+h5Gh8R z`w}M&020D@l4>={cP$bgjfi#Vh2Raw&~C<5Cy~$*bBRm60dS0U`BA@*E0aVit_FU5 zhkz*JzAGUXLm-AV3iN4dk#Y_mC`IKlL2Lz@GUOeNogtMz!9)kdrYM4wO{P9=4BG&SV|E)F>vf>dV7C-ps)43{1E!Voy+-W1htBvj&NLUtmXOwlHV zxRr<~A}TT~=BJWc8f9~BB+St;a53{Ea!46w_))8ASY%di61?z|X3MeQ%q&E?aTXAQ z8-YIsPa$ng!6dv$fqTgKxfZfsrEzRlh$e|$_mRi>f+HtLe!H)R6gSjDtKHn*#BHE3 zBpL6wJgbyv%eYI`%@$?)xPB;&Ym@TgZpuBI;P{mJxMXSgQ+8uC`owfSO~9L&T@A`H zJV#{y1aU_?P&O9SEd|9ii%m4ZD;ZX%ycCNk6#%{o`k5_Wfpy;Hky6s%tf@)C*!y(kVY`HT;C+Vdc55)XoGizxMYl zf-BG!4BDrRn|CCXs`PsGXH!$!GvaN}g10@!+rB8?&Ww0Fv*7KF@pdkXw>u-=?ksq_ zW4zt}#ygs0Mhd_?h;i4PS5?M+IC>~4??bh@(Zx`nh|-v=ao=XQR-5)v#~+#fW)B_h zS6-cb{_125d_+$4(6d(S7Swug!+CqixLWVk9Gq)HItXnP(ZP_tw?ekg57|CHWP6s7 z?ejx+&JWp{C1mIPklph`cK=66!;jh6U_5*vHW*hI1^t28@ZKS3XTy7koShBt40(!y zsG#3*j9Gd5g*9&NoISG4NoDE1KiBIUPQk2QBUCn=5YJ1HMe8)1E(*XJe@Flc z>MC8W>fvKxvzMrdc?(sqSAS)${I$4N}$+Z;1qp z*f@L5TtYD|jfS;>)iL*QJ~y|qH`%foQzDfpJ@>LD6x`B^Z)~hhN$o;RW9rw>1j7$KU+@hk5?Y774dW z8m!CqiiL97$a}}%b}4m(t){!#b-Qh7xq;_yZ9nL=HUT^r1^248$2(kEX0wE0$X@56 o9|Hal!v5\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_107/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_107/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4532d8d97001b570fb26305f63aefd4e70f45a5f GIT binary patch literal 2846 zcmV+(3*q!1iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}DYT1&VIChe0CuuSnj?&grDgp#Zkv3f=rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`k6*>>(W*K|J~mw^u0L9uySthC ziKDfPuEW5z%;1EZ_?qXzJ=VAMugSUs5~OW)MuXj#bRa-^p%E3HZs zdVcE#{cJ8T=3zkKOy9&BH-J!g>%E$+>`L+zwcS%XJtdB=AE5o59Y?oi=&baVC#u}u zc^XHb@o;(h5F?*2mU0h@CH@$l_@*=DF-g$MuH1M5ejw3c8oF}t0QXjQZyrkv zgAvz|D(zh{jy|AQrVF6mtjvF zDjR2@Z_I`s=7h4&VAoHuK(IY?TY6X!$~fGfgW+~Q_pp#J>lz6WOp>Npb^#O!z(HbJ zD5GgIT`Yge1)85=f#Bh3iZx$n@Da7qsEsw!C_XJPc*J0v8U+@e984K}>QY>y{imi! zaf%EI8N!y&U=~u>OvF>j1&z)$`llj;sm&r5naPwF>ZjQE>=Yj{DV{JGF&H!0XRyXB z1)e07ze|^;dnRo#*<%u-Yn0l=q}1?)VuQg58#L_L9L!4-*5VBrjA+AVN9={6Av3>k zdnxw%HpN2*dlUylEyYvDe#+V~{sGg5=TH)Oyns(BSH{TGr?lT4Q_QYyVbvmIbWHIC zFtx1vVVh7`y!xe;cIG37Kd%#TusT_iYA_shfeNQ~R;W^s|`y99k(f zD4gmv(sW{^_=I7mGpj}RfXTv`!8GZbrq8!Yz+nmp7SnGRG>T1w#U^bWGe%yX!PJpE z9H!W(<`Zqqn9zRL3vt@O-ZaHi>($HS~);$X3d4G`*sMGMm5pvgj;odBB_I}FVQj?l*17|q*rX|U7l zc55w#kp}fv@+iI0RpIFmTIKFJ=?a46-RDwQ=~WtPt@S*PK0RmPBhau$I8(=9tJKuz zpn4K*vs}vMKp)(BQF#f^;Hp}cdP-KGklBZFN0{9qrR|Kx#Z9~^%5 zmjV7N=^zhN=*WOVNjR%SP)aSJCGT`=HHh{#@A^YN(K@_>eA{$DnPE`R$l>!vv80Ql zpgtJf*VKZpl~hf5AgaatMWKYW{FWhZK^8#VRi!Rb77N-gQAbj1CyqY3sE$lWw?YHt z)qBnMH)_4vQ9Bg{^x;Fs)OJrz%hGty3WuhH`JwG);XgSMj6@j6CpbWM7KQ@NvJl9z zk7kRMYf7&}^Y)uEBb+#Bcpj7U{f||XC0!qA5d)6bamz8c0{ColVpea zl$;D6_v%t>w_R0x-3HM3(=?$9*DYf#s>YFp2)#0x;`0H_cZTep`LOroN z%(-4&*YwfCB{)X_r|lHr*96lp>4VD$2d@hU)H~#kk)KK(wccnyt~BD&N%V2`aZgV7 zB7!T`DxBk><~~o}2zXjB+P-iiOm5-jW<`Sg|Kp_6u;;oKZ)>K-9OrIB#MyCuc354V z-KzC(;1*TkzWa#_#+%+rFoLI27_E+695@5iM;`wNtyaD>+E#3e@o_%DPK6%wM zjem%4_z2tNA$rXn43fbh^c~%WXG<%(2~P$;c*83m;XzK=f&=x++3T)W*pF_Qju!?v zdEN8gVEztE#epC1ovtn|8EBAMe7mF$Obe~gUqEeU3@y-9ptw=Km4Ux6=GGaZnwd|? zkO`UDuxXPmBIA)WKF+{D&&VVL1K+hXF6KxzoLL>YrbBF8?8M%T|sY-ZMgSoXVDJXr}p!)l=6<7~68klERsprSEy0?Y+?yvC7BsReX7bFi@i z5P92c2f^CLx!`lOzrW@>7zJw(bf}pQ`L$e(*A5Rkg_$B=k*|0azGBK(d|STxEAq`> zg>OFPn}1urg)8zcT!n8T)t_dZ!b;e w_qJB_p{fSN1fP9MR6%`SFLHTKj6r1G0@(=<8O_lV5nbH>0EcjMK)Du&q~BF5XKb+W%VIKPc77@ ztD>TK^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFE~}PX=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69=Jj0+r@L=sc$f^-mcMgF1!k_U=eJkaICj+^vZ<95oOpv}wMYHvLeG5D%yD zl1O3iBbU1bgis|^R8hi1Q6E5+<=veQG zMPeh}u08h5Z)Scolb>(@&Nkkw9`}*t#YF*8!3z*vLIiRYUQ(rCyt{phZ~vR$|HWVW zJ-13E&B413nn_LytrG7x3FDxtPS}NaA3U20h-F%pBSvZi-rXWR_3qyMW<)!OL+{pO zYJj9%d$$sKcPCLYcS9J zfF!fDU@Ep4ULrYIrZA2hmgitB%?s}ypQ#u(;Z;2s2ZN60?CHFA)$$+)p*+Y62v1Wgb2b zONKsdPLxtY0>)5%K@eMwrZM@%;wGayCFtmwq|{P_A9ML*T#W<-J^@V$0u(f!OLwYR zhIA4P9tu%XjKy2;9vQ0&q9jH}8%wHl3uM=%8gwZa(ubu9SrgQ9L|;(LmYjMzyIRVz zR8vVNpiM~mBED12G406m2}mlFC8|9rsKydPb|RZX&=!GsR45^c5g}t~scA(cx6(tx zoKLbCJwGQ?%F)C3yPd$Ikhz8NT1)9Rb0v95L{m6x2q6}bF2OTMn-DM!Kb9a9Wc*4O zS#Qcb4;i9GQRRK6akb{iC6d3Ys|m$|TI=>YCj%@4gC@zm-n`pwI?8;@M4?2vy@;kd zs17c#KQCocIXLevcN&(m@7;r$^hMZuRY0;hb~kHe#8~9uUnyiQ%-vq15WGweS{h6# ztO>C_XqhrTLs}lR0KQe0UxzGKfPfLS|OG&FRluyZH6VPnWw<&8fXcus=K1 zT#AC>A8u&*O?|t-#Mr&vFO`Jd{Y{KxbKSddZqNpnHrtC$3p6K#*ROj~#pb5vZ7t#P z?$u4S2dwSpT02FKP9R-qC!u$@7be<>zHt+qM7MK{d7XLd-Dfv8h+M_SLPa|@olbXn z*hj?=39%Z1mjDO?zSjHGTV*=cE z({<)DxBV=|In*`wWfd&y)@n)^f9h_B(?~W}o}znhi;R?=_0V5&S>vsir(s#EuAF{- z6Q}=cMz%>4O`Mbj!`WV%vK!b?bg1LXrn!&_UX@`YUAfI5Gpf{Bey45&n~ts;5H5C> z+D+Y1(D(b-?4b8|>(Dhy(DlrH_rF{T9oaNgs-~@ps5M`WmYeWCKa%(v8ax#kjS6}@7M|l2p>qJ&2LnJnCaY{D%t64H~t+dyV6a0r{7\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_108/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_108/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..dc81f347cacf0602abe0bf9e8823da2be36fd21c GIT binary patch literal 2541 zcmV`niwFpT%z9-4|8iw>b!>EBVP{XAWephm=FFKh=bSmi`DXsK`qzJav6BC#w|pl&2(jS! zF^-1F!bBJ#f(4R0y$%arR?&_s`i6*`0LVoZyH!fuA)Wtt`x4SlY?b z+ow$@vEw@NfiR6w7{cHzUEfW7E2c(%%+j?e@ngrs*?1*A_ZT|HY__x3)Xvg9aU6J9 zeCy&NcsCGz6oteLLhPHN6Jpo#F%j!S-!a1|u*`TI1<7b^&OH%Lk__HrD>fb5EJ~Xq zI#L8b>?A_DAI*pVyz)2YU;mk;YuL99>Q4GAS&~bIqFgAJ4e3FxRH;ctLEfxZWGSO+ z6DNX^)Xj7H6GhXq^ny5Wd=XMPh7{_GuB)B4*{ZkeO{JHm58c2*u9*1FtoBHZy-*a? z9i>3qVo@$vi}!Mv_kXAx?C*56PR~$!Ex>V8h?@ZzE~@`DK5 zNeHRFw%=%)Ev4NzyFF!B-OtkV(Cgs>L{CTQ>Psa{SBsJ)QAtNP+VvJlz6j$%K`O~5 z=qL(Knus{X|6^o?%c$kKDK@hi#8(knU$>wV*isdsjsX6e@=tgM(2 z9Ep{x^q^7|-{FJE@kb(|30m9LwdY_55)Dd`IM2?IxOo!ccj{2Ji~FrkL)}%Co(>K^ za=dM4kkG&yivHB-bj?Mc!H+yJ2vBLLMh6mpCAUkh`N$8l^lbNeBTKIyuO@Ir>on&< zuQTE2G;c>sxR{Dfah>lqUUXsX+7unQ$cJ)0_sr1L$B@E#Sk9nQ7T?E(l2D=z7_7h0 z4W-pEm3?K$?5g0?xuSeuuFzm<{yII?c#);|PUTPVk{GsCVSh0fO5(AgsrAmToTWF| z%JcwqdJ0>b^=6}GYV~##Y6W&pUl;nuZebG^{z-=hekv#HeO>9DO3LboOkB`(Gp|cM z+yC$Rm6eEWOEufsmWo@Ya?SN~P^o$2ZAq$y&URVaDwS#^$mREI_7ND^^R6waShF}B zL^&=}?9I(qx5~vDNwybYv|W<6%B7lx=oIlZZ_2d*K$!v(=bGgjp5?>k+P6ZCq8t|~ z9vv<*iYyMlWjcuIxMRfdVVT2Y4tq=~cG=)~#^J+&;VP3KIw8YLWHZP)>_!~sAv4X* zcnG;*vvZBXq0C{Xa~#XuVCEMdEO8WiOZ=8g@sz`u!-T^ThY=SF93ssBfQ4m+4r_4P z;}T*a=GxR@u8}FjHit2>*|Za9xF}7CB^+@Wvxdj_c*nX%-1vbPE^#>U7#?vrWH=t7 zC7yBmGhT8IuPShWXfzMJ;nm?--t9&R1x#paU*YFDx@$ z=BMKtlVGsK@8c!(6K*z-VMJK`k;lOaGc$B8ray5wIggpmk-LO8gENcGG@IH>e872T zanWLL$Yo)|VU~1+ti@*%aI%C$my>&C#IR%Y*kO%#oKjfgFf$a4MoSzq^(mTgDoh@P z30XEsI9uWw35Q3GKf;%H>w#4J_M0OBjPl(Q2d>R<Os3%y#~#CW z_-<6N9TFdx@Dn7~@VEvQ_;`A(%@2T&7T*ocV?IKgpb1{I7t~;<-|H!DgQEt`c7Bwe z@0oD=16R3zg0%u6xwNPDjDB4+mG)kiesw}2!oW)HWKN7h*HFwoU_CjvS*=PE@Plj5 z>o4F8ZkP>K?`m}*2^SVrpaAsk3S$6W9q8h%*RSCGrw5+*`ptL0ACm8K0Xxc%9JjVxSMyv>9Uo2JRswK-s^TBWvnPm%AO;mg! zo0ZKm1L^hKh6+*THF5nUv8B|U z7VPg%O#A9}^62$=o_cU^7C1exv>jD!@u?B)kXj z@{O_o_cJRiKk*TvrB*vpeG5smHGNWW}6?(55M5ykaJ1MYE9bGPyrfe^*x z?Nc|xd<(C(>MHF2FY`(xVGy{Yha8u?&Ru~S=hyZ5Wp#bNRhutii<+?S{?CGmPIwTH z;Z#b}^>ILAAJH&A@^SbNpmhs0jB3`j#R|!q6&Jh1q7stdt9j zpQ#g%3nN$+OBPCS(5;0Lp5%`|-+aR359B$*wiD4;o>}&n^n8SgM-S1n!El&&#!2K` z0h}%E^a7j=QT$U+JjH5}zJ{zFy>zvcL3-Zt!z3p8bI;}B;`z!XF?=KbZR6nvEX*A% z@H{w*?`=f+qZu*5rF$ET=cjucHi{7y-K|~RfIr8hp8?uUAEV&>$fXPI?Ty=j3V-@RWtWU2ls)~T=JVi zTSQBV!>3M2317}~Yy!nxEtN&6^|c_0^F>d;{@8@^8C2RuSlJ2ok#AvIdBXny3?)=DxfK8a DLpb*( literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_108/create_stimuli/_0x3a145b4551094625dab75161caa45066.json b/Afni_proc_through_nipype/_subject_id_108/create_stimuli/_0x3a145b4551094625dab75161caa45066.json new file mode 100644 index 00000000..93590d7e --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_108/create_stimuli/_0x3a145b4551094625dab75161caa45066.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "108" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_108/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_108/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..485b21f36ec352b0ef1c0a0823471cfafabb3662 GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zWNZ<4dt{^D@?-#jVA_pV{K%803SF4N#$-obQP$D*C|V09GbTa##)c z_#OaZzwd!n{bV=82QK}BzePLXiloz*i7TN?Sr_AMwrSZ@D`gruI>3W`#aB6m? zUyZ>zB8s10FJ8D1k-l^CY_a>hF7sdyIJw~%PMKOazFBtQxm#H~-j-8MaLfd!9Hyz+ ztxkqngrx(2S>)J(zTm0DrEB;ww%X&A85^GMS(~VjfJvV72xhsKu%R5)VYEI5vEkGJ z*u6JLO_NEp{6;|f;k_T8yfCxxwLAo;7E{tya#V9mVo%elJ{k@9B-x|dOI2%}3SNEf z?$$VyMAabZ08?h(374|g>$xwEO=-`Fw>=Bq_5^SHym&h^;_b|Ww===pIWJy+M!fzk zc>M`p|G)8$=a`Wa@D^a)Hs@8HvWOf!5||B0y|v*(sE{Xl%H*W4>o*$5J-F~Av)k%{ zqutt@qp#i^O@NQd2_AaZYTbfb?`=5m4;feMy@msGO-KizjUze`viDv{@9dE6vqQFL z3E4h7WasRVomoP5&JO9H9n$|FAq_ufV}tSViP&IVofq^cV#7y=oSh9H9ddRyd@$q* z27-eAz%gd!>DSiS+d6$@nUl);8$agQT7Rk5H=L4L+eWBtI5C`;M3k+QY&tIhYy2qz zWT2~5y|%>}fkPH#P~{O+ve$Y5!e$Jo(BGaz);EoL6T})QYn(JA*=l+BJAM-+C_+kr z+LL32hY%>ZuG?|jMIPuiI$&H7L=HldSt0dKUnzyYy{*ZjSJdNv920%DlH8Miz3{xc z!C}2n>KIw<=u5^9G*hK#hOO&>`W16K?o9ga)Qa$T_*hEzg;g*P? zh|Sa2%q0-h!f03A9nqKyV8yzM-*pOlp^68d6_96%0yn zrL0=z1XS)ydDB5y45Vq_hP{IJDO|jaSstWRDWk66=>@otrDzZoPrm#6PxJhx7ZI~b z8m!CqiUo4n$a|-QJ%2OsH#fc3L%-YJjBs#&)9ZR6#{Ooj+XV$~?cokrmDwy|9MiW& p9K{6w_v69af\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_108/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_108/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5bcaf1004fb01781869e8dbdbe2a488aa13386f8 GIT binary patch literal 2843 zcmV+$3*_`4iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq=(Q8ra2rbURxm|rG9TaKi`fWVT3gs)%$l2YPM z`em1ykY+10_68K9bvAgVZ`Ck^ISiOqr1|4q=Rs11@YhFjlagP;`L}%9U&i^t`pZDEzR8B zO8vyq+GW>aU|MEy#*KZ=^I&out?q}89uOygi=!1kbOO^x@o*`+@fZe%G}_zx*odP; ze(2hWKe13B*!6fv^F6G(9&%LA^pIsb2=kS`W2&C->S{3b-Ec5er%ZSihrJV|2dZhP z`P>6u_mLJL6+_I>GJ%W{`dUJ!_SN_CfByO3z8kF|$505T=(j>nC}i_OHeXb756gwE za=yqFg%Ws*iP^~XVJ6{vLw+LG>v438@0kt{`5ZzXWl@%;R#RsFMeH;H2Y!fj*K++hdgqBGD|@Y` z(rE#U+vdP=ePo0l;-@#C_=?j&8!Jjk2(MGE0`e7UO6+pUdS)PfJ#s zl?L?u+6#KwTtO(nK%O&w6Kh-_Lfxx%MOoRG!qB`U~&_i3TH|pJu0ztt5%?J2r{g z?Sn?ED(y>RM+SnAOncYtg=Aq>QGTkl+UhLNz#~~0EKsaUN(&NxC-F>vlD}3*QeMW<=B4~`b{N3Dl|7in z(!yZK)ul>nUx=gk>6PgKXmvz-X;y31hFY&QYfvk2>vUzVtL$f?jF+FZ$igq>WVI`c zol8ksew~Y3by-d7QjQP)eRFBa$Gf?*VeaPgJB4D|auQG~+r!;luI!n+#oSJzP{wZ3 zzg0Hopl3{nc5?Z$&S2M1aGqd$>UMjlm@ngScLoN#h1^cDP}VgPA{Zx4q3i-E5`crm zvRFowWV%rPf(tZ1!FhrQ=PA~Foxvy6Mx!>?P^0*~$lxJ^ZE6%)baF6Z@VQIzHtjz* zJ&IFgP{ z+`%BlJ~ba}BgTaGyIzRX2KFW?o?x#(Z~Pf{-kpcJ@)w`a0m#bJ6uXu|v2PC2hNt;K z+VIgyit*S>abQzyc&CG`Vd7x1hYb+w{Y4AX;h^zCo1Flg7CQ{h1&+|h+6c|sGik8b z?R3PZ!bpQ!GkKKW?5Obc2d#4Nf^-Ez^3HRqqjW2ERct z98^!DZI-ulInW1pUsPVgGq|c&CAnR%fJnGClLA?gZ+EByXv-iMKRY^v=RbMi*+<7; z{;7|@OghNJ6go1XP!i565tLFBXvupWQG{q;@vcAM6RpE5$hS=gloYx?Yul=pe<-M>2c`Tr(h6IKumxEFaaWZ(L|H6oyF?vH&AmAK__8`O9o-5I zkXP?ET3@TRMq6!H6wrq|jH&IOo0g^Vo)r#E2lE5l%ff$hA{YuVj?Zv_>?{lgnq?u7 zV;@czDT_+CP4o7vG9>7IR>tksD>7WRWg@uXXR5N_n}FW3v%*$sCbd`VVBTtzEPedl zcd5X%5XR&{!r@`&_sKCwt}A=sj8jQd0tPzB;XdB8b3upDC);P(e<2>qPTUb@T^JO~M(W z)o8=4yX$N*Za}Hrg9SCZbp@1oU3}Ihu9uZg7yNt-BWk@>sj5wBUy(r7Dq@pl6q5N? zZgv9cbeoC$MV)p#7w%bZdR_5Q^AQi*b>L~IJerWBG@kaB`H_||ylR+M$JEQTXNuuO z0NJgHd);c~8B~BC8XETvuuE=?gMYlWwDbd;2r0Glh3cCzoz~$mHu%eNdTsh&GeSMF zJIsY%UDx#C!X>ys0H^H~;MWAxuIPiy2M4c92h_Xdj**{AZM9Z!J+9Q_;aT)i^>J5D z_acHT)he9hpyobH-UxVFFx1|L2XIw%fh)j+ZpHJ_D0u_)`5U|ef;{`kFn#i> zXA*xO-SiQ*$wTyQx8F|&gV1+$7oIK6=oUN~{NRUP@#G8eC<6}j*Imu97u_@+FAQ+< zy64^g>>ZYh13x}EUtL-&om?PCNw>oi6huFB@Nn&I4RVb5uW*26GrqT>m z$D?%^U7wTK%&Y;i?6ar7SQF)z{UnZ zCs<#rx(%r>WMzR>a(GTbaIHSo`EJbb;Z}r02wm$(l2={^6YzC tGx|VP17d>bpAuD2pEpWeffHg7S+_xU!b3)LbVNiK_dgTc(_y(B0061HjqU&d literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_0xf27743b314f96b86ce4efaf7648fb89c.json b/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_0xf27743b314f96b86ce4efaf7648fb89c.json new file mode 100644 index 00000000..cccd06a3 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_0xf27743b314f96b86ce4efaf7648fb89c.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "109" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..06fc8c6a23dca80255aa2a06d19595c2006fda3a GIT binary patch literal 590 zcmV-U0KpPL$e`kmOJr0`mb`x}Vv97|Ds#dEic_iU>sUeVk*s+}ynS z{pajOcQ&oPeOoppmza`FNZwxlQlSEsAm<25q@Llrsc=@}3fZE$UZPyOpnwu)1?J9| zH$a_t`)m+S!M*_K0Yn#JZA}^8miT&1M!Q0!d3j=MWS9T~Q&dH1#g-lthNUk%@0~@Qsf3jSYQc z6W{pY8z1YN82TnAzRAHi`L}Ohqa!=vsd7B$utqi}1^PMRkj#-CxQRmLv}$T14$nR& zj&rwzSJ8YHq^i-(T5sO3HwW>4I8}$V%Nli3qtpeDL%P){b%3hXNTAeuB2dWm5i%S` zM#IR+1Q`t@<6&fMf{cfe$uKhc52T(CvuV&BPBaa=)v?kinucd1&8OknNb_lU5_xX| zC4Fj*slQbuK6J_9^x?|Vo2u*AAHB9lS90Wn-DI7^N+1_3)V@S~_v`*N9V^f!pHhHv zOr&j1DM4zP{TZX#aYo#XW+b7ExPUthAoRUIc4+O!AAgO4YC$!MZD5gYU5yZ!Z{^U`_D9Qv6kctJ*`!On`6#6ov zVWDrIp6=q-_Ew=6eJlwIsVMZETj-Ai&LY~kaTgNa2Uum}`XLvCDB*`FAw!Y?$R~Td zKNNZ;S2U4lI&V;>h=_1N&RT;@q&SLb0=VWQoJe?IGra(T1d0nt<$5#bDQO-gB;rE( z0MZyp`Vwpx+Z)|2uhnWn`leTK1xW#TugLWhIU)f7;>=>cR%I+m27Um961fQ%2rT0; zPqQ-b`=`S-85WsDJR=N^76=w)C5A~TB`W4n%q1uykqW0-q3;}UA2MQ8#w0{$faefx z?n{_7AS6SSWx0}*d{+}5-~?HRK}>?d7}~8At1RIvp+53)Fdz(KU4GQ>!^&hy4yyql z-vJ;DxbF#)@*zQnHRJM8G8O34$|7fs1Vln&Vddc;2${95aQEi+B zfZ!)2oPsBTHl|>LyvPX)fbnx}V7<)K)T|KBGP~|0kMku*PJsM&Ukx#AsD*Z?wY>q` zKtf0~-fxAjRcFh%OS)!@Qg!Se3gg4u4VQ*bYEyS z4_=)#O(xCq8v*GD559l=%*=k!Y9lzcn3ArN!t~o?ig?PqIkU-@p`l1 z^~QL;|HeC-V@68AJAiT5oL6WL&NF8V<}gAsv7=is(Sd-diEt=ZEZ^AF?w` z$j}+`Nkh8Plogq&# z5ES$~jxj4wzp%#bowG-lIjO9_(PNISwdZPW-6@&1YlOoq}wBBTVU zJvmZ%2!VpzaJz1&$bG#^`-}^M$WcHtE2Q4&tEJGlw>4Sxih3NyG11p5$vy7Z3s0*X z9M%h^j*-QlzGCb^W5qA_ASu0q`dp2!4!=UPL}{CQrdc|*sqSAS)${I$O;ptoZixtr z*gSj9TmmsIjE1#=kot`?!Jq_J z%c@mQK;^EKHywmUUz+w^*emFe!o|y&<$g+)GV1z`UV!^piu!)>_?y4~FwdWQ5iy&j z!Mbd(SRj{;ymz9`=BC&6yKOJp-tf0J0^*SfN1GeoR^)GO2cW>MJ>21{GMgogWBR&? o!OV literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_report/report.rst new file mode 100644 index 00000000..5f9aac27 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_109/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a098 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 109 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 109 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012314 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_109/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_109/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_109/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2a85063b70f9d1bcaf43970bfa58fbe76aea4654 GIT binary patch literal 2842 zcmV+#3+415iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChdrCx4USC`~P;A^?IEB~evkTBK-<`DX&O<`jiN+p&yLW2&C->S{3b-Ec5er%ZSihrJV|2dZhPIboaE zeWV3Q#Sk;JOdw-~zLt=wef!haN1yIZzKWKRV-9Lg!}m;whkOnpk8)L(rB+jIl$+&RwG&6*TCT2HeCU{y z(jz{wJ)V>Hs#((Jb7EmLx1PXc{B^_Nf3H<sDoDUy`4wt*+AUDsgn{2ptM`9Nm+lv)omlsB&xX zX&imd!{y~ejC{VhDQp)v`BQY}o6dm8Btc92a{UGPfkcCm&rh?{$5xU=_#Kf^o`FZQFj!!M#U-4Dq9Gozqsq%R%v~C5XO`wb&E9&Z)TPIe!s)WiUa`P` zA7t}fo-|;x{8Cn`jfz@5sP3t42{_$?suGK2u_S-3j-7`k&RT^r&+^j*Zz^&7jxvsLG-GU4Mq(v5fB`3>Wx!Sps zl*QM%xKo$aq%P(7;J>#Q7JR%blnirM$nE3{CCf=bv1AW-1)=1by9HqE9?B z7ocZMhjxTqNoTO@Cpbs2J$1XeQ^=KYxH|)b-Mp|<$d`1Dgb2n-Q!Kdv3IyOFu`HC( zB$+OjzUBhWPjHUl!Fh@`UuWV4E5R7M&bS7<}$hyh;1dO^@Of z85A;vEuX;B6eM_hIBa`W8G4(mHQfN>( z(P^Z~*huji!%SyZi|js=g%N{k(lt$=ZIgh*6!tBq-!5nrn+A(b+Bjv5ygY-cBX=-J zu}{s%+K4fs{jL|{w1K@ziYM6XUo`#(JMYf6Q2P4I3jnh6G{vrEQ0$w7wBc!fkT!gD zl43meQXJS68{X+4YnV8g?_mRkdVk)6bU0`{*JdZcro|3JbB-glu{J`p_DmY=bvvDE zQ(>e*t(iPZZ+BF9`h!+^a7ns?AbIDx)KR+Sx>{{MkE72n8Tbe^tPxJtG1w|q^*N}X zMB6NG3IgbZ`!C8b;Tc>}E0WxKQqFz9??$qL@>+ z`&*h?(6vof%WaElajTfyL|T5s5H}zTAnqzshbW6VZI`Gcsks+NpIlW(rlVV-0rKkI zM(aDZ)@ZBkvI6>WhcUI?bJMak-m}7i>0o|fds+BTP6R^{#_<^rke!90K(j0aa_qzD zBIT;mZPUE{p#%wfpOtZY^|B0?ZIK8r_?fEg_a>mX?5wy^oJsBFI+(ZGBuk(C_+u(C zErc;SkZ^dI`6@Z)$aQ6}PSovZuUEH$ZV`FANQBm$$ok{ui&E`8hl2p*w3Op=TX3D1 zm{mX%P9OE>p!?r~6}?AGKx#@L&X=bZPyiA5?lVP|8Y;-?Zk=fUsgC}DsYy5^v>I)g zb$^vD#x*FF2e6<5TN);t1 zgU8*P)ZA}X)NZE^H2ypc0uPsX9;6B>o4#vs{lq6kBL_r|)H}FcdRl?Q1376d631{$ z5%QI?QdXzk&ZT>nn_gEu)O^Ilb{%-yDUT-PD2=DRC4QtO46hre)iL!l?U`aY5kPip z)xB<|{0u5U4-Jj`9@r%}#=*beT3Gm*O@x$M=~DI0m`>~PcN_fuIK4LguNk49*d69l zudZwQaPAUZB7oC&3h--!Y1j0@<%5IQl>_R1a>vL|rM6nDw;q@4@$fAAxbnCwr+X2> zCaO z+IMh^s&L=^!Uf|^?<^R?Qz?v=hb|5rjV$AuR|Lb`!{un%gJK6~u<9{cKiKgFbI7|cj4L6jPAgb!4H1!6^|f@WKUYUc-_?ud(myv@xlNnuY2C@ z&)#9FIPl|x^W}vF1NAfWZ6xT|3Gw}E2%sP{+WM&gGWI|>- zY}#at$av(8k2CPkGcw6Q-*@edi#bva7gi^(=@1*&J4tMez6xcM%k07|&{UeC>UgvY zqpKGr)-x+WEc?SNo~(qQVl~k4X|_>Q$n30;Q_%=H0pa@-6&4--|h9WJ%x1NWDz|0OZbRW5H?WT#5}UHp-4>)}!Ga6L1vtbNVG zXgxE8{Sx`p)_gU+DS^cJw&JOBUy literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_110/afni_proc/_0x36f70ce00573a8177152ee0dba3978ce.json b/Afni_proc_through_nipype/_subject_id_110/afni_proc/_0x36f70ce00573a8177152ee0dba3978ce.json new file mode 100644 index 00000000..b1a0c1b7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_110/afni_proc/_0x36f70ce00573a8177152ee0dba3978ce.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "110" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_110/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_110/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..342ac140d9dfffda698bdb083d334e44855ad868 GIT binary patch literal 305 zcmV-10nYv(iwFpS%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77@ zRZ&p9dG#dhWs#6=rkW-HNYcH?f)9{md>x<2hp=6&LON zx&`O9YTAB6+0b2mZnCP=R#Km*L9yFPrfLK)4kW+*yN%__=h?GXkQK8S&XPTb7yO|m z;FW-Z>X%qiYaG!A6fxX@;0oNHh$qnlmE>+dzpgrNofohM5yQn^o)}&axjtsa$%YwN zz6Lg3C$v)>PY67uPjAL>(lm7p=euuXcsv-WEq~{V3d~$xH}^NUIQG>a1p5lf_W=L^ DR$7)J literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_110/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_110/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..8ab5e75112b1c3c8cbb3e616d615134c7b248c69 GIT binary patch literal 1292 zcmV+n1@rnJiwFpS%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv>{(jntrH7h=)^n zNu;v3m%HAjAcQJaMHMAH6!igAS>D~*vvXd1vAuUmQ6+e(sN^@y1NTh`|$BxKrGX$8Z*)u@a`JnnRk1On-PuseeX6C zYJg;1d$$&O_d%*;&d0U24WY&erdjOGl%C{5&4_?02!!_R^y#7Ks(|j9fLv*tAjojQ@Yi^Dvp4LY4B|LO z&%>@(mRj6j8~Dm?!8xP|NXZ)WZmI!=L_>*s5QNoLFqdj-SXLEfl@nyZ~cqQF?dxOeN@%F>T! zDHWtvm@-Hw3uw0sYD=N4;0Z}+Isu8cu00-)F*Bv8FdO*s905_peP2VNra%H$7UAQt zV(6pxL?tDpU<}n41hF+}T9fxIZZfJff{so|MlCh?v5?=z)mT8_6VQwxKtYp*bia;e zNGHMIp%5kIM7;Lyj8P1*Bg$!LGssiHKkZk8@=QB(GbhPph>c*H}4MGjDw&@okVhO~Up3A74ZN1ttX@Zm+M$RG}_2$@;$wx_@79N^cdKfO7K8crRyf}{DV z_EHoK|8PaiubSH>CdM8fJW&!3j84B=9imN5{TO+&&*mrGdbC3T4fsckV{h=jst<{40ORa>m#h6X15+ zuCtK2-NzZup`NkN>tIp0(NMzpQ+GX_MzXQ$6y0+>WUTDGhyIGo25-GQ4a-J#?exp5 zIQ?HUvP;@%;-n-P&hE;T-NJ^VLmk&P&4oFBxv;bMQK z-82maeZP6h4tjs130y6uKW(lEsY(ihThlNCD z97kIKQ6&YpHuSG|ZUZM?LB@&y>dU|X2+yBxlgQd+h{Se1#IPZS2HNQl^HH2a96ucO z=}B)i>ODLLh_i(DAB|2zbK0xV<}G CDS~DI literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_110/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_110/afni_proc/_report/report.rst new file mode 100644 index 00000000..60e67285 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_110/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a033 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 110 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 110 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.074748 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_110/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_110/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_110/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e0e7b0e2838a16dc6127d3f4a58e6e999568d8d2 GIT binary patch literal 2540 zcmVb!>EBVP25QgY%j@9L{gM2$8x=iV$ljG)FmS2IEgbHii9M@yoDeo+1>55kDcM$ zvTywj?L*)DSNd0aK*<7ZCv9HVGah|7I5;@x;DGpmKQI67A73uzf9YKxhesh2upgsn zVA+TWeTyK0Bw-jtahBdxPkOqDByODjls))M_G5NGT{XujA~^7~#*?MFxho4hS$glh z=_JN3j*o;%WQ8FN&eGN0#J6K=7}R8F=De_v?orM?unzoL*hFZ z4Zyp;=vz@p%pgR*8R8JR*hfUH4SZ~dQDB?#C<>C{$eej1nk4DJLw0Op$1D~l(K=BC zKb$18az7f6|8?)5FW)cyI$c4&V^DX}U&)eODiq~Hv1~}2)l#J@6$PnSk~igys*Q03 zBdMF0^k<5uW$6{Mk9`qRIf4}Gimt2emf5VeY7M2ErH|dfwp=ms@wECxjJ;44)E%Wj z+hS2JZxkQqFz^3RH`w24YwfO~ben+VC_#4M22qw?d#38fPP=7v+u+4jJoJMIIY|hq zzPVp-m`$bCGdo>nSKZIj%h2ng0z^+o>FR4GOP7n1BvDCQH(IqONWKi?enBe9CFm#$ zIKspd1~ApFMo-a=T~&W(wtGgWXJqN61N27nvh;=y!dlOGX6o&o=UMuV2rDZl1Vv(H zL)xrth==GX!v0VsG(ju7y7m(6K%zk@5@*>N5I0XE{7x`cySm?O*VSEB>FVI%6YOo{ zenJDQEBbSz-7)8R20!w^AV8(A8f{4UjodD^=39P{r58Id>sk8Q>1qN;w02__^ePj6 zLGyO9g!8G`6u0m>m^-x>S_c(QaP%E%&db-dvb_;OBC(+S8Tpxuh(A$ix**H}ksGv;F^E zURsLCwp4ZSwp83Im8-6wgG$vKZA(%$#M@ALEeW1#%eV9CjlP^N^Y5W;}*m zu-Umr|5)ZQ(>aZ0ZZPu;^%pn_y#;>9rFg< _kWh{F~a3LGNL|A2*MhnO|E>~RUP zE#}$;GuOz3VTZ$rIBeQ69?VMIFVAveD7g$o?^J%)!I4jGPz)&fsC z{VA`**$2!Tq0gKk<5T#U`N}DU_LRwkF~fXpr=pfQr9*}%i1QU1Ea-p>)CbCtn3);4Hq#$tPR?UybLcLh!{F3rGfgMX0v~an*<7^9 z8*o_|bC@OFvh4Y15^%DB1DBI~Ws70#@EEhkA*U3UILr(M!{Gu)OnqXFITa=k!h|du zB%Chrl!Swm#-HHJyR|7*zx(zC0HZuy;J|elj_`2N2(2hyG$QnFfypFX;Mil>2@i(_ z2b1`;gr6X>2d6ctz(>XILu`l52Zv*XY$WQ)%sG>DOlzA_T0|NoK?tbPdJa1J;vso8=8j0)BAwW$hK5 z!F98)>K&~HB;m@O3KW38-Czu$qXS*Md+-L%e|q3~2XDXs!+?CB3+Q1Af;C_$xz8pg zlxhpy(s#Ow0<%39gJ>w`Tt_reUy*N+H5pCW~XKVKiuL} zz2F$Tt|f+UGQ>U+hhA8Ke|i}h$9$W+SjybHB?}=hSH)Lg=Aik<~NXTuVttZRbCUf&JtTn&1u2@ z{>-#*4w5GaqqY0H$O$5At+erA?cn9x->l_Tl$*MJu8Q)T!P8ztZSA(}X0NM(8^0UH zaY(A72vmiZ%^+}uL2eUfqjy7r);pM8d0vOh1HEZ1Q^T;OsPpxjQ8Q;^|ID5hX6s5u zR)j?OT*skxD55F7MU$DdDvqt(!;f{d>X=!XNoE*s1d!c^veT>AUO)xdiDL=x!Ml88 z?En43($fF>5kE#s~xkUwV&3sY;=@ZfxD~*If;EJAwUG6$}17@6E*Jqd2)!9~UyoN1m!oK@I3nt?5C?3J7 zl%%VpfW*E zI35*-uqw7Jl;EIS2_rPlAAi36gvTGqbA%im(N~^n_Sf`sgosBE(Tl-gkaxyOsMGvZ1*WeF(^fN%a>0=a}AGvg{y}fo1P~ne1 z-VoDYNVb%e*rVb)FhdMC0e;0w7j4-;0qSfr0w zC(%;k@Tn70!k4oghd?oJl*%I1`bv<*`J$)aeC)wAL^eG`>qoF9ux&&Zj*+8-l)Yiz zs5w41izL?aoV3!p739IKsH~w6#xJt CrT*6d literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_110/create_stimuli/_0x2802425b9e54b64f9e9b7f212d420d57.json b/Afni_proc_through_nipype/_subject_id_110/create_stimuli/_0x2802425b9e54b64f9e9b7f212d420d57.json new file mode 100644 index 00000000..7746d650 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_110/create_stimuli/_0x2802425b9e54b64f9e9b7f212d420d57.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "110" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_110/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_110/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..0c4eb2a2a0ef4d1d4524263240ed48d2b60d8f58 GIT binary patch literal 589 zcmV-T0BIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO5YFzDKgL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=fD1S+_y_<1!OI~9 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_110/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_110/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..616d58812422d3dbf7621e0fd74eaf96b28ed392 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~31jl3vgb!yW|p zA@-Kaw(O+MhGHldq$sv!5ADOS)F3E{vKULGN>WbJBEa@itN`DpJ#7DIzhZx7hm?Ft zimd5eA&5ls@SN`)exyJCa_NtMu3xZ^{+!Y5C?jr0Gm=n7T*CV1#dt_$p)c*iyZF6m z{8}6rbv=(5PD!D!1%hBjkW@6y6I$qH6jLIw2;!qcfBHCL6lH=3NX3HZ{TP)|3VjjL zu+X1eS4_ zr&*czy_4aZ42w)6o)Lyd3j~X@62l~v5*2eO<`NWrUHFdS>%k7fJlkO5dv%_nkwWS1)VV#A%a8)D8vd&_!y7h zhE_izhExQH2mmJ7ACIouTAJlVP&^ofk!+B>0=h}XGsGEGMo5LM-2~aGQ9(q`CZjiV zX;v-4iURr!t9UA@yQ8T&8!&#r(2xjemV8p*13_WgVJ{2`!z`Gh+Kmhg*i67qV3R4@ zq!70U`r!C=K*03hmjANAEE z2!2AsDR>fSV+tn7%bc(P7(dqr*2_Fi%?jZxv+F+cIA3z)7|3t;)eysmT4;N%txebl z5<;T!ek*jXI$OqF(luL@sw4M67}qA{#hsi5Ho@^JbGc$^{Ik9>8hvWIo@FGMm|cmg zF*rv=@zblt3l~BXIVaB+yT9u)_xFL5>yF`+sdeM4We1*nm9^8}cB%=Enc$SeG&Q@` z$uJACbl@)w9Xk*So;qB*h7TjFeNLIN;n}{m2_pndYCDf$mTL(c$YC8u>mv~BP7Q$F ze|_9EnKa991f(C_|KZ7VGy8t4jo{Q`O1er8Yi>#GNjlX>qXC~JdsKU&YK>FDtFOJi z8fTKI8U*cQ%FH|AQr3Ds_xaQmZ$`Y{EO@;!UhlkkJ2T?#%!0Qw#@jhB-tLTeyR+c! zj`4Q?8}De287Tp81I8V5UezfJ$>Ae`S)bHf>s<&H@FY)}9QSQ@8;xlXF8s*swR+%a zulD-*i`U0v;3IN^hn}@sv!K>`>(0AF#?@M{;lNxI(gA3rhz^A8y%Vy1c1Z8+klrjI zy|Y7h&JNj`C1mI9klnLGcK=66!;jh6U_5*zHW*ju1^toO@WCNxXTt}FoShBt4S9lr zprGG#j9Gd5r8RDEpFXn8NoDE1y-;iGPRXntBUIL%7|u%~%GOCXofm*L{+IwV z&{e8l+vbeGAqz67@(3!qZB*If2u`8DK8LJt8uKQIHBi<#X@;`ZYCq_7n;=0EQUcVT z94S16K*4Rg9oH*zU$4?W>$Ymq%9q(bw>v|jh7TM_fo84%OZ21o&ukD3huN7`Q00nOC;SN`o*(_lk(>FyN o#svOHasN$0AO}WB2xg\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_110/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_110/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3d5fac44bc2edaa2a83f1474e20cdf15ba527e50 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8d;K^IChe0CuuSnj?&grDgq=(kv3H&rbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B1-Z6(bG@uIqSy6y6c%BOQbT(~o|LHvb;Ij5fkGWrRFzICfNfxHNNj zGw~CJ>z7>zzF`{v88`M+*M-SZxV9hInopek5QVE=VEcxJqTy0_;}HxDX|%Vsu^xqo z{Lrxwe`2COubY2PTx2V*;Ud$p5$4N%+fZE3(G-8^Il*A4OquWs4tgg@^A$r^ zve^u;c}VqYzxdpja#Bg2E4gzF9IakXBL!kc{0uzASm5b`KhB}r^Gl}5Q)u2nlx_?78s zs>uhoF)2Odeaq!Jaj%*tZ9XgHi`lIh#^bLV2LF4ldaEN>I}O0T7a+|s9WM&sc`Qou zUaKj0TEOC#F|ZvE>46LRzH?BiDUE8gtF$}Seeoa)S76jaX;?j(C5c~Gqi{K!$z(`R zOOl)A2K4;a^?T_|PRPMPmNPs9t6U#K-K}-2lDscUkCj$eZg=G_r+>Q0)h_>YuD%nWMP%6^h9p8m06yFN4zjtV6`I3ElBw7*e~&BtF{w` zZ?~UUqVT=Nk^&<2R&BcIHQMj@2_$wV`HjJeBL>BS_(N zSw^pr=fCmOIW9*UFj;yb$<;#=Q3sLw!y)qpDtxlC*nzdS`q14OG8q^BhI$eqD%KPd2aN!@f$igq> zWUVVzJC~BO{3;hW>yi@Jr4$|fXJu*0!@HT1ZtP~VJGp$xv|~^xS;O5-rsNvC`OHo( zSHe!*zg^Pjpr=oVb~4$L#$d;bah70f>bAI(&z5koI|GB=TxKVqD`_eT;g92{P;vm| z3BZ1AnJ=M9JY6V#!TG8e<1E30^8~A&#^4ibqf#4ls8W2MXYi207B%usI@zBv_}rnm zNc+zXm*NEJ6f%TOkHIXYu9=AEkP8}}Y4pwo22-0wEHINPFVsu0=UNFqVNyJ1Fk&!f zu*YDPSqeN!D1V18OLGm{V6w*~L{llXu|cWfF~vHA5!Pwgk#g14D zLjz`h&vFy&_AH7A40b8@2Wo;RjQxbQVf+K84cDe5@Mr;_Q?87Wt4(OXGoqMX+rp{^ z#^{vdF=DtvgD%=(7HYY9it}tZrZIAQ3I4`UpdB#LEQ(c3*Y8;j98ouYQ=|4HgXw26 z^*JyTs8cx6Xr#$lPw*MTOk-AytUi;45rb*cRaKj9lYoN+_D!bW%BvI`I*Se3IAx67 z9D}JNXD~>xN6p9Th%ur4jvL^lf!#@hC)n-J8-InJcjrN-^u_0M0J8El!H%g@>=}ck z;i{gWG(2>YU_5pc>{}G;?&%<{8`xj$VFLtOf6;<;*l4`aW+%X=#STMrfg`lBIzqGd zOd9NUJDqA%W~4!_89z!_Ito1fL95)oAYDO_yz@-#$lY>XsWzWQ;U^aiJOmn652orE zY~`x*3{+37ZI+9f4CsS9&&x018C+2+qSUUJK_uLqNr5!Tx7$pB){-^PfEM ztfS*E|I)`_#vSBg3LPm>C^2V+2uiUDw4}XGwF=R`;vH|m$6AM%k!Kk;C^HP|8QFZU zAQUx0$SM!|_f;jYsYON2J`j|`{X({g)ZDf%fIMCSaaR#LL|H6oyI38G&All6__8`O zY|RXGkXP?ET3;)*Mq6o@WzdH^jH%_E8>Xr9t{Dsr8}kFpO~Ze3A{YuVj?b`^AFlH%vkGX!>7)J(bpKnhqW5SCh)og1`P#Gs@*o1=eJU$rLjgJ6trN{Z)zKd? zH3?^gR-+BG?rgBdxCy0l7Z%j$)@4xQ_3G0ualI^ey5Q$y7*Xo2az$y1`?3hCR<1Tl zMj@GRWo9RkPPZwGu&THw?p_qOM4FR=y>}t(;ZgALXqejAN4n#wsa$b0b@crB52?6{ zVps29s-pO0@Tgl8oBOSb((TlN#-E11@8S~AgH$19(|2^PANz!8z!)>9h`iwZUJH(<{^e ziV^CG-C-{DYMQDI7cRjC0yt?W0KX!bdPN^xJ~((?I-uSmcZ~EzY%8^T>ruHL4bQ@l zDv!ESvKJ9tu2kS02Q~Lu{6@f4{o(GV6JdM{FE`2}-2WfNm4;o%F?mZhOy)Ru8zN4R z>(j&P+VobfeGRv$0{7idTrl2n&-@`gm4a|>=wRPg$uh2ZMKD|$u7ztZ6gxPBZAYjZ zb}&g7xNVNSOUY!ozLqO;llujwkWbHk#)dyk58$e30+)ja-Ky)MQTztz^EY?{1bOz5 zZg}KX&m{UjT=5XL$V2pPr{9kU{lK#|2c9j>@FqMNJpXmCc(#iV?!#`hI)B~O40_>; zVY`8k;=?TN>_bV0g9WYTPgVad}f`> zR#LMGDKa579X2eoMWkGE#>Xl6=jy3=pzk?W%E26|hPl;=W7x#TaZh3!y{|x-WK+8^ z3pACgD;gec!05)D#8zq@h^4=M$&;1vQ>^$ZK20}jGMSyuWEC_*wvRa+sDbd~(06`n8zWzq@SkJjY~|vXMRuy#-~5kkTlbFq zdt0e#W$mjbMq8;N?3c)!wic`DO$o%tza#|d7+$t9*F6Oy-If2dG_N|18|B~s6D-BdU$afKYw+^kV9Jy1XivjTJX z<13)fn?p7T=ipEPbOGqYxMq|~z#u800P4dE&;?3PYe0q1pj-`EYl?}^p={md6lKO6 z5`vkk@)f1XaKQx~XOjRZ<bFq;P5;Y`z@Tb(L>rfGOG(tH}8j5MEyN0E0X zP}0ZNnEG2q;$4><&hM`*y{Wo>!_jNYzLvHJ`pLS4l|UX?seOrf|Lg8Fohr~JpHqNw zOr&GYDM4zZdj_v+=7)I^>V$f;#pMn*wQLwI%g3FtLK+Z%)86p|O3{{vQ5$N=Q ca=gR@RzV@A)9^!_1a0I00rj(&b@&JX0I)D25&!@I literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_112/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_112/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..7afbf9a52efba98b612a7aad6d636f40b48ffb4b GIT binary patch literal 1538 zcmV+d2L1UTiwFo)%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@Hf&l3vgb!yW|p zA@-KamhGj@hGHlXq$sv!5ADOS)F5byvKULGN>X;xBEa@itN`DpJ#26LIr|m+D?6m* zOI&zO=L$h2l85Jf=kO!_@#jmw|8wnvee`FHrY9+JQ<{>PGU5`}GcU#iB6EG|0N(j; zdF_|{G_UGq#Bf4#ebpBPD}tn=Nfy&wucL?(frTHP~j{t0Ejb-`AV6wASw6(5K3ewoG-A9 zf-Fgkyzib3S7%tH67iHUG+H27l#K``p@gW2LowH&h(s!!q`AIz#Ji9YqcS1^G6Ot= zXiHzhq&^`jqAbmnoaDP1b05dZI`kvr_s7s~Bv_>}S269PF82F`L9C09dOcW~G|pf( z;Nv?0gaP**K@vV7$gpNyK1!wneOg*%j1iwmiNy&5Yz3M!gfvS&sqauwSa#S81Hv%#r>J&4#R4`HuoKv1 ziZ&_4&6LM6lCfE_AQRZqNG~;kFvo+i3z;9IA*PVwM_$9Q$gJEXc;O|}>j`JnEJV3+ zRscdbCczXu3A8Z<6XZokm=BC!@__X+OA@m}I8E)kk323H961H@+kG{_u%TAGW@C2; zwt<9@XuRKYT`A9&ahG(>7NzRM9SY;xq`bPHG2bRQK4m^GSsMMMua8Ebn69TO@h4`N z!*UGH5t0A+a`nQ6fP~K3v&HW3s?54az{zdLaLUxW_SL!r&)w46@%Ef@f@3B)#V}3G zZgo=30xTW)O9RIagn}mym#*Q%$m)nwW^8zRWNm^F0h2uEAn4+W@r{7={d?a(er9IhYj_AwEvBTaA26PrZgAC+gt>1bBwonUc9XZ@wOJh+Zy9-ofmI=LA>on z@V3Wz+y9MsG{=k-fcF67zB#X|lm+DYp}?$1s*UY7gz|ZuB}|U{cG|VtvCF$>oFB5e zNXX{=kgfS4TZ@Ej%@5h0AF};FLK=Q7#s=fz1F^xlIxpxC#D@0{xi}l%JLKYQcxT8n z3NuanUl);8$IUO+Ip_Gww;1m`$nj2I}x0hL=>&FY&tIhYy2Sr zq@b%*wX(+t%j2eAgq8priOHX7djR=W-o6d@%* z?a7hCLkJYyj@xpZdDhjNw8yw0h#dPQwLds~xvC$C0f6cK%;l-%Qfz4ElY z!C}2p=opzF=u5^9G*hLQx3zW8bV48(fo9f|tQk{1{tfR7qa7#o` z#QN+ta}C6_FdEhdmM6@I`OMtL-sp8RCV3`6dLHOC5ZuCwZ)j{zN$o;RL+aONfy#n{K1ogW4<8S`{!#scLRm5zP z2J5=LVu4&X^4{r!TyFZiyN%|3FKqgL!-KWq^mQHu o5rO|<)O(#1$bk_OfZ6CO1$ix7-sa!_m37^J0aZe1ed-SY0BvgV8UO$Q literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_112/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_112/create_stimuli/_report/report.rst new file mode 100644 index 00000000..c939605b --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_112/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a080 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 112 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 112 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012405 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_112/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_112/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_112/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..cc4394aaae04889f77d024fa4a407d89328975a0 GIT binary patch literal 2847 zcmV+)3*hu0iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8d;K^IChe0CuuSnj?&grDgp#ZQ8ra2rbUXzn13cfTaKi`fWVT3guh?`l2YPM zdYKvA1-EJ$IOlI1v6qOphH?w&p8+k=C}x4`#{|NQCGh2$^#%rU)F z4{@dwAiuBa2y;CRBMyh2=lVe$-I2~mItYhW5dRpj|08}GuSF~B2>IA_ow)XJVdm~; z>L-p?FS`x{(=vloZtQEG2b1GyWiNE}fH?Uvj+Xt<2}~Qs!-eR^BN!OcXm9IdBaROE zp=%@l*g}0^*W(?{_ps`E$WcAhLzd|v%$NI)sd~PvtHIEB!@*FUGT~Jm_KuMrsHUL` zg2?MW(gLJnh#6WYkTF7EOUTr|`eE?z{{}C=kCu^RD1=k=M=>Ynvx1lv3QF!lDZg0~ zHo07Jb2GOY6SI-&!%V{UhWxl%ugB3%zGpf-1oMI zv)q85-+MtXo6C!N7!WwqH?hX`A=KSkw<;@plKfb0b(MBkiK82b=pbju(QO$z%U$KM zDz|o@#L=fbTwXrJ$mfe&xd+89{sf)+rZeC%Nzn41Tz?LJAkkpt^V96~v6Unde#a&; zyS3kFRir(s+L3|aL(|?ddm&j^r7AyBT5WZfXW)@63>H|eNJbC<{3siiqkvp1e9b?FhLaJnqB zS1j<~1lc^7Ck>b^zmSz`qoP*#tGjAj0!}vsaZ@ak#ghEBI+F4tjy5jkkF&!7?yc

9Tasqzxu}OhR;xQX89;8Xi+@Fc@Kjh8>yxS!u#rya9s|ZP@IHJvTI9 z=J#wb#a_>*c)(zf;$Wbqc*59ESR2MaVA}8;N&=7O@EPUG7|q*D>Ue$U1p)SSD?7ShGQBdx0m8?f)qL-6V0Yr!*u<=&A<_L)3Sr{>xCSB9?*)|C{Okv+*`t5>7v1zc_q>U5C$jdXB zI&uet6#LYCtc@5G+V6THP8-;pqV> zAEXT*9j6$Ny%YyF#fEn>$QmXN=6l!xq28ajARP`G&$ZbJuxYWw(46B4ZLE#ZtUZ$k zyWLKw+Ef^6P-`ZS(xr|HPk+!VcP~g+5G3zBlR8SbTvw~jXL0n&1p^;}hBd;eItE*% zsy+kNlW3d8ty~WD!JX&j7w`eN58(Mv9(eZQ z(U*Vg<1dpA@-T&t3@DU@vq}V|)C5}cZl_v>XkYQJKj0Is!z;+QO$U@22K9^_K3^2K zbWs%42mSk+TF|vERTCbFYVm$i*g{%<(-1)(FM+tLNFAaq=Coa+j-=*p9DRIQ9hr`9 zg$Bs0cN?v*)mo#iw#y3W!)?aYcF#=9(s<7b2d0Dhf$e4CKRFQ$MHt7YI6!t5h62s9 z5Xi9)r;C)UO1Dk(_PY`!=zUhk?bgdOT((6bxZr21vfrD4-mSdVb+~Bwiwr;RPMrp8r`}AO1xfu+9j?Rl};D@d<-LMy;ZKLO=(Y&K-DVMCdnuy z^R3+M1k&j?6$w_A)WqG3!j?#LQn2?fggrP6A07@fYkSCWeJzvUTF)FlKl)Q9siMTy z`&5YNZR+H)A@j!{2Q1x8wB6^uJ<+ zdSZ8&3%$Co>BG58aDf0$+bO`W2&P@p2bT{HUY8E2cgP(hKatvMt=@W6uE)dE=%dP` zuAJ^g1eYrnILATFeU`it@U&pKbLm8w+`@~EvIO`4M@gk&&vh-{)=Y~z&fSKH)8qQ| zu(~q6Rcl|vEvmwO_cIraH@(wf2v4OjS{b@Ha5S=vD_#){mxe3RiU-9G&S2XS>!uS< zvPEu_BkxjjIj*ngx46muqFO9uXFp>z7-k1>RdkWd!-Hr1#d4aqQSw4T=)eL*llIeJ1 zfRoof@AhZ!uv8rQ@&4J$!h(VNnfbR%YTvZb+Uy0?M#j(rO$CbUrCS;J`+R1d5h|J4 zgbbOGnGTya*&;F?IpgCD{PT=VGSK&3JL6)GRKvN|v1>ZS#`TU98>6p6nFyI3m<5_j zGgKXq)?jq)oWw?E6^LcOeaVxR@KdY?8a~N3Y6_X1%?Tj06rvw9e;u3rc~Lk9<|u7gpq3PA^&>5yN`#d!7Th*Ov;;x+k-*WoLse8o5Ao4+RC z{B`)|Q@;5(2*YiD}Lq?{AE5LEjhYe@VbPP1v@ik|F)^ZyK2nCuf zv>lxG6$|U@tOxRVILIA=ql49NUw-lJ%ar(eae{}V#Ohu`>fX^t=JF76b?<0B19M5p z3{X3dn1PT-mqH3xhZL_4DPAX}cy-A9)gklO37Nk-WZ~+Nh5sWYsgLVb1M%=HRReML zrlfzRYWT$=uU`$nIOO%K;b%k6Rbb%$+%`tOEaAT<#zN)dmPK}|#NYWJ*|zQ-2KP2H z)5_Y@EQ~fXL)b5oKW)ud)0+}VjDJl6o^LwA+G@ph5NxubQ)V7P?g)ZNzG}_rkdyNp zd_E)QJbB}h9PlVmPc*tmuj)>^u{s(@DHFLQf000)Pn@Iow literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_0x8028ec2ab171cdb4a3620d5c50235bdc.json b/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_0x8028ec2ab171cdb4a3620d5c50235bdc.json new file mode 100644 index 00000000..e1de856f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_0x8028ec2ab171cdb4a3620d5c50235bdc.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "113" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b8795e210f69b6f0713c8cc8b65b030f5ae7842c GIT binary patch literal 590 zcmV-U0|d7+$t9*F6Oy-If2dG_N|18|B~s6D-BdU$afKYw+^kV9Jy1XivjTJX z<13)fn?p7T=ipEPbOGqYxMq|~z#u800P4dE&;?3PYe0q1pj-`EYl?}^p={md6lKO6 z5`vkk@)f1XaKQx~XOjRZ<bFq;P5;Y`z@Tb(L>rfGOG(tH}8j5MEyN0E0X zP}0ZNnEG2q;$4><&hM`*y{Wo>!_jNYzLvHJ`pLS4l|UX?seOrf|Lg8Fohr~JpHqNw zOr&GYDM4zZdj_v+=7{=}XV$f;#pMn*wQLwI%g3FtLK+Z%)86p|O3{{vQ5$N=Q ca=gR@RzV@A)9^!_1a0I00q^X1wD<@B0MHO2X;xBEa@itN`DpJ#7DIkNXAtD?6m* zOI&zO=L$h2l85Jf=kO!_@#jmw|8wnvee`FHrY9+JQ<{>PGU5`}GcU$NB6EG|0N(j; zdF_|{G_UGq#Bf4#eKimSD}tn=Nfy&wucL?(fkhCVJg{cg;MC?*3E1IQ-_ z`#5%(b@MrA}oWCnN! z(Ux{#QlF3%QI=*(PV(K1d4OYN9R?8z`eSG}60FjgtC;%8$3dSkh;{K%uLmoW#u=;z ze0&FhFyOu;NWupM8P<%;N6A#6PfLr8F%l3du{c41tw2+Tyse-!!XiYFXdi`GVF@4O z@mtX9#l(<`;1B`882jVVO#;Vyq~jPqB)olDadRnz26PLxu)KNVDXV`VIw!Wrw{mAPlo$ifY$WEMPMMJAqB6 zXp=(ROnDq58JiUgGl4CQ^imTDb3Ew!kohqhVhS04Go^VFZLX;b4 z1t9n_38&ympp7Y*ATKh)0$}`-2dtM_l9(03X=>Mfn4+W@r{7={d?a(er9IhYj_AwEvBTaA26PrZgAC+gt>1bBwonUc9XZ@wOJh+Zy9-ofmI=LA>on z@V3Wz+y9MsG{=k-fcF67zB#X|l!fH@p}?$1s*UY7gbH|^B}|U{cH6buvCF$>oFB5e zNXX{=kgfS4TZ@Ej%@5h0AF};FLK=Q7#s=fz1F^xlIxpxC#D@0{xi}l%JLKYQcxT8n z3NuanUl);8$IUO+Ip_Gww;1m`$nj2I}x0hL=>&FY&tIhYy2Sr zq@b%*wX(+Z$)Z=P&b@&yU1xnjIFwMfLP4)0Rsm{9})=^nQxFsSe zVtw|Sxdvid7!7L!%M%vBd}eNAZ}hqulROh3JrDF62yS7;H#9bj4QK;>=}HywmUPnz~^*ehsA;o@b?GC!e88Fl?eufTmQK|Mcz{LNo~nCDNuikMB( zU|qLYERf4a-a8K(%?BiCV&A*(1)<-@t=(oL+zECX&DM?|2B5&LJ>22SGMgogBKkUy o!id2CZq$376Uc!P5`x+2Dg}8hTi)j1{+;>mze6ZqZR!sI00{WuB>(^b literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_report/report.rst new file mode 100644 index 00000000..b913822f --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_113/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a104 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 113 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 113 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012502 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_113/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_113/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_113/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9b3191052e57adb0008fc6e256d08cf7f6e73487 GIT binary patch literal 2847 zcmV+)3*hu0iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIChe0CuuSnj?&grDgq<`Q8ryArbUXzm|rG9TaKi`fWVT3gs)%$ic;cE z`1`df;Qt^O39hmXB=9MVPM)Tubu<&(OkA;6=lcHf6$VIO-oFBh)NY zD;7oG2#_8k4MWVxwt$Qo1$s)R{?+$?|JRKV|M}l|3Av_9IK{se3WAs~3i+a>7VekD zjdF2=lf=^f(!GS3jjaG?60X;j$F)WyiEr?I%jF@TBgmstQxv(~(wdc4rC#eM@mIEI z=r$j@)};K94;`Q9ox(0L4*v?_JSmS=drA) z+wGRxZ3By&*3k6=WJW&Z`}S_Nt~G0|p4REscI4e8z7C@f%ERi(EJgmhmc)z2LZLu< z+KSq$G@<9$e%Q|!L_vgsB4-5_*0}+Mx>N7f6m>^d9&7EM+UcoDd~F}?6`Ul#r9fw; zr#{w{_V$w`{*;Hy%SRXmd}*_AzqH98p_9OJhdd?;TG~+>&%qBQ8jJ#dnw>o?l#+1c}K2w6(IP~a<;5~L>5-9DNodPN1Nptc%%!11=gyv+J=PRO8pXVuI_qC z{C4MgHHqJwFDW3>XxFEUUZ$NNlDwT=!dWO9;to5izUaW*rDOfX)?KLCYfsgN{0LGw zU6$1^N&GiqUgSj5fXT`WMXfcfT5Y$st#xGJbgd|C2qm&ulD~FWR$nCX`i1;)P87nu zmEWDk(xY(1HRMWrM@ZuL>6PgMXm@M$(k$1jO|4OB)uC44*6Ar+Puq;v&J$)a~X2saVF*)(i}{#KHqfEE_rr5gw;aq3i*W z2*6=#DV5PAoi3EW;6gn}agpHRX@>Q{VDKTe(W#9+(kVWb7(8OILybb4P7WswKJ_Tx zr2VIsPjQA!3K_z7z+e_q*G$Ay$OVngH2S9kgQ?9t7MRJD7wTs?@SO}FGATZ0Fk&!f zaKK=lSqeN!D1VPG%kVAQV6w*~#Ly|VV~bM5#}u0kM%bib$JSt0ny?ms$Y4Yp4m;w^ z4Go$3eaFwR-*+e;GT5g$9O@aKF!mGHhVc)WHhhTw-k4%`ZF8#@ z7^5SKj}gNa8g$VfvrxyED3;i8Ok?czGyF}MK{sNeITY)du0L=XIHqm}wn6R37SqpS z>T_sk(4=r;&`6VGGs7ngGlN+zat2Hm#tf!O*L7pIO#+TGIIx+1N75;_Ocq>tdG&G zJ(C98y>7SGQW5jY>s<|={-9OvoRh8~NZxrSchz2{q19T?lK7Kz1_1&MYerLb z47O@bdj_f})i#Tpg#ze<+s`X6;2B)isaU#1=8VG12NP$(&9jR;D)1+KVDb zSQ0i3K`3hX2lsSMGW1PNFWwil(!Ek~6Y1iHDQrL%K-^X3E>RY9+AdW`a%($@Kfb7r zEZ49j6Xeyq&Gy$?z1h(^6&3X11IEF|I+W+<^r(dkqzoc%$~TM_eze-5&V)7)G>4yHeF!@{THls#R+( zl2J(JTZP#Pq}yw$GOQ}Ci96?oEs^G=VDFv_ySE=b+#lsucaZ4?dQRM2%k4iu_+2io zqSV#<7pf>d89eIM<BuV8aW_xq~5{p(vvD2 z9>_^!kvN81ijc2X)QUFkcF*0j-1NHQkscr(w(HQ>k9ag8M`=9mE%ReNWq8>zt&XXe zY0nhHi2$-&uWk3Lm8VbvMr7*TH^45vF?Rp)*22PTHW5;4<#W|HV>+$FUu^J~DOx;Y66;!i&v{4EO&>X{BM`^K9PHEt@&c-GYeI ztDkys=(Q`uq*v070Gu zWLg1v)iX)HkFN&^JLDnywl^50gJBf7h6m4>ZYd!ywr`U0zr)(I7Yfc1aspHd>v%fLhO)dZ=qaajkqa2Y;W>taHU` zZZ;uDCgi5WmP59PoKMd9I0yfHGnWnw0?)~Lm?PD2W_9RUF0t|a!_>wcXiz4_+!o9N zO{JTffyb*bx_U-pJ+}hH^54GX$x8Ss)s6hZL?7Qn);%czHU#9q&}`z4aCFGR1L({ zo09&Ss^KSxym~eK6g4E xW%j+T6@Q>u&q~BF5XKb+W%VIKPc77D ztBZo-&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMd5 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_114/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_114/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..1979682750e1f91b9d86d0b9824ad3bbc78c5ad0 GIT binary patch literal 1292 zcmV+n1@rnJiwFpT%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpG-QG zMPg67U3=`A-^~1G=I7Pl+2(uI<35tSxGW$lcmaY-h(M0QOR5x%cdKXk_P_bVU;LFn zaBD=;9K744ndGF8wavR+TF@Cy z;QDD)Nvt9n7YJ!Bqr%{OC+s2wNUYN6#crFa9NOmsGNo;dAj1K}-{9Ge?%?>O-|2MF z^RTOxr55*B`o46VZ~+MdQnJFllW0I8(NLfs1Yva<%q5x{mX>)@`~C61&9x=fg(0c{ zNoHxmRBSW6L~^i9VH`It&%s!l7v4QQS221dxnYo!AW$V*TX}+)#sCH3vM8-t_`4@m zLItT5CJd7C9NPVy+CnHRcuZoNj6tHUTTe$L%uFFl%m#kEKtL36Kh}_|36Q{*dH6Ui z8Tzm}QA!C37(?|XL2Nae#^fW5n~ds|prd1wQcDef%;gVpH4+f`1T-ZGP|$cT-K%05 z(n&CQC`3sy7H_CKL;5z1!=Y4zLUink4gj^KQTCDDy27g%aiVGMeh3 zI=H;?tdvRR;JmloZdl5`clTz}=V9w*0m!MfuiEkJ9nqFYofwoS&>9EsD00uNZ zg}C4CKY7yWot~sHOuJbRJLzt99;alJznUc@*GhZ+IO!Y@hjDi>KrKlZhA`}Br^C2^ z0{z&(#UB$a$N!W8{xin$|D28AdccrMfE4x4rW=NNjms1+{MT_ANB;nLW_*lu2><{a Cn}1sX literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_114/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_114/afni_proc/_report/report.rst new file mode 100644 index 00000000..6693a0c8 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_114/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a048 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 114 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 114 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071345 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_114/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_114/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_114/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..43f1a8138aaaef88ddb8997f68053595ca2a3d72 GIT binary patch literal 2542 zcmVb!>EBVPS@w`d;=@NL<* z{(=JAhrSjl&|lKO(leB-8QaM=FKfWiH)qbAIp@q7&NuU?)xZAZ^Ofu`x#^MMAixsw zA{-8pg{d?^6iYM?0zZt>){rI0`4STl1+(~{_%oj_!LNQk;8~OXSQl*wJNcXCR&3rXw zY7-K|Nap4_{js8HX>vgx5Ko3wjvZMN#|dQ<78$pgo?kR!()nbjW3ksHX8 zx})S+TP_sK)xzBjX8rH$2Kzf5t9mbr2fVmQMxGyH zI}RY#SN9uDv!%5AX1Ay8s{3hj9(rAzgXq~PU45aX$!Z~=&ofC!H`?_UNInmuK`vh^ zmY|~`k&sX%4PmNl&Ay@=yQ==!?DUOp-$;{lukg#fnnqIH_{ zpx3$ZGnTibC0tC!r?@8e8qd2hc5R9d9OOZ{o_lI&>LWsEPtJzYCKPqyQlIexp4&BD!0Fw3&qh`($soqx0oi^ z`O5SFbb1P3n)PO*Woq?y6KVx^O<$M##%}H&Ed1jR3;a}0*895BJC&5x_nEk$>1I}! zdbkdyY;~(#sL^;7alBe7`RLPMo95gz*xXkz@dPV5DFY3+<%{kWd(#c zgzO0ku@HA{O1Nuu%CRkAOl>~xgbWv@39$qt0b|~9#UA%q*GL#YaDycd1}?`V0S6pM zBecXbL4PLd2=)QfDf5NdC+p(yNg3?=#r&#b68a!xU2-FSA z9GAuEgvP`lEb+T&3B6dD&E*(T9)IWxaKgff_(B^Pv@tI~*dx;MO z&nzKY><)!2Oa#o6j*zwZOahLVaOenfw~RO@wulLDycLv!l7P7(e>7U+kgHG8L{Q;! zKZxnFL4(;6&uB0_YWxwtyj%D4wQs&Y0>CKWF0t>}9EW7IYy>EbmW>dq>K3ZZoG>`cRZHgv%(Oyu4oqn&Uv<-n8G~3xx zdcJ4E=?`4x+6mSQgyhnm+B5of%~aZZY4YU>g%ATPwc|N4232a<4MK?QO^->z^5(A9x1-hA~E&VP2`xvyS-`}-mNHWRSJ6a*W< zP%@uQMkv)bxTWv(6a{8`Ap7A+&bW?j;Ls%=Ff(d}7<+Q5Qmk6VV!^yWyob!Pg{meh z+%KAydzC^Jqtd2b+=MIuxofCB#w?C;yNn&F?VU8aahe?w&vIfL=+)&`=Y`p9bF^5mi@y*;=HKu&7~sc;Y0c}<7{nsEEj_JH@F zfrvigC7`xdAm{7z3Mc~!y!_NK)s_i#y00L>r~*osCz|UjKR{tD?-*^;1=p-3%V}n`(Qv(=huz z4cz$cIEn&VlVzYPtZat9Ee$i9FdMrYO03?&?AntCTprj>W0e_(EybK~)Q!417kel6 ztTbO&Iz}Ou;d31Y=&g)r>=sSu(waO$nTH?h=G8H`GMCIT+z24MO=YLws6T}YuwolY z@4&lkW9P!Scby>(mAHD%&yo6SZqLwa%lumW~gSFB*^f`tn=EaJ|uhdmPl<&Fn=W zK+$;n)QvFP!mF*i3j6^95{C6ZYNzSumLd z2hkW#r8rq1`!w5JwA$ryy4ztcE z4n50jrg~Xha0dk zw=Lgw;V8bl5oV8O)C8CAZY-Xk?rzv9LQHh0c5ws#h|4|$teZVX!TFI%7uwq!w*ck- z@ck``Wf4WU7aezwv=)OTHu1}kocZ;9bPy6Rx_ztRd-&F!ixB8yc$&06=B14bWiE^` za?Q%#UQrs7kVX!kU^whA3I3#s{xQ~>ukvCTe6K??!8W&Uve!GAPXS-ZwMCe)+J!=y zJ?br@WyIlQCuD>#V>vd3)vuPyGSvE-A4l1uCtrQ&!8E`YJ3|`>uqB9Pgos4g)|d7+$t9*F6Oy-If2dG_N|18|B~s6D-BdU$afKYw+^kV9Jy1XivjTJX z<13)fn?p7T=ipEPbOGqYxMq|~z#u800P4dE&;?3PYe0q1pj-`EYl?}^p={md6lKO6 z5`vkk@)f1XaKQx~XOjRZ<bFq;P5;Y`z@Tb(L>rfGOG(tH}8j5MEyN0E0X zP}0ZNnEG2q;$4><&hM`*y{Wo>!_jNYzLvHJ`pLS4l|UX?seOrf|Lg8Fohr~JpHqNw zOr&GYDM4zZdj_v+=7$)uhV$f;#pMn*wQLwI%g3FtLK+Z%)86p|O3{{vQ5$N=Q ca=gR@RzV@A)9^!_1a0I00cv|^ocIU;0H7%#B>(^b literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_114/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_114/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9d15286ab00a149571ebf8067121e8a6d6321ef6 GIT binary patch literal 1536 zcmV+b2LJgViwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~31jl3vgb!yW|p zA@-KaHzjR06hna^MX@b=Xdi~920=@d#aJR$lCqN)0k)T71^71YVf#n>75ghYq~uFn zWKHV|K_rrg=X~ezBmME$OMm`*{epe;myD*zDREPpl9)2$64o;>#seaAeQ6)w`5$@h zxBMip>P5tGLUMi07X&MUq@qa{(_F8jh!TN?A06lV^T#2hC>7jCDiS>FMW~39>x+m6 zxxRIJx{Dj$!(1y#-XLhO@SYjBAaM7a$N{aRI4Zt4BN`^~0EiT&OO9 zGzOBs0^8;0cKe~%Xfz;w(<``wqyW5^XL^Mk5g!0?W-(taGZrKTKLA3B%!Km=mQj!; zX_5E6)8Xn2i&P?>5{5<#1dFm3!6cLr6>%u$3KWq@g_AVbw-0$2GGbIlBtT|>XAo^+ z3nujmNfBjfrsO2w^_crOM%JMp5x+l%b~C{$jk$_x7j?1UCk$d;eBA57%A|1ys{tQB z03Zyw?+TLe0YQc})L9Zk(xpYb6>10tkZ@=1M%g2J-HUKkLDnLkCf8z~mBnShogk8w|2n{iX3_oi&42#UlO@bF*GQFB`M$JN$8)pe1 zbYl`s!IMB6Q!qhZW`y~`_=P60US>&RRtTr5UH6g4#eyRzKz_Tg1{gNfQnS_A*@kT( zAtV~_w_I1svt`^RU9&~0I(CP`xHc&-?`6!l364*h%Oy*rU-XU9=u^}6EG7QL>`GXU z!8s!GpIO*IT06~Mr<~xJ2~IIg6SG^L z6te(J2maE)u>+ytiNmF9_%O0MGguAD=uov+p;W2u>}gq^snh;ugf7q*H#>YVb+YN0k?2;?K$zb=fT?^<87Z8uQw-NZyvnf z7_ayLct>;0NC9{kFz%W2s!CZvjvfijdZgOe^dOYa<1Arv+_&x3YSSKE_>nnibimO; z<@L!|uTRFnN8|(#9c#5=L2Yz4op*75%nc=$wYFs{xE`V+C?gG0{Gh7S%oKO5c~@)QF> zLBHo1v-0$7YuwzOJ+jP6W&MpFb8KzAP#c?0!K^(aR5qOm&PyVS)@e4K7l1YXlmJrD zRjOLq<&3}~3o@wm2r9YR^g!5*;N<$-bIAI-F|UJI17(fldLSE(=7Y9Z2MLOh5}@|v zNZ}y_3U1qNyRAIy>UG*@{-*#I!IP)&`cx%!m2R+{WJORWl}eCO~@b>lF~(!isNbtWQbpLQF&I*Jpx339b}X zE1iJKT`O)n2#cOH?K`kn(2&B#%a~=|geqm!^;^9J_pt=^y7`mu{`t#1f9qw$Y?21+ zs=Z=?TsHFFX?l$cJD-kY324vdfh%tlu!$ZOH^Hvb-HUH3n2B}_@`4*&pw&*uUF literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_114/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_114/create_stimuli/_report/report.rst new file mode 100644 index 00000000..66663356 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_114/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a048 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 114 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 114 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012435 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_114/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_114/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_114/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2435915d7acfb5218846554c0d67187a2ba9c5ce GIT binary patch literal 2846 zcmV+(3*q!1iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}DYT1&VIJT2%CuuSnj?&grDgq=3Q5IDtrbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`_PBX;4SD=`y2X~`d4}vq_9iLN}MXu*u%5CckexWaj`fH{B7}{|M_$w`HMbtOz+e~ zoaqF}?`t~3Tu;M@!=dN7eh^3Zr1Oyu!l4z!Kg4T)k6*{D(Xu*1J~mw^u039uxx1bE ziKCUvuEW5z%;1z8`&MZ%PbFE|Z8eon z3s~GS2af9_BlIBO_x39_wNY($)pn=4C+)}4Ef}>?7FJJY$MYN|BUu z`EP=3fh&*(OqO5CO0`i@tNYbmwJiasn|WbFD3ZmJ{Ixog@+ywjFXfN3!vOBB?EWm4 z76wDEE|pt*LL5DySEd7?)v3};vs|k*)OxvDgIa-Grz>+^WiR^(F8tFLS@@-#EO+H< z=TcG@-{j(UT~?F2l;i#X-db4j@lLK}m^-=rc0nvzP6CQ0d$^O!l{|At%xxD6CF~~s z8zti$^o;4yb}nDi8SMHA&J%1;-EMA+`4SFyW?-;W$Zd;-lCF^u!8mCOB^Q8501gsM zv4kecbfNSG7ifNh^8^phQmpwpgO90=Ms2L2M)8@*;30!;Y7|&>axh`=nM?5|?LRX; zic@4z$Pl)C2D6a5W+I+JE@*V7(K{0uOl{_|z)YsRP%p*4XQ%j>N%5G$h{2e_K7%!8 zDexqr{9U>%-7{%}$sUssU8B^-CZ&eQ6dMdi*q~uYW`9J7Uib4Vd{o z+e@+6vnd`h*rPZYXepjB_7m2I@ei0bJcp9Nqd9y=xiUtcKB4{Yh+=kabE_5@qZ5k9 zh~Wwix@ebKsO^aqi)=WiF>-q;{w7GF6Ee|kiZx8v@7oL1Q$ZIj~Y_ zP&mFh*X1!PJpE z7^K*z=3{Ndn9zRL3vt@O-Xz5n?DfwZe}$cQdn;G^;`4I=vhpOwu4Pc{n}f9BX?~D4 zd~}>*JoZu?*c2Py$slW(IGFEY1B7~i-hy;EXgt?uC%~q~4nuQ}BebzLLbLWv8tisE zooZ8Iq(QBjJW6kMRCxM>R=Iycx`H5i_l49^y5+iBZN7-3Pc9hv2sEq_PSr8kDpmCb zsGdaIENL>)=Z-8lOAvN|#y-3kqm zSMN1iU#qo7TWyyW(1+WMsqLPbmZkBY6%I@X^8?$wU_H)-fEL9ef-^b zslc=l#^gZ4;bG>F$uUQ+E4y`~Za;amx(#%T$lFCCwB|(C?=D`HYUc$U1R$rSJePk2 z*LjIq1vKIGQGWrt{~cJ-`?Lh4rUc@Ad0GJ?h`{%rE2`8`K~8t;MDtH|^ao5$!Wp5} zXv3^~t86i@L8;t_1vR>L1(bNb`n*eAFDjib`1u${)OxF2QJd19B7v$^s!ftnNaj1a z*$Jf6Z7LG1DyfP47lkd6=A>XBUI=?|7(PB6W>)u*;rd#pu(_5we0lVTOj1ROs|S~= zC^;EC>DHv?UaO*ZJ9VJ(r(qCyxWw}yRY=+NU4!cX zhFgk|uauRtI_-8Y+_T*Dy5gbcBObQvz|&56G$BW6Jnb#qXxulzF1a!G|NYLw!jEhsq|{0ms&B@0T8F>d;IGH&jp={G2=&D7 zFc*4tUDJnim*4^coVHVd-w;f@q7N<~9K0?aQ16jDMt&x>)mpvvq+E}Or_o21CtW$+ ziwG`PDsYa2n)@tyBj9PlaOcvAFu8>n8)XUZ|BsSN!=CF}yseoQbDX;i5vRxX>0xzw zdaKsHhFesH`|c+$7;k!~!4RHGVYEDSao}iV8CSd_7~UE#N6Q`*J2-=FN2r@lILQ{d z4UW7^$>q4dUfAR&kBVwh%+7wsW-!bS;Hu~XSAYlIlINpQ@&@Shw|D~tdG?WE`s7v5 zB>q0Sp;74BZY&_c9+}Z*T=dZh(VK2I6I$jvy z4(O02N@|hi&1)54T zR2`32VRZGJ#Cm20h-JTh&6AbzQ>+FWKFKy}3YneF+mh4d<$>OSG*=)@j86Pl&|>Xe9z~QktyK{aNP4@!&x;Q15I{(%^9H8+`0&%K$C^G zgVVmExVFZ6AdiQG+z~iBSo!w#7vH{4iJuoIcsNR|9www79<66C4-r=nkJd6UmxRm! zweyG>2zhiVWd7=q!qp*#>x2}p4q3Q5WZ^m?3s;8}uMR2xA0bJ7T(264hhL}~h^x0H z{R>sY&klM0YWUe9uU`#68FH=y1NW!4G4f>z|2Z+vS1xW@WT#5}o&S+->)~PWa6L1v ztUb-bXgxE8{Sx`p)_gU+ErG=Nmn7i%rW35LR9pwaCJQ=c<`LvhJ};85S~EK200;DmJh>bI0Bmb|`v3p{ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_0x5127709ab3ac7067acf4cf436c3a5c49.json b/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_0x5127709ab3ac7067acf4cf436c3a5c49.json new file mode 100644 index 00000000..2b1774b7 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_0x5127709ab3ac7067acf4cf436c3a5c49.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "115" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..aceab530517ff969d20ce3332d0c9c117df659a3 GIT binary patch literal 591 zcmV-V0E$0Dzf1A%ON(7RYf-WE?`n#k;SV`ht+$jkSeM1x9@ZcLB>l+#R zMkc<|!8bbAH#YQ*O?=~nZ~SlHzD7rO!ZYP~&S8aYOmg&d${|@Gd*a3lmC>@Uh&Vj^ z6g$q{4qi#K`6N+|=GJEWezQG@_rs|=Bwg01lNu#1cpTELMu`JdtwsW+))Rq3CXbN8 zFftrQh9<~x7#R&CBNJpajEsko@qZxoe3(sx?r@@M(5;S@KG8Hh8)-fb&qkV0!;{E+ z6Da9ZYfSyEBJrV14rUKmmflodzy9d8HM)``7wjhM9F_vPV5#;c;=5n>r|DRMF8P!K zjAJ5gYeorDOSWxZ?>n~5%OLpJHfOy~+kEwxv_k%>L<%mieF8ZXDP@SH3^P<>f`qTr deai6y6IlAWm`sAtQS7(1cMEVNh+X&y001RN7z_Xa literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d64c407a09260ba8f539c04bebf51d70a39e90c7 GIT binary patch literal 1538 zcmV+d2L1UTiwFo)%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~2~NZF)gF40{mV zhuB*xUz@ZWilIP|qS%%_v=75lgP{sls?2wXd z$A#B)u3$tWd3eru4nHye0P^Yn z-Vd2xOBIdeROdCy6cGXT$h0-MM2e$;Mu2NEz>$Ray6FW7#8X^ADp%_vk4gP7A^{hw z2Oy1sq_4nsxw+kb&}lRpkiO{^TtQL*zLTYTg&Y$P0C8q9uNN5$l7Jrop+suJc>>GO zPva!d`|jCrb%sSE5l;w1{I zTeuIC281MtvLsb>~ge;ofL;!`9L)CxYU^AdDn~=oQdSDxM(DpfW-#WbMYtrbY!3DI1U8 zNTpe|2rCNc6Rg6Cr0$ecQ#N4yh@l}7(k%J7zDI(>vcp~&5{8*KLAC1%7OC3_edDmCgtV5lzBG6(J6DeU}^Z1zFv+#HC@jV;*HI& z1jQJfBO?3p)$)Z4J_($&XN%q6Rhjkp1Xy$)7*86367cIn4+W{*8e2gL~gUd2VLkYcvs@T1-h-$zjFKi9JrI_^8$3lO&HSFI1&A6}1ym)(CIwym;Gl;%(1^w>`q!J}=(RoOnC) z;O&g?cK#c0Ime9TfOi4oo;k0ol=95Zr>+8n64q^?IHIC}OY&4oX?M@veC_+kr z+LNWiLkJYyw%c}FS=!SZw9mL8h#Y$)u|n#tzLE=lds~xPH>-w07!ti+NbXU;UV2vC z;ILlGb&SmR^(A8m8Y_Ic4@v1Y)aR!_$9+!7HK zu|9pxTmdmHjE1#==krG;o@b?(q2rJGV1!RUV{5rjQYLo$v1!hVV*zrGGaDK zgLTzju|O^xdGFkBwsv+J4{@)Jy`9GP4)%f${My@I8{hXj4?%%jd$_|DWj0F~hV)Gq o`XPb8LD+wj5y*iN;)7Xvm4dt$EpM}L|4MuAzv|gA3hEC409MHL-T(jq literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_report/report.rst new file mode 100644 index 00000000..791153c5 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_115/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a082 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 115 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 115 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012539 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_115/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_115/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_115/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..d5ce116789c267f173d8763e77f317366f231681 GIT binary patch literal 2843 zcmV+$3*_`4iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhN^J9d(3n>3jWM{a8=6#){UD2c8T(;`J<%r6t5El1K|KwwEi!dI{WNhxus zeasBrg1+@PKB}!-&J7=ed3mNB5-jkq*M46~sTpYyXO0$E(q@Izm1+T_>(RUYNPNmHLUJ zmCLTfz_iTZlpFh+=fUJSTHXsCJs?hgh@&MxbOO^x@o*u!@dO5jG}^oR*odP8e(2hW zKekXG*!6fv^F6G(9&%LA^pIsb2=nE>W2&C->S{3b-Ec5er%ZSihrMH@2dZhP`TPd2 z`$!9riXmobnLx$}eJvqV`|A52@B9&sd_l==m&A=yeuK+x z3tPqQn3#=BA7&D+H{_?)dOePA@jcVwA)iCYqg<6`snt{)M5yinN8uO~1Wf73Ad-)+@f9i`f701o^R>8|DaarE9(Nmh1SO{LQU z7PrlT-e1 zXL0ly50{q@G4lE1W^TK<$)BK8-*g5%CJ9>Flj|?R4U)@#P5^%ba7dC_rru8|PIIB5zc7eIjk93+;7 z5}G8_h0+&Xp!o^T6FfLevF7UxKBhJrwXud8#b*Tu4;gGzqrjq*g9(GrT#7eo|C#Ag zoFaolhOp%`n1$3e6Y&gkL8CK`-kHE)YBP@oW-{f4dMWljJH^LLipLB_48{!h8LTl& zfhP&&@6u)Io=F=__Lzj|8l^TiDK$K%*kCZi1`Rth`?J!7wRi&tBigXp5qoZEz|8O2 zUW&b*P4R%i9>u{xOYwxUpRhKJf55ciIg|t*&EYf3l`-=43GH`B6tioaTeZL#olrbR z3|DB-MZ3&GZLdIafeptrMs6>~-vlXiLMEC`v4-jTeVc(J>ZWh$)P7_#{Vb+F2UZFV z3MV>^G#MKyK4qBc%xaO{XR9cJTaG1ir#q`?+jbhVau}K>zjFBfYm^yL? zgB1JJe5{Qa6WZ^3Ax<0Eo1}Pxz5aRQAF%U2+Rl}}cyJCtR-UBTwG4`VbC5PX%@5Ls zkB(D}$6ks9n_|N|8DtF;2lG8_fKczxTaXS1jpy3z1lY9LVQ9{Agf`YjXx5%dgWYbY zQ*A1YG^jO`N9oOu3QvE~D)%o)R}ducy^uOew_I1N%@=X>=>-EHfrd50sX7K*rK-LF z)stwO#m!s}^ufKC83y%?99}F6o4O$6 z)$RV4rWSNd16-D>Oh} z-D$MGR%?y6+Ab@g4<9k6wtHq;md1NlI4~W|4{R?B|H+A9D8M*A#R0OjFcfH(g+Pvd zG+m@zRl04Ox8Ic@K_9R(Zns{R;j%3f!3954mHqw%^p>3!Hi|Q;y<7+LR-0t$lkdJu z1*U~CCI=D@4>NyBjyZB&*{u_G`{|q2ZJ=93-YycMH7BzEaPgv4J1^iM068t?x%?Jf z=Otzp(1g=R{RQa$cVI>D(-M%H5{UEVX$2HO1m1bBs8T}(Io+)j%|F%AA2KxwXM|Rx z4YTg8vc#cG{ZAyEJ1gci4Hc3VyneXIg zCy-9JsYtM@q$ciP6t+Z~lY)JCA?(3n`1o*`S=~d1>uVWtb1ifD^61Z*q>2((A6%-U zHFA!XBd4X&T~glOb|$dP&nw@c3|aCjgmjYZ-Z zZYe^(QdY|9wA;CG&vMi2iietyc-XE3Pdnk!gdC;uw70~Mw1nYR!?Zf4UZy=$3?~A} zZmqi8t(2cb1?Zunao+&D8_iBwOS* zIPxwfm*e`nxXDenifXZto&Ai>V3-}iRnY}bga_S{=c7^b2I#?Cya9qd`^YeT@~USN ze;?iS5w^)g^j){#PX>d~cXSt?EzRf_JQ@7pr(W@F+ls)zQWt`6|c!xybfP6 zg#VTp=PMVtEV5H2{?7l%w)OBZc(|UKR@RC!gOSU$tg*$jSLFKA#bD zp1ko$j`;=#HMc1ico2I_ZWtu0C;IHF&xRh-$sw|G3YyT=6<;$0WXRA8s0000NfpGu; literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_116/afni_proc/_0xe5cb75ed33128b68ebee5635ff6f015a.json b/Afni_proc_through_nipype/_subject_id_116/afni_proc/_0xe5cb75ed33128b68ebee5635ff6f015a.json new file mode 100644 index 00000000..bfa86b24 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_116/afni_proc/_0xe5cb75ed33128b68ebee5635ff6f015a.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "116" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_116/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_116/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..851da6c115d8890d9ac4a3ad10598350ad7e45d2 GIT binary patch literal 305 zcmV-10nYv(iwFpT%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77D ztFnUP&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMD~*vvXd1vAuUmQ6zY&h~ziS1NOue`_ReGEWH6;QjAQ0NilNaB5w^dp$%(cz?Tw2f> zP2l=zR7tEN85am?HKW4ddpqnR1W2sX=*7J@Q#rKH1Y}Cv7(s>uhQGzL>)k=`xZmk? z(DSgXm8BNl>wJu+4mL`jT{HkMT97RatiHRw_kIh`ykfEjjgccD0ma zsiu-lK%0>AMSQ24W7?7B6OdFUOH_MMP>m&o>_j$&pe+LNs8B)>BSOZ~Qqzh?ZUt*( z`+Snc==nLBQjQ+J-|Ykzh0HCC*IG)qnJdXdBAUWkLkO{ebP1k8+Jt~<_^||;AmdlM z$a+)edB_kgiYo6jjjJ_BE|L6IT}>z!)LQqj^K5`+V9+F)*PC~{O-Gq;nJAPfw-?b= z2i3vl^%tc~DhKDiP$L?m0j2Md?{40g5g}K{H6oQxOK}&-v zg*73z2Q5>^XGqI~R-jeb+W&O3g%8g|MFw$bMaax*w>kZJYZt#h`RQ^usyVgS2=-^E znoChI{KE|`zo~B*m>9da`=yewyT6HXY_5Cv%?;YX(q?e&Np!md%@V+LF6hn7Ao4Q>2$io zULO@dB*bbYyO|N35G3#*>P3gXjNJ|&Nu`0nc>+bnqbql}?sL_MGX9Og6TdOHy{E53AP9xb^d4le_EizJe)-d=yeh*)x^kOAW>l%M{7&2kHXU6xAYAM$ zwVS%3pzrsu*+K8`)}d>ZpzE3Y?ti%wIF=+u9Y74)<}0l>jN~olQ3k^D37qocpg&%Q*T6h}5%|a|r+d D0VQ>{ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_116/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_116/afni_proc/_report/report.rst new file mode 100644 index 00000000..a8ce0c5d --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_116/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a042 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 116 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 116 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071015 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_116/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_116/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_116/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9f7f4d13a8459a2c16c84e0d67138dd28010d71e GIT binary patch literal 2545 zcmVb!>EBVP|fb`ve+|}tQp%$H!n3{=$kWV&YW}R4CkBq^XfnT`N>NDmww@s@G!&@ z@nakfk&US|Kom?bsrYRVr0w zbgT$|I7x(ZKbqhEOS<&mzy0;=bPfBC$=peQqZE~Lp`;W_6|;E1R<72HC23Q+Us1{# zQ=5`t4&(cfsfcP?`attXnRKw6ZZL3vp*PCiDOTTpk8@Y1glUeP79DAWG zX}fBHwdImh*(%-5Vc!3?Zm_@G(K|g;?X>{MQG)Hj4WcZ)@<=nx-A>!=b-;_uWaI}C zc9IZMeeIypv|4JrZ*_a>o_3I>7opd~1&E%FGPLJvmadkH#Uhh*46|Ktf#j1g9u$gY zr3@V-A6Z6c_i>hfF2l;o z3B{3I-74O%Zpm-(VMP3qOj&}~_6+?g*nvcYQY6o_Go)^wMEIQ&rgr(D)oEyZn%XnK z!3V_KA%lbk)=-VdW~XZ{@(h0DfkA+3Lo+*&@T<99X3a-_kfrClPa9eK;mK+ONAyl} z9`rgFe$4WAyo8IX_!QU0Uh`QO#;#4#p^JPd*9%WfU3&;AoQFjQ)r$OGTqsLr)_}pr zGs9F{4NE;xcdf1lK3ym&n@W`h%ktOhY38#my?Z8ql9$A=tqKQ=xlj_1C0(m`_LMBW z!B?gSpwm12oPxD>XdJhby(Oq!>jx zE-^ehT4EI00)EYP5Z7_Xh~uM*fX4#%xKix$!SPJMM*+uMTz*7Cj+e;cP;l6d1S~>s zTA1+&a=~X88iON6z+C4fR)oRaFFaV{DD;;2wUFYefU$t7fFl7TArv@7xc>nU%MJ-| z2-y=7Vk7R_lyKMRlw(K0m^ysg2^lU*6JiNR0>-@Ii9Ozlu8}Z);Dt*Z4m^%W0uDKj zM`(#>g8od@5$przjnL;#(8&pW#C;W%LVL#L!GvQmwi8h+g3=p~r&#b68a(Jg2-FKJ z99P8YgvKNoEb({o68ecSo5wMtJpRZN;DnnQx;EFJ5J4_tZgb==p~KnKTIF86@*$7b-FB=hly~K1HE^+K} z?1XPd1&7f1q(qz`v4Lhbw47#Rj?E~w{xy|ZUu?YO& z+SB?oID;EjLo>R19Z15Z1r;a&eY?sTK-U1e_{GZ?aQ?Fc&wKgmo3DrTn_R#SQxI$b zL&<%%7@^eK;Fhu5Q&pJlTRDhEa?W*R6GtBLftgV|!q}I~Rb|Uol#+FScn?_>8*N#r zbYHQm_o}5WjLMsivI$uLa@Wv$j9HxEb~!uJ+PhhL^DH|ezU?Ls(5nwxo#$4w)wQ~H z6Zqk_py~xj#C4Gzy2*(6R33R@0sh%#V5~qtJ)|-A3eXiJ*Tq1`KAs0@sAj**^Y*J6 zBT;=hR<~zqBk<0v0F5qOKb83-@% z0Sj~64m=Nz;=3DB{%A%maOv*G;`!@&c+*<%!(AGvg)y|Zx( zP~ne1+>%%pQG9#RapzcTF-T$)zj)7?U(H8{5%J^Ow;F+uZ{4{Jfi8w;Y3qGn+PF~W z!WbjZs_ySA(vU zm8$GfZxJmc4(~f5BYZi_aVQk?R=FZWt*-@1oG*I%`MVxWLu|7%v~dVqg4kw+NQ@l= zr2Gx@YTfaPRid$;=cJu}WLYs&q{mOG7Hq)_RjDi~8C2S3SlJ2ok#A#GdD8y?O6l|b HxfK8a#0>Dx literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_0x4a7a13e3b7048a4a83a1b10792ee22ec.json b/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_0x4a7a13e3b7048a4a83a1b10792ee22ec.json new file mode 100644 index 00000000..e4a0d720 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_0x4a7a13e3b7048a4a83a1b10792ee22ec.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "116" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..000dfb5b06f7606fb4975943cc7798ee7009d50b GIT binary patch literal 591 zcmV-V0-yV_kZ3aK%wEhoxsNl0=S3xPgBF1^RxJ5;jctOvZNQ$!$&|HJnge*WCP z`TghYReQFLy?bBOB$JquR7l=j{ZgSE6(HjXN~E6QsxEO_;1b!QzFDD6x*&%Vra9)$ zmv=y&5BqEo%)q_?=mOA%am6T?fI*T&0n~@(pbZq9R)7kRLAmU+RumJRL)og$$%~ZN zBmh%YHlsG`uY9vr=CzVx;*rJd1oV zfs#JA#?;>`5}(@SVD@-r=}p!4>yKVrqiZ>GK{r_!uoTDzOSLZ%?|wa;reg)#7PyRZI|R>)tKNWtZePatO^r3{gjVTMXfknnZ7 dPdQ#-0!u#^lS%M7iv6bc?f@Ud$i(;v003}7A;$m! literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9a65a54a25614ac9838e24b59f935d112a801c2b GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)@HdiX?j6B40{mV zhuB*xTeg<88;YSokfPX@J+uRcr3OJsw8dB=Rg!X&76G=GVg>j%?P2>z`xW~uJEY`G zQe;i%3PB{2hv)mw;Ya%Lmn(n#bM2CS^kn|-o@`l zA7Ezg_6X084@*DhfU47W(6mvmWhR+=YbqfmYdAJLF=}OZXv5$dDvJ^2y%r z4~1UI6;0%s&TEt@B6>I^XRW~{QXKVY0=(vXIFayPHN8NAgo+CYWvv>bhts)jA13y4QiQK@20?Rnc z)2xj9?rFFt!y=Q2XM~~A0>PrJ#4rh^M8zDExdcfhQsFc!^sNIPKtznnm_*17@Ep+Q zzJy5wLNY{ImMb}lcRk@DPLOpN#v~k!sohAi$`Y;;8lV7&1Hu67@}qtqRwhewSPl62 z4hUi3eMgX#4+%1=8K;kuDWFd)i<~hM5-G7bM!>CPQ$gNV&>3S9AqaGUBCN24kMZ~| zX!R3fL`86ffM9}y@#wnErCCk{$%8={$p*6QGn$&S0po`Z4T+Fu$tU?e6cm;n_QH@b%)%+DUC*$9%>?QMHJPMM z5^*!*NrGfzRxHW|wldOlut!#phP?nHKSGC?LWCcAEu$i{aue{&DF$ojoMNU`!?7QA-r!4_-- z36N;K-wIu;&X#ePbj=o}>exLL#ao?8TXiR%>;YVh_)dffU zwO1#fzd9KcABht@bgk8fCAHDrblx5^t~R<22j&_`2dIq@9f0h<1?im+**+h#Jqu*} ze8|rEkeyi|JLg0C=R^Ac1JdYYHZ>RzA4m*N*2Z(SvFVh`+BJpBrW3GH9fND>U zDm;Xsg4=RCZo9|>y-xd#3xdc|NHSYUz0p_8Lf_ujWYI0^aW9UEUad;*alc-8THWBV zUMTArS?uX6#tv$%_{AOsrB_g&tI^frH)xhDZFA2wOQ$x}{fmTp-uC5kV50 zXRnz{P)rL`!&+c@%tDyY%x&zAUN&Qr=K@O4J-q}4x3I-GG}fm|?XsAL(65~VgA`mX zvsO8QDtD#4=^!ln(zI{GUO|TxE?&kg4^pa>sjlDX1-Or;s2>!Mzxn%5^Zcb35wk%W zuFLj{1?93S?;Rg+W3NLx!FJ2Pk9~ZJI<_9@^!g literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_report/report.rst new file mode 100644 index 00000000..3b7dcf31 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_116/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a042 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 116 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 116 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.013775 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_116/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_116/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_116/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..abed59fc9fa1586fa20294badc82e400b50391bf GIT binary patch literal 2844 zcmV+%3*+=3iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhPaIJT2%CuuSnj?&grDgp#Zkv3H&rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z``8)01%2yp=wIr4e?{+t6m}_DiBlySdw6#D?!9L(E*58jzb*gs-=8fdf6?cT>79Cr zGo1kW15HPm>uVTsIP^T%58~*qbUxBWIJAQJhj`=f@#}a!T2;r$$ENGV^~XzdceheM zakO^Xbr_hI8JuzxU-LYe97n5rp`!=H$q#X~;)hOP+9)0^MK_+nz=%eBSDzShbij{X z8}Y{$8UVXK?`XbX{z0Ob21UGH^`Q^IcsHM!p*kN9v3Tui~(OjPyV?4OI|| zyzV0{Kq`iqp=AOYBlNX|O#SPqc)zgx-)GSZatwuViheKV#C%o|vqC}1Ju2t7%0hwL z5=vXb!(%p-CCBkc|k0cgv|sd<8K-U|GVu*yQ|c?O~8R4BHguIKaSpeD#^-jyQOs7 zz~Z(!bX*@9p$GZCyI-xV&04FccDl7aX+Mr`!l;e1uzE5}mcFUQ(Xx=sYa|mw0nD$Bm9XTS$-uewPsbV?bmkIjs%=;2;!DlB#R~aYj-8(RUB?ZwN zW#b(5joHw4PAKaPcKrkk1lu#WrR{=H#^KH!40rOm?Lxk+Ya~Q4Nt$BW1yCRW2Z?2& zjHbzSvHT?$XnukPf`?}*)_k48$J9onHr7a^_^iO-5rb`N6j*d}FlF$WOL2+zpP3%T zDKaQz2wOgbSx8+o5zinOG&2IX zrP%A+6b~8fQ5+1l6i*rZDQm;{2TU8DLrLKA0zRW$86!`h(tdYLF}t>fRf~+#3B?n{ zaD@h4w972i_6igi*lwC^iiio3wGl7;Z94eG7rQF^nh!qXqL%DoHH6$Ht9FQl&0t2ESF>qQ)WdcnX)pka-0rjEf@si`kO z^(5M6xs=O+KDhg`@(P~8RkbR~okj&j!mYU!$bx*kLlr7V$pgFeK^~^ikpYF0a8`++lv+Sb-tE?E5bbN;^@n_-b$A8&w&{Q}!=Rp#!{>`)Nf$*y zeKdHesRdmtshaReRErObLJ4X4EkoRbEP%MHN?oEX7PMWWj-=LZ9DQR}XI6!t5h62s95XiBQ zW{Z?-O0Prn_M0*!=sqjsb{iELF55B@T<|kf*&j?nZ`oOKt2me1s|_%3cSx2#`TqM< zU|I-cavAyboZMrb!X zFzfC*TZ|h}D)(SP&0a$RCEln#?-AF_O1B4oK7kRn(XLe0mb9lxplX#`i)0j%`A%+r z0_pZziUg}lYU18SVN0YrDcA=W!X6xkj}J$g^*v;`zLv?CHZq4VkN%KJswi=F|56nt zCxa)wy42chSJhs(0W|(J3IY$8c^;$+DVu?7aD&7rL?Z`8j?_E2U3pf8!vi^KEEC6Y zOA+$bic(Q$-Oh!3mYZEyJkor`!*(5b+6j-Q$TlpwelP)Ko1R#`xe+GH^%X@K+oB^*FsT{cjkdp4c7c zLa(lC`e@-2Tp)ncb_(ztf@xRu!R3R4*QEpMU2@0B&!mo8Z?vCO8u92f`ndX}C#QQ6 z!If$i&T&w4pC@kwJS`aQTsjdZxA1baBEkLtaZ+j6b6tzKHPd2_b9W%(?6^KVtgg;( z)%rJZi>h$n{lo?1P46@q!BZ)WR!1%l9E~jFidO`qo1@ie)q`ROXRz&v4busy*&?^a zk#{M%95>MOC2sn#s1^&^`Om}*M%f`;6mnYlbfTs=72$iQ3@G6U4k zBW57v(WQ{W)gi^JLyFf4DPA2ie|5_b&klM0YWT^J3l$i+KedgKFH88(iLp?Sd17yh1OTXl;$n)=Q ut>{Bl4TuRo|CFeL`n*x(@|+lh$hr-(6CN^}qaz}^xc>noWJx!<8~^~qCw&u&q~BF5XKb+W%VIKPc77D ztKx#<&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oM-@yslbqofohH5yQnno)})HTpzOHWWx+B z-vAr06WS_{M+ENEr#E9bsp~}y=lgGCc$f^-mcMgF1!itOuNODBICj+^fov7w_W=L^ DinNtB literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_117/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_117/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3c3a579e8ac61f7358ae4b0ea015bf473fe68c90 GIT binary patch literal 1291 zcmV+m1@!tKiwFpU%z9-4|6guzWMwXJYixQhbZu||rBz#R95oasv}x{XdQpoI53BH! zNM&|6yV*@a2vtHw6(u|rKE6L#s{2hU~(VwqOuh>_ZXcee;nz1yAdjA-Y0=-qlu z4Um*;?^Yu3?j%ZPd{lW`6KaHD>cQ?*>2W61ln9uBKxi*cpMUG!R%y8~*Cy|BX+dW+ zf$OXBNMaSqxIjp&85IWKJ7E?fKw_1~D0bUS<{sz~scL%+bey7vH z$iu8wmRg)&>HE@czy%}-NXZKGPND&gL_>k+APB3=;4abBu(ZsJI_{7E?XE4UE(}ox zNHQx6mST(HCX$0?3iG&Oc@D)1cNHk+sZL+8UqxB%c8Vq5$~Q* z2^FL|Fkz64=g{uw)D}Wn!DABBWDF90-Fh|}VPy(YVm0vNB?6*|`>}>xO@IWh%+tqV z$t2=1 zP)>r$LnB&>v3TR%17lS|l*G(vV@b7cf$W-9gD&O5dcQQGYJysh=nHDuQc#a)TT3~X zYAVSDv0ZC=DM74Vb)p&)Foyew;v_&Ew6iNtUM5tI=YFg3AtsEg? zE+$!wkzbH0XXbgw5 zRn4X-IR4>=o?q9y3oML1*#A;V*gxFFJT}|C`{o8Rur%3TOj@8h8JwLRMHQPH$=h1O z@V+L*yz73l;6ubUNK( zua5`cC&X$byO|N35G3#*>P1JsjNKj|Nu`0nMFK^|qjzq**14)h8UNZJu#7Qw&IGuf zMs?;kxAQE;KGZe#WtA-I)@n)^f9h_B)krp0o?>`zi;R?=Y3Q#wtnpUE(=e=$u7W1;1`*$osF9qw`E(_G2~x606w-nq?SGpf{h{Z8EmijJ-X2nTyh za#ITm#(wvjAB=vxPF-^dhMu|a{#PhLkxfITs@s~Vl4X`%dE>U~UP7oInV>6=@FI~Z z$JQ1=lyT0j4f^%YtzpN@$td<;eew4n;rY|86Irf6m5N9x$a6AjNZM-3`;c%4G@{{%c#t(LWJYjk$9P005Sc BcclOT literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_117/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_117/afni_proc/_report/report.rst new file mode 100644 index 00000000..219508a6 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_117/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a057 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 117 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 117 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.071836 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_117/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_117/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_117/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..393b989cbfa29c8abb9fba53eba70dc2f671c03f GIT binary patch literal 2547 zcmVb!>EBVP=$P=?-m+&-mLAHJ zz{Bzj7mvWZq3ok5q*f4O-wH{HUE*UZH%30O!YHtqSMXRCdbu zb~2_mB@v8dZeBJXs=A(~SLGq`Wk}@&QfR1#p>;b}yU}U1)P9zJ?FKe-<-{lR`h7X} zLRr%G)dFkFC8bg;-OXX%|Eg}Vzu(oneN*kX0mo5-?Z6G9EPeZ-W|;fkj@j>m7uU$x z46x-UMd!gOwu*XPNNNy55ss^ zD3+Bnbd)3#5sIV{Om(w0P!01yGag#qf!Q0FS$g?7epd9d^tu7U#=v}N8QuLyS^Aj_ zD=Q}yM{>1R+^N>&m-sj${#d3gK^q5#{sinmqCqK=7ugw6H%}t`&InVxcGT`RwF6D< z8{pu5;_Z=P!UAim#v`-avzB=VKk~pJK((ovT}b%#+%B``BR|N}w|Y;SS^DnTY63^} zZfgF&uYjh8k zEPao!OdmkEukxkYY&F}K-srTTR$$i*3~68<6z;*oKkTx=FXUu%V5t2INm+lDiL1I{ z<#lOfNB_C9wieO7V%;Ho#nNuMQg{6vRO{YkuUM>yWUo@(Etl&w$mQF0=M)T`Mb~bz zRJR2jL^&=o>@CdJb}OYiP4<>xyjL#nR?2l7u_@wN-c;%VfC>XN&NVA_JkN(K^)ICu zML8}pJU&@r6xjlP!F3SVaVLo5lZt>R0`|C4?DE0!T)-y*$2BfLAtA>r_!3> zAvZ0|cmlcLvkQ&ki6UUGa~3PYVD1+lu5c83EBr!8@l3#2z*NAIfRPXi93tHRfQMy= zgg1oj2??raUw7csXvc305haBlON<}+u7 zj|Ige*)2%#)6gz5Gl9PF8T_3UaT4I3|vW32(d#u5$AnYXw5`_Mz4{2Myg)JBL~N={bc611ois1u+I)Q?(9(_2k@Uy;dv& zKe+Lv@f6PBrq$Gpp56eGaCJ!q3P9hka|X~efG&Ri{2848?7;J$fBV(%M)a#(zz$Oo zYym^beYO~()H>jnvENr!nC)vhh{kfxbz~Dq9`S*hQ9Huem&;Y9W-Cg`+8NzLR>ej& z3zc>ht9q|ms$o>#c9d<%0+73=)@RJ(47bbKk=EJI(oZh3BjVd`;sCvRr``R=YPEY- zuVDf|+!a*4;Dop?l0!Ec6Q9asFD$@6y9`Ve=%>dt#$ExsV&u9Q=-3B~APvOK->(R!iz#Jy5s6N= zex2WN4Bgz<8N2=T)$BI5T}E%$8PPgJvOYS$C~E%@E&`C#dPyqXgLU2zqJSpcKJ-K2 z{g)u3cX~1KrdIz%`kD73KU^k6*W*D{-_nAdS&`w(Zel?Uzl@J+eY@}%o3b) zfUeprKwmK#dW{U04=!F8E~q!yjxio-J*%a6A2jrAa-4qLd@wLp-y((^%_iLApyoc$ zUj#xFPxda{2=gtx-fn2H|3A(vjfO$s${r%FaGkpjGcK;{i_7ZfVym{kfh}smzWYB5 zCX?_up1`S;q??m~#y(bAhx;n`)y+ZsjiD~}a^Ui4bd}YxXz7hX& z@MsGb=C&Pp9vsDYx1#*fj9TE*-L2*G)7>ox#fXXS)UR#9AMw~{fOWISC^$cI=~8=d z>lUEG?|--@u`Hta_Oj#7sn&9k#3p|BhBJS=7#&8$k8j^<20p%Z=NbgM9G<1^H+gB} zLYWI=j6AD)c&JDt64BVjQw)dw+k!t?YP^Yc=BvCM2H)$5OtHhQTkQ2t=2O5Ia$^}L ztahnXV~={vXc=*M(+L^j%UO;?p_pssiVU^B5hQWG=;>##doT^L&Cbx~F>DE9n-L;0 zb_|g6H_Yn|$0t^a#(JKUPWrxO#Y~Z&KBZc)1us{nvZQ2CY1d$7r`SinjalVM{{!MS JunxHu002J^_R0VN literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_117/create_stimuli/_0xbb6302e2f4b1767c0bfe70340f1011d9.json b/Afni_proc_through_nipype/_subject_id_117/create_stimuli/_0xbb6302e2f4b1767c0bfe70340f1011d9.json new file mode 100644 index 00000000..69bcf607 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_117/create_stimuli/_0xbb6302e2f4b1767c0bfe70340f1011d9.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "117" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_117/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_117/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4bcb93a1c918ec68a16a3f1b29c8ac11fa32979c GIT binary patch literal 591 zcmV-V0DQ!7FJtpCqc$+}dnEZng*UemGT!q|F+&QlrELPeZ!ZC~<(Q)kvV!dLmHBWbJBEa@itN`DpJ#7DIzhZx7hm>q5 zDYB+>g&-2i!}ERT@FRWr%cVd5xqiVu`g2C}!<@J|%}GibaS0ok7vm9;rM|QS@ACJu z^=o-lHuXGWI3uOL77BtDK~mAINNK5;Q9_BpB1{fT{psVFQIrcFB9#bU3=&kKl=>o~ zQK@g8obF=p!Dgu!11t%Os3`TETk6XpXE7aE+=Y}6fL7JGw$H^dPWe7c$%v#t^6Ad@ zkELEI6iwx+&g+yZB4Qkp)7Ib;DUM>A0W2YBw{i@|3HT1}MPckTAfy_;@gYmC4frRs%l1 z2SONl-xVa|BZ7=-Ch4Q(7|>_6MZp*eiIi9zBH&iBsUhzu=uEJP5Cl3z5ms2j$7K9A zv<4|Lq9Qm#KrqF@WOUW$(kv%};cDjfjwD$*1|<7ZjEq_QHrT%)(<*yOCo7n+enjYBEWi zCgN7k(-g_ntXNbCY-Ob9Iv|*XQ5-rh@pC??UKUwqRtV?0UH7ra`AQ>4Abz{AMi@5Kg5U8TZooE> z0Es61t<;VBY?*XP*KAR$4&8lWT$_*=w+j~904Jx+!LCoHAp>^F3=5#R!z-JC9(NYXuw1Q4>a+V-o951Bl&! zebhFQw5x9fq95M>;mLC|`@ZKRIJKCPu9BmMTM2s_PW{np!6(TdHD0Jj>lAqXwY%Hk zOcK=q&;h2*yi+b^qu+O*ADhydk#A=fzMTo*&UyKEXXM+Rg>QGlw|ic`y&3uTX5rhL z@a_FK-|-wXQW4$)j@#zEYEl-FgGU0h0cm>cJ%9>%T4YR4`Zjv4)^QIm{K)KjeQ>nf zczyK6>!S(ru{gm)-&(C%QfvKn=iMRWYOUXLV6K65fZ7<*0m%M4kp9__owFf3vp{yv zhU}gV*_{Qldp2b6Y{=gKfHeA;O%2AwM^b}vbzagRNev$iIlCG@7;<(sychC>0-=I_ z&oO4p(=V;DzjgY^GAEVwH-5~qwe~`-tvi*nwoRe3?j&$t5>d5Is_DE0tntSrkV9Ri znvE^a2pqCd2Gt&+O7?woof*?9^*84z>)Xb>4aFK%);MiP()0YyZm$g`C_+j=wI|0F z9zsyTZMa>xQx<_MK>DZ*Oa|?3c|XP7#g`0DT*G%J?2xnr7@Qyc2;c|twwe%MBJ4&j!FAc^hM z*UTj-riH0tEwDUfAg6kMsY zRy%\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_117/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_117/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..a658c2c0af9b8305532d45e660d9331e0cecd37d GIT binary patch literal 2847 zcmV+)3*hu0iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgq=3kv3H&rbUXzn13cfTaKi`fWVT3guh?`l2YPM zdzl&B6}@Vop|8-(K1N@qXF&?Pl&r+55{*6lcK7T#-yR$+z6JiW{P%x-x|IAypE;&? z>LJc_0^|=g9bvAoVZ`Ck^ISiOqr1}iNEhMI3gW-T8-I;o#p}_kIz~P=T_>(TTAI7N zmHLUJwac!;mK=^@K>5aufb$5cJv)zx6+yWw!8&Y18j4*SPQ4^-1o z^Z635`$!9riXmobnLx$}eJvqV|LS|^AOF7dA2V7(j-e1v(Qk#EP{`(mY+h7y56gwE za$e+0;=`OM#>8xF`Y@Aly&*rTH5zeri|?Bb5BVHH9_5-WOYN50th6fiS~rfqvRqxW z_|P$@lCzuRuKyGpIw1RVGw(p}5-FZh?E$4H&9O-Gx zN~_X@o?m-GKbtEE1sKS4rf*`68$hUg^SKdAPiMh>_11OSy-|5`ThDebX88m?UUrPj0*bKaglJ^7&bI2G~lH2)`4P znBCrQwyV;fRO`w>@R4cnnEj9}tXh+wD(#Ls&ol5y76uEfRVAej3BQy0CEgs(apUOi z&Wmasy|-9WK%~*G&lbH(J3l0OJHLeUP&C9nc2s%Ufw?Oa?bOm7sM#COl!o*eQaD?d z*)NLxH$k?*6-Wan%P(c6)~u?v{o1bDk$}^Uys#w{$zn0QXjQ ze;!K?ZwNW#b(5joHw4E??Fe?D`4L6Kv1imbS%w8HYP_Fx)BRw#7nO*GPz9k~D>~3qT|Q z2Z^OvM$=@vQ2v4oG(W+4f`?}*)_k48$J9onHr7a^_)KK*h`}~B3M@J~m@@dxrMN`< z&rFZv6d4pUge{-JETpcPh-Z)s8l7qM&jbcjn?)=zlPNFMPqFXWDL!UWJYg_mFlMmN zV2xP{JV_{jmo7{9Oxj?w$0S78D7A@6so@F527?hcXxOnin3pE3#Tzmh(T2^A*b75L zW`5uHQtb6@iiZsLC=P~Nil>bIl(k{}1Evknp(OBl0iRK>jFG2LX}>$Bm|fe#ss+aA zgyIQexI%+2+GQ4Mdm_am8;)s=-F}L{2~y~UOf;Kf4b%1eHUr1h&A`&B{n%vsSxkKn ztrQv*PIVe-Ix$jw$}rQJ)gpVqWMRx;nsiOm=i4OUFogq)>9<9VV$)!;NgF4Okyl_a zb>t3*DfX%PL>n_EwBPkYoHnpGP4N_agY(9pVdvd`m@9wr`8fbtd6Ht+GAQ=VVcPIC zKS&!sI!-a3cqtBSiVg2%m^DlsEcUPgLVd7kK{^~XS!lBpVAEoUp}D{j+E^Q-d3!Dm zc6;4!t)(#1px#Ozr8m1OJpDnd+`AxML6E%jTKJU5 zn))16Poiy>OSv5AgS#&(FX0(nRjZQRX;eTY+?q>)EXcPzQ~`8kkc*!k9>DXTJn-zp zqc8t7z+WaEQQkN);1#Oq8BdN6;M;~8SN2a4& zp#k#h-Ddl1wchNgor(hbaGNo;-80j&G~Tnqq3K|LXnR@sPfi3Q0mktu4v?LNp+K`N z1aj=d*&^kd((BN?{i+NJdY_eXyN!wrmu;B{F8Gc9{sR1(Efeix;KVeGUf!$Z0vx z0aKH3 zMrb!XFzfC*TZ|h}D)(SP&0a$RCEln#>k-$>O1B4oK86vs(XLe0mb9lxplX#`i)0j% z`BrXz0_pZziUg}lYU18SVN0YrDcJiL!X6xkj}Awf^*v;`zLqJJHZq4Vj((R(swi>w z{-r8PP6m&Ab*Z)2uByFm18DqV6a*eF^E^luQZ@tE;0B3Lh(->G9I1D3yYjROhX-=f zSSF6)mLlY<6{Vuix}6L6EH}HZc%=D=hwVD>v=bgp$x#~5ddvJ+OBh}?Osiw&W!5vp za3X;0)@!@HYULSJfF2qe_YJU1ZjAkZzO}UU1Dgmbwep4Pn=_r&;V(A$%W-;b`d>3b zJ+V8?g?G)hG1k*pxpX2-ZsFx-MS}bPqomTX=eibeYo^5<=k7qn*>Qb# zSY4gns`ano7FFTC`;iOAo8DazODnnsPX<5up;tVGVv!uiSI%E|wZeXM({#Kr zz{%^LcL(!#SSk+uc>ip5X~{r?%;MW6bzoX(ef|P!Gh=9hrUJ!{^6d=#eLlC&ZS#`TU98)KkCndCD&Fbg!5 zW~e$Iufyp2If>288W78V`-&$k;b&M4G<=e6))g{4o6D-0Uob$w&e~zHws9f&93332xei9b8U!6`rbB)$7vr^~BTiwa2-oB*T!*ia@)h2cZ{eDJ z3)kUWNck4tl&^SAzT$QGiYZ_5hxwk*AtN)wRp7Yi!-lhNItH5V_?k0B>$y!4LV+d= zZ3m})MR8+;^*|mE2e~6~bg=gAt1rHNl@dQMPVjJ)Slv%Z-9OsQTpl8>?jLPrU@i%n z0cz(FGZ6CVQpo((A%&|$3fBoKTphA-b;!bXLKdzLDPA2?{69jH`nX;-5D!07H4s;C zO8RH2hMyer`ql80Lteicel+Al1qSYqZDZui68>XioUdNovdB)A_&fh2+t&TV;QnT2 zR#|(Rh0$ha1p6iOXRXC*dQ$?4@y|)X^GzpMU#q$ff=w25%G@K!oqWDTzG}_skdyNp zd_E)QJbB}h9Pu&q~BF5XKb+W%VIKPc77D ztD>TK^Xf_1i%7^eQ_YfpB8b`DNMGQ9}xB|B);!*TKCAnEFE~}PX=LM`m#BjEkCx(|P*N3b)*)Rjk z*TBZ>gtm&~5rO;k>CG69>iRB*)7`f*JWK{^%ip=80y8(C*SA;KICj+^ksQTv_W=L^ DexsU~ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_118/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_118/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..197ba03c0d747f70cf51c8643813dd5a4f2068f3 GIT binary patch literal 1293 zcmV+o1@ihIiwFpR%z9-4|6guzWMwXJYixQhbZu||rB&T;95oOpv>{(jntrIQ5D%yD zl1OE5FS*<$AcQKRqKXn8iuwSmEbs2@**UMh*xtLOs1m$XRPr0<0sa`?`L7u7?tKsm zDH40q?b>6{{AT7iGe6(_oo&2VKkg&R%gYj?l9wR3gb3s)yrjy&cz5#*-~Km$@QZ)r z_uVRyv;glmXf8P^wMxC)B#eWmI%SvMJ$f<|5X-cxMvOEDyt_eo=H1TxW<=v&&%5=6 z8Xy_h-mOI5eUK`d^HFVWO{fuqX%;(ErN_BYQzBpj0--%Sd-|<+Tb1R)T-m(Mr3IbS z6t12|mBcENbAganb1DqJx5F+%fYd6DUhH(4DxiBVAXnNZ2r?Wn{576k?+uPl`f(hi z=V4bXOD*oN^nK+v-~v(vq-2eGJJobNUVyQ*D80LXt`hV}a>F1aL7*zMwsMS@#sDSZvaGCG_`54q zN(HGErVP^Y9NOK2+EOShctR4IjzOZW8&5_f%uFdN%m#iuM?e&DKh#jD36Q{*dH6Ui z8Tzn2QAr6Y7(?|XL2M10*5m_=n~ds=prd1wQA-Ve%;ooSH4+f`1T-TEP|##9-K}F8 z(n&CQC`3s)7O%a#XRIoTk{B6nEUC{ekX?~#(3Mse~X#gp6gCrZtV+${`Zw zVv;B5`30F$jvl_>ivx>7<`%{qEtT6Wl;j~1ZQ-mTghW8L1kWICLclcqSb3$hR~wGJLGssiHKABgYrVtxbbw`G&?K4Hn|FI{N11P#D3mC-m(f%Q z)xqWUr@V>LF6hn7Am@#iR0ez zsE>;85@I!y-OLD12oiV@9Yu$}O583VNu`0nMG9rjqj&CB)930DW&A6@&vM4tITPTv z+paU0x$P$z&Y_;M&+A}Ox7JX?_%nAioJO*->I~g;TV$l{tcU)J%LZ?~JPXT4b?x-a z>p1;iGqOwCXyT+K7|!m}l-@v00H>7CmQGNUSu<#*;bu<7W!0pVhI zsogXU1%1DL#SVIZs|j7J1YOVFcmKI>zcWw5WQfFOJ;bmfg$CNm;!}wGy+KML zK8cU}$HUX(c#y|Or;r@?`a|q-^?96Zj{oOu{MG}8R03qEcQ)NH%&S~xaN)mxR3*_rm#IfDa|r+d D*tC0I literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_118/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_118/afni_proc/_report/report.rst new file mode 100644 index 00000000..c02671c6 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_118/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a011 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 118 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 118 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.073461 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_118/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_118/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_118/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..31a417f9d47aaec33d6f61a358f5a5f6207e5f90 GIT binary patch literal 2544 zcmVb!>EBVP+LpMTo{2{4oK_a_kId2`tIA@fR#WQfksk@7fvM z1-YN9Zf`ReBbrxGTv{eG|=S`0d%VXU{o%7W?h~xc>KlezcbVrJwsGJPENx z{1`_gWMe7~5ycWs!Z3*9EWN3n_4F}K+&KFwyZe{yhwM(eX-#oNN#JL#`)f;c*H(72 z^!8=bNlaW4pGdO^g&_>i(#^xfw_|4Hr!3uw5pxF!{q@F==?3;4lev@rMky-gLP;rPNSvvv-E2>u#qb#KAG3=%dr>A zl6IgLSX(YBm0Iau4)gw3b%XtbuHNmNYQGIQjuLDKZV+YZI}bI(Jm_}JeiyvBPR4!^ zVJ8V8)i;luEvv0|23D`H9%{!~dKG#-T!84=C`0>3&C>N!u~=l1u3>f>ZIFBv#=}Cf ztdyanB$0?vB#mIITdjd=n1`D2(CQA%-oVV#E6?$>qL-yN3=lR3=0nTq9z4p@&tzCx zIiWa`tF_{8wI;vBClT?-GGz(cI5hMpU_L@(7Fm_{xPF&e>TH;UX+DtXAaj;zC&}vjz+{ zo*JgwZd&TGdSLZ5@aalP*;cA7SeCzTUo)R(>Ag$&le{E`ZB;m4&V`bABI#PAd#GgT z`+Q~k0J?pZFU@AF*|zjXrv4ufp zrI8)~_v+eOME8qzhwK+id*w>q^>a|Idz1ZQu^y8BN^!4TuG1iwZ`YkOFmx7Od&N@S z7H|;dxWurxFk9QJl(p9UP)xcroa9IueWq2RC^30Q>O zv@qi-DE0Y?HxLMU*EaQ_1ymK_q_ z5V9vE#75k;8R4$c8OM%*F?IN~Q!-kXCd3ks1&n#a6MMXKU1MSV&StGx>tB9x27pn%T;afVIF878)d*1(uNo14vBGo~u5j#e z?1V4J1&7f1yhNNJu}9}Mn83%gb8T?|e6+-FXrA*C+7wOkvc04R2ZMfJ?U({JXm#?V z^lION(;v9XtqZIb2+2D~THhQrbW80VW$C9E6e0|))JYb^7<5h5Is(>{bDQ;Au?YO& z=99)#ID?y3Q!{#c14zQPB^4+DeY?RKK+gcW`1$i^aQ?Fc&wKvuSAQJQuW|u9OhK>( z3?=v3VuVubfLq2vUsYkYujL>b%Q@GPO&oc|2WCd?2xDI^SCyKrC?#umw1cdQjcOJu z?J8Dvr&_9ERNi)!ZO8(UyQbD>%;Frk%h{3EImpsaF0&)z+iv0jy?VFZ{l;pwdseSu z0zcdnRK4JoxGs`IHyIP3%407qz(2bTOcdy+Cp5-h0lH%3x)|u#hl?N$)g1JA-hNew z1idfPxC6amz_P6~!UaDImi^uw_?A~twyR63y{UtGx5u*d$@kx{2&RiEWp@#YPPTrR z-*61wJkS}t{q)uBHnv?xZ`T>oI!Cg8eQ{CL{t;XRAgA?`RN8@c-VmaICfq*sBjEjS zK}7HI63{vtkn_z&1yq0pzWdm;w6+CwdZ07Tzu?gy2sH_Jgl@YBqi)_2i}5a$$}I?} zJ>n;n`|Npg|M_I=&LMV!2yK;XcekED`S!P4c@^cR-oI2u`OVh+fKg&Ti3kA+5_(lzaHPZeAS=D+|d2!;Jv4+fok(&BkM>06TGz z^c{GYZ;a!AytTIWGanIFYV`}%xAb&Thrd|oFXz)M)BlPdZb|&YT#(u}vM1-3;DQ5m z)m{PmipkJxWUzd2@w#+Dy~%cr@kr}gExr4op=Xnm^yB7(fwB4)G2Cc2;T{Jy_j&#z z5Tbapf9Xb;Z{hWJLxcVQab9UO3<6j75OIa;+zpsoCGxX5ewrrPXv>zlg)H9gklF{@Yzvx;wSS$Roa%=TS~DgjqGwwn(tJt zYNfFJnUQ!>7{jXAid2S!ZX=BFG=Kd0;td{uAkPtYNW@-w=GouUs}ZIiJ4D|OMx(ql zP9on9;B4un*WhG`;-7osQHtdnd`C9UUb;HTFuh9rFo|jY-1F{e`Fv&37`_qzcJOEm z7Uqr}cpeP)EwL=3_|CH9?wQtdki;f__J%WmyBHlt#E^$Q90uR(h)l7=ty}E%PUcg<7jk16CaiX; zw8I|tmeDfe@TLmdC!O>I%ZiyIJ$p*EU<+QUN@YpOpwh0x%1*J5d>gaMll}*%T_g&* G6#xJ^Speby literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_0x23d3092dcbeb29c96a57146dbeb92b8a.json b/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_0x23d3092dcbeb29c96a57146dbeb92b8a.json new file mode 100644 index 00000000..df8fba29 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_0x23d3092dcbeb29c96a57146dbeb92b8a.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "118" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..df72b5c54f55dd6ac453598a8f41047147ca6f7e GIT binary patch literal 591 zcmV-V0E$0Dzf1A%ON(7RYf-WE?`n#k;SV`ht+$jkSeM1x9@ZcLB>l+#R zMkc<|!8bbAH#YQ*O?=~nZ~SlHzD7rO!ZYP~&S8aYOmg&d${|@Gd*a3lmC>@Uh&Vj^ z7(3404qi#K`6N+|=GJEWezQG@_rs|=Bwg01lNu#1cpTELMu`JdtwsW+))Rq3CXbN8 zFftrQh9<~x7#R&CBNJpajEsko@qZxoe3(sx?r@@M(5;S@KG8Hh8)-fb&qkV0!;{E+ z6Da9ZYfSyEBJrV14rUKmmflodzy9d8HM)``7wjhM9F_vPV5#;c;=5n>r|DRMF8P!K zjAJ5gYeorDOSWxZ?>n~5%OLpNHfOy~+kEwxv_k%>L<%mieF8ZXDP@SH3^P<>f`qTr deai6y6IlAWm`s9CQS7(1cMBEl_mubu002jh7(D<0 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..76346352df58f22c25786bcabf2ab4829b617316 GIT binary patch literal 1536 zcmV+b2LJgViwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b6gLzmg)}z^;UcK2K8%)! z?6zU=1kwssND&CNO&{Q)YFJsGnX^02&e((P*(9Jy?F%ZB-#UG0|51NM|4NTNv%5)9 zO6W3*GGqJreBU|#>^=VF(jWg^z2F}61!w7D3iXtw5Hk*S-~;>OA_SG2OFQ_^f6r^b z=0|ze%o9!%$jxdXfodR1vm}dIZk9>JKvEe*hq?LeQJ*uCN)ZqpNs$dAQlRAKB4J@} zZk(K6r_EL?H;X=1Ktd*SGgr^er-9&oHgLELu^1q&qOrO!KcBp6eFGP>q+X_u2=@^BDG(qa4x<)*YqiQt$SsWfqRQ)Z_|CCH3VN3Unfu3Ahr zL-r}v(XpUzkEdpQ$i+Sz8)pG2_%VdX z=qZ$qO_+q28SnrVKZiSURb@$HSBR#mTlcZY`9dQ{D1NuEMie*HLaW`}+Qe<35Ry#x zTW%`l*)r);b-P8GKCJIc>)M9A_&DQ%3vhDEd|IkB`q^9?k3O|s&r%4cW|#Zr7@i|C z|LN7@g$p6{y_08)+uv1{`Fp6z4bN)I=DPOvvWL%|(%Nfnd*uYrPVkChme}3urId$M zdH9!xo*U>(k$6JYtscf!dxCLmBho!*6ZQ!zspUPyS#>AaK#i(6S{;+v@G3~`?(3t5 zjigb06BPaM?hj9%+u3)UErO>O*Q&17s8TP4Jq@S)sMYWj(ub87x>7p@UViQFRs>g| zD+oHEjN5lCl&bW4_2dUqK!tvgcdy$$c(A?s?rSMzYLh4hfx7|}z>-aC-3vmx7OL$+suY@ZF; zIUBMw3uNbP$nM#Y-Twh;^)Z_otcQ=J2J7m)q(71xJ{WR#HGDAS>}q%~3%$PK70P;S3zZEo!t)Yj(K@N7^Ad2zACo|eb(OAG zwgm?~WU&k?Jz|yIYCXWhW=tnH-<+eYZ&>pN7He2p)3_0;X0vs_(`{f0N{E(N?Wu8v zM+jDMoApk;ooBvTV*@TE5I6`Rb%oShbGaz=-EB?fy}TOrqX^8EvgDrhn}uiP4UU?H zqK;Adj=5y*u*QmB?qE=6g$#rqUmbqKX2H@mcWkq8>O$Q;PpD_z4;!S+A>I-RCb4n) znz@916GGT!1>(X#@?D`JElY?vGm+AOIUDASA1h*?O3T@6w?^`)l*=Yg3CqL zN+($5t`s*NLghf&_AT5iWS`;1%bI0=!nC&4^;@%m_pyWw{QSwcfB$Kpzsw@xE=bFD z*_!PX|dcfZx$46(V@_8(BJz@0tb;mS1IC5$5WCXd1h m@P9uVyvYG$-~b_-jjvJ|*Synh{@v}&um1~~ymD*m4*&p#lK-&) literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_report/report.rst new file mode 100644 index 00000000..dd42c6b1 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_118/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a011 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 118 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 118 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012219 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_118/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_118/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_118/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2ce7ad4ea8069911fe81da5e28d40c19623fa999 GIT binary patch literal 2842 zcmV+#3+415iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D8rhN^J9d(3CuuSsj?&grDgp#ZQ8HB}rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`0OY*E+xxxszhTC&+gv6_w2>R;w;mK=^@K>5a!E$$5cJv)zx6=yWwD{PMPp34tvK)4^-1o1!0TV zeWV3Q#Sk;JOdw-~zLt=wee>hZy^{xrccLZa7z*JO{ZY(``K%yjg@TfMRLXCZgaVf< zZWP2vF)_uT))SbFziAl!@3!i#j#BM300(}Ebk}nIIQrnJBrChErqXEv zi`(YFaeZWj9_0Jpex;^1s?Dz2?o{`r{W!V_qc+OI>d7ow`nDQJi$X4!BRwryX_gz% z^LsDoWpjBk4+8>c`X<)6K7_ho>sDoDPm-Uit*+AUDsgn<5FO;~IJzrCXSu69Rpr+1 zvpD*Khs(={82Nm0Gxw;t$)BK8-*g5%CJ9>Flj|?R4|z`d2-pT*L` zV93>_a%)eFqmSs7=>TYTs`Sz<*D4LQUT)T)R^Zm@%3N33%WlDif7&7ozm${Zu3YV0 zO3LD!T->V5YEqYSy#L>u3kyEp$(0OqCns#@3nj}*K(S;GcXGLsXYLeo+xdJ6yGj2> z$v6i+V>+~*6G}RRT|dDB!S>Yc=5|3S;c#aL20QuOb|GKVH4-8iCrz>B0w@rGgT%5> zLX%{=So(?!G(W)t!Gp6DYrf9lV``&O8*8Xhd{$uakij-J3M@J~m@xRvrFfI}pP3%T zDKaQz2wOgbSx8+o5zinOG&171 zrP%A)6b~5eQ5+1k6i*oY32Vdn2TU8DLrLJ#96qC586!`h(0+GBF}t?8Rf~+#3B_Z? zaD@h4w972i_6igi*lwC^iiio3wGl7nzd)rV7J@p zRGSJT4QkEgQF^nZ!qXqL%KZz{6$Hr#FQksrE!Wj*^F7V$pgSb$A8&w&{Q}!=Rp#!{>|QrY?$t z`l!F9sRdozR5js|s1~=1!Y0!48-}<6SpacYkvc?K%xSws9ZAjIIQs0eIx-#I3Js7~ zcN(p4)mo#iw#y3W!)?aYcF#=9(s<7b2d0Dhf$e4CKRFQ$MHt7YI6!t5h62s95XiAl zri+xTO1Dk(_PY`!=p$Cf?bgdOT((6bxZr21vOk=F-m2959{;7`sn5juPBeWWA zn00TJEygt{mHV)uMz^kj60cXEcZusorPBpJpTUS)ZK-y&U(4h-*D{AMkN%WNswi>w(WNR% zP6ki9HL1DRs;J#g9ccVz7z7?J@jOTsQZ{|p;QEPAh(->G9I1D3yY#FAhX-=fSR{_& zmLlXUWu>f6yPXU7EH}Nbc&Pb^hwVD>v=bgp$Wa@HZR$?Kr(L{cjkdp4c7c zLa(lC`f%+$e3`n2+-E2n!A z!R1N?&T&w450W_M@EGuU>-y6J?IY?0gG z$h(wWj_d3BO>VMPREve|>}PBS!|VXAiY{__c+f3*J{l!&fWCZ(H$aeQ9~q`kUiD1k zAETQ-!Zvw`zVG(?$zTxrj_$&CfI_sW|ZC{j=qT1q1an^KX~bzGW}>=NXw~pzphO#>E_|hI6Z9*K~-D>m4UHMqh<85i&b43pABxs5&04 z!szNbiS^715X*l5nkOsar&tX%e3EU{6f!%T6I3)pPJp=pk5)KxDYbwuX9m{R03vT^ z+sE| zeDm+hw{T6qh3oJwqqt z7S`5S59IN1kUIiL2P@yd{_6YJDe?2-1P@1v)x(6;!=v@gX7-XL*}m&GJkc*!qp)Q|3^qtAJ?k};^9}S2IA^nN&iaK z@QXuUzZ!mV$m>_b&xV|i*knPc%shhJ5ri%BRcl6voSfg`^BFPc z$s3R4m~UWEbDQ}B4`Of04TD7WL|+0a8eIYd@YK@*y~;%jDr3>kXqm%Jr;_Pwnc seXObhF~R4b5>-&2H;P=I6Jrorw?THoLq>CSL_`<&KZQmq+_@Y80R700wg3PC literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_119/create_stimuli/_0x486e06042423a9b68aa41826c53f617b.json b/Afni_proc_through_nipype/_subject_id_119/create_stimuli/_0x486e06042423a9b68aa41826c53f617b.json new file mode 100644 index 00000000..ee08ce36 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_119/create_stimuli/_0x486e06042423a9b68aa41826c53f617b.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "119" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_119/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_119/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6dd36354b569e7b7a9656e8bf673b2ca74135b2e GIT binary patch literal 591 zcmV-V0E$0Dzf1A%ON(7RYf-WE?`n#k;SV`ht+$jkSeM1x9@ZcLB>l+#R zMkc<|!8bbAH#YQ*O?=~nZ~SlHzD7rO!ZYP~&S8aYOmg&d${|@Gd*a3lmC>@Uh&Vj^ z7(3404qi#K`6N+|=GJEWezQG@_rs|=Bwg01lNu#1cpTELMu`JdtwsW+))Rq3CXbN8 zFftrQh9<~x7#R&CBNJpajEsko@qZxoe3(sx?r@@M(5;S@KG8Hh8)-fb&qkV0!;{E+ z6Da9ZYfSyEBJrV14rUKmmflodzy9d8HM)``7wjhM9F_vPV5#;c;=5n>r|DRMF8P!K zjAJ5gYeorDOSWxZ?>n~5%OLpNHfOy~+kEwxv_k%>L<%mieF8ZXDP@SH3^P<>f`qTr deai6y6IlAWm`s9CQS7(1cMA`*7*+TP004g87XAPL literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_119/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_119/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..b0e84f98945fec219bf31d2d7b265891d481b3fa GIT binary patch literal 1540 zcmV+f2K)IRiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&X?j6B40{mV zhuB*x-&8ldV3MqI-B=EZnGWUepm!8`vw zulbypoA|k{-nYIR(NO2U>7>csT1G5L3Vwiu5}ASX1(s2e zC20}&-Lr6YhD9n7PYFY#1%gFci(nE;h>AEQa|Mz}q{2y>>strB2N5wUBN8Apz%xKw zxDS&CgrtbFG*faC??%jh93$({kBC1QQ@fF1mBw7fw1;}w9}osu7a#Zgurg_!!D_(A zcR&aO?>mAdd`OT{%{YCOoC5l+w8$7EK9LfOV+7m^HYMb31)UKV0fImWD8LF!_!y7h zf>u8!MpOg`2nfcwHy+)vxirg(AbBtdBk3T11#**$r-(DijF1Xhy9u+YQ9(q;CZjhp zX;v-9iURu-tLRivcSch)Hemdap&=2{EcqnAhl0Yg!(JE?hM9j#YS&XNU^9U_K}{xU zlSJH1c^o4dn-vQ(fvt@6LJI_QGz@zX`4KwA6e9ej*)S?HD>nfzykvSc;f$JvC^ya$ zQ0T=ZI7Lr_Y)rxgd6^OBgW?xpC$7sZNz4l2G_~tK^0-)NKedHH&C^7ZE7 z>y7z(|IK$a$BYz&cYx!rIj^de1?1?Fz^qTIjV%wLd>&^BljFXQSF4@&;KGm0exnPH z_A9SXzIc5yCO#4;c<5TIO-pLCyXCw)WL#}_YYxmckPc8AAvyrreFw5R8?rSUvNaE6 zYc^ziHe`Dq$o6bVZ#Ja&KOl`h=2L_5@R8JDT%DKnM^eKFL(Z>;4~Cpy4ey0Kqd=&j z-*b%F^7Kn<+}xQyvdl?k{f!=TY;C?!n_EtytX)&6Y&j8}mqZk;vuZjo0c-p*38YY0 zscL11GXjS!ltHCOsFIt_hfvsz=;ZqAbCmUUV_t`14JvCK*8|yTG#|9RI+UOYDFM}< z994J-K?T=w+iok*dU}KQ85abRBcG(Ukb0}H6otOMt;xKbSEDeBh`w5u+~a<|^sKzW zVZBt;F*4uNmy8|MSkcQp2uiP^K3Aiw!>`aRSlZ^EX%;UuEfGNy z>(kfF6)2{KsbMX!JZ3)3XXZBcR{sK$W{z+;k8YeQDaaVXvS=3KuV9mh}>Ls|3C8*!apM3N8pXT{XFC%7y zG+bBh6${E`Q{Fq?c84@N4X@?3+W29wvyHLW+-`OJ`|YsPd;oWvb!!iIxH8RV38RR< q$)g}5@IQ?DZ*l@LFhT+_8(pO!u0^Zc{M+BMp8GFnmJ\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_119/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_119/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3e9bb851b1575d4ba31368601166c3a71b19bbf4 GIT binary patch literal 2851 zcmV+;3*7V{iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIChe0CuuSnj?&grDgp!uQ4(DxrbUY8n13cfTaKi`fWVT3guh?`l2YPM zdzl&B1-zpv>Cb3F|s4u_uS`avAst(}i_5Du*%{vlrbYy2`^jh59B^0DbUarNQC z%-yZjPaLgWb{z($Wd^6**w;J{Cdbk8Ug+onaq>ePE%~7nm^O-s3(<{7FfgRi-qy!P z93AjO*GBxYh5Ep*$2*$uVb%4Jqk5)?EYm@lFZCT$^?X-XgQ4$+gP}TQ!mBv!9V0zZ zO+yugZC>}079bTv%+NA{j1l@;LZK~i$t z#r#H5khpD05b{Dy%todUGYQul^5aUq9!IzMp6T$A&mrVduE=t&)l?g$W~o}~#L-ul zt7{e?I_9MKkPmE+=W4r^ENSzCC~XSs2~5UcH4OfDTlH2)sdO5E13yH%Yq@?Lz4N#x zE4!_x(rE#U+vdP=ePo0lq;Cg3b|a4 z^t5E9S!zJfuf3p`&E>^B3<#X*n^@!e5b9pFTalH$n*3O8b(MBkiK82b=pbju(H$8& zOI_u$Dz|o@#L=fbTwXrJ$ma{2x$VLxe}YbZ(;4uXBxq?*u0IDqkZ3US`Du3g*h-QJ zzhje_-QI7s%C)^(r6U8uho-$__Cm6-az%ckwA$({&%h&D7%Z?-t|=`@_?^Tr@#bib z8%J-qpO@q4z4?*?BK1~vy69!v`60>M`6Zl%q9N|Fqsogm%v~C5rTYTD)iDUSIZ5xUTRjMR^Zm@%3N33%WlDif7~Jq zzm${Zu3YI{O3LD^T->V5YEqYSy#Mc;3kyEp$rTNACnr3}OGV2`K%r<4cXGL+XYNS3 z2l;#vyGj2>(KrV^V>%?FZD#No~i40iIl2U5PMYa~Q4PMTuT z1t1ZCgTzuQqDeAcEPlZSnx9~S;K5mnHD71&F}2aCjWyILK9d+cWUx(*0*g)#CJa7v zDc+?0XQoGSiVO-F!j{iq7E;$t#52eRjm|WBXCi~C%{&&F$&?rBrP%lE6dyAw9y1s* z7&F*su*NI}o+OmNOP8g4CT%d;V-likl-k&&)bN;MgTV+JH0;Ri&q@>4;td##Xv1bl z?75)#S_MU!rCzY0n>)(P!f1FhtDWi#>mqrwBH?3%&u*2 z)gohbLh%?eT%kc1?J^6sJ&9t84aYP_ZZE~(1SxbvCYnvLhUxl!n}H+hrf=!geq=KJ zET%pORtgOYCpwKZ85=1+Wti#AYLVS%vM^#WO}eJ(vuzS^n8Lor^xKj~v1zc_q>U5C z$jdXBI&uet6#LYCtc@5G+V6THP8-;pqV>AEXT*9j6$Ny%YyF#fEn>$QmXN=6l!xq28ajARP`G&$ZbJuxYWw(46B4ZLE#Z ztUZ$kyWLKw(o`5}P;DlU(wiL>p8lX!?p=_sAV}VMR_iF;QeCYypT*H97Yuv^8rBG> z>KJU5iuw#xPoixWH*-1A2X~*BUcfWBtd?tXyIum3aBC(7vLN5?PzBJIK`wrFcmU6T z^1!nXkG}j+jKygVNlP= z;qwJ?Qx`=+-R^H`s-$b1swQlUYGJD&Y$7ecVTc=$1rT@TT8Ai$Ic=Ayqgrz}jy}Gu zj!Z|lLIdR0yN%Y@YPHc;+a(3`;RD9hcF#=9(s<7b2d0Dhf$e4CKRFQ$MHt7YI6!t5 zh62s95Xi9)r;C&;O1Dk(_NyW!=zUhk?bb^&T((6bxZr21vfrD4-m^G|j3 z2TV=E8KKo^!>qfjY%#7usoaAFHM(^Llz6@Jv`btsDxEI)`4~pjdaG1co3%Zq2C7!6 zG)YDwnQ!H0Cy-9JsnlRqNlo0lC~S!|Ck1=|LfC`D@ZsSwv$}^2*Vi)n&9%(o^P}Ho zk}67Ey??2Sl9R!sZnf6jYn9b*rw%m!Fbo0@7kM6}3MreuYjFLw)HGMdD2`&)8X*&h@6~VMC`rz`x!Ryii^)9(%K-9Ov#p z#OZN;dRSea-m2BF;TBclzWb32#+%-0FodU47%dN795@1y2S)c-<==ace6l0f+O~UCpo; z-83C93~=(g=iUD79hQm%Ki)rEURW?tKQsS!N$r~!TAjUsTF)3-ps7G{t#~^Ff1l5+ zGeS8tn~)(BGSgwxCR;?tBWHY^fq$NnNe249YiC@{k!m=%I(AKm*tp(tVq^4GC=(&G z1G7L=X@;uf(JG9to|9P5tN^j>w=a3J5`K!+K*J~5MpYrRvpGRUBjf~_3-D-#BbQPO z=yGOYZ4Dsuc2*99m9-1OXXxNy#dR_Ut>)Gx z2nCufv>lxG6{NK_)&qGw9ORC`(ZR~MFTeQqWlH?KIKjhFVs$?ub^mBRb9sokx_`8m zfw?4P2B@7!%s|MaOCg1;LyA|26t5FfygFq5>X7;Cgv?(ZQo1^%^nZjT^>MvwARd0E zY9OxOl=RP34L>>L^{e40hrE6@{AkFz3JlyI+s4S3CH%+4SSVlIvdB)A_&fh2+t&TV z;Qo4MT3LIVh0%Iu2>T`Sr>*&FdQ$?4@y|)X^GzpMT`9W`f=w25%FH9k9YNS8U$tg* z$jSK)KA#bDp1ko$j`;=#HMg0Uco2I_ZWtu0C;IfN&xRh-$sw|Q3YyT=6<;$0WXRA< zzvL~+v+r%q=mS*^hzUObl&FIGyiwrtoEU@1x(%`u9x|GvBOBIV~oa@6Q#B!Bsr9ZKtI4s_cQwsm7F-82kvC5h(HwI$2o?}&CeIV zeqTK6&#trE*JVR;i7Cm1&w(fI^GUE*i z!Aw? z*Ew7qM_mz{S=Z8X?!gbY#loUQAZaP+5@MpiD=LJQrry=9lE~0EGVzU$zR{_^v7v8l z;u{}*<5PVTL*K;2H#zzy|MnefbYw3)SB{q)*2u=BK;LH^k|nYOH&LjZR!vRB@!9*t zac+0;Dw;2XR5e;y+uhsk?kGMCr|OXQS(9FBlDgnwNVl4#4p6lk36$DE1PYlxK!)SU zXdD@tAfs_)JdTV_knuP&8Am4nfzrsJ^|y+|yFNLb-(OjJQ}z9Zqu18tT25TBpR7w*3FLy6+Lws$f8Cv?Qw93ua|$qy ziL|XbB}gsVu6=pv*tO5YDCpXYL8og!`72r@e_bI3mp49voQaGwL^6gMsxU#q*Xcgx bc!>$D{6Yjl_#saGuJQf=t~adk_y_<1%U>do literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_120/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_120/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..22eafe1bcaf3e8ddff8ffa5e7c3f22376371e055 GIT binary patch literal 1538 zcmV+d2L1UTiwFo)%z9-4|6guzWMwXJYixQhbZu||tyfEL+%^!7n>c!= zgLhj;`-~m82#NrPgP^T@NDf7v1;Ld@D|#hTA*r>Uz(9Km8i2Q|hxYIE)L+rR(xIf? zwH>%|x)BUZB!@HK3_o%|{(R;4e^xH#kNKRlhS z&&;jU(_Pxw+RV&+k18NOlbM-uGjr7wJYfAi?p!4L2&-r;9|$=JB5^<>7(#>~pYHDb zkeQ`avq+ukTwz>;45$ZZt=}~V09AjO6-0$PcBvFd1fgj%? zAd0x}N{Gb}h-J;Vd<;$m`mD4_IR_7vqVk9!wgOEV@{Y#NkV>Cmq66YnO%;BO$8Te+ zAAuzmP@f>ci1x;#t9dQ$auO^a4&q2Mh+ZMxlokmQ94jN0Cb``N*_lxZGUb!eo2jy^ z7E#R*eL{73BB{HhsVN_DalpwCq_RsssqcYgxa_zWhQKNJPEhSeLM3h{WGAx87Hv|9 zTZxDwq9VIueky5BBQw)N!W<5R9%g<>4k*J6KWR2Bi|ooxf)`#=vlt7`>_U_qXAU9s zBJfYZQ%DeYWKLyQ8cDFhS z@U!^mo1Fm7!`vY*@d0YN4;okuv!%?azNVHHQKBM|FO1%cgv zeO$Mh)QfL|q#xY>{>gJY`+lQI@YLd3xmpb?Zb9rxI^{>LhM$l;s=UyZ+L_?x*WO-5 za0R-8LHm?(`;LTCm2TI4equ^%O1!OU@V3TyTNlOKo)T|+8occ>-u6ZDcBaJJnFeoX zjJNaOct>;WNC9{oG49y&s>-+zhmR!XeW*6pI~d9nQ5thK?%U|pY9~Fo_#?B|=%S;& z%Io7VULTKvkI0E0y1CU_4r;Bt?z}r>U9EL%4$ie99fUTD=wQh1J0Y9rhisi6vNcV} z*7+gZ=Z9=h6S94N$j?{Wm|B-Ll$LF=@C^j3L+FXBRHA)`U0}PZq4f`)=*i~sP3yqqq*7c)KP*Gq9v+5 zHBxwlpn}_Q+iojMduEmOxsX8M(1RowQg6+*Lg?qWHI;R4=@2UW%C_&|ULgkzFJ9Ix?Zr%MtFGUgIlPa>q~FV)eDn7o_W9Gy6P_n& zu`cFUER@Su-aA|VR$~*|4X^EYg5bgC2EI0$KwDnB@vzsyyYO;uk9WAT%ytRGkiE%5 oKLq?Ag#9-eU=AF>N3+pY3iF!Hd7FLvSK4#`1uq+OuIdi}0NzaU5dZ)H literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_120/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_120/create_stimuli/_report/report.rst new file mode 100644 index 00000000..46d64acc --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_120/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a097 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 120 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 120 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012304 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_120/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_120/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_120/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..2f6c6ee7b71e61b7c393a24a13501572d17294e1 GIT binary patch literal 2848 zcmV+*3*Yn~iwFo)%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}@8`+YbIChe0CuuSnj?&grDgq=(Q4&?frbUXzm|rG9TehUZfWVT3gs)%$l2YPM z`em1ykY+1UhxTZsR{&uzm! za}j6QKJt31hA`JvG2(FGx{l{Z;XQFS(ndHi{pkB>?eEd+Xf<3`hRDN)V@K6T3sZNu z6F*V7a@lp@8>Zo(aU)N4U6>q&%lmusWF-A!|#ND{r5i)pN31w)@8ye{JoG7a_Ov)&gSLJb}_e6 z%x-YP_SV++W<<<}h6ghV*PGIlO05=!xB0GN^N`O0wtYPK$>GZUKGCjM3m&c zWXk-EX|*f+;z1PNf>8^lVfAE|B)+Od;bJzE$&j9= zBsWTR==rVdchi}ikb{9NXLtryxgLbNU+q*Rd0&*CD9w)C>c~-e^9UVgtSG!IL1(EW zKT)LS-qR@jjEBq12N-#LVKcK`*yK;qnP=F29+Lzu?Mt;6;0F>7Mjk)OP7j-L65)4b z5VJc6^=4Vz7b|TE2tG2bU85V2g_SGPQ@Pnvrg;V)@xow%m9i)|A>nspzr>rZ+D;U{ z(|S>k!uRJ(3W(I2)ybllY3D~IZ?j7{4MjuTXGi6iEttDBQqN4)hMK+kOs6r%S%R&J+s&PPwupn>Dd_L!GCTQPQBz3>e-t-`q5~jL z0QO_cd=ZV~=|b^K&R4w{X9@0~Cs_3~2A@zHmD-pCmE!X}g9i+@sF82d$^MwZ=MKf2 zwEx_2DNc}1Aw$^o7|cTInu&N0xuDURM)zD`FtwS-0yCNNLfr&=u9e^uCdDHLBL-sz zdkj{YrNEPf@^|R6G}oXFCVNamG?h{t8I&3xQLHl;II7z+5r>IqFBXr{hr0ZA$8L;HEKUJn0^*h zpM5idI)!76MjDUw1fMa?G-kEP>M>auGMFY^Rki6h2{=e#&t&?oyh^d5v)G`GQ^v^6 zF_=1X`uzlZ)O@54857#?xB*TY*c~T$jNRU>@mJV+ceXRdFTa=pkd>zic1)dO&*&!& zSM~g);h~cR8z9hn^A@DTMx(hlI{`K=b{Lv-9HEWXA)2xV4{w} zR<0<|LG{GiW^pr<0ex`qMd>9xgUd=;lv=eCh=kiyDUb&Fc9$xEmIQL~^P@v}{*wou zb#(mIUwZhfxPv@Qp(6zfCFZOUK`AzXmbBNdR3O?z-tqc;taW%9d6r>=GQ*&rkYmG*Nu2tZDY zSuVQ;*LjIq1vKIGQF{)${|2n+eOdxyLj-ZYJgI;@h`{%r$%8I*Xf@~lH#FUsu>`1u4zlv=Y?RvO~IEP|?)D-DuS zNal^q^aRrGG-MH071zZ5i^7&jb5gJmE`&Wi3LYH|Qmgw&cRV$f+gwW>y*U0uDz2i~ z)d!cVC_WiH?o`FbezUA}+BKl@r-ARgxXAM$RY=+N9G&aMJ|P-8AabPM!R^x1G8`Vr zNn?>XhFgk|FPG$!GU>K2+_T)|y5fQAAs)7C-&Id}G$u!BJn1d+Lp5f2)iAA&iI+*w z1jC5{vRkd}b;_k@Pyt$?tK8SXF1|4i{&{0z;YT(RQfkEu)i-52sl#7w@Ymz?#`M2o zgnD9km` zj=l?Tc?etNA^MKf>&1h9;Mtl3&z44b8=efF|6{Lswh9~Du#YUwUUxNuZg|VE z-N483>z?;|(|1@3_Pyxfe0gC(N4?bi+a;xEm}qtS0%|>_tG=oL#kJy{6#RWLwN7Qr zsp*6inUInk-NKcJ7+U(>;O<@lJBnJL0G`3l$JDLJDWpBCWOntao>XtXVtKEG~V@8yN^~g>v;$T znk=wvob(m)Yiq0r@_0DR9D}37m2X~u`OWKu_^dd=!*Oi&ASU(Tcs+G_h`4%iyq1Ew zBxDMx%_62CT3WbW#ax$A_?T^%xib;$hx5t7u$^{Rn*_=T#0 zxO!XCzfd*&?2y;5hMyhs`ql80A?GU4cYbOcBVU&ApJU@}`QnyEcB#0d)?W-n6>!|_km&lv6=Bw##3B<;~BmvhmY=3p7?AQo4Su&q~BF5XKb+W%VIKPc77D zyNZJ1&8sJ2FCrn^Of^gXk)(T(1s@>C_&Pq34`I7z=^i_$;hXv9_s!So_wVu1uC_4` zmu;sS&$S}X+ZcWrw8(ZUZ?u$Du@YHuo$!t@ZcF64)fyUKB1SzOq~d;t`r^`P>xZ$i zx&h~QYTAB8S>IiKZnLV@R#Km*L9yRTrfLAcP9(qmyN%__=h>51kQK8S&XPTbXZ)ch z;I)9B>Q`7%YaG!A6fxX@;0oMI7GlHV{7@MC!AUvWG$dm$21 zBxa?Zv5$SO-}%nZtG~0&_o~NzBzbXBKveJo1eXwj9EF!uDH!ioPx0-4^M}9qOMl?j zh@?4qw@EX}NugEZ-42Bc=vO z%C&bZk#{!}B{M#%tgQ<*LTBp5?o{ba$&A)-saMR&S(Nx zPoqj=70I|jm)0^W48C{5F1i4TRT`t%Z8Mca`%FNlw2jfpaKP|4cy^;ZI6CfkIvtEW z>}qAH#r>7OFWn}bLxK(|S^2z^Xh0#+P@o=k!s;@ZOEfhsE%Ty|`{RF`YfGvNLsS8h z%*ukL*k*W%Lk+o_00~%`r;o#u zp%0rArIe6>F;rg=^sV-$G5NsaCZjqf80eU!)KY^VbNPK-jRXWd0Zj=yC}=#F?p3)A zTx`JHNxWk-}xKvJ13LG4aKHMS6<6VViswn)UiLJ2{P2o+09O)D6=l^z1- ze3Hc&`8kF?InM_ zdvP7@!Pj~IJV|j5b&Y*qC5yWC8WP5zy47$R!N$r{49{(ok+L%m{S}wBzt!?IENj(O&@ZnO z^ncCBHfgenlagRM+e=e+6A49!KCWz<3z^_m879&@w-sbYl^Wac)NLZ^=!$@FvA0Aw zHKAbax3Ad2=x^1jYm{K<}4 Ct$RKI literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_121/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_121/afni_proc/_report/report.rst new file mode 100644 index 00000000..090166bc --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_121/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a031 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 121 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 121 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.076281 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_121/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_121/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_121/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..5c20ba523c5806c6cb9096269f7acc4d987a4bba GIT binary patch literal 2543 zcmVb!>EBVPW_SLQ{gB;GH>?ScC<*+md4FYL?#j|m zmfpH(I*Ex(;$vwVp)iEOS-NqM_;$>U{FtTdQR2tM!`XNxz5D<=#(cJS?5UHbhw?b^ zu>8`+L-1}O`zQ*j6@=KgLK0$^_?XJ|p--$Z3T!JLM?o?gTXRojizb7Y*p4mYSS6(- zqfAD#wsQLp2Po)3#dmcDA zlD4lFSX(YBmF?2q9OnJ6>jwM#9lg^t)m{s593|Ke+#t%*cOPnox!-AJ&C=CUu~=l1j$yXzEs%T^#)Cq! ztdyanB$0?vBn@Gz8_m9Im_5uV&tzCx zIiWa`tJ}qU)ou9|K8}b#k||5j`hlT80XvXrP>SSvc81i=lL)_4!ql!FwK@&$KvR1L zIC!6Udt{KXz#6LY$n12jMV`TrJTM4QZD?i(5`HbW%dGjx53=-~?vqBAzJIowz!AOE zoCm$Zg&(rKoi5>GDn7*xvDbXsg|X{XbnGG@%JuSNQ`a6q3g=;wLA4@(7Z=J>nKfXr z@zgNYR>M+{)P1X~flrr9%9c`P!Ls~ydYbt(OYdIDpX4PmY^%c2VlI@#V@cQQodYFH zZ}OGt0qFEpzBC)nM$6Lc?IzR;?3%tI_05CA4lMk`4h#H3PB!|6+PjdH)z_K0q8nCT zmqvE<-?f#Mi0&0@4%sV~cFUET>*t_a^TvC{Vl5T%$oQ->NyMVBpNVc8jH& zE#M%^afxAXZgzXOQmWBpZvjSo<>GFoT(c3IBA(_=r4|6FFhJv6vr@yee7I8kN{UgG z;}XN8lO;xxE#Q}22XP&Dj5t222zV@Dk1NG49~{pFd=hZH&E+Q~=xu+2VS_u;lSf~B;b(a zc!ZXCCg{&Z9l<_e-Uxl}1f870C)`&-DYR!?9!xkEV>=VIA}GD$c!~vIp}~U=gh0Kp z!f{2MPH0Sm!4iKLFQK0Zvw0jN%Hxkb0ZzD?p=)#f2@&KX<~B#}5;`2tY(CR$>MZfG z;F&E%i@l+cg^7T9(h;&3pGm;U5)NHK?o|-S#1S#!jaPzFSQaoh6pTho9C7t2ng}Xf z9)t;9HfT6o;u#Hxr;R_smv{GGvG&y$rvMn`t0fLxhvSHhmW>ca@v;%&mrG2i;S$Fl z$4>ZaRB#B5&q~Az5_@=7g9&^*J<}Ekz(-5$hUOU`p-s^QFWL)gu;1_X)V3*5gJwHF zO4oW8oc_R7Zk%JSKuF#_)Ou#Wu3KvRFiSr@rx0OarA{&@#-MAe)*-N-oZGB!7mL6T zu0N?ig)_KeH8i8E*MTHlSx|uj(6?)x0dx(Zi=RJ#2IoIJ@Vw_QzW&3Iew_>0VG4px zU?{oI79*5e8{9JXd#VbveIp0aNY1&AY~sixJ}@(CM;QBZxvFg2ic+%f4R?@LvC+1L zO7|42x>GG}V^rR96rjgzK<*k^k1>lg+%9KFT6;fBKe@<`h;O@z1N7>>R_9x*+3H%| zx(WPnS5WnW6XLo^4&7u#d@7H;umJz;GB8%4pB~c~dj;r67ojUlL3gQ_Ail5*=^; zF2CUzy1B12cKhk;*==mQjNYy?qIHI3{rdc(sJ%nD2tZD2C8@Ln>%1;R0Zq7l=!d}j zFF{1_^Agb78j$mic?DE}1its!w6vB5bh@uI&OhhT9|$!GcZ5!>3!|>z7K`x?l*$bV zsMXg^VB)&^xX(0_y;E;kZSBC+fYq96n`IP|d8xR#f%N)qQ-i4Tnz(VE z*fMI)3ikKsrhWE2x&M5;dHVo6L4-ET+jlmfKY8)n&Af_oQ#UVEQGPRc&~Iw(gHFTh z_jGXM%W)isv?j|yRan^!14kO>Heoh)H92)YcBTB z?OAEQu5^qdEW_tI4$&(a&)6-R&ZRYZf^rYv)Xl47Ze=c+W4IAOcAM&czfpe-6<{Y0 zlD-4)@{Muy)1{S_pZSQeQmdV-zJ;grI{d{te>tCCoBr4Ia7*GB=A6{Fkv%@M1m_%} z%k~n`*Gz`qAcN(Di`Rt<>UFkbj7M76YU-T_bv+v&ryn;S^o`}Wh~avp0rxnlxzF<# zfe^*xy$d(Od<(C(>Kg3-kMl~SVGy{ohlnd&=dQtw^XvNjvbr(fs?BdXD!U$HyR-`f=1n?7!LE! zIEj2afU~8YUV)P#ihu5jr=%!574YHorK_C`(lz3TNlf$Sp7(}}=PQfG@QwJlgNK{2 zFt_c%^WZ4HyBXz=X4C?g?rtugpYCotC`L?lr*?G{{)opu1FV}pM#1@!OBdREo3{WJ z{`kW!iDePRw-+6EPPG<;BsTH0x19OKd~_HQKfZmd5%~DlovRS&VtAIe-sYu^3uP{h zG4ibH;h`c8Nkn58PcR(z?+X58sqr?}nXmF<7<{iIGQkeFZn4)pnNI;<$n`~-u-YZ1 z#2)n)(K6!jwi7bKm$Mv)LNRZbD>BsjdXU8VqNks|>A^I_HakNb$FL=cZAOU1*fBuL z-!QM$9iLbw8tZvZ+UW|d7+$t9*F6Oy-If2dG_N|18|B~s6D-BdU$afKYw+^kV9Jy1XivjTJX z<13)fn?p7T=ipEPbOGqYxMq|~z#u800P4dE&;?3PYe0q1pj-`EYl?}^p={md6lKO6 z5`vkk@)f1XaKQx~XOjRZ<bFq;P5;Y`z@Tb(L>rfGOG(tH}8j5MEyN0E0X zP}0ZNnEG2q;$4><&hM`*y{Wo>!_jNYzLvHJ`pLS4l|UX?seOrf|Lg8Fohr~JpHqNw zOr&GYDM4zZdj_v+=7=`WrV$f;#pMn*wQLwI%g3FtLK+Z%)86p|O3{{vQ5$N=Q ca=gR@RzV@A)9^!_1a0I00kmjCG581o0JTXVEC2ui literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_121/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_121/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..bd1c8d3d47a039d0a6c939f700d66ec52851317c GIT binary patch literal 1537 zcmV+c2LAaUiwFo(%z9-4|6guzWMwXJYixQhbZu||tyfEL+%^!7o1}gvj`KiL6g>!= zgLhj;`>YeU2!a5HgP^T@NDf7v1wl!p6}=Lvkkr~vV4%GO4WL`qL;H{VEBaSDq_n%X z12;}Lf?CX0# zMZTPA7OPX8*BI9zL+Zn6YjjDpAR&v9*X5AL3g1^vFH!(s3yGnuG$WBfb1#NaNbMm> zW1!e8v|VU#bRYCutrmuFdZo}96q4^1S-uDd;3FZyE$6FM#1c~UgCw-f44f~iih?Xj z%ee2JgllptQ$<7yoQxL;7iBrZNhARs2~6f9CJ~gTNm}H$_JoHKai$^&h#3$WqRoAc zlZF5(VLZ*Wn#Q{t3!lcsI`kv(hZAZy5~|Z!=$LuLqy7*$VqJVZ7~smJafYjbAKxP( zioEYgNW=(;QOzWM42}VPURh+EgAYnkc}S33$)hZzPDUV=S@LOq_a(z+$GtEDPPunr%y=3`PA~-V(QEi-gq~OI6 z9HXaDHYQ;bUS`03RQw$7#1)k#iCH0t1&!B zWbxChg$ow~2%VE>i{0OKm3e!p$#utQ%H+E7&60!9-OAc&Z#mTj$4qd_VV0QP>ZFth zR5|#U296yFrAQp1T%(7v)t+G7*obt`+5{m%CAFQ0ILozy_0_13qxCU~b*F~J?!7*0 znn;@EH$l-4@BQ%PxtV>h)h2jqajjgfMm4t-_B5R8qtU=mNFUZ-=vw0xc=ffrTN7M? zt|91vGH%|nP^#ANyU&kJ>CDKtGYj9&gm34(e7iI9?asotJK@_sFW=sbe0#I-?M?Xh z{+sW3ju|NlZz0ERb6(XM58&XTq3U(jQ3;9}GFW8a^0ub~U^g@`M7hf_~32 zX3NvBtZ{qm^pRywD(i3jm}6`0gnKo};X98uKO=Ygk#+xEZKct9`%QYhnpXh?ZFGsd0rz z2v%?#ZrAM;nU}A!0T&Vo9QcshLh5aPr7ZOAZA}&Zq8^1&1o_pf^$23c)Hq_nognHKfut};M;w_P25}T*5 znTuFVOH;#IV0FlSoX^c|>}|ee#+1k;mYzHLA{N}z7T?%dJyvR$#WaR~?GzZM;7Xab z$_ZAv%jHdnP&rVheH-@**=Kn1GG>{VFs)5>{WhP+`&dE-Uh(A7-+!9tuY7@U8>Hd7 zWUp9QE}Qb+>D>4H2M_2*ceB-Qg&VLLYy@7rx7lq6fp;IeSbq>`f5` n5#awY8oVh0W8eS*nvJhg7}sU1+v2-NndklsSxWVl>JI<_#C83H literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_121/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_121/create_stimuli/_report/report.rst new file mode 100644 index 00000000..6abf0263 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_121/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a031 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 121 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 121 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012563 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_121/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_121/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_121/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..fd91ad5f090c724f2ebd4da1461d51a0168429f6 GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQSA z+r|}E8rhPaIJT2%Cu!0QM`>#*6#){2D4VJh(;`J<%s&&LEl1K|KwwEi!e6ieNhxus zz03^mg5Kq(FVF|*eV?O`(w+q=>{7B~r%E*T@Y~(9=X`r`u=p1E>*C-4`N=}^7k%oO z-ie1e(+QB@*K~xro`w;JL(g;lAdYTJXCobiLo0~CkJtVdzl>L-Wp#vnY`RWdd$=%j zcO&%^M=KXyhk=aE&z(aW^+1CqD1OE?QfL)>9Ul^1Q8yEN8LEX{$Mz4lb8OOGIh z(`A{xqR4+8WD8t@G+?s)LRPAcidx;P?x<}EI9f#%^K7S+&W#E>ngk1`*7hOx5&aT zE9?BXP{?HhqiM0lFne)PjH@Kd+K&`OU##WxIF`d?Lux#ER=MOgb2n-Qz*Fr zL;`S-Sc)YyNu~>>&$&SJ6Pzb_aGGMx*BN|7Z8U0Q4K<2SMFtNUY*VAaqLYIOgHK(G zH);Q==~0{_gF=R|c(Tx_;kg;E1~ETROELnM^;6 zsn3CxLW9DIP9sgmMv6}uW;(N4WcQgYj2KLlu4(#gn* z3Jj)>+`%BlJ~ba}BgTaGyIzRX2KFW?o?x$k*7ytTyju@)rO!V*10XApQ|wv>#lAU6 z8=mF|X~RcHDaK~YtJUVSIQsaUfsa7L8sStO zgRN3kpMmO0w9VpXE(iMH_Ve-!cm`M0iX^w|We^EBW>O#v^6eH?0BsrM;-?4u@cbta zJp17Ai$C}A7fA{X@FL~D=@QK#p73ABd1Ii48dPWXk zC<>dpAmr5t{rj3K>e{BNmu1LW1ajn-Fct13Tyk~_2)4}|}_OkGwoCt;jjN=m=AUg{~ zfo53<mX?5wa+oJsBFI+(ZG zBugKC`)w*PErc;SkZ^dI`9pHdk?YD%ov7Q7U#)Hf-6HaKkqE6hk@cJN7p2;H1_uGi zX(`X;@56OoVpai7IDOQgf$o0`R`eb%0jVj0IA5MtfCwV+-KUBwHB^w(-8#|yQyu+2 zQ-H*JjB8LTcVIz{Ze0N-Uavmw64#4Lrwe{Qf)TaeDp%B|w5v#2#Zl1glDF;?8+tOQbm|*n8)~?jM8?4~Ci5U1YevmMLtmWe%Pn{yvjb zQR3?Eg(^x;29LTmskz&#sNGH-X#8;)1RgH&JV+H%HhtIN`iW17Mh=J^sdsR@^rQlZ z2XfL_B#z;hBIGM&rL0c7opbjrH@&WSsQHM8?K<$ZV;)V&Q5sKsOZ-Sn7+y9^t7GbA z+B3y)B7p4Hsyp3E`6*O@9vT|=HLy!=jJ+S;T3GmzO@x$M>0I^Am`>~P7aRQLIK49c zuNa}8*d69vudZwQaPAVEBY@L(3h*m}X_xfD<%5IQg#+qsa>vL|q_$eCw;q-2@$e-2 zu=1!Yr+X2>CaO+E;Lks&L=E=7RC2cM=TYsT4-bLl*~*MwW5OD}v$m;c~R>L9v4~*mi`v z>4cMPk=x+NyOdmx>+6M0ZgRh<7RBuBXKV(;>;SHcE^q~S&@FjB8YORlK6`^VK#*r2 z8KzHO^-SXLqU%1wHhGA??e_c0U=aF_?!vRB8Qp*+FWKF&633YneFNSG*!$@hW`9l&|>Xe9z{PktyK{aNPA_!&x;Q15LJl%^9H8+`0&% zK$C^GgVVmExVFZ6AdiRr+#xvHU-{)4Q71u$q$%0Oqc?7wW7xLt*){G80 zIlsZ@Gh)t@Hy+6`-@u^eHVYyTVsFU}gGBX2pIr9Y&_g;oL{?5f6Pmi>Yi5898G7lL zyd`<|y{#F&uc`qt!DpWmRZySTid=ycVh~w3L3YAJMssvTL>Koz#`!2Sxf}oh;p>Gt literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_123/afni_proc/_0x07d961123977aad61a90906a23f8a450.json b/Afni_proc_through_nipype/_subject_id_123/afni_proc/_0x07d961123977aad61a90906a23f8a450.json new file mode 100644 index 00000000..9a2ca45a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_123/afni_proc/_0x07d961123977aad61a90906a23f8a450.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "123" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_123/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_123/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9bf4f9e3319f49a0079b1b85bb242d019c58591f GIT binary patch literal 306 zcmV-20nPp&iwFpR%z9-4|6gftaCLNZE^upXdMu&q~BF5XKb+W%VIKPc77D z|A>O(&8sJ2FN=h1Gu15lN0RPE7JPslrF-n0hHvJZ-#1_9-@m6P``X1k zTsN(%J=cmjZ)5mj&>-8Yyw*}u#Y$wswZc2XxGj-u*BhvPi5T^?mx_l8>WWLFt?$Ri z>KdHet7-cQWnFjkxy!0XTSD~*vvXd1vAuUmQ6+e(sN^@y1N32FE z^gQfpWvRvemA)_C23$abfRwB-Zzmd1NHi3v2SHd}26Ks~hNWd*)P8^bZ*y%)bzz7q zK$2NnFcn)2FOeK9Qy9k$%X2W6=7o3n&sB^bNp2XVBnVWA)>aKglQBrNb>s19gqbNsiP^x9X9$QQ?uQz3H31U1G7lez zB|{%JCrT+H0b{7XB#5m>)0li0W6<)(HGRRC8r+Fu9k8v z)l`xRXcJPti0@Q$OgplC0+PyPiE4KXs1ZYQuPWNu-+)>697TuB}h(G<=aLWl*VOYjWRCIn2wk0rnhx$fP!*JuMvo9)G>1)7t=ix<79Vsq2-wwCaC z_xw8A1J-tPt(_uACy*|*lhC`{3lnWb-?)iQqT4&hyw1G!?(=IKM6P0Ep`x9d4$g$* zJ}TZL#A+nFnGu{2B=8_Qj(Wa~-7X(VrGdaj0!786ckXuG=c*B9{40OJGRD|B6X3R+ zt}~ap?Z+w3p{}vds$fyKR#U?GGj}tbMzXQ;4Bc~EWTfn@hyIGo8gI2c3(Hz{<@Af| zIQ?HUvQ3(3;-n-P&i2xj-N1&TLmgK(&81B6stgn9o!bmDqe_kCcjh**>FBBf;bM2G z-P8>QeZOy6v0X9=NtWI|tgfQ3Y+ z97kIKQN}s9HuSG|ZVe}1PDZi+`pdun2+yBxoyf{$h{R?!#IPZS2HNTj)6+p0Jvto@ zDNP4mdfGYd3~28-JE8qY*fe*l^Ef4&{M9TOxmMci$4TdSIE=f4K|1UtT^Pc!pPdfl z{t5JB{}z8tupIwW2Kdhy$NzISe(M24Dgjc|JDYA8=2b3JxbWY6QpV9gHn`TLa|r+d DNZW5u literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_123/afni_proc/_report/report.rst b/Afni_proc_through_nipype/_subject_id_123/afni_proc/_report/report.rst new file mode 100644 index 00000000..d39c875a --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_123/afni_proc/_report/report.rst @@ -0,0 +1,126 @@ +Node: afni_proc (utility) +========================= + + + Hierarchy : Afni_proc_through_nipype.afni_proc + Exec ID : afni_proc.a017 + + +Original Inputs +--------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 123 + + +Execution Inputs +---------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def run(command, results_dir, subject, data_dir): + import subprocess + subject= "sub-{}".format(subject) + subprocess.run([command, results_dir, subject, data_dir]) + print("Done") + +* results_dir : /home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/ +* subject : 123 + + +Execution Outputs +----------------- + + +* Adni_1stLevel : None + + +Runtime info +------------ + + +* duration : 0.072011 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_123/afni_proc + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_123/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_123/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e2b7c6048ff365a444eef1d3ea65a2fa2c0ac3c4 GIT binary patch literal 2544 zcmVb!>EBVPM~2`tIA@fR#WQfks^FFS*~ zpm%+SUgQCK+sEib^aXkrq_``|PJI*2X!z~fvuDpadlvic{$>5||NLYv|4YB{Nq7`u ziTE*&M##og8X}4%nuK8x#aVhyJL&0Tnz(WHV|M4S*$>(6bkmyRh?2n1S`XHi<}R=7 zWa+K*rjwYsBtDX65eh>XoTZ!liEqcu$d6gN5hZ?1Je*C|(u)tFW5Q>9&z?D1dLT~% z56iDyJOb~AvX7#WT0w|?DehPXw|NHN&=?3;4lev@rMky-gLP;rPNSvvv-BG`u#qb#KAG1a$gvm7 zlD4N7SX(YBm0Ia;4)gvub%XuAuHNmNYQGIQjuLDKZV+YZ`;Rok-0ODCeiyvBLdJd& zVJ8V8)z=Q2Evv0|23D`H?rVoxdI@?xT!84=C`0>J&C>N!u~=l1u3>f>ZIFBt#=}Cf ztdyanB$0?vB#mII>#c!mnERUX$m$Nv-oVV#i!bo=qL-yt4G=a4<|E7K?mf=Z&t+Iy zIiWa`tF_|&YE6EPk0RoaWy%t?v2W;4!44!Elp=YNoe_2OB*O2EFtsa(?QT=s*VMiN z4n82>E*T~)u%>D}HoHA*nP>1L4-5iSo0{2$gkR0=GHX8agDico_q3U%AD*rza76F6 z7C~=v;m0g*Crh}TicfJ}>@}bDVC=>W9l6Mda=rM()U}6@!bMnQSgpw4#f7p|W(^o@ zJTpwS-L%w0b+p2K5oC_uKMAEfJcONS9 z249&zfNo#qOS9Q(wk^HUX+f>Pt{E88z}zp~gN1+8Wr3f|$>zXN`{$Cf{w5Qbb;HW* z(#Q_~b7^fYqPxYqLw1X$opPn_`Z=i9y~%E|SP#i=rMOcr*J+T;x9iRc7&?otononO z3pj{!Tw>T;n62$pN_Cp-F2Q)WT->RY>o#Ij#IwAq)B^w&256jXR_b`34_E46Nim9Y zTw-{9yuv851^kNZAg<$15XZ+A0Z#<%ai!ShgX6h?j{}ZtTz*VKj#tRxP;l6d1S~>s zTA1+|a=~X88pC5nz+C4vR)oRaFFah~DD+nNm5}0@fU$t7fFl7TArv@7xc>nU%MJ-| z2-y=7Vk7R_jBwZJjAKW@m^ysgDH$zG6JiO+0>-@Ii9Oz_uCXwF=!GjB4n2;?0uDKj z$7qG;g8p385$przjnL;#(CI0B%zYJtB6&0)SDzUg5xXIF878)d*1(uNo14wZe23u5j#e z?1Zn!1&7f1v_zaBu}7yhn83%gQ*Choe6+-FXrA&B+7wOkvc04RdxL&o?U({JXm#?V z^itn~(;v9X^)sv$2+8{gTHhQrbW80VWa(#T6e0|))JYb^7<5h5Isn#_bDQ;Au?YO& z+SA4}ID?y3Q!{#c14zQpza@*SUZlrXbh? zhLZbiF+!g6V-}~lUCxfQ&R&+@JkO4ZZ@Y;D^y-6l_gkyg?peKt z3H)$JQ1yai;<`u<-DFIBDv!Oe0RQYVFj1hN9?=+k1?Y;A>tdi|A1{J5RCCbddHYoz z5_ChPaeI2hfMr`}gbRKaEc?Sb@GY;PY*&|5ds7GXZjWW@=J(&P2&RiEWp@#YPPTrR z-*61w+|wDm{p`)`Hnv?xZ`T>oIz_U6eRfgQ{sCMBAgA?`RJsT2ydgvZO}KsN2f+I; zKtvz%63{vtkn_z&1yq0pe(=P!w6+CwdZ07Tzu?gy2{j3Kgl@YBqpsZ+i}4PW%5?~+ zJW1Sg>EybK~Hq3^#5c_BL zth88HIzbVZ;d32_=(UXJ>=sQI(z-lFxrcA-=GC#VvXCq=+z24MEp>0uY&?MquoDMK z-+_1e#yI@Pg|)Sx`G~MmtDmX9rKgKJ{KYzdIiKE`{x|e+OX3&ijMTP~Jvp@mXB?ob z_6pE9OorYfgXM#Z*SQPoHMV1n$6C*7>D`A7J)0b*pEe&3jMcY@;YPCw_c*AzFY*_G z5XF<-b2q|#3$M2u8tng1^Gc&(5V*33h$~#@uELCq>-yrdy1Ce@t#4tATCnf_&w|M$ zJc=i9DkbUWB%ra6SQu}4BA8s7Y^Iwb6gwD$&yJ!KKbaS*(ze9jQi?@sWS48w{9e_n zRtn3X8Hp!_F|3NMNM$(aHo^!`^T(er-{J8G@*H7@MC_Gkp8YMo6k+PIL-f61G|D^U zB=YS5&X!Jk8BT^M{+TD9TCG$o!PjWxva!`zz=uZ907W@&9eFj)JdyInfBbP3zK|QsFk!Vz zN|`|d7+$t9*F6Oy-If2dG_N|18|B~s6D-BdU$afKYw+^kV9Jy1XivjTJX z<13)fn?p7T=ipEPbOGqYxMq|~z#u800P4dE&;?3PYe0q1pj-`EYl?}^p={md6lKO6 z5`vkk@)f1XaKQx~XOjRZ<bFq;P5;Y`z@Tb(L>rfGOG(tH}8j5MEyN0E0X zP}0ZNnEG2q;$4><&hM`*y{Wo>!_jNYzLvHJ`pLS4l|UX?seOrf|Lg8Fohr~JpHqNw zOr&GYDM4zZdj_v+=7{%@WV$f;#pMn*wQLwI%g3FtLK+Z%)86p|O3{{vQ5$N=Q ca=gR@RzV@A)9^!_1a0I00m0DhY4`{L0L+&m!Tsgq5Vhw75yt6O4?o9 zfg7hA!LUSfIP=Z$BlqJk7ykI?>bc@EUvQQlq~NA3g_v=0fe-DAivUz^E^OmF|2=Q~ znjhwMbCGbGKyI%15~v2EG)uCW3<0CHiI2nUfcFAY;-IENL9rwZ*IOYBks$EN|#La~4L^j!?%?fcN z6>&^dY*#GEBrRxU7CK0n{c-4F=KExiGR*LkcFVHJuG}nm=_NBOiQvpGM741i5rP*( za0H%0+Sr0gc$oqBk?{*{WWCCg#I6uc(_-Bx9xs+0IYjao`)W*aLoK#Dt%rTw1`0!x z>3+*itvXw#UCOmvl<5O^Pg>VD<)y8R`$dA&Q|8l(rP0sk+GO;p?Ru7iKQp@&R%3XM z$o!{QOXto75IV=tmSTU`Rp#v?CpR3+DO>Bt*DDS_cPeYAz3EgF96P}&hgo8GtCLb5 zQ03rX8aTy3C`IB3Q3F)KS3telR2wr{d?9>ET zplcX(NEx^9SSVE+4BY2OrgY}S+nEP%XNtFTR=nLg@pk9I+nwU=o)vFzPQ1N&@b;#7 zd;g7hGRKaTfHx82mOZcPj0dp)NK!t8dTXPHp?nc%30Kp;ey`Cu>cPbynVr@E9qrU! zAAb4za0+}vPV_J+tkw%q>w^vF-6890eb8`lt_|rRv`Itvtg}=#TkFE6=dVRwwnYCqw%7zo+c?q&?9cR;70Tjj`6F`c( zO4n8+&V3?3fanMCrM0mQiraLVROm?TFMa#WbdV^+Yf%!KJcl zl@nCCtL06HP&rh#eGB&r*<*O|vSyi=Fs-e+erp!-K9-Q7mp}RT??3JHmsujbNYY|m zDXv&3m#w^a+QI!^=V8#k7d#032cF;U_k9TaVc^p~v^\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_123/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_123/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ddca115f1ccb0d2c81bcadc9ce42d6349c0625df GIT binary patch literal 2849 zcmV++3*Ph}iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOQ?Q z+r|}D8rhPaIChe0CuuSnR%vS~6#){UD2u8R(;`J<%r6t5El1K|KwwEi!dI{WNhxus zo#~He2LFQm=uDrXZ_sDytMo2NVV9DXI8~ythi7;1-h1}qVsRGu>*DwS{&*qzi#~Bo z@6*8{YdXSQPs51Aq35}N5Jz{V^N|k1p%uj6#cO|yU&gD^vN}ROHeDyKJzSW% zyOsKhqm|39!@#u6;FKHtn&-jfI9lEd9X%jUzKf$JKXd}qM)7bVy734GhBVrn`q+r0 z1Age*h(ESaAK3MHNAo?bx*l>=&-9RGItcUSzGJGM@9JtW^xbeURHsaM6^FfJqz9^L zsChx;bsuQ~QZd8~EfdHXp|2%mYG3^0pIg8C_CJ4*mXKp8gj4ieAt#90ypYWol-yQH z+$iM>T)wcmRmjK0Y-IW{lW@HuKd#p6adeCCnGO&696}!Dsw_*brrIbs%e87Jj=r#5 zU9h`9LC%h&J2G^Z zyUJr#ZtXsaqmOyGynKj}&lfjyTg6TO1fBY(GvF~v(9)h(~Z2aAr#4CN&Z?LNqG@R>zDG!*Y9mo2DzZonMUtSU@*0r#{x5%@E7-55k9hv=EX~J5(0fP~3*zAZs zH#A`8_iQi4UeBg@z+jK!V4$UV!q`t(8^%9i+VC7o0*~hK8Rg0tdHRI*yCaI(wau+s zV2n;E9wUY;H0YvTW}&uMpt!(>V;Up3m*TI26gnXj&8Aqxbp5`~z!7!Rw{&VhGMRoB zQ=bDXg$9Kaokp6BjTE0U%yee8$nG;)7%`Y8UDNd0HVHUPVc%l~YtJUVSIQr;O#v^6d^)0BsrM;wOg(@cbta zJp1tI^FR0T=Sc^7m_kPe6iUKbC4y3F0xfyBQ>{X@FL>7<@QK#p73ABd1Ii48dPWW} z7KKe+5c29)|AD3!bZt}B@>_yhd{E49B2C;dgbm07h`Wl^ABqYVO9-hnLln z>F8EyfV_IU(fU%YHQH*stbjh;W=w7O%(N_x_pESWI+!2WUKak76Twh`aeRscWM^S0 z&@2mq9D9GdNV%$X+ca;#DnWwYWo6uMy)46JTO@)Dex@q>oeAhIJ1cAyXHt8)4(6>k z$zSBpe=Q{*WAV}CKx#@L&X=bZPyiA5_ESZb8Y;-?Zk=fUsg8b+ zsYy5^v>I)gb$695#x*FFd$6EJx2}K^uUDUTiR(qB(*-{t!iZXLl`Cpf+EXM@wMw-~ zG78CjBR4yNbh=GNf>k9oaqptACDNP}?EMR24-UhJhr`V39x_~C%ZQt6nZxHtzt1F9 zl(>5LQWYg9gGb$()ZA-T)NZE^H2ydY0uPsX9;6B>o4#vs{lq6kBL_r|)H}FcdQySI z1376d631{$5%QI?QdXzk&V_rHn_gEu)O^Ilb{%-y36Cb^D2=DRC4QtO46hod)iL!l z?U`aY5kPip)!lBT{1hrc4-Jj`3fLt##{R$FSXlUhO@x$M=|c6*m`>~P7aRQLIK49c zuNa}8*d69VudZwQaPAUZAb`_$3h*m}X;<{Y<%5IQr330+a>vL|q_$eCw;q-2@$fYI zpz^3Ir+X2>CaO+Lv&Ps&L=^$OYp~?=%>~Qz?v=hb|5rjV$AeR|LbG!{un%gJK6~uGu1{U=aF_?!vRB8Qp>>gCG3RD;{xUOC;Ou`RlG`*o$tO zju!?vdEN7NfA$Vb#epC1pDiye7^t6_f4ijiO$)8gUO=s93@y-9ptx4Loq@kkXV#f~ zB{Q3lArmswVbdmCM8+d$e4K%Qo{>og`o3#tT+ESbIJY`>O^4XH-f?1M^i?R6d}aq` zfu_<7RmY=M7+pOlv7T80V%e`>@?<6a6sv)TPqK}gLS|=kc@>S26JRdDqZN)^N-dzv znSr%6fXLffISf|TE(D*UgM$^2zhiVWd7=q!qp*#>x2}p4k=z8QoK$`@#>I;t3ww4kC3E3u2&7j!_QO= z#MSGP{+X)bCx^U#HT>j|*RO^j4LMhVf%{|I82Pe<|CAW#D;KvcvQs7g&i}}^b^kE9 zzn+;^)}Cfzw4NEleu?~PYrdLZmq23ta}w};(+O5rDz1ZIlLehJ^9XV$FNox;){G80 zIlso|Gh)t@Hy+6`-@u^eHpK!DVsFU}gGBX2A7Ay^&_g;oL{?5g6Pmi>Yi5898G7lL zyd`<|y{#F&r>X%l!RMb6RZyQdik!#^F^H_&AUok9qd7VvqKo?xf}ohu(pJd literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_124/afni_proc/_0x5cb1fba445e30746c5a1ddba11ddaaca.json b/Afni_proc_through_nipype/_subject_id_124/afni_proc/_0x5cb1fba445e30746c5a1ddba11ddaaca.json new file mode 100644 index 00000000..6d99fcfa --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_124/afni_proc/_0x5cb1fba445e30746c5a1ddba11ddaaca.json @@ -0,0 +1,25 @@ +[ + [ + "command", + [ + "/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel", + "d24bc0377b166d70c1e7e74f97b48e4b" + ] + ], + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def run(command, results_dir, subject, data_dir):\n import subprocess\n subject= \"sub-{}\".format(subject)\n subprocess.run([command, results_dir, subject, data_dir])\n print(\"Done\")\n" + ], + [ + "results_dir", + "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" + ], + [ + "subject", + "124" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_124/afni_proc/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_124/afni_proc/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..6819994f5dd0491044fbe0ec41c19a212a522ba3 GIT binary patch literal 306 zcmV-20nPp&iwFpU%z9-4|6gftaCLNZE^upXdMu&q@O^5XKb+rTP$IPrI;g z+FBG8Z(cnKy%Y)QW>!=3k0jfR6nuaj3ezpJ&fnK~_v+xJdRGUhs#O zfHwjpa$YsuIxk=gB8ID@JTbhEx!z~R$%YwN zz6Ca1C$v!<4+z|)PjAL>Hk&VExIBCt!{cb6w)~wdDll`?>FoY?fn!_!0l>GxrS|~< E0C4w?hX4Qo literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_124/afni_proc/_node.pklz b/Afni_proc_through_nipype/_subject_id_124/afni_proc/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..ddb2f350e0f75e170e291d7b2e01034de6c7968f GIT binary patch literal 1291 zcmV+m1@!tKiwFpU%z9-4|6guzWMwXJYixQhbZu||rB&T)95)cJ8$14r9p{6jls+8p ziw)`CoqfJbT1qjLl+e_DNby5M5Zc|@lYClfD{1fS6hrzFYS3HNhxU)@d;hDBcK1GN zC>VMNyDN<}^P8F9%)DFvovnXR{oEZ(LY1usBw2@%L)cuAFl@oxD9-~Knh|BJu$ zdv1kDnuB-iG?SbZS|#3X5XM1Mov;h-Gn2Jq?mq-qlDU9Q~}>xje!KN%)-ZE z!O+LeiBd{Pz!<782x6V#DS4%mP zY9h%Pv68STuB}h(G<=qLWl*V3-AomCIn2wPbJ6%8Nbv; z)|)cVLxyNkRC%9jT&X#7iR7>9YD}@9R=WqCXMHRKgC@zW-n`pwI?8OzM4?2vy@)0{ zs17c#JuhWaIXLSrw;PtSAKksF^hMZuRX{R7b|-6O#8~9uUnyiQ%-vq15WGyEv^1Df zSQBFVq-DzZ3~BkK6=)T<_CMcf;g9E`B7-=zB4lQ@+noNgwToY${d~C_)tuUE1pCud z&7~+9etkpBZ|d6xCdTgVeyt?z?r&fmo9o_vcY`*tu-Tq(TA(@UpPn8>6`Pxux4D4F zyH_{S9Lc65WFy=5^|=cVFDtAaWHO3l;6ubUNL^ zVGkAGC&X$byO|Q45F~IvI*bl{8M_@mlu84E^8|{DM_2An-RG(iW&9hz$1=v)857{P znyxdGxvk?A=TO(!msPN+TdgT!{E1r*r;%)|JVE!|CK)O_?V-Qovc_92Pr|ZRT{(Sv z6Q}=cMz%>4O`Mbj!`WV#vg_DTbg1LXrn!&_UX@`YUAc`QGpf{BekX1nn~ts;5H5BW z+D+Y1(D%F7?4b8|>d-Yx(Dlsy@V{IM9oaNgs-~@ps\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_124/afni_proc/result_afni_proc.pklz b/Afni_proc_through_nipype/_subject_id_124/afni_proc/result_afni_proc.pklz new file mode 100644 index 0000000000000000000000000000000000000000..4909d3415d822eb16e26978d70a0e82cf19f4cde GIT binary patch literal 2542 zcmVb!>EBVP~`G&=CcSw%Cx9seal$sRnV}X4r zkS+Sse^8(g{Q>3$P=FB-~&g^_Me_H?Bzdl*Z|I#mg5*~+G zB7Tgc5wbCrhKOQ`CSe#vah6`!PJ8;8CT^VlnBD$!_Ct0n-L$4Sq9pLM*1ff*xhpF> zS$gxL=_DpDiI1gOgu)O8XX)la;@dGZ@?(~6M2R004`-9L^wNFknDE)&wP#M29?Fxz z!}3cPkHEX3?4u~8RuE#}3Q34v;$tc|Mn18^D6p+~5(UY4Vl6z8Et(8pVmr2oW0jPO zj7}B74=0IG?nmp}fB&<3a{aG=PdBjdn9QB@S4vSS7fMQ@R56Qp>*Z>_s7O1topQO9 zF|{d)U?g+%lJP**^(?(24~Z{BDkqRaLp2Po+p*e>PNSvvv-Ddxu#qb#KAG3=$*~v8 zlD4lFSX&0iYNb0l%==&04fglDdbe+?{Wjn@O0XTcL6oKMJaR})g73q=%!9%XEc}Bm3;aS(HV1~9-7D4|vR5qamMeAF&q1~BP4*&U3X5w&{=ft7E5(o zz(JJb62soYY;Ctvs?%g|3C4Tn;%=o}w-K8np5;xY9ssB?K;vAqQpfXrxKjUGicyr~ z62s$@6-JRQ;FnwnaUFMpI6kQecp_krE5$A!9M1)O5^!AO@)Htryh09#g2QekU=ecD z!i*=73qHHh7@jBs<~nDwA`Iq!;o%BLp|`>>g%r;Oj0H>u90?c+p}--+{SSCpc1U`7Vgg$qIPS4;I?yH~_+H)=srW}j0orzizlwNT>!-B8S;6VpMpk7$v zxFSv`G^W9Dg};ke&`*TfJdP3N@kgEjr`*iQwYmP32yzi~n`3tc9S-L-bl#8RKPsx2-(ZeB;aHPN3J0EDu`p^h?wxkD?uqN3z!=U#^V)^xcUrD1r;t2 z!i26GG@P&SoQ9**#vkF!yL-1-|N5&_0F3h03J0#kaYV+eMu?(#)rj!R6{fRrg=3Fn zCww(7IE2P$CE^5$Jvytw1U{afX^R8kqa}7j^Nf$srf71zplhnuA+VmD+pO1$Mc@b5 zA2*)B8Qip*n$go6KoYJjsXzhf+cnMrdIr$NFP}ey^Pe4f-t!mV{C-5g$p!2%1;G|D zl-y^F5lXECZW;T1RfXBUm4j$3=UhiNapVynm>IPrjD5LWRcf}Pl&rg>9b{E(RI^a& zu3}Yps-+r6SM{Ve_LB0D0!?IsS;tM}X8r&g=ovw95^ z_~EXg>IEmnb&(vp$(Z<59(!Q{{@G<<{L^x4eR~U0qV`O&!#`J(i`JzzqmayZipv{Ff6y^Ch$^p%8|R5F zqvot&e|K)$XU~&+&nH{A4zLqMXscYiz4iR@i(hZ$Rg|0h@In>kH-r0wmex7wHmyNl z2RD8@iQ|ygWf`anE1OZ^NTb{)%*O79603JGyYa9Imj`y!SZ9V|OEKr04YOe_#QwQG zD=pTQPEdqp_*};!dL`pIyG7H5v@TCk?%|udd37wTEF=pIHv-6ROWhwd8;_s@?8HIR zci>&VF^>N6&f3~fd_-8O)z4Mm($hs9{%oB;pHHt%|7&`%s-~I@>YEL#=1E^zQwJo=uL^Pn-7##_C(daHH9TdmPlrQb$xMJ-CS(d)>GJ`7VNwKvtTj_ zkK+lPN=dpo325vi7RDQ%2qu>&o9Si<#SX^cv!m$5Pv(WHv@Nl>lwwgD+2xuv->F*F zN@4jkBk`m#hE=f@sSF3*Mi}8~{`m9NTRi?io+Ip#h`sX6v%jR5BTPMZh`t+)MtNtP zM7|xs+0sd`z{wEBKlQ{@+^(?0cH{J=tCI}V%ft_pnC8zt?~j(xR~C)o8}T0pkG5c8 zZrOq7!BKo?E6N|us0A+F*;+n7-Pv+bjF{+l{puF{5s!TaST}o&g7YJnF17czZUQR& z;fI?N%OZ+zEjw%3K&@ z#XE_dqVy=}dGSvD;ki_|-r(eA3!8F7+J42htuqB9XMu^1NF+j@S zFt0TnpI9Xt>v>K(=|`3oGevs(lxo2iyi}FSl9EBCU4@mMVjuZ7W|b%X54n`Qak&)$ E0P(m0@c;k- literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_0xee20d4b7506c6a5d86c5f408e9250c9f.json b/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_0xee20d4b7506c6a5d86c5f408e9250c9f.json new file mode 100644 index 00000000..79ff6304 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_0xee20d4b7506c6a5d86c5f408e9250c9f.json @@ -0,0 +1,14 @@ +[ + [ + "data_dir", + "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" + ], + [ + "function_str", + "def create_stimuli_file(subject, data_dir):\n # create 1D stimuli file :\n import pandas as pd \n from os.path import join as opj\n df_run1 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-01_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run1 = df_run1[[\"onset\", \"gain\", \"loss\"]].T\n df_run2 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-02_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run2 = df_run2[[\"onset\", \"gain\", \"loss\"]].T\n df_run3 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-03_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run3 = df_run3[[\"onset\", \"gain\", \"loss\"]].T\n df_run4 = pd.read_csv(opj(data_dir, \"sub-{}/func/sub-{}_task-MGT_run-04_events.tsv\".format(subject, subject)), sep=\"\\t\")\n df_run4 = df_run4[[\"onset\", \"gain\", \"loss\"]].T\n\n df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_gain.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)]\n df_gain.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)]\n df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64))\n df_loss.loc[0] = [\"{}*{}\".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[1] = [\"{}*{}\".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[2] = [\"{}*{}\".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)]\n df_loss.loc[3] = [\"{}*{}\".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)]\n\n df_gain.to_csv(opj(data_dir, \"sub-{}/func/times+gain.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n df_loss.to_csv(opj(data_dir, \"sub-{}/func/times+loss.1D\".format(subject)), \n sep='\\t', index=False, header=False)\n print(\"Done\")\n" + ], + [ + "subject", + "124" + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_inputs.pklz b/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..e1e3e2a3b8a4a9eec87551ebadd69a12f560dfd5 GIT binary patch literal 590 zcmV-U0|d7+$t9*F6Oy-If2dG_N|18|B~s6D-BdU$afKYw+^kV9Jy1XivjTJX z<13)fn?p7T=ipEPbOGqYxMq|~z#u800P4dE&;?3PYe0q1pj-`EYl?}^p={md6lKO6 z5`vkk@)f1XaKQx~XOjRZ<bFq;P5;Y`z@Tb(L>rfGOG(tH}8j5MEyN0E0X zP}0ZNnEG2q;$4><&hM`*y{Wo>!_jNYzLvHJ`pLS4l|UX?seOrf|Lg8Fohr~JpHqNw zOr&GYDM4zZdj_v+=7$xogV$f;#pMn*wQLwI%g3FtLK+Z%)86p|O3{{vQ5$N=Q ca=gR@RzV@A)9^!_1a0I00YpdhLHGy&0G`qx`v3p{ literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_node.pklz b/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_node.pklz new file mode 100644 index 0000000000000000000000000000000000000000..3536c0803f6a95ba9d6095578e0feb18e91ddef9 GIT binary patch literal 1538 zcmV+d2L1UTiwFo(%z9-4|6guzWMwXJYixQhbZu||tyf!b+cp$#)~30&O?p8)40{mV zhuB*xU*onLilIP|qS%%_v=75lgP^4&i?KwiB;_P6f^9Fw3g~Ux!}gE%EB04*NXd4R zB5OKV2qKX@Jm))yAL)<3T>9gm)eH8?KIbesOu$W80ukfj0w0(c7e1&wyR?Jv{P(=} zYkrhhvw6a440(3VlRz~PrCFRtEYFrn$Usu*g@<|e>EnPil1SkZ9ZHc7LQ+J@vx|iJ zd3N*UbeA@|?L1rTQw79lGSBARJiF`(96JobQV712r`Zx5fQNttx0tV%8B0je4}#D#HQ_u-Rp_U2 zQsjO2WVkw~GEqb%z{z-la8Xu5oJ3;Kp}=A;VG%)T8Yg*nYftnsBhFL^J~0C##b|Sz zIB5uw5XO^Kt7*P#k??3ltV1sZZ#aQ=Bc?iugpOFB^r<%ljn_` z5JlW~B*bC_#IR;kJ_g4EeO6keoP!5SQF%xZTY;twd0S&=NTp9O(IN4vrV2kM_j%1qD>2N zGZ9flRAg4nPbIZ9%H~=~n1fN!$IK7NK4qBUC(VXoky*KE@WM-)Eysd0vk>LRSwIN= z2>fI46w<~NOv1|)xQC3NYa;7a8pmdZXp-1!DSSBn=e_z*ZJ&lbDCt19j9AtyH+!zoki+E>dCK6guNr@7^n6C5+aDTY~WcB_+6 z?o;L9U*bDy`KC0*p$|ccw4jJZB6jD&WpD_Bi{Bbc-s@a?epU8%!s!$3*OEI zZ|A@9j^~(>0`L}M+&1S`m2n>q9!bgvP;G2!UATA5DOd$%!6%)@t2?TJLQ*?+zJP>%E$Tb4^GGp^YOt7_#?H$mZE0TW5!C%@VS8 zcF6YGA=|TrY@Z#nb9Tti{|IULF&i6z4q0C}=5-WnsH|yJ_f@0Oyx;EBQGybpC8|9& zR(OP;Y>f@LkU-$TgTxA{x7n3K=-bG4Vwi@+uSkD!l_Ml_dKbdbw8|=vW9p|Bv{1y z>1*Z^ifL&ytPQLVxrg()xsAQemd%(FsYL0ylP#g(mR5XYW9^vKF2ppZzIrMcmf%WJ zwbBWy+?C>{L#P}m)4q*+h3qrDcp0;_A2Y3ux_+B2;C(D6gMR+xo4@}w&tKUh;WkNw zb=h9AP%ayJ?*OzKey4wbv(fdsbkl#(^)`b};{iNuZ8p4z0V;57k9WAT%w`G0kiE%6 oKLq?Ago8IZU=AF>N3-!&3iFz`yv@J;Iqkdu0#6(4^y&`)0L4@CumAu6 literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_report/report.rst b/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_report/report.rst new file mode 100644 index 00000000..6a4e7db9 --- /dev/null +++ b/Afni_proc_through_nipype/_subject_id_124/create_stimuli/_report/report.rst @@ -0,0 +1,170 @@ +Node: create_stimuli (utility) +============================== + + + Hierarchy : Afni_proc_through_nipype.create_stimuli + Exec ID : create_stimuli.a063 + + +Original Inputs +--------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 124 + + +Execution Inputs +---------------- + + +* data_dir : /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +* function_str : def create_stimuli_file(subject, data_dir): + # create 1D stimuli file : + import pandas as pd + from os.path import join as opj + df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") + df_run1 = df_run1[["onset", "gain", "loss"]].T + df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") + df_run2 = df_run2[["onset", "gain", "loss"]].T + df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") + df_run3 = df_run3[["onset", "gain", "loss"]].T + df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") + df_run4 = df_run4[["onset", "gain", "loss"]].T + + df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] + df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] + df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) + df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] + df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), + sep='\t', index=False, header=False) + df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), + sep='\t', index=False, header=False) + print("Done") + +* subject : 124 + + +Execution Outputs +----------------- + + +* Stimuli : None + + +Runtime info +------------ + + +* duration : 0.012064 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/_subject_id_124/create_stimuli + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/_subject_id_124/create_stimuli/result_create_stimuli.pklz b/Afni_proc_through_nipype/_subject_id_124/create_stimuli/result_create_stimuli.pklz new file mode 100644 index 0000000000000000000000000000000000000000..862c94cbdec119800e2a84a08226a490c97eb31b GIT binary patch literal 2851 zcmV+;3*7V{iwFo(%z9-4|8iw>b!>EBV{&C-bY)+2bZKpMY-uiVYixQhbZu||wOL(r z+r|}D64{cSIChe0CuuSnj?&grDgq=3Q8HB}rbUXzm|rG9TaKi`fWVT3gs)%$l2YPM z`_|6jE$CbSL1y~apVH^P_gC~TNMV}O@7{a%;$m?Y`19i5|M|&6@)v#T znBJ*}IMWG`-`8}6xt@j*heOYE{UDC+O6MaTghMNczl+!Y62FXBqh)o3d~CW-Tzj}M zb9XEC6GtnTU59~bnZYSH_BGFg$#Jy27dm=CoO~BYOMd7Crj6p^LUiL13=CS*UVCcKyV5m-+@G1^_$4C!U z(@^t*$m>4R0;FPy8CoWgF+yKU$ke|4>%ZRo{`>#_J6b}Hp%6~dZ-kss$mWG?UQ}`q zN`;M5UgWk4xd-BAOw2~64>JkZ8}j37y&gxm_@3$Tkk29HQLf6e)M~1YaH|eNJ6NWE2?E_#`Een9eeehFuxXo!34sPdu>bC<^2siiqkvp1e9b?FhL zaJnqBR}}fLgKU8-kOoYaU&uzVM8dA#ghEBI+F4tj@B>bkF&!7 z?ycF;~eyi>CkpAU(y-u`U%bxY){>8Zj1R64tHi?uv5rwi-nS|kr2T+X$mD5 zfJgui5=*g!CdqW6^f?!3euDD^56)7o`8tD-sf|W$tf5BnnaJQFgKcUQSafnQVepwt z@h0s*Gd+q^WKhTuwtNP&kh*3fo;B6eM_hIBa`W8 zG4(mHQfN>((P^Z~*hujy!%SyZi|js=g%N{k(lt$=ZIgh*6!tBq-xf8BO@qZIZJaPh zUV*{XkvkZq*r(=WZN!++e%A|e+Q8l<#S`rH&l`V&op<{|uJrk5=Ky5oNs3*|px8GD zX~Wa}AZ_^QIK_DEr8uxDHoTKT)-Z7}-@^t7_5QpC>2T0^uFXz>O^Y3d<{U?8V{L?H z?U^*#?RGlVrou>rS~Gc+-t4IG^arhS?}Bs%LGt!9siSnub+y`j7DpdnFz^v*SRN8M1iMCnX%;i8I+-y$mAZ)=UayLB8Fg3ZN~6T>SL#0G|Kk zfoC5ceeuUW{vzoh4^!yKfI>+)t3*&rO`s+3cB)l~_9gH713u9@yn=k&bU>M5P|wKW z3q@g57lgd}pueT5qONVKTK<8c7PpG|O{5hz3}FMZ0OGD9b%?T<({_nElA615^wDK? zWIDPP8X&LUX|%plYmK(rE-Ro9w;5C0Ju@v!<2@@Jm=5L#wwHzfu*~0NGg> z3N*_?AjdwKE>f;4-8RkJnPy2!Ov7>zdHfFWoLzr;!J8U*TKBi zCRzIE+iz2WX(5csfrP`u%qOmt{AzU@=oXQ;i$rM6iL75=yeQSqGdKu9 zPD^<%zXjKMiCG0S;q*~|2D<+ZSkb$*1f-?};(U2p0V0UNcb+P$)KEcAck4v+Pj&SB zOijWWq19-^th=jhF|I+W+=B%*x^)GVc)j|xOI$B1oi6zK2u9R;t6Wi=(w-uLs#U5@ zl2J(J8@bsDq|%%-GI-RjNzJ`hMeTO#K;!qrAnT{@uNC3lScL~5(Gdh1cS9uH5W z4=azla=I50T&`5$90xV`Y4S$E(}Lm7r4wOt3okax65RhECY6Rg*R^hknft$hWzs0#Ppk6bX`^iG2zJe9&|dFbN6(a18ccttS0Ib4pGJt%f?2HTEM zH=S^jEpi(id6$yQaeck8$xXJ3YEjJ2e#T}n%nsnH=mJ-O2i=nAqfzn(=(E>&0|a^Y zkzxAeRnH{;TXfS$*d`Crx7>a|84N<-(Or19G^1PaWblI@dc~99+S-DBWa<2MS2OHI zH%-S21Dw3>d8a>nho$1ckN3}(7ZwcE&&H!pdz5`K!+K*J~5Mol5Jv$?#AM#u>;7vRwfM=qrn z(B;g)+8RLQ?W`OID{B{m&(OiaitAt$tU%C#W;*28axq>xI^q;&if~Q7!gcrxDPQ4r z`4+Cpw{RW4g_LjMb@__dubA=`f0*z295ON`Tmg=IK5RIvremPVj;}cbw3=HN zArxq`&~|XzR}|OQSP$g!aF9C!M+Yn4y!`x|mnre{;sg&ziPimt)cvFN%;h2C>i*GM z2Ii8G8K8C^F#{owE``ir9a6YDq;Q>(!qp)QSBETICuHI3kmA)L#s4EDsgLVb1M%=P zRReMLx}<-mYWT?^uU`#6Ipp=L;YUNxRbb%$*fvJKEa5*S#`(&{EsN|_iNEtdvTfZz z4DPRIrj@m)Ss1NnhOl2Ef7+U_rq?Bq82_9EJl}MJ)s>3tAlPIF1|J<%sueKz!vP7aZkQ_zH_uK1c6AVY>; z`Xz5ko_%j?M(?X?KuqxYr$iOh=Zzv);Di`N)@_iT@Q~3Q9TCyR{SSqz;9j{L000Q@ BrOf~U literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/d3.js b/Afni_proc_through_nipype/d3.js new file mode 100644 index 00000000..e1ddb037 --- /dev/null +++ b/Afni_proc_through_nipype/d3.js @@ -0,0 +1,9255 @@ +!function() { + var d3 = { + version: "3.4.8" + }; + if (!Date.now) Date.now = function() { + return +new Date(); + }; + var d3_arraySlice = [].slice, d3_array = function(list) { + return d3_arraySlice.call(list); + }; + var d3_document = document, d3_documentElement = d3_document.documentElement, d3_window = window; + try { + d3_array(d3_documentElement.childNodes)[0].nodeType; + } catch (e) { + d3_array = function(list) { + var i = list.length, array = new Array(i); + while (i--) array[i] = list[i]; + return array; + }; + } + try { + d3_document.createElement("div").style.setProperty("opacity", 0, ""); + } catch (error) { + var d3_element_prototype = d3_window.Element.prototype, d3_element_setAttribute = d3_element_prototype.setAttribute, d3_element_setAttributeNS = d3_element_prototype.setAttributeNS, d3_style_prototype = d3_window.CSSStyleDeclaration.prototype, d3_style_setProperty = d3_style_prototype.setProperty; + d3_element_prototype.setAttribute = function(name, value) { + d3_element_setAttribute.call(this, name, value + ""); + }; + d3_element_prototype.setAttributeNS = function(space, local, value) { + d3_element_setAttributeNS.call(this, space, local, value + ""); + }; + d3_style_prototype.setProperty = function(name, value, priority) { + d3_style_setProperty.call(this, name, value + "", priority); + }; + } + d3.ascending = d3_ascending; + function d3_ascending(a, b) { + return a < b ? -1 : a > b ? 1 : a >= b ? 0 : NaN; + } + d3.descending = function(a, b) { + return b < a ? -1 : b > a ? 1 : b >= a ? 0 : NaN; + }; + d3.min = function(array, f) { + var i = -1, n = array.length, a, b; + if (arguments.length === 1) { + while (++i < n && !((a = array[i]) != null && a <= a)) a = undefined; + while (++i < n) if ((b = array[i]) != null && a > b) a = b; + } else { + while (++i < n && !((a = f.call(array, array[i], i)) != null && a <= a)) a = undefined; + while (++i < n) if ((b = f.call(array, array[i], i)) != null && a > b) a = b; + } + return a; + }; + d3.max = function(array, f) { + var i = -1, n = array.length, a, b; + if (arguments.length === 1) { + while (++i < n && !((a = array[i]) != null && a <= a)) a = undefined; + while (++i < n) if ((b = array[i]) != null && b > a) a = b; + } else { + while (++i < n && !((a = f.call(array, array[i], i)) != null && a <= a)) a = undefined; + while (++i < n) if ((b = f.call(array, array[i], i)) != null && b > a) a = b; + } + return a; + }; + d3.extent = function(array, f) { + var i = -1, n = array.length, a, b, c; + if (arguments.length === 1) { + while (++i < n && !((a = c = array[i]) != null && a <= a)) a = c = undefined; + while (++i < n) if ((b = array[i]) != null) { + if (a > b) a = b; + if (c < b) c = b; + } + } else { + while (++i < n && !((a = c = f.call(array, array[i], i)) != null && a <= a)) a = undefined; + while (++i < n) if ((b = f.call(array, array[i], i)) != null) { + if (a > b) a = b; + if (c < b) c = b; + } + } + return [ a, c ]; + }; + d3.sum = function(array, f) { + var s = 0, n = array.length, a, i = -1; + if (arguments.length === 1) { + while (++i < n) if (!isNaN(a = +array[i])) s += a; + } else { + while (++i < n) if (!isNaN(a = +f.call(array, array[i], i))) s += a; + } + return s; + }; + function d3_number(x) { + return x != null && !isNaN(x); + } + d3.mean = function(array, f) { + var s = 0, n = array.length, a, i = -1, j = n; + if (arguments.length === 1) { + while (++i < n) if (d3_number(a = array[i])) s += a; else --j; + } else { + while (++i < n) if (d3_number(a = f.call(array, array[i], i))) s += a; else --j; + } + return j ? s / j : undefined; + }; + d3.quantile = function(values, p) { + var H = (values.length - 1) * p + 1, h = Math.floor(H), v = +values[h - 1], e = H - h; + return e ? v + e * (values[h] - v) : v; + }; + d3.median = function(array, f) { + if (arguments.length > 1) array = array.map(f); + array = array.filter(d3_number); + return array.length ? d3.quantile(array.sort(d3_ascending), .5) : undefined; + }; + function d3_bisector(compare) { + return { + left: function(a, x, lo, hi) { + if (arguments.length < 3) lo = 0; + if (arguments.length < 4) hi = a.length; + while (lo < hi) { + var mid = lo + hi >>> 1; + if (compare(a[mid], x) < 0) lo = mid + 1; else hi = mid; + } + return lo; + }, + right: function(a, x, lo, hi) { + if (arguments.length < 3) lo = 0; + if (arguments.length < 4) hi = a.length; + while (lo < hi) { + var mid = lo + hi >>> 1; + if (compare(a[mid], x) > 0) hi = mid; else lo = mid + 1; + } + return lo; + } + }; + } + var d3_bisect = d3_bisector(d3_ascending); + d3.bisectLeft = d3_bisect.left; + d3.bisect = d3.bisectRight = d3_bisect.right; + d3.bisector = function(f) { + return d3_bisector(f.length === 1 ? function(d, x) { + return d3_ascending(f(d), x); + } : f); + }; + d3.shuffle = function(array) { + var m = array.length, t, i; + while (m) { + i = Math.random() * m-- | 0; + t = array[m], array[m] = array[i], array[i] = t; + } + return array; + }; + d3.permute = function(array, indexes) { + var i = indexes.length, permutes = new Array(i); + while (i--) permutes[i] = array[indexes[i]]; + return permutes; + }; + d3.pairs = function(array) { + var i = 0, n = array.length - 1, p0, p1 = array[0], pairs = new Array(n < 0 ? 0 : n); + while (i < n) pairs[i] = [ p0 = p1, p1 = array[++i] ]; + return pairs; + }; + d3.zip = function() { + if (!(n = arguments.length)) return []; + for (var i = -1, m = d3.min(arguments, d3_zipLength), zips = new Array(m); ++i < m; ) { + for (var j = -1, n, zip = zips[i] = new Array(n); ++j < n; ) { + zip[j] = arguments[j][i]; + } + } + return zips; + }; + function d3_zipLength(d) { + return d.length; + } + d3.transpose = function(matrix) { + return d3.zip.apply(d3, matrix); + }; + d3.keys = function(map) { + var keys = []; + for (var key in map) keys.push(key); + return keys; + }; + d3.values = function(map) { + var values = []; + for (var key in map) values.push(map[key]); + return values; + }; + d3.entries = function(map) { + var entries = []; + for (var key in map) entries.push({ + key: key, + value: map[key] + }); + return entries; + }; + d3.merge = function(arrays) { + var n = arrays.length, m, i = -1, j = 0, merged, array; + while (++i < n) j += arrays[i].length; + merged = new Array(j); + while (--n >= 0) { + array = arrays[n]; + m = array.length; + while (--m >= 0) { + merged[--j] = array[m]; + } + } + return merged; + }; + var abs = Math.abs; + d3.range = function(start, stop, step) { + if (arguments.length < 3) { + step = 1; + if (arguments.length < 2) { + stop = start; + start = 0; + } + } + if ((stop - start) / step === Infinity) throw new Error("infinite range"); + var range = [], k = d3_range_integerScale(abs(step)), i = -1, j; + start *= k, stop *= k, step *= k; + if (step < 0) while ((j = start + step * ++i) > stop) range.push(j / k); else while ((j = start + step * ++i) < stop) range.push(j / k); + return range; + }; + function d3_range_integerScale(x) { + var k = 1; + while (x * k % 1) k *= 10; + return k; + } + function d3_class(ctor, properties) { + try { + for (var key in properties) { + Object.defineProperty(ctor.prototype, key, { + value: properties[key], + enumerable: false + }); + } + } catch (e) { + ctor.prototype = properties; + } + } + d3.map = function(object) { + var map = new d3_Map(); + if (object instanceof d3_Map) object.forEach(function(key, value) { + map.set(key, value); + }); else for (var key in object) map.set(key, object[key]); + return map; + }; + function d3_Map() {} + d3_class(d3_Map, { + has: d3_map_has, + get: function(key) { + return this[d3_map_prefix + key]; + }, + set: function(key, value) { + return this[d3_map_prefix + key] = value; + }, + remove: d3_map_remove, + keys: d3_map_keys, + values: function() { + var values = []; + this.forEach(function(key, value) { + values.push(value); + }); + return values; + }, + entries: function() { + var entries = []; + this.forEach(function(key, value) { + entries.push({ + key: key, + value: value + }); + }); + return entries; + }, + size: d3_map_size, + empty: d3_map_empty, + forEach: function(f) { + for (var key in this) if (key.charCodeAt(0) === d3_map_prefixCode) f.call(this, key.substring(1), this[key]); + } + }); + var d3_map_prefix = "\x00", d3_map_prefixCode = d3_map_prefix.charCodeAt(0); + function d3_map_has(key) { + return d3_map_prefix + key in this; + } + function d3_map_remove(key) { + key = d3_map_prefix + key; + return key in this && delete this[key]; + } + function d3_map_keys() { + var keys = []; + this.forEach(function(key) { + keys.push(key); + }); + return keys; + } + function d3_map_size() { + var size = 0; + for (var key in this) if (key.charCodeAt(0) === d3_map_prefixCode) ++size; + return size; + } + function d3_map_empty() { + for (var key in this) if (key.charCodeAt(0) === d3_map_prefixCode) return false; + return true; + } + d3.nest = function() { + var nest = {}, keys = [], sortKeys = [], sortValues, rollup; + function map(mapType, array, depth) { + if (depth >= keys.length) return rollup ? rollup.call(nest, array) : sortValues ? array.sort(sortValues) : array; + var i = -1, n = array.length, key = keys[depth++], keyValue, object, setter, valuesByKey = new d3_Map(), values; + while (++i < n) { + if (values = valuesByKey.get(keyValue = key(object = array[i]))) { + values.push(object); + } else { + valuesByKey.set(keyValue, [ object ]); + } + } + if (mapType) { + object = mapType(); + setter = function(keyValue, values) { + object.set(keyValue, map(mapType, values, depth)); + }; + } else { + object = {}; + setter = function(keyValue, values) { + object[keyValue] = map(mapType, values, depth); + }; + } + valuesByKey.forEach(setter); + return object; + } + function entries(map, depth) { + if (depth >= keys.length) return map; + var array = [], sortKey = sortKeys[depth++]; + map.forEach(function(key, keyMap) { + array.push({ + key: key, + values: entries(keyMap, depth) + }); + }); + return sortKey ? array.sort(function(a, b) { + return sortKey(a.key, b.key); + }) : array; + } + nest.map = function(array, mapType) { + return map(mapType, array, 0); + }; + nest.entries = function(array) { + return entries(map(d3.map, array, 0), 0); + }; + nest.key = function(d) { + keys.push(d); + return nest; + }; + nest.sortKeys = function(order) { + sortKeys[keys.length - 1] = order; + return nest; + }; + nest.sortValues = function(order) { + sortValues = order; + return nest; + }; + nest.rollup = function(f) { + rollup = f; + return nest; + }; + return nest; + }; + d3.set = function(array) { + var set = new d3_Set(); + if (array) for (var i = 0, n = array.length; i < n; ++i) set.add(array[i]); + return set; + }; + function d3_Set() {} + d3_class(d3_Set, { + has: d3_map_has, + add: function(value) { + this[d3_map_prefix + value] = true; + return value; + }, + remove: function(value) { + value = d3_map_prefix + value; + return value in this && delete this[value]; + }, + values: d3_map_keys, + size: d3_map_size, + empty: d3_map_empty, + forEach: function(f) { + for (var value in this) if (value.charCodeAt(0) === d3_map_prefixCode) f.call(this, value.substring(1)); + } + }); + d3.behavior = {}; + d3.rebind = function(target, source) { + var i = 1, n = arguments.length, method; + while (++i < n) target[method = arguments[i]] = d3_rebind(target, source, source[method]); + return target; + }; + function d3_rebind(target, source, method) { + return function() { + var value = method.apply(source, arguments); + return value === source ? target : value; + }; + } + function d3_vendorSymbol(object, name) { + if (name in object) return name; + name = name.charAt(0).toUpperCase() + name.substring(1); + for (var i = 0, n = d3_vendorPrefixes.length; i < n; ++i) { + var prefixName = d3_vendorPrefixes[i] + name; + if (prefixName in object) return prefixName; + } + } + var d3_vendorPrefixes = [ "webkit", "ms", "moz", "Moz", "o", "O" ]; + function d3_noop() {} + d3.dispatch = function() { + var dispatch = new d3_dispatch(), i = -1, n = arguments.length; + while (++i < n) dispatch[arguments[i]] = d3_dispatch_event(dispatch); + return dispatch; + }; + function d3_dispatch() {} + d3_dispatch.prototype.on = function(type, listener) { + var i = type.indexOf("."), name = ""; + if (i >= 0) { + name = type.substring(i + 1); + type = type.substring(0, i); + } + if (type) return arguments.length < 2 ? this[type].on(name) : this[type].on(name, listener); + if (arguments.length === 2) { + if (listener == null) for (type in this) { + if (this.hasOwnProperty(type)) this[type].on(name, null); + } + return this; + } + }; + function d3_dispatch_event(dispatch) { + var listeners = [], listenerByName = new d3_Map(); + function event() { + var z = listeners, i = -1, n = z.length, l; + while (++i < n) if (l = z[i].on) l.apply(this, arguments); + return dispatch; + } + event.on = function(name, listener) { + var l = listenerByName.get(name), i; + if (arguments.length < 2) return l && l.on; + if (l) { + l.on = null; + listeners = listeners.slice(0, i = listeners.indexOf(l)).concat(listeners.slice(i + 1)); + listenerByName.remove(name); + } + if (listener) listeners.push(listenerByName.set(name, { + on: listener + })); + return dispatch; + }; + return event; + } + d3.event = null; + function d3_eventPreventDefault() { + d3.event.preventDefault(); + } + function d3_eventSource() { + var e = d3.event, s; + while (s = e.sourceEvent) e = s; + return e; + } + function d3_eventDispatch(target) { + var dispatch = new d3_dispatch(), i = 0, n = arguments.length; + while (++i < n) dispatch[arguments[i]] = d3_dispatch_event(dispatch); + dispatch.of = function(thiz, argumentz) { + return function(e1) { + try { + var e0 = e1.sourceEvent = d3.event; + e1.target = target; + d3.event = e1; + dispatch[e1.type].apply(thiz, argumentz); + } finally { + d3.event = e0; + } + }; + }; + return dispatch; + } + d3.requote = function(s) { + return s.replace(d3_requote_re, "\\$&"); + }; + var d3_requote_re = /[\\\^\$\*\+\?\|\[\]\(\)\.\{\}]/g; + var d3_subclass = {}.__proto__ ? function(object, prototype) { + object.__proto__ = prototype; + } : function(object, prototype) { + for (var property in prototype) object[property] = prototype[property]; + }; + function d3_selection(groups) { + d3_subclass(groups, d3_selectionPrototype); + return groups; + } + var d3_select = function(s, n) { + return n.querySelector(s); + }, d3_selectAll = function(s, n) { + return n.querySelectorAll(s); + }, d3_selectMatcher = d3_documentElement[d3_vendorSymbol(d3_documentElement, "matchesSelector")], d3_selectMatches = function(n, s) { + return d3_selectMatcher.call(n, s); + }; + if (typeof Sizzle === "function") { + d3_select = function(s, n) { + return Sizzle(s, n)[0] || null; + }; + d3_selectAll = Sizzle; + d3_selectMatches = Sizzle.matchesSelector; + } + d3.selection = function() { + return d3_selectionRoot; + }; + var d3_selectionPrototype = d3.selection.prototype = []; + d3_selectionPrototype.select = function(selector) { + var subgroups = [], subgroup, subnode, group, node; + selector = d3_selection_selector(selector); + for (var j = -1, m = this.length; ++j < m; ) { + subgroups.push(subgroup = []); + subgroup.parentNode = (group = this[j]).parentNode; + for (var i = -1, n = group.length; ++i < n; ) { + if (node = group[i]) { + subgroup.push(subnode = selector.call(node, node.__data__, i, j)); + if (subnode && "__data__" in node) subnode.__data__ = node.__data__; + } else { + subgroup.push(null); + } + } + } + return d3_selection(subgroups); + }; + function d3_selection_selector(selector) { + return typeof selector === "function" ? selector : function() { + return d3_select(selector, this); + }; + } + d3_selectionPrototype.selectAll = function(selector) { + var subgroups = [], subgroup, node; + selector = d3_selection_selectorAll(selector); + for (var j = -1, m = this.length; ++j < m; ) { + for (var group = this[j], i = -1, n = group.length; ++i < n; ) { + if (node = group[i]) { + subgroups.push(subgroup = d3_array(selector.call(node, node.__data__, i, j))); + subgroup.parentNode = node; + } + } + } + return d3_selection(subgroups); + }; + function d3_selection_selectorAll(selector) { + return typeof selector === "function" ? selector : function() { + return d3_selectAll(selector, this); + }; + } + var d3_nsPrefix = { + svg: "http://www.w3.org/2000/svg", + xhtml: "http://www.w3.org/1999/xhtml", + xlink: "http://www.w3.org/1999/xlink", + xml: "http://www.w3.org/XML/1998/namespace", + xmlns: "http://www.w3.org/2000/xmlns/" + }; + d3.ns = { + prefix: d3_nsPrefix, + qualify: function(name) { + var i = name.indexOf(":"), prefix = name; + if (i >= 0) { + prefix = name.substring(0, i); + name = name.substring(i + 1); + } + return d3_nsPrefix.hasOwnProperty(prefix) ? { + space: d3_nsPrefix[prefix], + local: name + } : name; + } + }; + d3_selectionPrototype.attr = function(name, value) { + if (arguments.length < 2) { + if (typeof name === "string") { + var node = this.node(); + name = d3.ns.qualify(name); + return name.local ? node.getAttributeNS(name.space, name.local) : node.getAttribute(name); + } + for (value in name) this.each(d3_selection_attr(value, name[value])); + return this; + } + return this.each(d3_selection_attr(name, value)); + }; + function d3_selection_attr(name, value) { + name = d3.ns.qualify(name); + function attrNull() { + this.removeAttribute(name); + } + function attrNullNS() { + this.removeAttributeNS(name.space, name.local); + } + function attrConstant() { + this.setAttribute(name, value); + } + function attrConstantNS() { + this.setAttributeNS(name.space, name.local, value); + } + function attrFunction() { + var x = value.apply(this, arguments); + if (x == null) this.removeAttribute(name); else this.setAttribute(name, x); + } + function attrFunctionNS() { + var x = value.apply(this, arguments); + if (x == null) this.removeAttributeNS(name.space, name.local); else this.setAttributeNS(name.space, name.local, x); + } + return value == null ? name.local ? attrNullNS : attrNull : typeof value === "function" ? name.local ? attrFunctionNS : attrFunction : name.local ? attrConstantNS : attrConstant; + } + function d3_collapse(s) { + return s.trim().replace(/\s+/g, " "); + } + d3_selectionPrototype.classed = function(name, value) { + if (arguments.length < 2) { + if (typeof name === "string") { + var node = this.node(), n = (name = d3_selection_classes(name)).length, i = -1; + if (value = node.classList) { + while (++i < n) if (!value.contains(name[i])) return false; + } else { + value = node.getAttribute("class"); + while (++i < n) if (!d3_selection_classedRe(name[i]).test(value)) return false; + } + return true; + } + for (value in name) this.each(d3_selection_classed(value, name[value])); + return this; + } + return this.each(d3_selection_classed(name, value)); + }; + function d3_selection_classedRe(name) { + return new RegExp("(?:^|\\s+)" + d3.requote(name) + "(?:\\s+|$)", "g"); + } + function d3_selection_classes(name) { + return name.trim().split(/^|\s+/); + } + function d3_selection_classed(name, value) { + name = d3_selection_classes(name).map(d3_selection_classedName); + var n = name.length; + function classedConstant() { + var i = -1; + while (++i < n) name[i](this, value); + } + function classedFunction() { + var i = -1, x = value.apply(this, arguments); + while (++i < n) name[i](this, x); + } + return typeof value === "function" ? classedFunction : classedConstant; + } + function d3_selection_classedName(name) { + var re = d3_selection_classedRe(name); + return function(node, value) { + if (c = node.classList) return value ? c.add(name) : c.remove(name); + var c = node.getAttribute("class") || ""; + if (value) { + re.lastIndex = 0; + if (!re.test(c)) node.setAttribute("class", d3_collapse(c + " " + name)); + } else { + node.setAttribute("class", d3_collapse(c.replace(re, " "))); + } + }; + } + d3_selectionPrototype.style = function(name, value, priority) { + var n = arguments.length; + if (n < 3) { + if (typeof name !== "string") { + if (n < 2) value = ""; + for (priority in name) this.each(d3_selection_style(priority, name[priority], value)); + return this; + } + if (n < 2) return d3_window.getComputedStyle(this.node(), null).getPropertyValue(name); + priority = ""; + } + return this.each(d3_selection_style(name, value, priority)); + }; + function d3_selection_style(name, value, priority) { + function styleNull() { + this.style.removeProperty(name); + } + function styleConstant() { + this.style.setProperty(name, value, priority); + } + function styleFunction() { + var x = value.apply(this, arguments); + if (x == null) this.style.removeProperty(name); else this.style.setProperty(name, x, priority); + } + return value == null ? styleNull : typeof value === "function" ? styleFunction : styleConstant; + } + d3_selectionPrototype.property = function(name, value) { + if (arguments.length < 2) { + if (typeof name === "string") return this.node()[name]; + for (value in name) this.each(d3_selection_property(value, name[value])); + return this; + } + return this.each(d3_selection_property(name, value)); + }; + function d3_selection_property(name, value) { + function propertyNull() { + delete this[name]; + } + function propertyConstant() { + this[name] = value; + } + function propertyFunction() { + var x = value.apply(this, arguments); + if (x == null) delete this[name]; else this[name] = x; + } + return value == null ? propertyNull : typeof value === "function" ? propertyFunction : propertyConstant; + } + d3_selectionPrototype.text = function(value) { + return arguments.length ? this.each(typeof value === "function" ? function() { + var v = value.apply(this, arguments); + this.textContent = v == null ? "" : v; + } : value == null ? function() { + this.textContent = ""; + } : function() { + this.textContent = value; + }) : this.node().textContent; + }; + d3_selectionPrototype.html = function(value) { + return arguments.length ? this.each(typeof value === "function" ? function() { + var v = value.apply(this, arguments); + this.innerHTML = v == null ? "" : v; + } : value == null ? function() { + this.innerHTML = ""; + } : function() { + this.innerHTML = value; + }) : this.node().innerHTML; + }; + d3_selectionPrototype.append = function(name) { + name = d3_selection_creator(name); + return this.select(function() { + return this.appendChild(name.apply(this, arguments)); + }); + }; + function d3_selection_creator(name) { + return typeof name === "function" ? name : (name = d3.ns.qualify(name)).local ? function() { + return this.ownerDocument.createElementNS(name.space, name.local); + } : function() { + return this.ownerDocument.createElementNS(this.namespaceURI, name); + }; + } + d3_selectionPrototype.insert = function(name, before) { + name = d3_selection_creator(name); + before = d3_selection_selector(before); + return this.select(function() { + return this.insertBefore(name.apply(this, arguments), before.apply(this, arguments) || null); + }); + }; + d3_selectionPrototype.remove = function() { + return this.each(function() { + var parent = this.parentNode; + if (parent) parent.removeChild(this); + }); + }; + d3_selectionPrototype.data = function(value, key) { + var i = -1, n = this.length, group, node; + if (!arguments.length) { + value = new Array(n = (group = this[0]).length); + while (++i < n) { + if (node = group[i]) { + value[i] = node.__data__; + } + } + return value; + } + function bind(group, groupData) { + var i, n = group.length, m = groupData.length, n0 = Math.min(n, m), updateNodes = new Array(m), enterNodes = new Array(m), exitNodes = new Array(n), node, nodeData; + if (key) { + var nodeByKeyValue = new d3_Map(), dataByKeyValue = new d3_Map(), keyValues = [], keyValue; + for (i = -1; ++i < n; ) { + keyValue = key.call(node = group[i], node.__data__, i); + if (nodeByKeyValue.has(keyValue)) { + exitNodes[i] = node; + } else { + nodeByKeyValue.set(keyValue, node); + } + keyValues.push(keyValue); + } + for (i = -1; ++i < m; ) { + keyValue = key.call(groupData, nodeData = groupData[i], i); + if (node = nodeByKeyValue.get(keyValue)) { + updateNodes[i] = node; + node.__data__ = nodeData; + } else if (!dataByKeyValue.has(keyValue)) { + enterNodes[i] = d3_selection_dataNode(nodeData); + } + dataByKeyValue.set(keyValue, nodeData); + nodeByKeyValue.remove(keyValue); + } + for (i = -1; ++i < n; ) { + if (nodeByKeyValue.has(keyValues[i])) { + exitNodes[i] = group[i]; + } + } + } else { + for (i = -1; ++i < n0; ) { + node = group[i]; + nodeData = groupData[i]; + if (node) { + node.__data__ = nodeData; + updateNodes[i] = node; + } else { + enterNodes[i] = d3_selection_dataNode(nodeData); + } + } + for (;i < m; ++i) { + enterNodes[i] = d3_selection_dataNode(groupData[i]); + } + for (;i < n; ++i) { + exitNodes[i] = group[i]; + } + } + enterNodes.update = updateNodes; + enterNodes.parentNode = updateNodes.parentNode = exitNodes.parentNode = group.parentNode; + enter.push(enterNodes); + update.push(updateNodes); + exit.push(exitNodes); + } + var enter = d3_selection_enter([]), update = d3_selection([]), exit = d3_selection([]); + if (typeof value === "function") { + while (++i < n) { + bind(group = this[i], value.call(group, group.parentNode.__data__, i)); + } + } else { + while (++i < n) { + bind(group = this[i], value); + } + } + update.enter = function() { + return enter; + }; + update.exit = function() { + return exit; + }; + return update; + }; + function d3_selection_dataNode(data) { + return { + __data__: data + }; + } + d3_selectionPrototype.datum = function(value) { + return arguments.length ? this.property("__data__", value) : this.property("__data__"); + }; + d3_selectionPrototype.filter = function(filter) { + var subgroups = [], subgroup, group, node; + if (typeof filter !== "function") filter = d3_selection_filter(filter); + for (var j = 0, m = this.length; j < m; j++) { + subgroups.push(subgroup = []); + subgroup.parentNode = (group = this[j]).parentNode; + for (var i = 0, n = group.length; i < n; i++) { + if ((node = group[i]) && filter.call(node, node.__data__, i, j)) { + subgroup.push(node); + } + } + } + return d3_selection(subgroups); + }; + function d3_selection_filter(selector) { + return function() { + return d3_selectMatches(this, selector); + }; + } + d3_selectionPrototype.order = function() { + for (var j = -1, m = this.length; ++j < m; ) { + for (var group = this[j], i = group.length - 1, next = group[i], node; --i >= 0; ) { + if (node = group[i]) { + if (next && next !== node.nextSibling) next.parentNode.insertBefore(node, next); + next = node; + } + } + } + return this; + }; + d3_selectionPrototype.sort = function(comparator) { + comparator = d3_selection_sortComparator.apply(this, arguments); + for (var j = -1, m = this.length; ++j < m; ) this[j].sort(comparator); + return this.order(); + }; + function d3_selection_sortComparator(comparator) { + if (!arguments.length) comparator = d3_ascending; + return function(a, b) { + return a && b ? comparator(a.__data__, b.__data__) : !a - !b; + }; + } + d3_selectionPrototype.each = function(callback) { + return d3_selection_each(this, function(node, i, j) { + callback.call(node, node.__data__, i, j); + }); + }; + function d3_selection_each(groups, callback) { + for (var j = 0, m = groups.length; j < m; j++) { + for (var group = groups[j], i = 0, n = group.length, node; i < n; i++) { + if (node = group[i]) callback(node, i, j); + } + } + return groups; + } + d3_selectionPrototype.call = function(callback) { + var args = d3_array(arguments); + callback.apply(args[0] = this, args); + return this; + }; + d3_selectionPrototype.empty = function() { + return !this.node(); + }; + d3_selectionPrototype.node = function() { + for (var j = 0, m = this.length; j < m; j++) { + for (var group = this[j], i = 0, n = group.length; i < n; i++) { + var node = group[i]; + if (node) return node; + } + } + return null; + }; + d3_selectionPrototype.size = function() { + var n = 0; + this.each(function() { + ++n; + }); + return n; + }; + function d3_selection_enter(selection) { + d3_subclass(selection, d3_selection_enterPrototype); + return selection; + } + var d3_selection_enterPrototype = []; + d3.selection.enter = d3_selection_enter; + d3.selection.enter.prototype = d3_selection_enterPrototype; + d3_selection_enterPrototype.append = d3_selectionPrototype.append; + d3_selection_enterPrototype.empty = d3_selectionPrototype.empty; + d3_selection_enterPrototype.node = d3_selectionPrototype.node; + d3_selection_enterPrototype.call = d3_selectionPrototype.call; + d3_selection_enterPrototype.size = d3_selectionPrototype.size; + d3_selection_enterPrototype.select = function(selector) { + var subgroups = [], subgroup, subnode, upgroup, group, node; + for (var j = -1, m = this.length; ++j < m; ) { + upgroup = (group = this[j]).update; + subgroups.push(subgroup = []); + subgroup.parentNode = group.parentNode; + for (var i = -1, n = group.length; ++i < n; ) { + if (node = group[i]) { + subgroup.push(upgroup[i] = subnode = selector.call(group.parentNode, node.__data__, i, j)); + subnode.__data__ = node.__data__; + } else { + subgroup.push(null); + } + } + } + return d3_selection(subgroups); + }; + d3_selection_enterPrototype.insert = function(name, before) { + if (arguments.length < 2) before = d3_selection_enterInsertBefore(this); + return d3_selectionPrototype.insert.call(this, name, before); + }; + function d3_selection_enterInsertBefore(enter) { + var i0, j0; + return function(d, i, j) { + var group = enter[j].update, n = group.length, node; + if (j != j0) j0 = j, i0 = 0; + if (i >= i0) i0 = i + 1; + while (!(node = group[i0]) && ++i0 < n) ; + return node; + }; + } + d3_selectionPrototype.transition = function() { + var id = d3_transitionInheritId || ++d3_transitionId, subgroups = [], subgroup, node, transition = d3_transitionInherit || { + time: Date.now(), + ease: d3_ease_cubicInOut, + delay: 0, + duration: 250 + }; + for (var j = -1, m = this.length; ++j < m; ) { + subgroups.push(subgroup = []); + for (var group = this[j], i = -1, n = group.length; ++i < n; ) { + if (node = group[i]) d3_transitionNode(node, i, id, transition); + subgroup.push(node); + } + } + return d3_transition(subgroups, id); + }; + d3_selectionPrototype.interrupt = function() { + return this.each(d3_selection_interrupt); + }; + function d3_selection_interrupt() { + var lock = this.__transition__; + if (lock) ++lock.active; + } + d3.select = function(node) { + var group = [ typeof node === "string" ? d3_select(node, d3_document) : node ]; + group.parentNode = d3_documentElement; + return d3_selection([ group ]); + }; + d3.selectAll = function(nodes) { + var group = d3_array(typeof nodes === "string" ? d3_selectAll(nodes, d3_document) : nodes); + group.parentNode = d3_documentElement; + return d3_selection([ group ]); + }; + var d3_selectionRoot = d3.select(d3_documentElement); + d3_selectionPrototype.on = function(type, listener, capture) { + var n = arguments.length; + if (n < 3) { + if (typeof type !== "string") { + if (n < 2) listener = false; + for (capture in type) this.each(d3_selection_on(capture, type[capture], listener)); + return this; + } + if (n < 2) return (n = this.node()["__on" + type]) && n._; + capture = false; + } + return this.each(d3_selection_on(type, listener, capture)); + }; + function d3_selection_on(type, listener, capture) { + var name = "__on" + type, i = type.indexOf("."), wrap = d3_selection_onListener; + if (i > 0) type = type.substring(0, i); + var filter = d3_selection_onFilters.get(type); + if (filter) type = filter, wrap = d3_selection_onFilter; + function onRemove() { + var l = this[name]; + if (l) { + this.removeEventListener(type, l, l.$); + delete this[name]; + } + } + function onAdd() { + var l = wrap(listener, d3_array(arguments)); + onRemove.call(this); + this.addEventListener(type, this[name] = l, l.$ = capture); + l._ = listener; + } + function removeAll() { + var re = new RegExp("^__on([^.]+)" + d3.requote(type) + "$"), match; + for (var name in this) { + if (match = name.match(re)) { + var l = this[name]; + this.removeEventListener(match[1], l, l.$); + delete this[name]; + } + } + } + return i ? listener ? onAdd : onRemove : listener ? d3_noop : removeAll; + } + var d3_selection_onFilters = d3.map({ + mouseenter: "mouseover", + mouseleave: "mouseout" + }); + d3_selection_onFilters.forEach(function(k) { + if ("on" + k in d3_document) d3_selection_onFilters.remove(k); + }); + function d3_selection_onListener(listener, argumentz) { + return function(e) { + var o = d3.event; + d3.event = e; + argumentz[0] = this.__data__; + try { + listener.apply(this, argumentz); + } finally { + d3.event = o; + } + }; + } + function d3_selection_onFilter(listener, argumentz) { + var l = d3_selection_onListener(listener, argumentz); + return function(e) { + var target = this, related = e.relatedTarget; + if (!related || related !== target && !(related.compareDocumentPosition(target) & 8)) { + l.call(target, e); + } + }; + } + var d3_event_dragSelect = "onselectstart" in d3_document ? null : d3_vendorSymbol(d3_documentElement.style, "userSelect"), d3_event_dragId = 0; + function d3_event_dragSuppress() { + var name = ".dragsuppress-" + ++d3_event_dragId, click = "click" + name, w = d3.select(d3_window).on("touchmove" + name, d3_eventPreventDefault).on("dragstart" + name, d3_eventPreventDefault).on("selectstart" + name, d3_eventPreventDefault); + if (d3_event_dragSelect) { + var style = d3_documentElement.style, select = style[d3_event_dragSelect]; + style[d3_event_dragSelect] = "none"; + } + return function(suppressClick) { + w.on(name, null); + if (d3_event_dragSelect) style[d3_event_dragSelect] = select; + if (suppressClick) { + function off() { + w.on(click, null); + } + w.on(click, function() { + d3_eventPreventDefault(); + off(); + }, true); + setTimeout(off, 0); + } + }; + } + d3.mouse = function(container) { + return d3_mousePoint(container, d3_eventSource()); + }; + function d3_mousePoint(container, e) { + if (e.changedTouches) e = e.changedTouches[0]; + var svg = container.ownerSVGElement || container; + if (svg.createSVGPoint) { + var point = svg.createSVGPoint(); + point.x = e.clientX, point.y = e.clientY; + point = point.matrixTransform(container.getScreenCTM().inverse()); + return [ point.x, point.y ]; + } + var rect = container.getBoundingClientRect(); + return [ e.clientX - rect.left - container.clientLeft, e.clientY - rect.top - container.clientTop ]; + } + d3.touches = function(container, touches) { + if (arguments.length < 2) touches = d3_eventSource().touches; + return touches ? d3_array(touches).map(function(touch) { + var point = d3_mousePoint(container, touch); + point.identifier = touch.identifier; + return point; + }) : []; + }; + d3.behavior.drag = function() { + var event = d3_eventDispatch(drag, "drag", "dragstart", "dragend"), origin = null, mousedown = dragstart(d3_noop, d3.mouse, d3_behavior_dragMouseSubject, "mousemove", "mouseup"), touchstart = dragstart(d3_behavior_dragTouchId, d3.touch, d3_behavior_dragTouchSubject, "touchmove", "touchend"); + function drag() { + this.on("mousedown.drag", mousedown).on("touchstart.drag", touchstart); + } + function dragstart(id, position, subject, move, end) { + return function() { + var that = this, target = d3.event.target, parent = that.parentNode, dispatch = event.of(that, arguments), dragged = 0, dragId = id(), dragName = ".drag" + (dragId == null ? "" : "-" + dragId), dragOffset, dragSubject = d3.select(subject()).on(move + dragName, moved).on(end + dragName, ended), dragRestore = d3_event_dragSuppress(), position0 = position(parent, dragId); + if (origin) { + dragOffset = origin.apply(that, arguments); + dragOffset = [ dragOffset.x - position0[0], dragOffset.y - position0[1] ]; + } else { + dragOffset = [ 0, 0 ]; + } + dispatch({ + type: "dragstart" + }); + function moved() { + var position1 = position(parent, dragId), dx, dy; + if (!position1) return; + dx = position1[0] - position0[0]; + dy = position1[1] - position0[1]; + dragged |= dx | dy; + position0 = position1; + dispatch({ + type: "drag", + x: position1[0] + dragOffset[0], + y: position1[1] + dragOffset[1], + dx: dx, + dy: dy + }); + } + function ended() { + if (!position(parent, dragId)) return; + dragSubject.on(move + dragName, null).on(end + dragName, null); + dragRestore(dragged && d3.event.target === target); + dispatch({ + type: "dragend" + }); + } + }; + } + drag.origin = function(x) { + if (!arguments.length) return origin; + origin = x; + return drag; + }; + return d3.rebind(drag, event, "on"); + }; + function d3_behavior_dragTouchId() { + return d3.event.changedTouches[0].identifier; + } + function d3_behavior_dragTouchSubject() { + return d3.event.target; + } + function d3_behavior_dragMouseSubject() { + return d3_window; + } + var π = Math.PI, τ = 2 * π, halfπ = π / 2, ε = 1e-6, ε2 = ε * ε, d3_radians = π / 180, d3_degrees = 180 / π; + function d3_sgn(x) { + return x > 0 ? 1 : x < 0 ? -1 : 0; + } + function d3_cross2d(a, b, c) { + return (b[0] - a[0]) * (c[1] - a[1]) - (b[1] - a[1]) * (c[0] - a[0]); + } + function d3_acos(x) { + return x > 1 ? 0 : x < -1 ? π : Math.acos(x); + } + function d3_asin(x) { + return x > 1 ? halfπ : x < -1 ? -halfπ : Math.asin(x); + } + function d3_sinh(x) { + return ((x = Math.exp(x)) - 1 / x) / 2; + } + function d3_cosh(x) { + return ((x = Math.exp(x)) + 1 / x) / 2; + } + function d3_tanh(x) { + return ((x = Math.exp(2 * x)) - 1) / (x + 1); + } + function d3_haversin(x) { + return (x = Math.sin(x / 2)) * x; + } + var ρ = Math.SQRT2, ρ2 = 2, ρ4 = 4; + d3.interpolateZoom = function(p0, p1) { + var ux0 = p0[0], uy0 = p0[1], w0 = p0[2], ux1 = p1[0], uy1 = p1[1], w1 = p1[2]; + var dx = ux1 - ux0, dy = uy1 - uy0, d2 = dx * dx + dy * dy, d1 = Math.sqrt(d2), b0 = (w1 * w1 - w0 * w0 + ρ4 * d2) / (2 * w0 * ρ2 * d1), b1 = (w1 * w1 - w0 * w0 - ρ4 * d2) / (2 * w1 * ρ2 * d1), r0 = Math.log(Math.sqrt(b0 * b0 + 1) - b0), r1 = Math.log(Math.sqrt(b1 * b1 + 1) - b1), dr = r1 - r0, S = (dr || Math.log(w1 / w0)) / ρ; + function interpolate(t) { + var s = t * S; + if (dr) { + var coshr0 = d3_cosh(r0), u = w0 / (ρ2 * d1) * (coshr0 * d3_tanh(ρ * s + r0) - d3_sinh(r0)); + return [ ux0 + u * dx, uy0 + u * dy, w0 * coshr0 / d3_cosh(ρ * s + r0) ]; + } + return [ ux0 + t * dx, uy0 + t * dy, w0 * Math.exp(ρ * s) ]; + } + interpolate.duration = S * 1e3; + return interpolate; + }; + d3.behavior.zoom = function() { + var view = { + x: 0, + y: 0, + k: 1 + }, translate0, center, size = [ 960, 500 ], scaleExtent = d3_behavior_zoomInfinity, mousedown = "mousedown.zoom", mousemove = "mousemove.zoom", mouseup = "mouseup.zoom", mousewheelTimer, touchstart = "touchstart.zoom", touchtime, event = d3_eventDispatch(zoom, "zoomstart", "zoom", "zoomend"), x0, x1, y0, y1; + function zoom(g) { + g.on(mousedown, mousedowned).on(d3_behavior_zoomWheel + ".zoom", mousewheeled).on(mousemove, mousewheelreset).on("dblclick.zoom", dblclicked).on(touchstart, touchstarted); + } + zoom.event = function(g) { + g.each(function() { + var dispatch = event.of(this, arguments), view1 = view; + if (d3_transitionInheritId) { + d3.select(this).transition().each("start.zoom", function() { + view = this.__chart__ || { + x: 0, + y: 0, + k: 1 + }; + zoomstarted(dispatch); + }).tween("zoom:zoom", function() { + var dx = size[0], dy = size[1], cx = dx / 2, cy = dy / 2, i = d3.interpolateZoom([ (cx - view.x) / view.k, (cy - view.y) / view.k, dx / view.k ], [ (cx - view1.x) / view1.k, (cy - view1.y) / view1.k, dx / view1.k ]); + return function(t) { + var l = i(t), k = dx / l[2]; + this.__chart__ = view = { + x: cx - l[0] * k, + y: cy - l[1] * k, + k: k + }; + zoomed(dispatch); + }; + }).each("end.zoom", function() { + zoomended(dispatch); + }); + } else { + this.__chart__ = view; + zoomstarted(dispatch); + zoomed(dispatch); + zoomended(dispatch); + } + }); + }; + zoom.translate = function(_) { + if (!arguments.length) return [ view.x, view.y ]; + view = { + x: +_[0], + y: +_[1], + k: view.k + }; + rescale(); + return zoom; + }; + zoom.scale = function(_) { + if (!arguments.length) return view.k; + view = { + x: view.x, + y: view.y, + k: +_ + }; + rescale(); + return zoom; + }; + zoom.scaleExtent = function(_) { + if (!arguments.length) return scaleExtent; + scaleExtent = _ == null ? d3_behavior_zoomInfinity : [ +_[0], +_[1] ]; + return zoom; + }; + zoom.center = function(_) { + if (!arguments.length) return center; + center = _ && [ +_[0], +_[1] ]; + return zoom; + }; + zoom.size = function(_) { + if (!arguments.length) return size; + size = _ && [ +_[0], +_[1] ]; + return zoom; + }; + zoom.x = function(z) { + if (!arguments.length) return x1; + x1 = z; + x0 = z.copy(); + view = { + x: 0, + y: 0, + k: 1 + }; + return zoom; + }; + zoom.y = function(z) { + if (!arguments.length) return y1; + y1 = z; + y0 = z.copy(); + view = { + x: 0, + y: 0, + k: 1 + }; + return zoom; + }; + function location(p) { + return [ (p[0] - view.x) / view.k, (p[1] - view.y) / view.k ]; + } + function point(l) { + return [ l[0] * view.k + view.x, l[1] * view.k + view.y ]; + } + function scaleTo(s) { + view.k = Math.max(scaleExtent[0], Math.min(scaleExtent[1], s)); + } + function translateTo(p, l) { + l = point(l); + view.x += p[0] - l[0]; + view.y += p[1] - l[1]; + } + function rescale() { + if (x1) x1.domain(x0.range().map(function(x) { + return (x - view.x) / view.k; + }).map(x0.invert)); + if (y1) y1.domain(y0.range().map(function(y) { + return (y - view.y) / view.k; + }).map(y0.invert)); + } + function zoomstarted(dispatch) { + dispatch({ + type: "zoomstart" + }); + } + function zoomed(dispatch) { + rescale(); + dispatch({ + type: "zoom", + scale: view.k, + translate: [ view.x, view.y ] + }); + } + function zoomended(dispatch) { + dispatch({ + type: "zoomend" + }); + } + function mousedowned() { + var that = this, target = d3.event.target, dispatch = event.of(that, arguments), dragged = 0, subject = d3.select(d3_window).on(mousemove, moved).on(mouseup, ended), location0 = location(d3.mouse(that)), dragRestore = d3_event_dragSuppress(); + d3_selection_interrupt.call(that); + zoomstarted(dispatch); + function moved() { + dragged = 1; + translateTo(d3.mouse(that), location0); + zoomed(dispatch); + } + function ended() { + subject.on(mousemove, d3_window === that ? mousewheelreset : null).on(mouseup, null); + dragRestore(dragged && d3.event.target === target); + zoomended(dispatch); + } + } + function touchstarted() { + var that = this, dispatch = event.of(that, arguments), locations0 = {}, distance0 = 0, scale0, zoomName = ".zoom-" + d3.event.changedTouches[0].identifier, touchmove = "touchmove" + zoomName, touchend = "touchend" + zoomName, targets = [], subject = d3.select(that).on(mousedown, null).on(touchstart, started), dragRestore = d3_event_dragSuppress(); + d3_selection_interrupt.call(that); + started(); + zoomstarted(dispatch); + function relocate() { + var touches = d3.touches(that); + scale0 = view.k; + touches.forEach(function(t) { + if (t.identifier in locations0) locations0[t.identifier] = location(t); + }); + return touches; + } + function started() { + var target = d3.event.target; + d3.select(target).on(touchmove, moved).on(touchend, ended); + targets.push(target); + var changed = d3.event.changedTouches; + for (var i = 0, n = changed.length; i < n; ++i) { + locations0[changed[i].identifier] = null; + } + var touches = relocate(), now = Date.now(); + if (touches.length === 1) { + if (now - touchtime < 500) { + var p = touches[0], l = locations0[p.identifier]; + scaleTo(view.k * 2); + translateTo(p, l); + d3_eventPreventDefault(); + zoomed(dispatch); + } + touchtime = now; + } else if (touches.length > 1) { + var p = touches[0], q = touches[1], dx = p[0] - q[0], dy = p[1] - q[1]; + distance0 = dx * dx + dy * dy; + } + } + function moved() { + var touches = d3.touches(that), p0, l0, p1, l1; + for (var i = 0, n = touches.length; i < n; ++i, l1 = null) { + p1 = touches[i]; + if (l1 = locations0[p1.identifier]) { + if (l0) break; + p0 = p1, l0 = l1; + } + } + if (l1) { + var distance1 = (distance1 = p1[0] - p0[0]) * distance1 + (distance1 = p1[1] - p0[1]) * distance1, scale1 = distance0 && Math.sqrt(distance1 / distance0); + p0 = [ (p0[0] + p1[0]) / 2, (p0[1] + p1[1]) / 2 ]; + l0 = [ (l0[0] + l1[0]) / 2, (l0[1] + l1[1]) / 2 ]; + scaleTo(scale1 * scale0); + } + touchtime = null; + translateTo(p0, l0); + zoomed(dispatch); + } + function ended() { + if (d3.event.touches.length) { + var changed = d3.event.changedTouches; + for (var i = 0, n = changed.length; i < n; ++i) { + delete locations0[changed[i].identifier]; + } + for (var identifier in locations0) { + return void relocate(); + } + } + d3.selectAll(targets).on(zoomName, null); + subject.on(mousedown, mousedowned).on(touchstart, touchstarted); + dragRestore(); + zoomended(dispatch); + } + } + function mousewheeled() { + var dispatch = event.of(this, arguments); + if (mousewheelTimer) clearTimeout(mousewheelTimer); else d3_selection_interrupt.call(this), + zoomstarted(dispatch); + mousewheelTimer = setTimeout(function() { + mousewheelTimer = null; + zoomended(dispatch); + }, 50); + d3_eventPreventDefault(); + var point = center || d3.mouse(this); + if (!translate0) translate0 = location(point); + scaleTo(Math.pow(2, d3_behavior_zoomDelta() * .002) * view.k); + translateTo(point, translate0); + zoomed(dispatch); + } + function mousewheelreset() { + translate0 = null; + } + function dblclicked() { + var dispatch = event.of(this, arguments), p = d3.mouse(this), l = location(p), k = Math.log(view.k) / Math.LN2; + zoomstarted(dispatch); + scaleTo(Math.pow(2, d3.event.shiftKey ? Math.ceil(k) - 1 : Math.floor(k) + 1)); + translateTo(p, l); + zoomed(dispatch); + zoomended(dispatch); + } + return d3.rebind(zoom, event, "on"); + }; + var d3_behavior_zoomInfinity = [ 0, Infinity ]; + var d3_behavior_zoomDelta, d3_behavior_zoomWheel = "onwheel" in d3_document ? (d3_behavior_zoomDelta = function() { + return -d3.event.deltaY * (d3.event.deltaMode ? 120 : 1); + }, "wheel") : "onmousewheel" in d3_document ? (d3_behavior_zoomDelta = function() { + return d3.event.wheelDelta; + }, "mousewheel") : (d3_behavior_zoomDelta = function() { + return -d3.event.detail; + }, "MozMousePixelScroll"); + function d3_Color() {} + d3_Color.prototype.toString = function() { + return this.rgb() + ""; + }; + d3.hsl = function(h, s, l) { + return arguments.length === 1 ? h instanceof d3_Hsl ? d3_hsl(h.h, h.s, h.l) : d3_rgb_parse("" + h, d3_rgb_hsl, d3_hsl) : d3_hsl(+h, +s, +l); + }; + function d3_hsl(h, s, l) { + return new d3_Hsl(h, s, l); + } + function d3_Hsl(h, s, l) { + this.h = h; + this.s = s; + this.l = l; + } + var d3_hslPrototype = d3_Hsl.prototype = new d3_Color(); + d3_hslPrototype.brighter = function(k) { + k = Math.pow(.7, arguments.length ? k : 1); + return d3_hsl(this.h, this.s, this.l / k); + }; + d3_hslPrototype.darker = function(k) { + k = Math.pow(.7, arguments.length ? k : 1); + return d3_hsl(this.h, this.s, k * this.l); + }; + d3_hslPrototype.rgb = function() { + return d3_hsl_rgb(this.h, this.s, this.l); + }; + function d3_hsl_rgb(h, s, l) { + var m1, m2; + h = isNaN(h) ? 0 : (h %= 360) < 0 ? h + 360 : h; + s = isNaN(s) ? 0 : s < 0 ? 0 : s > 1 ? 1 : s; + l = l < 0 ? 0 : l > 1 ? 1 : l; + m2 = l <= .5 ? l * (1 + s) : l + s - l * s; + m1 = 2 * l - m2; + function v(h) { + if (h > 360) h -= 360; else if (h < 0) h += 360; + if (h < 60) return m1 + (m2 - m1) * h / 60; + if (h < 180) return m2; + if (h < 240) return m1 + (m2 - m1) * (240 - h) / 60; + return m1; + } + function vv(h) { + return Math.round(v(h) * 255); + } + return d3_rgb(vv(h + 120), vv(h), vv(h - 120)); + } + d3.hcl = function(h, c, l) { + return arguments.length === 1 ? h instanceof d3_Hcl ? d3_hcl(h.h, h.c, h.l) : h instanceof d3_Lab ? d3_lab_hcl(h.l, h.a, h.b) : d3_lab_hcl((h = d3_rgb_lab((h = d3.rgb(h)).r, h.g, h.b)).l, h.a, h.b) : d3_hcl(+h, +c, +l); + }; + function d3_hcl(h, c, l) { + return new d3_Hcl(h, c, l); + } + function d3_Hcl(h, c, l) { + this.h = h; + this.c = c; + this.l = l; + } + var d3_hclPrototype = d3_Hcl.prototype = new d3_Color(); + d3_hclPrototype.brighter = function(k) { + return d3_hcl(this.h, this.c, Math.min(100, this.l + d3_lab_K * (arguments.length ? k : 1))); + }; + d3_hclPrototype.darker = function(k) { + return d3_hcl(this.h, this.c, Math.max(0, this.l - d3_lab_K * (arguments.length ? k : 1))); + }; + d3_hclPrototype.rgb = function() { + return d3_hcl_lab(this.h, this.c, this.l).rgb(); + }; + function d3_hcl_lab(h, c, l) { + if (isNaN(h)) h = 0; + if (isNaN(c)) c = 0; + return d3_lab(l, Math.cos(h *= d3_radians) * c, Math.sin(h) * c); + } + d3.lab = function(l, a, b) { + return arguments.length === 1 ? l instanceof d3_Lab ? d3_lab(l.l, l.a, l.b) : l instanceof d3_Hcl ? d3_hcl_lab(l.l, l.c, l.h) : d3_rgb_lab((l = d3.rgb(l)).r, l.g, l.b) : d3_lab(+l, +a, +b); + }; + function d3_lab(l, a, b) { + return new d3_Lab(l, a, b); + } + function d3_Lab(l, a, b) { + this.l = l; + this.a = a; + this.b = b; + } + var d3_lab_K = 18; + var d3_lab_X = .95047, d3_lab_Y = 1, d3_lab_Z = 1.08883; + var d3_labPrototype = d3_Lab.prototype = new d3_Color(); + d3_labPrototype.brighter = function(k) { + return d3_lab(Math.min(100, this.l + d3_lab_K * (arguments.length ? k : 1)), this.a, this.b); + }; + d3_labPrototype.darker = function(k) { + return d3_lab(Math.max(0, this.l - d3_lab_K * (arguments.length ? k : 1)), this.a, this.b); + }; + d3_labPrototype.rgb = function() { + return d3_lab_rgb(this.l, this.a, this.b); + }; + function d3_lab_rgb(l, a, b) { + var y = (l + 16) / 116, x = y + a / 500, z = y - b / 200; + x = d3_lab_xyz(x) * d3_lab_X; + y = d3_lab_xyz(y) * d3_lab_Y; + z = d3_lab_xyz(z) * d3_lab_Z; + return d3_rgb(d3_xyz_rgb(3.2404542 * x - 1.5371385 * y - .4985314 * z), d3_xyz_rgb(-.969266 * x + 1.8760108 * y + .041556 * z), d3_xyz_rgb(.0556434 * x - .2040259 * y + 1.0572252 * z)); + } + function d3_lab_hcl(l, a, b) { + return l > 0 ? d3_hcl(Math.atan2(b, a) * d3_degrees, Math.sqrt(a * a + b * b), l) : d3_hcl(NaN, NaN, l); + } + function d3_lab_xyz(x) { + return x > .206893034 ? x * x * x : (x - 4 / 29) / 7.787037; + } + function d3_xyz_lab(x) { + return x > .008856 ? Math.pow(x, 1 / 3) : 7.787037 * x + 4 / 29; + } + function d3_xyz_rgb(r) { + return Math.round(255 * (r <= .00304 ? 12.92 * r : 1.055 * Math.pow(r, 1 / 2.4) - .055)); + } + d3.rgb = function(r, g, b) { + return arguments.length === 1 ? r instanceof d3_Rgb ? d3_rgb(r.r, r.g, r.b) : d3_rgb_parse("" + r, d3_rgb, d3_hsl_rgb) : d3_rgb(~~r, ~~g, ~~b); + }; + function d3_rgbNumber(value) { + return d3_rgb(value >> 16, value >> 8 & 255, value & 255); + } + function d3_rgbString(value) { + return d3_rgbNumber(value) + ""; + } + function d3_rgb(r, g, b) { + return new d3_Rgb(r, g, b); + } + function d3_Rgb(r, g, b) { + this.r = r; + this.g = g; + this.b = b; + } + var d3_rgbPrototype = d3_Rgb.prototype = new d3_Color(); + d3_rgbPrototype.brighter = function(k) { + k = Math.pow(.7, arguments.length ? k : 1); + var r = this.r, g = this.g, b = this.b, i = 30; + if (!r && !g && !b) return d3_rgb(i, i, i); + if (r && r < i) r = i; + if (g && g < i) g = i; + if (b && b < i) b = i; + return d3_rgb(Math.min(255, ~~(r / k)), Math.min(255, ~~(g / k)), Math.min(255, ~~(b / k))); + }; + d3_rgbPrototype.darker = function(k) { + k = Math.pow(.7, arguments.length ? k : 1); + return d3_rgb(~~(k * this.r), ~~(k * this.g), ~~(k * this.b)); + }; + d3_rgbPrototype.hsl = function() { + return d3_rgb_hsl(this.r, this.g, this.b); + }; + d3_rgbPrototype.toString = function() { + return "#" + d3_rgb_hex(this.r) + d3_rgb_hex(this.g) + d3_rgb_hex(this.b); + }; + function d3_rgb_hex(v) { + return v < 16 ? "0" + Math.max(0, v).toString(16) : Math.min(255, v).toString(16); + } + function d3_rgb_parse(format, rgb, hsl) { + var r = 0, g = 0, b = 0, m1, m2, color; + m1 = /([a-z]+)\((.*)\)/i.exec(format); + if (m1) { + m2 = m1[2].split(","); + switch (m1[1]) { + case "hsl": + { + return hsl(parseFloat(m2[0]), parseFloat(m2[1]) / 100, parseFloat(m2[2]) / 100); + } + + case "rgb": + { + return rgb(d3_rgb_parseNumber(m2[0]), d3_rgb_parseNumber(m2[1]), d3_rgb_parseNumber(m2[2])); + } + } + } + if (color = d3_rgb_names.get(format)) return rgb(color.r, color.g, color.b); + if (format != null && format.charAt(0) === "#" && !isNaN(color = parseInt(format.substring(1), 16))) { + if (format.length === 4) { + r = (color & 3840) >> 4; + r = r >> 4 | r; + g = color & 240; + g = g >> 4 | g; + b = color & 15; + b = b << 4 | b; + } else if (format.length === 7) { + r = (color & 16711680) >> 16; + g = (color & 65280) >> 8; + b = color & 255; + } + } + return rgb(r, g, b); + } + function d3_rgb_hsl(r, g, b) { + var min = Math.min(r /= 255, g /= 255, b /= 255), max = Math.max(r, g, b), d = max - min, h, s, l = (max + min) / 2; + if (d) { + s = l < .5 ? d / (max + min) : d / (2 - max - min); + if (r == max) h = (g - b) / d + (g < b ? 6 : 0); else if (g == max) h = (b - r) / d + 2; else h = (r - g) / d + 4; + h *= 60; + } else { + h = NaN; + s = l > 0 && l < 1 ? 0 : h; + } + return d3_hsl(h, s, l); + } + function d3_rgb_lab(r, g, b) { + r = d3_rgb_xyz(r); + g = d3_rgb_xyz(g); + b = d3_rgb_xyz(b); + var x = d3_xyz_lab((.4124564 * r + .3575761 * g + .1804375 * b) / d3_lab_X), y = d3_xyz_lab((.2126729 * r + .7151522 * g + .072175 * b) / d3_lab_Y), z = d3_xyz_lab((.0193339 * r + .119192 * g + .9503041 * b) / d3_lab_Z); + return d3_lab(116 * y - 16, 500 * (x - y), 200 * (y - z)); + } + function d3_rgb_xyz(r) { + return (r /= 255) <= .04045 ? r / 12.92 : Math.pow((r + .055) / 1.055, 2.4); + } + function d3_rgb_parseNumber(c) { + var f = parseFloat(c); + return c.charAt(c.length - 1) === "%" ? Math.round(f * 2.55) : f; + } + var d3_rgb_names = d3.map({ + aliceblue: 15792383, + antiquewhite: 16444375, + aqua: 65535, + aquamarine: 8388564, + azure: 15794175, + beige: 16119260, + bisque: 16770244, + black: 0, + blanchedalmond: 16772045, + blue: 255, + blueviolet: 9055202, + brown: 10824234, + burlywood: 14596231, + cadetblue: 6266528, + chartreuse: 8388352, + chocolate: 13789470, + coral: 16744272, + cornflowerblue: 6591981, + cornsilk: 16775388, + crimson: 14423100, + cyan: 65535, + darkblue: 139, + darkcyan: 35723, + darkgoldenrod: 12092939, + darkgray: 11119017, + darkgreen: 25600, + darkgrey: 11119017, + darkkhaki: 12433259, + darkmagenta: 9109643, + darkolivegreen: 5597999, + darkorange: 16747520, + darkorchid: 10040012, + darkred: 9109504, + darksalmon: 15308410, + darkseagreen: 9419919, + darkslateblue: 4734347, + darkslategray: 3100495, + darkslategrey: 3100495, + darkturquoise: 52945, + darkviolet: 9699539, + deeppink: 16716947, + deepskyblue: 49151, + dimgray: 6908265, + dimgrey: 6908265, + dodgerblue: 2003199, + firebrick: 11674146, + floralwhite: 16775920, + forestgreen: 2263842, + fuchsia: 16711935, + gainsboro: 14474460, + ghostwhite: 16316671, + gold: 16766720, + goldenrod: 14329120, + gray: 8421504, + green: 32768, + greenyellow: 11403055, + grey: 8421504, + honeydew: 15794160, + hotpink: 16738740, + indianred: 13458524, + indigo: 4915330, + ivory: 16777200, + khaki: 15787660, + lavender: 15132410, + lavenderblush: 16773365, + lawngreen: 8190976, + lemonchiffon: 16775885, + lightblue: 11393254, + lightcoral: 15761536, + lightcyan: 14745599, + lightgoldenrodyellow: 16448210, + lightgray: 13882323, + lightgreen: 9498256, + lightgrey: 13882323, + lightpink: 16758465, + lightsalmon: 16752762, + lightseagreen: 2142890, + lightskyblue: 8900346, + lightslategray: 7833753, + lightslategrey: 7833753, + lightsteelblue: 11584734, + lightyellow: 16777184, + lime: 65280, + limegreen: 3329330, + linen: 16445670, + magenta: 16711935, + maroon: 8388608, + mediumaquamarine: 6737322, + mediumblue: 205, + mediumorchid: 12211667, + mediumpurple: 9662683, + mediumseagreen: 3978097, + mediumslateblue: 8087790, + mediumspringgreen: 64154, + mediumturquoise: 4772300, + mediumvioletred: 13047173, + midnightblue: 1644912, + mintcream: 16121850, + mistyrose: 16770273, + moccasin: 16770229, + navajowhite: 16768685, + navy: 128, + oldlace: 16643558, + olive: 8421376, + olivedrab: 7048739, + orange: 16753920, + orangered: 16729344, + orchid: 14315734, + palegoldenrod: 15657130, + palegreen: 10025880, + paleturquoise: 11529966, + palevioletred: 14381203, + papayawhip: 16773077, + peachpuff: 16767673, + peru: 13468991, + pink: 16761035, + plum: 14524637, + powderblue: 11591910, + purple: 8388736, + red: 16711680, + rosybrown: 12357519, + royalblue: 4286945, + saddlebrown: 9127187, + salmon: 16416882, + sandybrown: 16032864, + seagreen: 3050327, + seashell: 16774638, + sienna: 10506797, + silver: 12632256, + skyblue: 8900331, + slateblue: 6970061, + slategray: 7372944, + slategrey: 7372944, + snow: 16775930, + springgreen: 65407, + steelblue: 4620980, + tan: 13808780, + teal: 32896, + thistle: 14204888, + tomato: 16737095, + turquoise: 4251856, + violet: 15631086, + wheat: 16113331, + white: 16777215, + whitesmoke: 16119285, + yellow: 16776960, + yellowgreen: 10145074 + }); + d3_rgb_names.forEach(function(key, value) { + d3_rgb_names.set(key, d3_rgbNumber(value)); + }); + function d3_functor(v) { + return typeof v === "function" ? v : function() { + return v; + }; + } + d3.functor = d3_functor; + function d3_identity(d) { + return d; + } + d3.xhr = d3_xhrType(d3_identity); + function d3_xhrType(response) { + return function(url, mimeType, callback) { + if (arguments.length === 2 && typeof mimeType === "function") callback = mimeType, + mimeType = null; + return d3_xhr(url, mimeType, response, callback); + }; + } + function d3_xhr(url, mimeType, response, callback) { + var xhr = {}, dispatch = d3.dispatch("beforesend", "progress", "load", "error"), headers = {}, request = new XMLHttpRequest(), responseType = null; + if (d3_window.XDomainRequest && !("withCredentials" in request) && /^(http(s)?:)?\/\//.test(url)) request = new XDomainRequest(); + "onload" in request ? request.onload = request.onerror = respond : request.onreadystatechange = function() { + request.readyState > 3 && respond(); + }; + function respond() { + var status = request.status, result; + if (!status && request.responseText || status >= 200 && status < 300 || status === 304) { + try { + result = response.call(xhr, request); + } catch (e) { + dispatch.error.call(xhr, e); + return; + } + dispatch.load.call(xhr, result); + } else { + dispatch.error.call(xhr, request); + } + } + request.onprogress = function(event) { + var o = d3.event; + d3.event = event; + try { + dispatch.progress.call(xhr, request); + } finally { + d3.event = o; + } + }; + xhr.header = function(name, value) { + name = (name + "").toLowerCase(); + if (arguments.length < 2) return headers[name]; + if (value == null) delete headers[name]; else headers[name] = value + ""; + return xhr; + }; + xhr.mimeType = function(value) { + if (!arguments.length) return mimeType; + mimeType = value == null ? null : value + ""; + return xhr; + }; + xhr.responseType = function(value) { + if (!arguments.length) return responseType; + responseType = value; + return xhr; + }; + xhr.response = function(value) { + response = value; + return xhr; + }; + [ "get", "post" ].forEach(function(method) { + xhr[method] = function() { + return xhr.send.apply(xhr, [ method ].concat(d3_array(arguments))); + }; + }); + xhr.send = function(method, data, callback) { + if (arguments.length === 2 && typeof data === "function") callback = data, data = null; + request.open(method, url, true); + if (mimeType != null && !("accept" in headers)) headers["accept"] = mimeType + ",*/*"; + if (request.setRequestHeader) for (var name in headers) request.setRequestHeader(name, headers[name]); + if (mimeType != null && request.overrideMimeType) request.overrideMimeType(mimeType); + if (responseType != null) request.responseType = responseType; + if (callback != null) xhr.on("error", callback).on("load", function(request) { + callback(null, request); + }); + dispatch.beforesend.call(xhr, request); + request.send(data == null ? null : data); + return xhr; + }; + xhr.abort = function() { + request.abort(); + return xhr; + }; + d3.rebind(xhr, dispatch, "on"); + return callback == null ? xhr : xhr.get(d3_xhr_fixCallback(callback)); + } + function d3_xhr_fixCallback(callback) { + return callback.length === 1 ? function(error, request) { + callback(error == null ? request : null); + } : callback; + } + d3.dsv = function(delimiter, mimeType) { + var reFormat = new RegExp('["' + delimiter + "\n]"), delimiterCode = delimiter.charCodeAt(0); + function dsv(url, row, callback) { + if (arguments.length < 3) callback = row, row = null; + var xhr = d3_xhr(url, mimeType, row == null ? response : typedResponse(row), callback); + xhr.row = function(_) { + return arguments.length ? xhr.response((row = _) == null ? response : typedResponse(_)) : row; + }; + return xhr; + } + function response(request) { + return dsv.parse(request.responseText); + } + function typedResponse(f) { + return function(request) { + return dsv.parse(request.responseText, f); + }; + } + dsv.parse = function(text, f) { + var o; + return dsv.parseRows(text, function(row, i) { + if (o) return o(row, i - 1); + var a = new Function("d", "return {" + row.map(function(name, i) { + return JSON.stringify(name) + ": d[" + i + "]"; + }).join(",") + "}"); + o = f ? function(row, i) { + return f(a(row), i); + } : a; + }); + }; + dsv.parseRows = function(text, f) { + var EOL = {}, EOF = {}, rows = [], N = text.length, I = 0, n = 0, t, eol; + function token() { + if (I >= N) return EOF; + if (eol) return eol = false, EOL; + var j = I; + if (text.charCodeAt(j) === 34) { + var i = j; + while (i++ < N) { + if (text.charCodeAt(i) === 34) { + if (text.charCodeAt(i + 1) !== 34) break; + ++i; + } + } + I = i + 2; + var c = text.charCodeAt(i + 1); + if (c === 13) { + eol = true; + if (text.charCodeAt(i + 2) === 10) ++I; + } else if (c === 10) { + eol = true; + } + return text.substring(j + 1, i).replace(/""/g, '"'); + } + while (I < N) { + var c = text.charCodeAt(I++), k = 1; + if (c === 10) eol = true; else if (c === 13) { + eol = true; + if (text.charCodeAt(I) === 10) ++I, ++k; + } else if (c !== delimiterCode) continue; + return text.substring(j, I - k); + } + return text.substring(j); + } + while ((t = token()) !== EOF) { + var a = []; + while (t !== EOL && t !== EOF) { + a.push(t); + t = token(); + } + if (f && !(a = f(a, n++))) continue; + rows.push(a); + } + return rows; + }; + dsv.format = function(rows) { + if (Array.isArray(rows[0])) return dsv.formatRows(rows); + var fieldSet = new d3_Set(), fields = []; + rows.forEach(function(row) { + for (var field in row) { + if (!fieldSet.has(field)) { + fields.push(fieldSet.add(field)); + } + } + }); + return [ fields.map(formatValue).join(delimiter) ].concat(rows.map(function(row) { + return fields.map(function(field) { + return formatValue(row[field]); + }).join(delimiter); + })).join("\n"); + }; + dsv.formatRows = function(rows) { + return rows.map(formatRow).join("\n"); + }; + function formatRow(row) { + return row.map(formatValue).join(delimiter); + } + function formatValue(text) { + return reFormat.test(text) ? '"' + text.replace(/\"/g, '""') + '"' : text; + } + return dsv; + }; + d3.csv = d3.dsv(",", "text/csv"); + d3.tsv = d3.dsv(" ", "text/tab-separated-values"); + d3.touch = function(container, touches, identifier) { + if (arguments.length < 3) identifier = touches, touches = d3_eventSource().changedTouches; + if (touches) for (var i = 0, n = touches.length, touch; i < n; ++i) { + if ((touch = touches[i]).identifier === identifier) { + return d3_mousePoint(container, touch); + } + } + }; + var d3_timer_queueHead, d3_timer_queueTail, d3_timer_interval, d3_timer_timeout, d3_timer_active, d3_timer_frame = d3_window[d3_vendorSymbol(d3_window, "requestAnimationFrame")] || function(callback) { + setTimeout(callback, 17); + }; + d3.timer = function(callback, delay, then) { + var n = arguments.length; + if (n < 2) delay = 0; + if (n < 3) then = Date.now(); + var time = then + delay, timer = { + c: callback, + t: time, + f: false, + n: null + }; + if (d3_timer_queueTail) d3_timer_queueTail.n = timer; else d3_timer_queueHead = timer; + d3_timer_queueTail = timer; + if (!d3_timer_interval) { + d3_timer_timeout = clearTimeout(d3_timer_timeout); + d3_timer_interval = 1; + d3_timer_frame(d3_timer_step); + } + }; + function d3_timer_step() { + var now = d3_timer_mark(), delay = d3_timer_sweep() - now; + if (delay > 24) { + if (isFinite(delay)) { + clearTimeout(d3_timer_timeout); + d3_timer_timeout = setTimeout(d3_timer_step, delay); + } + d3_timer_interval = 0; + } else { + d3_timer_interval = 1; + d3_timer_frame(d3_timer_step); + } + } + d3.timer.flush = function() { + d3_timer_mark(); + d3_timer_sweep(); + }; + function d3_timer_mark() { + var now = Date.now(); + d3_timer_active = d3_timer_queueHead; + while (d3_timer_active) { + if (now >= d3_timer_active.t) d3_timer_active.f = d3_timer_active.c(now - d3_timer_active.t); + d3_timer_active = d3_timer_active.n; + } + return now; + } + function d3_timer_sweep() { + var t0, t1 = d3_timer_queueHead, time = Infinity; + while (t1) { + if (t1.f) { + t1 = t0 ? t0.n = t1.n : d3_timer_queueHead = t1.n; + } else { + if (t1.t < time) time = t1.t; + t1 = (t0 = t1).n; + } + } + d3_timer_queueTail = t0; + return time; + } + function d3_format_precision(x, p) { + return p - (x ? Math.ceil(Math.log(x) / Math.LN10) : 1); + } + d3.round = function(x, n) { + return n ? Math.round(x * (n = Math.pow(10, n))) / n : Math.round(x); + }; + var d3_formatPrefixes = [ "y", "z", "a", "f", "p", "n", "µ", "m", "", "k", "M", "G", "T", "P", "E", "Z", "Y" ].map(d3_formatPrefix); + d3.formatPrefix = function(value, precision) { + var i = 0; + if (value) { + if (value < 0) value *= -1; + if (precision) value = d3.round(value, d3_format_precision(value, precision)); + i = 1 + Math.floor(1e-12 + Math.log(value) / Math.LN10); + i = Math.max(-24, Math.min(24, Math.floor((i - 1) / 3) * 3)); + } + return d3_formatPrefixes[8 + i / 3]; + }; + function d3_formatPrefix(d, i) { + var k = Math.pow(10, abs(8 - i) * 3); + return { + scale: i > 8 ? function(d) { + return d / k; + } : function(d) { + return d * k; + }, + symbol: d + }; + } + function d3_locale_numberFormat(locale) { + var locale_decimal = locale.decimal, locale_thousands = locale.thousands, locale_grouping = locale.grouping, locale_currency = locale.currency, formatGroup = locale_grouping ? function(value) { + var i = value.length, t = [], j = 0, g = locale_grouping[0]; + while (i > 0 && g > 0) { + t.push(value.substring(i -= g, i + g)); + g = locale_grouping[j = (j + 1) % locale_grouping.length]; + } + return t.reverse().join(locale_thousands); + } : d3_identity; + return function(specifier) { + var match = d3_format_re.exec(specifier), fill = match[1] || " ", align = match[2] || ">", sign = match[3] || "", symbol = match[4] || "", zfill = match[5], width = +match[6], comma = match[7], precision = match[8], type = match[9], scale = 1, prefix = "", suffix = "", integer = false; + if (precision) precision = +precision.substring(1); + if (zfill || fill === "0" && align === "=") { + zfill = fill = "0"; + align = "="; + if (comma) width -= Math.floor((width - 1) / 4); + } + switch (type) { + case "n": + comma = true; + type = "g"; + break; + + case "%": + scale = 100; + suffix = "%"; + type = "f"; + break; + + case "p": + scale = 100; + suffix = "%"; + type = "r"; + break; + + case "b": + case "o": + case "x": + case "X": + if (symbol === "#") prefix = "0" + type.toLowerCase(); + + case "c": + case "d": + integer = true; + precision = 0; + break; + + case "s": + scale = -1; + type = "r"; + break; + } + if (symbol === "$") prefix = locale_currency[0], suffix = locale_currency[1]; + if (type == "r" && !precision) type = "g"; + if (precision != null) { + if (type == "g") precision = Math.max(1, Math.min(21, precision)); else if (type == "e" || type == "f") precision = Math.max(0, Math.min(20, precision)); + } + type = d3_format_types.get(type) || d3_format_typeDefault; + var zcomma = zfill && comma; + return function(value) { + var fullSuffix = suffix; + if (integer && value % 1) return ""; + var negative = value < 0 || value === 0 && 1 / value < 0 ? (value = -value, "-") : sign; + if (scale < 0) { + var unit = d3.formatPrefix(value, precision); + value = unit.scale(value); + fullSuffix = unit.symbol + suffix; + } else { + value *= scale; + } + value = type(value, precision); + var i = value.lastIndexOf("."), before = i < 0 ? value : value.substring(0, i), after = i < 0 ? "" : locale_decimal + value.substring(i + 1); + if (!zfill && comma) before = formatGroup(before); + var length = prefix.length + before.length + after.length + (zcomma ? 0 : negative.length), padding = length < width ? new Array(length = width - length + 1).join(fill) : ""; + if (zcomma) before = formatGroup(padding + before); + negative += prefix; + value = before + after; + return (align === "<" ? negative + value + padding : align === ">" ? padding + negative + value : align === "^" ? padding.substring(0, length >>= 1) + negative + value + padding.substring(length) : negative + (zcomma ? value : padding + value)) + fullSuffix; + }; + }; + } + var d3_format_re = /(?:([^{])?([<>=^]))?([+\- ])?([$#])?(0)?(\d+)?(,)?(\.-?\d+)?([a-z%])?/i; + var d3_format_types = d3.map({ + b: function(x) { + return x.toString(2); + }, + c: function(x) { + return String.fromCharCode(x); + }, + o: function(x) { + return x.toString(8); + }, + x: function(x) { + return x.toString(16); + }, + X: function(x) { + return x.toString(16).toUpperCase(); + }, + g: function(x, p) { + return x.toPrecision(p); + }, + e: function(x, p) { + return x.toExponential(p); + }, + f: function(x, p) { + return x.toFixed(p); + }, + r: function(x, p) { + return (x = d3.round(x, d3_format_precision(x, p))).toFixed(Math.max(0, Math.min(20, d3_format_precision(x * (1 + 1e-15), p)))); + } + }); + function d3_format_typeDefault(x) { + return x + ""; + } + var d3_time = d3.time = {}, d3_date = Date; + function d3_date_utc() { + this._ = new Date(arguments.length > 1 ? Date.UTC.apply(this, arguments) : arguments[0]); + } + d3_date_utc.prototype = { + getDate: function() { + return this._.getUTCDate(); + }, + getDay: function() { + return this._.getUTCDay(); + }, + getFullYear: function() { + return this._.getUTCFullYear(); + }, + getHours: function() { + return this._.getUTCHours(); + }, + getMilliseconds: function() { + return this._.getUTCMilliseconds(); + }, + getMinutes: function() { + return this._.getUTCMinutes(); + }, + getMonth: function() { + return this._.getUTCMonth(); + }, + getSeconds: function() { + return this._.getUTCSeconds(); + }, + getTime: function() { + return this._.getTime(); + }, + getTimezoneOffset: function() { + return 0; + }, + valueOf: function() { + return this._.valueOf(); + }, + setDate: function() { + d3_time_prototype.setUTCDate.apply(this._, arguments); + }, + setDay: function() { + d3_time_prototype.setUTCDay.apply(this._, arguments); + }, + setFullYear: function() { + d3_time_prototype.setUTCFullYear.apply(this._, arguments); + }, + setHours: function() { + d3_time_prototype.setUTCHours.apply(this._, arguments); + }, + setMilliseconds: function() { + d3_time_prototype.setUTCMilliseconds.apply(this._, arguments); + }, + setMinutes: function() { + d3_time_prototype.setUTCMinutes.apply(this._, arguments); + }, + setMonth: function() { + d3_time_prototype.setUTCMonth.apply(this._, arguments); + }, + setSeconds: function() { + d3_time_prototype.setUTCSeconds.apply(this._, arguments); + }, + setTime: function() { + d3_time_prototype.setTime.apply(this._, arguments); + } + }; + var d3_time_prototype = Date.prototype; + function d3_time_interval(local, step, number) { + function round(date) { + var d0 = local(date), d1 = offset(d0, 1); + return date - d0 < d1 - date ? d0 : d1; + } + function ceil(date) { + step(date = local(new d3_date(date - 1)), 1); + return date; + } + function offset(date, k) { + step(date = new d3_date(+date), k); + return date; + } + function range(t0, t1, dt) { + var time = ceil(t0), times = []; + if (dt > 1) { + while (time < t1) { + if (!(number(time) % dt)) times.push(new Date(+time)); + step(time, 1); + } + } else { + while (time < t1) times.push(new Date(+time)), step(time, 1); + } + return times; + } + function range_utc(t0, t1, dt) { + try { + d3_date = d3_date_utc; + var utc = new d3_date_utc(); + utc._ = t0; + return range(utc, t1, dt); + } finally { + d3_date = Date; + } + } + local.floor = local; + local.round = round; + local.ceil = ceil; + local.offset = offset; + local.range = range; + var utc = local.utc = d3_time_interval_utc(local); + utc.floor = utc; + utc.round = d3_time_interval_utc(round); + utc.ceil = d3_time_interval_utc(ceil); + utc.offset = d3_time_interval_utc(offset); + utc.range = range_utc; + return local; + } + function d3_time_interval_utc(method) { + return function(date, k) { + try { + d3_date = d3_date_utc; + var utc = new d3_date_utc(); + utc._ = date; + return method(utc, k)._; + } finally { + d3_date = Date; + } + }; + } + d3_time.year = d3_time_interval(function(date) { + date = d3_time.day(date); + date.setMonth(0, 1); + return date; + }, function(date, offset) { + date.setFullYear(date.getFullYear() + offset); + }, function(date) { + return date.getFullYear(); + }); + d3_time.years = d3_time.year.range; + d3_time.years.utc = d3_time.year.utc.range; + d3_time.day = d3_time_interval(function(date) { + var day = new d3_date(2e3, 0); + day.setFullYear(date.getFullYear(), date.getMonth(), date.getDate()); + return day; + }, function(date, offset) { + date.setDate(date.getDate() + offset); + }, function(date) { + return date.getDate() - 1; + }); + d3_time.days = d3_time.day.range; + d3_time.days.utc = d3_time.day.utc.range; + d3_time.dayOfYear = function(date) { + var year = d3_time.year(date); + return Math.floor((date - year - (date.getTimezoneOffset() - year.getTimezoneOffset()) * 6e4) / 864e5); + }; + [ "sunday", "monday", "tuesday", "wednesday", "thursday", "friday", "saturday" ].forEach(function(day, i) { + i = 7 - i; + var interval = d3_time[day] = d3_time_interval(function(date) { + (date = d3_time.day(date)).setDate(date.getDate() - (date.getDay() + i) % 7); + return date; + }, function(date, offset) { + date.setDate(date.getDate() + Math.floor(offset) * 7); + }, function(date) { + var day = d3_time.year(date).getDay(); + return Math.floor((d3_time.dayOfYear(date) + (day + i) % 7) / 7) - (day !== i); + }); + d3_time[day + "s"] = interval.range; + d3_time[day + "s"].utc = interval.utc.range; + d3_time[day + "OfYear"] = function(date) { + var day = d3_time.year(date).getDay(); + return Math.floor((d3_time.dayOfYear(date) + (day + i) % 7) / 7); + }; + }); + d3_time.week = d3_time.sunday; + d3_time.weeks = d3_time.sunday.range; + d3_time.weeks.utc = d3_time.sunday.utc.range; + d3_time.weekOfYear = d3_time.sundayOfYear; + function d3_locale_timeFormat(locale) { + var locale_dateTime = locale.dateTime, locale_date = locale.date, locale_time = locale.time, locale_periods = locale.periods, locale_days = locale.days, locale_shortDays = locale.shortDays, locale_months = locale.months, locale_shortMonths = locale.shortMonths; + function d3_time_format(template) { + var n = template.length; + function format(date) { + var string = [], i = -1, j = 0, c, p, f; + while (++i < n) { + if (template.charCodeAt(i) === 37) { + string.push(template.substring(j, i)); + if ((p = d3_time_formatPads[c = template.charAt(++i)]) != null) c = template.charAt(++i); + if (f = d3_time_formats[c]) c = f(date, p == null ? c === "e" ? " " : "0" : p); + string.push(c); + j = i + 1; + } + } + string.push(template.substring(j, i)); + return string.join(""); + } + format.parse = function(string) { + var d = { + y: 1900, + m: 0, + d: 1, + H: 0, + M: 0, + S: 0, + L: 0, + Z: null + }, i = d3_time_parse(d, template, string, 0); + if (i != string.length) return null; + if ("p" in d) d.H = d.H % 12 + d.p * 12; + var localZ = d.Z != null && d3_date !== d3_date_utc, date = new (localZ ? d3_date_utc : d3_date)(); + if ("j" in d) date.setFullYear(d.y, 0, d.j); else if ("w" in d && ("W" in d || "U" in d)) { + date.setFullYear(d.y, 0, 1); + date.setFullYear(d.y, 0, "W" in d ? (d.w + 6) % 7 + d.W * 7 - (date.getDay() + 5) % 7 : d.w + d.U * 7 - (date.getDay() + 6) % 7); + } else date.setFullYear(d.y, d.m, d.d); + date.setHours(d.H + Math.floor(d.Z / 100), d.M + d.Z % 100, d.S, d.L); + return localZ ? date._ : date; + }; + format.toString = function() { + return template; + }; + return format; + } + function d3_time_parse(date, template, string, j) { + var c, p, t, i = 0, n = template.length, m = string.length; + while (i < n) { + if (j >= m) return -1; + c = template.charCodeAt(i++); + if (c === 37) { + t = template.charAt(i++); + p = d3_time_parsers[t in d3_time_formatPads ? template.charAt(i++) : t]; + if (!p || (j = p(date, string, j)) < 0) return -1; + } else if (c != string.charCodeAt(j++)) { + return -1; + } + } + return j; + } + d3_time_format.utc = function(template) { + var local = d3_time_format(template); + function format(date) { + try { + d3_date = d3_date_utc; + var utc = new d3_date(); + utc._ = date; + return local(utc); + } finally { + d3_date = Date; + } + } + format.parse = function(string) { + try { + d3_date = d3_date_utc; + var date = local.parse(string); + return date && date._; + } finally { + d3_date = Date; + } + }; + format.toString = local.toString; + return format; + }; + d3_time_format.multi = d3_time_format.utc.multi = d3_time_formatMulti; + var d3_time_periodLookup = d3.map(), d3_time_dayRe = d3_time_formatRe(locale_days), d3_time_dayLookup = d3_time_formatLookup(locale_days), d3_time_dayAbbrevRe = d3_time_formatRe(locale_shortDays), d3_time_dayAbbrevLookup = d3_time_formatLookup(locale_shortDays), d3_time_monthRe = d3_time_formatRe(locale_months), d3_time_monthLookup = d3_time_formatLookup(locale_months), d3_time_monthAbbrevRe = d3_time_formatRe(locale_shortMonths), d3_time_monthAbbrevLookup = d3_time_formatLookup(locale_shortMonths); + locale_periods.forEach(function(p, i) { + d3_time_periodLookup.set(p.toLowerCase(), i); + }); + var d3_time_formats = { + a: function(d) { + return locale_shortDays[d.getDay()]; + }, + A: function(d) { + return locale_days[d.getDay()]; + }, + b: function(d) { + return locale_shortMonths[d.getMonth()]; + }, + B: function(d) { + return locale_months[d.getMonth()]; + }, + c: d3_time_format(locale_dateTime), + d: function(d, p) { + return d3_time_formatPad(d.getDate(), p, 2); + }, + e: function(d, p) { + return d3_time_formatPad(d.getDate(), p, 2); + }, + H: function(d, p) { + return d3_time_formatPad(d.getHours(), p, 2); + }, + I: function(d, p) { + return d3_time_formatPad(d.getHours() % 12 || 12, p, 2); + }, + j: function(d, p) { + return d3_time_formatPad(1 + d3_time.dayOfYear(d), p, 3); + }, + L: function(d, p) { + return d3_time_formatPad(d.getMilliseconds(), p, 3); + }, + m: function(d, p) { + return d3_time_formatPad(d.getMonth() + 1, p, 2); + }, + M: function(d, p) { + return d3_time_formatPad(d.getMinutes(), p, 2); + }, + p: function(d) { + return locale_periods[+(d.getHours() >= 12)]; + }, + S: function(d, p) { + return d3_time_formatPad(d.getSeconds(), p, 2); + }, + U: function(d, p) { + return d3_time_formatPad(d3_time.sundayOfYear(d), p, 2); + }, + w: function(d) { + return d.getDay(); + }, + W: function(d, p) { + return d3_time_formatPad(d3_time.mondayOfYear(d), p, 2); + }, + x: d3_time_format(locale_date), + X: d3_time_format(locale_time), + y: function(d, p) { + return d3_time_formatPad(d.getFullYear() % 100, p, 2); + }, + Y: function(d, p) { + return d3_time_formatPad(d.getFullYear() % 1e4, p, 4); + }, + Z: d3_time_zone, + "%": function() { + return "%"; + } + }; + var d3_time_parsers = { + a: d3_time_parseWeekdayAbbrev, + A: d3_time_parseWeekday, + b: d3_time_parseMonthAbbrev, + B: d3_time_parseMonth, + c: d3_time_parseLocaleFull, + d: d3_time_parseDay, + e: d3_time_parseDay, + H: d3_time_parseHour24, + I: d3_time_parseHour24, + j: d3_time_parseDayOfYear, + L: d3_time_parseMilliseconds, + m: d3_time_parseMonthNumber, + M: d3_time_parseMinutes, + p: d3_time_parseAmPm, + S: d3_time_parseSeconds, + U: d3_time_parseWeekNumberSunday, + w: d3_time_parseWeekdayNumber, + W: d3_time_parseWeekNumberMonday, + x: d3_time_parseLocaleDate, + X: d3_time_parseLocaleTime, + y: d3_time_parseYear, + Y: d3_time_parseFullYear, + Z: d3_time_parseZone, + "%": d3_time_parseLiteralPercent + }; + function d3_time_parseWeekdayAbbrev(date, string, i) { + d3_time_dayAbbrevRe.lastIndex = 0; + var n = d3_time_dayAbbrevRe.exec(string.substring(i)); + return n ? (date.w = d3_time_dayAbbrevLookup.get(n[0].toLowerCase()), i + n[0].length) : -1; + } + function d3_time_parseWeekday(date, string, i) { + d3_time_dayRe.lastIndex = 0; + var n = d3_time_dayRe.exec(string.substring(i)); + return n ? (date.w = d3_time_dayLookup.get(n[0].toLowerCase()), i + n[0].length) : -1; + } + function d3_time_parseMonthAbbrev(date, string, i) { + d3_time_monthAbbrevRe.lastIndex = 0; + var n = d3_time_monthAbbrevRe.exec(string.substring(i)); + return n ? (date.m = d3_time_monthAbbrevLookup.get(n[0].toLowerCase()), i + n[0].length) : -1; + } + function d3_time_parseMonth(date, string, i) { + d3_time_monthRe.lastIndex = 0; + var n = d3_time_monthRe.exec(string.substring(i)); + return n ? (date.m = d3_time_monthLookup.get(n[0].toLowerCase()), i + n[0].length) : -1; + } + function d3_time_parseLocaleFull(date, string, i) { + return d3_time_parse(date, d3_time_formats.c.toString(), string, i); + } + function d3_time_parseLocaleDate(date, string, i) { + return d3_time_parse(date, d3_time_formats.x.toString(), string, i); + } + function d3_time_parseLocaleTime(date, string, i) { + return d3_time_parse(date, d3_time_formats.X.toString(), string, i); + } + function d3_time_parseAmPm(date, string, i) { + var n = d3_time_periodLookup.get(string.substring(i, i += 2).toLowerCase()); + return n == null ? -1 : (date.p = n, i); + } + return d3_time_format; + } + var d3_time_formatPads = { + "-": "", + _: " ", + "0": "0" + }, d3_time_numberRe = /^\s*\d+/, d3_time_percentRe = /^%/; + function d3_time_formatPad(value, fill, width) { + var sign = value < 0 ? "-" : "", string = (sign ? -value : value) + "", length = string.length; + return sign + (length < width ? new Array(width - length + 1).join(fill) + string : string); + } + function d3_time_formatRe(names) { + return new RegExp("^(?:" + names.map(d3.requote).join("|") + ")", "i"); + } + function d3_time_formatLookup(names) { + var map = new d3_Map(), i = -1, n = names.length; + while (++i < n) map.set(names[i].toLowerCase(), i); + return map; + } + function d3_time_parseWeekdayNumber(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 1)); + return n ? (date.w = +n[0], i + n[0].length) : -1; + } + function d3_time_parseWeekNumberSunday(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i)); + return n ? (date.U = +n[0], i + n[0].length) : -1; + } + function d3_time_parseWeekNumberMonday(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i)); + return n ? (date.W = +n[0], i + n[0].length) : -1; + } + function d3_time_parseFullYear(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 4)); + return n ? (date.y = +n[0], i + n[0].length) : -1; + } + function d3_time_parseYear(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 2)); + return n ? (date.y = d3_time_expandYear(+n[0]), i + n[0].length) : -1; + } + function d3_time_parseZone(date, string, i) { + return /^[+-]\d{4}$/.test(string = string.substring(i, i + 5)) ? (date.Z = -string, + i + 5) : -1; + } + function d3_time_expandYear(d) { + return d + (d > 68 ? 1900 : 2e3); + } + function d3_time_parseMonthNumber(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 2)); + return n ? (date.m = n[0] - 1, i + n[0].length) : -1; + } + function d3_time_parseDay(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 2)); + return n ? (date.d = +n[0], i + n[0].length) : -1; + } + function d3_time_parseDayOfYear(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 3)); + return n ? (date.j = +n[0], i + n[0].length) : -1; + } + function d3_time_parseHour24(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 2)); + return n ? (date.H = +n[0], i + n[0].length) : -1; + } + function d3_time_parseMinutes(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 2)); + return n ? (date.M = +n[0], i + n[0].length) : -1; + } + function d3_time_parseSeconds(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 2)); + return n ? (date.S = +n[0], i + n[0].length) : -1; + } + function d3_time_parseMilliseconds(date, string, i) { + d3_time_numberRe.lastIndex = 0; + var n = d3_time_numberRe.exec(string.substring(i, i + 3)); + return n ? (date.L = +n[0], i + n[0].length) : -1; + } + function d3_time_zone(d) { + var z = d.getTimezoneOffset(), zs = z > 0 ? "-" : "+", zh = ~~(abs(z) / 60), zm = abs(z) % 60; + return zs + d3_time_formatPad(zh, "0", 2) + d3_time_formatPad(zm, "0", 2); + } + function d3_time_parseLiteralPercent(date, string, i) { + d3_time_percentRe.lastIndex = 0; + var n = d3_time_percentRe.exec(string.substring(i, i + 1)); + return n ? i + n[0].length : -1; + } + function d3_time_formatMulti(formats) { + var n = formats.length, i = -1; + while (++i < n) formats[i][0] = this(formats[i][0]); + return function(date) { + var i = 0, f = formats[i]; + while (!f[1](date)) f = formats[++i]; + return f[0](date); + }; + } + d3.locale = function(locale) { + return { + numberFormat: d3_locale_numberFormat(locale), + timeFormat: d3_locale_timeFormat(locale) + }; + }; + var d3_locale_enUS = d3.locale({ + decimal: ".", + thousands: ",", + grouping: [ 3 ], + currency: [ "$", "" ], + dateTime: "%a %b %e %X %Y", + date: "%m/%d/%Y", + time: "%H:%M:%S", + periods: [ "AM", "PM" ], + days: [ "Sunday", "Monday", "Tuesday", "Wednesday", "Thursday", "Friday", "Saturday" ], + shortDays: [ "Sun", "Mon", "Tue", "Wed", "Thu", "Fri", "Sat" ], + months: [ "January", "February", "March", "April", "May", "June", "July", "August", "September", "October", "November", "December" ], + shortMonths: [ "Jan", "Feb", "Mar", "Apr", "May", "Jun", "Jul", "Aug", "Sep", "Oct", "Nov", "Dec" ] + }); + d3.format = d3_locale_enUS.numberFormat; + d3.geo = {}; + function d3_adder() {} + d3_adder.prototype = { + s: 0, + t: 0, + add: function(y) { + d3_adderSum(y, this.t, d3_adderTemp); + d3_adderSum(d3_adderTemp.s, this.s, this); + if (this.s) this.t += d3_adderTemp.t; else this.s = d3_adderTemp.t; + }, + reset: function() { + this.s = this.t = 0; + }, + valueOf: function() { + return this.s; + } + }; + var d3_adderTemp = new d3_adder(); + function d3_adderSum(a, b, o) { + var x = o.s = a + b, bv = x - a, av = x - bv; + o.t = a - av + (b - bv); + } + d3.geo.stream = function(object, listener) { + if (object && d3_geo_streamObjectType.hasOwnProperty(object.type)) { + d3_geo_streamObjectType[object.type](object, listener); + } else { + d3_geo_streamGeometry(object, listener); + } + }; + function d3_geo_streamGeometry(geometry, listener) { + if (geometry && d3_geo_streamGeometryType.hasOwnProperty(geometry.type)) { + d3_geo_streamGeometryType[geometry.type](geometry, listener); + } + } + var d3_geo_streamObjectType = { + Feature: function(feature, listener) { + d3_geo_streamGeometry(feature.geometry, listener); + }, + FeatureCollection: function(object, listener) { + var features = object.features, i = -1, n = features.length; + while (++i < n) d3_geo_streamGeometry(features[i].geometry, listener); + } + }; + var d3_geo_streamGeometryType = { + Sphere: function(object, listener) { + listener.sphere(); + }, + Point: function(object, listener) { + object = object.coordinates; + listener.point(object[0], object[1], object[2]); + }, + MultiPoint: function(object, listener) { + var coordinates = object.coordinates, i = -1, n = coordinates.length; + while (++i < n) object = coordinates[i], listener.point(object[0], object[1], object[2]); + }, + LineString: function(object, listener) { + d3_geo_streamLine(object.coordinates, listener, 0); + }, + MultiLineString: function(object, listener) { + var coordinates = object.coordinates, i = -1, n = coordinates.length; + while (++i < n) d3_geo_streamLine(coordinates[i], listener, 0); + }, + Polygon: function(object, listener) { + d3_geo_streamPolygon(object.coordinates, listener); + }, + MultiPolygon: function(object, listener) { + var coordinates = object.coordinates, i = -1, n = coordinates.length; + while (++i < n) d3_geo_streamPolygon(coordinates[i], listener); + }, + GeometryCollection: function(object, listener) { + var geometries = object.geometries, i = -1, n = geometries.length; + while (++i < n) d3_geo_streamGeometry(geometries[i], listener); + } + }; + function d3_geo_streamLine(coordinates, listener, closed) { + var i = -1, n = coordinates.length - closed, coordinate; + listener.lineStart(); + while (++i < n) coordinate = coordinates[i], listener.point(coordinate[0], coordinate[1], coordinate[2]); + listener.lineEnd(); + } + function d3_geo_streamPolygon(coordinates, listener) { + var i = -1, n = coordinates.length; + listener.polygonStart(); + while (++i < n) d3_geo_streamLine(coordinates[i], listener, 1); + listener.polygonEnd(); + } + d3.geo.area = function(object) { + d3_geo_areaSum = 0; + d3.geo.stream(object, d3_geo_area); + return d3_geo_areaSum; + }; + var d3_geo_areaSum, d3_geo_areaRingSum = new d3_adder(); + var d3_geo_area = { + sphere: function() { + d3_geo_areaSum += 4 * π; + }, + point: d3_noop, + lineStart: d3_noop, + lineEnd: d3_noop, + polygonStart: function() { + d3_geo_areaRingSum.reset(); + d3_geo_area.lineStart = d3_geo_areaRingStart; + }, + polygonEnd: function() { + var area = 2 * d3_geo_areaRingSum; + d3_geo_areaSum += area < 0 ? 4 * π + area : area; + d3_geo_area.lineStart = d3_geo_area.lineEnd = d3_geo_area.point = d3_noop; + } + }; + function d3_geo_areaRingStart() { + var λ00, φ00, λ0, cosφ0, sinφ0; + d3_geo_area.point = function(λ, φ) { + d3_geo_area.point = nextPoint; + λ0 = (λ00 = λ) * d3_radians, cosφ0 = Math.cos(φ = (φ00 = φ) * d3_radians / 2 + π / 4), + sinφ0 = Math.sin(φ); + }; + function nextPoint(λ, φ) { + λ *= d3_radians; + φ = φ * d3_radians / 2 + π / 4; + var dλ = λ - λ0, sdλ = dλ >= 0 ? 1 : -1, adλ = sdλ * dλ, cosφ = Math.cos(φ), sinφ = Math.sin(φ), k = sinφ0 * sinφ, u = cosφ0 * cosφ + k * Math.cos(adλ), v = k * sdλ * Math.sin(adλ); + d3_geo_areaRingSum.add(Math.atan2(v, u)); + λ0 = λ, cosφ0 = cosφ, sinφ0 = sinφ; + } + d3_geo_area.lineEnd = function() { + nextPoint(λ00, φ00); + }; + } + function d3_geo_cartesian(spherical) { + var λ = spherical[0], φ = spherical[1], cosφ = Math.cos(φ); + return [ cosφ * Math.cos(λ), cosφ * Math.sin(λ), Math.sin(φ) ]; + } + function d3_geo_cartesianDot(a, b) { + return a[0] * b[0] + a[1] * b[1] + a[2] * b[2]; + } + function d3_geo_cartesianCross(a, b) { + return [ a[1] * b[2] - a[2] * b[1], a[2] * b[0] - a[0] * b[2], a[0] * b[1] - a[1] * b[0] ]; + } + function d3_geo_cartesianAdd(a, b) { + a[0] += b[0]; + a[1] += b[1]; + a[2] += b[2]; + } + function d3_geo_cartesianScale(vector, k) { + return [ vector[0] * k, vector[1] * k, vector[2] * k ]; + } + function d3_geo_cartesianNormalize(d) { + var l = Math.sqrt(d[0] * d[0] + d[1] * d[1] + d[2] * d[2]); + d[0] /= l; + d[1] /= l; + d[2] /= l; + } + function d3_geo_spherical(cartesian) { + return [ Math.atan2(cartesian[1], cartesian[0]), d3_asin(cartesian[2]) ]; + } + function d3_geo_sphericalEqual(a, b) { + return abs(a[0] - b[0]) < ε && abs(a[1] - b[1]) < ε; + } + d3.geo.bounds = function() { + var λ0, φ0, λ1, φ1, λ_, λ__, φ__, p0, dλSum, ranges, range; + var bound = { + point: point, + lineStart: lineStart, + lineEnd: lineEnd, + polygonStart: function() { + bound.point = ringPoint; + bound.lineStart = ringStart; + bound.lineEnd = ringEnd; + dλSum = 0; + d3_geo_area.polygonStart(); + }, + polygonEnd: function() { + d3_geo_area.polygonEnd(); + bound.point = point; + bound.lineStart = lineStart; + bound.lineEnd = lineEnd; + if (d3_geo_areaRingSum < 0) λ0 = -(λ1 = 180), φ0 = -(φ1 = 90); else if (dλSum > ε) φ1 = 90; else if (dλSum < -ε) φ0 = -90; + range[0] = λ0, range[1] = λ1; + } + }; + function point(λ, φ) { + ranges.push(range = [ λ0 = λ, λ1 = λ ]); + if (φ < φ0) φ0 = φ; + if (φ > φ1) φ1 = φ; + } + function linePoint(λ, φ) { + var p = d3_geo_cartesian([ λ * d3_radians, φ * d3_radians ]); + if (p0) { + var normal = d3_geo_cartesianCross(p0, p), equatorial = [ normal[1], -normal[0], 0 ], inflection = d3_geo_cartesianCross(equatorial, normal); + d3_geo_cartesianNormalize(inflection); + inflection = d3_geo_spherical(inflection); + var dλ = λ - λ_, s = dλ > 0 ? 1 : -1, λi = inflection[0] * d3_degrees * s, antimeridian = abs(dλ) > 180; + if (antimeridian ^ (s * λ_ < λi && λi < s * λ)) { + var φi = inflection[1] * d3_degrees; + if (φi > φ1) φ1 = φi; + } else if (λi = (λi + 360) % 360 - 180, antimeridian ^ (s * λ_ < λi && λi < s * λ)) { + var φi = -inflection[1] * d3_degrees; + if (φi < φ0) φ0 = φi; + } else { + if (φ < φ0) φ0 = φ; + if (φ > φ1) φ1 = φ; + } + if (antimeridian) { + if (λ < λ_) { + if (angle(λ0, λ) > angle(λ0, λ1)) λ1 = λ; + } else { + if (angle(λ, λ1) > angle(λ0, λ1)) λ0 = λ; + } + } else { + if (λ1 >= λ0) { + if (λ < λ0) λ0 = λ; + if (λ > λ1) λ1 = λ; + } else { + if (λ > λ_) { + if (angle(λ0, λ) > angle(λ0, λ1)) λ1 = λ; + } else { + if (angle(λ, λ1) > angle(λ0, λ1)) λ0 = λ; + } + } + } + } else { + point(λ, φ); + } + p0 = p, λ_ = λ; + } + function lineStart() { + bound.point = linePoint; + } + function lineEnd() { + range[0] = λ0, range[1] = λ1; + bound.point = point; + p0 = null; + } + function ringPoint(λ, φ) { + if (p0) { + var dλ = λ - λ_; + dλSum += abs(dλ) > 180 ? dλ + (dλ > 0 ? 360 : -360) : dλ; + } else λ__ = λ, φ__ = φ; + d3_geo_area.point(λ, φ); + linePoint(λ, φ); + } + function ringStart() { + d3_geo_area.lineStart(); + } + function ringEnd() { + ringPoint(λ__, φ__); + d3_geo_area.lineEnd(); + if (abs(dλSum) > ε) λ0 = -(λ1 = 180); + range[0] = λ0, range[1] = λ1; + p0 = null; + } + function angle(λ0, λ1) { + return (λ1 -= λ0) < 0 ? λ1 + 360 : λ1; + } + function compareRanges(a, b) { + return a[0] - b[0]; + } + function withinRange(x, range) { + return range[0] <= range[1] ? range[0] <= x && x <= range[1] : x < range[0] || range[1] < x; + } + return function(feature) { + φ1 = λ1 = -(λ0 = φ0 = Infinity); + ranges = []; + d3.geo.stream(feature, bound); + var n = ranges.length; + if (n) { + ranges.sort(compareRanges); + for (var i = 1, a = ranges[0], b, merged = [ a ]; i < n; ++i) { + b = ranges[i]; + if (withinRange(b[0], a) || withinRange(b[1], a)) { + if (angle(a[0], b[1]) > angle(a[0], a[1])) a[1] = b[1]; + if (angle(b[0], a[1]) > angle(a[0], a[1])) a[0] = b[0]; + } else { + merged.push(a = b); + } + } + var best = -Infinity, dλ; + for (var n = merged.length - 1, i = 0, a = merged[n], b; i <= n; a = b, ++i) { + b = merged[i]; + if ((dλ = angle(a[1], b[0])) > best) best = dλ, λ0 = b[0], λ1 = a[1]; + } + } + ranges = range = null; + return λ0 === Infinity || φ0 === Infinity ? [ [ NaN, NaN ], [ NaN, NaN ] ] : [ [ λ0, φ0 ], [ λ1, φ1 ] ]; + }; + }(); + d3.geo.centroid = function(object) { + d3_geo_centroidW0 = d3_geo_centroidW1 = d3_geo_centroidX0 = d3_geo_centroidY0 = d3_geo_centroidZ0 = d3_geo_centroidX1 = d3_geo_centroidY1 = d3_geo_centroidZ1 = d3_geo_centroidX2 = d3_geo_centroidY2 = d3_geo_centroidZ2 = 0; + d3.geo.stream(object, d3_geo_centroid); + var x = d3_geo_centroidX2, y = d3_geo_centroidY2, z = d3_geo_centroidZ2, m = x * x + y * y + z * z; + if (m < ε2) { + x = d3_geo_centroidX1, y = d3_geo_centroidY1, z = d3_geo_centroidZ1; + if (d3_geo_centroidW1 < ε) x = d3_geo_centroidX0, y = d3_geo_centroidY0, z = d3_geo_centroidZ0; + m = x * x + y * y + z * z; + if (m < ε2) return [ NaN, NaN ]; + } + return [ Math.atan2(y, x) * d3_degrees, d3_asin(z / Math.sqrt(m)) * d3_degrees ]; + }; + var d3_geo_centroidW0, d3_geo_centroidW1, d3_geo_centroidX0, d3_geo_centroidY0, d3_geo_centroidZ0, d3_geo_centroidX1, d3_geo_centroidY1, d3_geo_centroidZ1, d3_geo_centroidX2, d3_geo_centroidY2, d3_geo_centroidZ2; + var d3_geo_centroid = { + sphere: d3_noop, + point: d3_geo_centroidPoint, + lineStart: d3_geo_centroidLineStart, + lineEnd: d3_geo_centroidLineEnd, + polygonStart: function() { + d3_geo_centroid.lineStart = d3_geo_centroidRingStart; + }, + polygonEnd: function() { + d3_geo_centroid.lineStart = d3_geo_centroidLineStart; + } + }; + function d3_geo_centroidPoint(λ, φ) { + λ *= d3_radians; + var cosφ = Math.cos(φ *= d3_radians); + d3_geo_centroidPointXYZ(cosφ * Math.cos(λ), cosφ * Math.sin(λ), Math.sin(φ)); + } + function d3_geo_centroidPointXYZ(x, y, z) { + ++d3_geo_centroidW0; + d3_geo_centroidX0 += (x - d3_geo_centroidX0) / d3_geo_centroidW0; + d3_geo_centroidY0 += (y - d3_geo_centroidY0) / d3_geo_centroidW0; + d3_geo_centroidZ0 += (z - d3_geo_centroidZ0) / d3_geo_centroidW0; + } + function d3_geo_centroidLineStart() { + var x0, y0, z0; + d3_geo_centroid.point = function(λ, φ) { + λ *= d3_radians; + var cosφ = Math.cos(φ *= d3_radians); + x0 = cosφ * Math.cos(λ); + y0 = cosφ * Math.sin(λ); + z0 = Math.sin(φ); + d3_geo_centroid.point = nextPoint; + d3_geo_centroidPointXYZ(x0, y0, z0); + }; + function nextPoint(λ, φ) { + λ *= d3_radians; + var cosφ = Math.cos(φ *= d3_radians), x = cosφ * Math.cos(λ), y = cosφ * Math.sin(λ), z = Math.sin(φ), w = Math.atan2(Math.sqrt((w = y0 * z - z0 * y) * w + (w = z0 * x - x0 * z) * w + (w = x0 * y - y0 * x) * w), x0 * x + y0 * y + z0 * z); + d3_geo_centroidW1 += w; + d3_geo_centroidX1 += w * (x0 + (x0 = x)); + d3_geo_centroidY1 += w * (y0 + (y0 = y)); + d3_geo_centroidZ1 += w * (z0 + (z0 = z)); + d3_geo_centroidPointXYZ(x0, y0, z0); + } + } + function d3_geo_centroidLineEnd() { + d3_geo_centroid.point = d3_geo_centroidPoint; + } + function d3_geo_centroidRingStart() { + var λ00, φ00, x0, y0, z0; + d3_geo_centroid.point = function(λ, φ) { + λ00 = λ, φ00 = φ; + d3_geo_centroid.point = nextPoint; + λ *= d3_radians; + var cosφ = Math.cos(φ *= d3_radians); + x0 = cosφ * Math.cos(λ); + y0 = cosφ * Math.sin(λ); + z0 = Math.sin(φ); + d3_geo_centroidPointXYZ(x0, y0, z0); + }; + d3_geo_centroid.lineEnd = function() { + nextPoint(λ00, φ00); + d3_geo_centroid.lineEnd = d3_geo_centroidLineEnd; + d3_geo_centroid.point = d3_geo_centroidPoint; + }; + function nextPoint(λ, φ) { + λ *= d3_radians; + var cosφ = Math.cos(φ *= d3_radians), x = cosφ * Math.cos(λ), y = cosφ * Math.sin(λ), z = Math.sin(φ), cx = y0 * z - z0 * y, cy = z0 * x - x0 * z, cz = x0 * y - y0 * x, m = Math.sqrt(cx * cx + cy * cy + cz * cz), u = x0 * x + y0 * y + z0 * z, v = m && -d3_acos(u) / m, w = Math.atan2(m, u); + d3_geo_centroidX2 += v * cx; + d3_geo_centroidY2 += v * cy; + d3_geo_centroidZ2 += v * cz; + d3_geo_centroidW1 += w; + d3_geo_centroidX1 += w * (x0 + (x0 = x)); + d3_geo_centroidY1 += w * (y0 + (y0 = y)); + d3_geo_centroidZ1 += w * (z0 + (z0 = z)); + d3_geo_centroidPointXYZ(x0, y0, z0); + } + } + function d3_true() { + return true; + } + function d3_geo_clipPolygon(segments, compare, clipStartInside, interpolate, listener) { + var subject = [], clip = []; + segments.forEach(function(segment) { + if ((n = segment.length - 1) <= 0) return; + var n, p0 = segment[0], p1 = segment[n]; + if (d3_geo_sphericalEqual(p0, p1)) { + listener.lineStart(); + for (var i = 0; i < n; ++i) listener.point((p0 = segment[i])[0], p0[1]); + listener.lineEnd(); + return; + } + var a = new d3_geo_clipPolygonIntersection(p0, segment, null, true), b = new d3_geo_clipPolygonIntersection(p0, null, a, false); + a.o = b; + subject.push(a); + clip.push(b); + a = new d3_geo_clipPolygonIntersection(p1, segment, null, false); + b = new d3_geo_clipPolygonIntersection(p1, null, a, true); + a.o = b; + subject.push(a); + clip.push(b); + }); + clip.sort(compare); + d3_geo_clipPolygonLinkCircular(subject); + d3_geo_clipPolygonLinkCircular(clip); + if (!subject.length) return; + for (var i = 0, entry = clipStartInside, n = clip.length; i < n; ++i) { + clip[i].e = entry = !entry; + } + var start = subject[0], points, point; + while (1) { + var current = start, isSubject = true; + while (current.v) if ((current = current.n) === start) return; + points = current.z; + listener.lineStart(); + do { + current.v = current.o.v = true; + if (current.e) { + if (isSubject) { + for (var i = 0, n = points.length; i < n; ++i) listener.point((point = points[i])[0], point[1]); + } else { + interpolate(current.x, current.n.x, 1, listener); + } + current = current.n; + } else { + if (isSubject) { + points = current.p.z; + for (var i = points.length - 1; i >= 0; --i) listener.point((point = points[i])[0], point[1]); + } else { + interpolate(current.x, current.p.x, -1, listener); + } + current = current.p; + } + current = current.o; + points = current.z; + isSubject = !isSubject; + } while (!current.v); + listener.lineEnd(); + } + } + function d3_geo_clipPolygonLinkCircular(array) { + if (!(n = array.length)) return; + var n, i = 0, a = array[0], b; + while (++i < n) { + a.n = b = array[i]; + b.p = a; + a = b; + } + a.n = b = array[0]; + b.p = a; + } + function d3_geo_clipPolygonIntersection(point, points, other, entry) { + this.x = point; + this.z = points; + this.o = other; + this.e = entry; + this.v = false; + this.n = this.p = null; + } + function d3_geo_clip(pointVisible, clipLine, interpolate, clipStart) { + return function(rotate, listener) { + var line = clipLine(listener), rotatedClipStart = rotate.invert(clipStart[0], clipStart[1]); + var clip = { + point: point, + lineStart: lineStart, + lineEnd: lineEnd, + polygonStart: function() { + clip.point = pointRing; + clip.lineStart = ringStart; + clip.lineEnd = ringEnd; + segments = []; + polygon = []; + }, + polygonEnd: function() { + clip.point = point; + clip.lineStart = lineStart; + clip.lineEnd = lineEnd; + segments = d3.merge(segments); + var clipStartInside = d3_geo_pointInPolygon(rotatedClipStart, polygon); + if (segments.length) { + if (!polygonStarted) listener.polygonStart(), polygonStarted = true; + d3_geo_clipPolygon(segments, d3_geo_clipSort, clipStartInside, interpolate, listener); + } else if (clipStartInside) { + if (!polygonStarted) listener.polygonStart(), polygonStarted = true; + listener.lineStart(); + interpolate(null, null, 1, listener); + listener.lineEnd(); + } + if (polygonStarted) listener.polygonEnd(), polygonStarted = false; + segments = polygon = null; + }, + sphere: function() { + listener.polygonStart(); + listener.lineStart(); + interpolate(null, null, 1, listener); + listener.lineEnd(); + listener.polygonEnd(); + } + }; + function point(λ, φ) { + var point = rotate(λ, φ); + if (pointVisible(λ = point[0], φ = point[1])) listener.point(λ, φ); + } + function pointLine(λ, φ) { + var point = rotate(λ, φ); + line.point(point[0], point[1]); + } + function lineStart() { + clip.point = pointLine; + line.lineStart(); + } + function lineEnd() { + clip.point = point; + line.lineEnd(); + } + var segments; + var buffer = d3_geo_clipBufferListener(), ringListener = clipLine(buffer), polygonStarted = false, polygon, ring; + function pointRing(λ, φ) { + ring.push([ λ, φ ]); + var point = rotate(λ, φ); + ringListener.point(point[0], point[1]); + } + function ringStart() { + ringListener.lineStart(); + ring = []; + } + function ringEnd() { + pointRing(ring[0][0], ring[0][1]); + ringListener.lineEnd(); + var clean = ringListener.clean(), ringSegments = buffer.buffer(), segment, n = ringSegments.length; + ring.pop(); + polygon.push(ring); + ring = null; + if (!n) return; + if (clean & 1) { + segment = ringSegments[0]; + var n = segment.length - 1, i = -1, point; + if (n > 0) { + if (!polygonStarted) listener.polygonStart(), polygonStarted = true; + listener.lineStart(); + while (++i < n) listener.point((point = segment[i])[0], point[1]); + listener.lineEnd(); + } + return; + } + if (n > 1 && clean & 2) ringSegments.push(ringSegments.pop().concat(ringSegments.shift())); + segments.push(ringSegments.filter(d3_geo_clipSegmentLength1)); + } + return clip; + }; + } + function d3_geo_clipSegmentLength1(segment) { + return segment.length > 1; + } + function d3_geo_clipBufferListener() { + var lines = [], line; + return { + lineStart: function() { + lines.push(line = []); + }, + point: function(λ, φ) { + line.push([ λ, φ ]); + }, + lineEnd: d3_noop, + buffer: function() { + var buffer = lines; + lines = []; + line = null; + return buffer; + }, + rejoin: function() { + if (lines.length > 1) lines.push(lines.pop().concat(lines.shift())); + } + }; + } + function d3_geo_clipSort(a, b) { + return ((a = a.x)[0] < 0 ? a[1] - halfπ - ε : halfπ - a[1]) - ((b = b.x)[0] < 0 ? b[1] - halfπ - ε : halfπ - b[1]); + } + function d3_geo_pointInPolygon(point, polygon) { + var meridian = point[0], parallel = point[1], meridianNormal = [ Math.sin(meridian), -Math.cos(meridian), 0 ], polarAngle = 0, winding = 0; + d3_geo_areaRingSum.reset(); + for (var i = 0, n = polygon.length; i < n; ++i) { + var ring = polygon[i], m = ring.length; + if (!m) continue; + var point0 = ring[0], λ0 = point0[0], φ0 = point0[1] / 2 + π / 4, sinφ0 = Math.sin(φ0), cosφ0 = Math.cos(φ0), j = 1; + while (true) { + if (j === m) j = 0; + point = ring[j]; + var λ = point[0], φ = point[1] / 2 + π / 4, sinφ = Math.sin(φ), cosφ = Math.cos(φ), dλ = λ - λ0, sdλ = dλ >= 0 ? 1 : -1, adλ = sdλ * dλ, antimeridian = adλ > π, k = sinφ0 * sinφ; + d3_geo_areaRingSum.add(Math.atan2(k * sdλ * Math.sin(adλ), cosφ0 * cosφ + k * Math.cos(adλ))); + polarAngle += antimeridian ? dλ + sdλ * τ : dλ; + if (antimeridian ^ λ0 >= meridian ^ λ >= meridian) { + var arc = d3_geo_cartesianCross(d3_geo_cartesian(point0), d3_geo_cartesian(point)); + d3_geo_cartesianNormalize(arc); + var intersection = d3_geo_cartesianCross(meridianNormal, arc); + d3_geo_cartesianNormalize(intersection); + var φarc = (antimeridian ^ dλ >= 0 ? -1 : 1) * d3_asin(intersection[2]); + if (parallel > φarc || parallel === φarc && (arc[0] || arc[1])) { + winding += antimeridian ^ dλ >= 0 ? 1 : -1; + } + } + if (!j++) break; + λ0 = λ, sinφ0 = sinφ, cosφ0 = cosφ, point0 = point; + } + } + return (polarAngle < -ε || polarAngle < ε && d3_geo_areaRingSum < 0) ^ winding & 1; + } + var d3_geo_clipAntimeridian = d3_geo_clip(d3_true, d3_geo_clipAntimeridianLine, d3_geo_clipAntimeridianInterpolate, [ -π, -π / 2 ]); + function d3_geo_clipAntimeridianLine(listener) { + var λ0 = NaN, φ0 = NaN, sλ0 = NaN, clean; + return { + lineStart: function() { + listener.lineStart(); + clean = 1; + }, + point: function(λ1, φ1) { + var sλ1 = λ1 > 0 ? π : -π, dλ = abs(λ1 - λ0); + if (abs(dλ - π) < ε) { + listener.point(λ0, φ0 = (φ0 + φ1) / 2 > 0 ? halfπ : -halfπ); + listener.point(sλ0, φ0); + listener.lineEnd(); + listener.lineStart(); + listener.point(sλ1, φ0); + listener.point(λ1, φ0); + clean = 0; + } else if (sλ0 !== sλ1 && dλ >= π) { + if (abs(λ0 - sλ0) < ε) λ0 -= sλ0 * ε; + if (abs(λ1 - sλ1) < ε) λ1 -= sλ1 * ε; + φ0 = d3_geo_clipAntimeridianIntersect(λ0, φ0, λ1, φ1); + listener.point(sλ0, φ0); + listener.lineEnd(); + listener.lineStart(); + listener.point(sλ1, φ0); + clean = 0; + } + listener.point(λ0 = λ1, φ0 = φ1); + sλ0 = sλ1; + }, + lineEnd: function() { + listener.lineEnd(); + λ0 = φ0 = NaN; + }, + clean: function() { + return 2 - clean; + } + }; + } + function d3_geo_clipAntimeridianIntersect(λ0, φ0, λ1, φ1) { + var cosφ0, cosφ1, sinλ0_λ1 = Math.sin(λ0 - λ1); + return abs(sinλ0_λ1) > ε ? Math.atan((Math.sin(φ0) * (cosφ1 = Math.cos(φ1)) * Math.sin(λ1) - Math.sin(φ1) * (cosφ0 = Math.cos(φ0)) * Math.sin(λ0)) / (cosφ0 * cosφ1 * sinλ0_λ1)) : (φ0 + φ1) / 2; + } + function d3_geo_clipAntimeridianInterpolate(from, to, direction, listener) { + var φ; + if (from == null) { + φ = direction * halfπ; + listener.point(-π, φ); + listener.point(0, φ); + listener.point(π, φ); + listener.point(π, 0); + listener.point(π, -φ); + listener.point(0, -φ); + listener.point(-π, -φ); + listener.point(-π, 0); + listener.point(-π, φ); + } else if (abs(from[0] - to[0]) > ε) { + var s = from[0] < to[0] ? π : -π; + φ = direction * s / 2; + listener.point(-s, φ); + listener.point(0, φ); + listener.point(s, φ); + } else { + listener.point(to[0], to[1]); + } + } + function d3_geo_clipCircle(radius) { + var cr = Math.cos(radius), smallRadius = cr > 0, notHemisphere = abs(cr) > ε, interpolate = d3_geo_circleInterpolate(radius, 6 * d3_radians); + return d3_geo_clip(visible, clipLine, interpolate, smallRadius ? [ 0, -radius ] : [ -π, radius - π ]); + function visible(λ, φ) { + return Math.cos(λ) * Math.cos(φ) > cr; + } + function clipLine(listener) { + var point0, c0, v0, v00, clean; + return { + lineStart: function() { + v00 = v0 = false; + clean = 1; + }, + point: function(λ, φ) { + var point1 = [ λ, φ ], point2, v = visible(λ, φ), c = smallRadius ? v ? 0 : code(λ, φ) : v ? code(λ + (λ < 0 ? π : -π), φ) : 0; + if (!point0 && (v00 = v0 = v)) listener.lineStart(); + if (v !== v0) { + point2 = intersect(point0, point1); + if (d3_geo_sphericalEqual(point0, point2) || d3_geo_sphericalEqual(point1, point2)) { + point1[0] += ε; + point1[1] += ε; + v = visible(point1[0], point1[1]); + } + } + if (v !== v0) { + clean = 0; + if (v) { + listener.lineStart(); + point2 = intersect(point1, point0); + listener.point(point2[0], point2[1]); + } else { + point2 = intersect(point0, point1); + listener.point(point2[0], point2[1]); + listener.lineEnd(); + } + point0 = point2; + } else if (notHemisphere && point0 && smallRadius ^ v) { + var t; + if (!(c & c0) && (t = intersect(point1, point0, true))) { + clean = 0; + if (smallRadius) { + listener.lineStart(); + listener.point(t[0][0], t[0][1]); + listener.point(t[1][0], t[1][1]); + listener.lineEnd(); + } else { + listener.point(t[1][0], t[1][1]); + listener.lineEnd(); + listener.lineStart(); + listener.point(t[0][0], t[0][1]); + } + } + } + if (v && (!point0 || !d3_geo_sphericalEqual(point0, point1))) { + listener.point(point1[0], point1[1]); + } + point0 = point1, v0 = v, c0 = c; + }, + lineEnd: function() { + if (v0) listener.lineEnd(); + point0 = null; + }, + clean: function() { + return clean | (v00 && v0) << 1; + } + }; + } + function intersect(a, b, two) { + var pa = d3_geo_cartesian(a), pb = d3_geo_cartesian(b); + var n1 = [ 1, 0, 0 ], n2 = d3_geo_cartesianCross(pa, pb), n2n2 = d3_geo_cartesianDot(n2, n2), n1n2 = n2[0], determinant = n2n2 - n1n2 * n1n2; + if (!determinant) return !two && a; + var c1 = cr * n2n2 / determinant, c2 = -cr * n1n2 / determinant, n1xn2 = d3_geo_cartesianCross(n1, n2), A = d3_geo_cartesianScale(n1, c1), B = d3_geo_cartesianScale(n2, c2); + d3_geo_cartesianAdd(A, B); + var u = n1xn2, w = d3_geo_cartesianDot(A, u), uu = d3_geo_cartesianDot(u, u), t2 = w * w - uu * (d3_geo_cartesianDot(A, A) - 1); + if (t2 < 0) return; + var t = Math.sqrt(t2), q = d3_geo_cartesianScale(u, (-w - t) / uu); + d3_geo_cartesianAdd(q, A); + q = d3_geo_spherical(q); + if (!two) return q; + var λ0 = a[0], λ1 = b[0], φ0 = a[1], φ1 = b[1], z; + if (λ1 < λ0) z = λ0, λ0 = λ1, λ1 = z; + var δλ = λ1 - λ0, polar = abs(δλ - π) < ε, meridian = polar || δλ < ε; + if (!polar && φ1 < φ0) z = φ0, φ0 = φ1, φ1 = z; + if (meridian ? polar ? φ0 + φ1 > 0 ^ q[1] < (abs(q[0] - λ0) < ε ? φ0 : φ1) : φ0 <= q[1] && q[1] <= φ1 : δλ > π ^ (λ0 <= q[0] && q[0] <= λ1)) { + var q1 = d3_geo_cartesianScale(u, (-w + t) / uu); + d3_geo_cartesianAdd(q1, A); + return [ q, d3_geo_spherical(q1) ]; + } + } + function code(λ, φ) { + var r = smallRadius ? radius : π - radius, code = 0; + if (λ < -r) code |= 1; else if (λ > r) code |= 2; + if (φ < -r) code |= 4; else if (φ > r) code |= 8; + return code; + } + } + function d3_geom_clipLine(x0, y0, x1, y1) { + return function(line) { + var a = line.a, b = line.b, ax = a.x, ay = a.y, bx = b.x, by = b.y, t0 = 0, t1 = 1, dx = bx - ax, dy = by - ay, r; + r = x0 - ax; + if (!dx && r > 0) return; + r /= dx; + if (dx < 0) { + if (r < t0) return; + if (r < t1) t1 = r; + } else if (dx > 0) { + if (r > t1) return; + if (r > t0) t0 = r; + } + r = x1 - ax; + if (!dx && r < 0) return; + r /= dx; + if (dx < 0) { + if (r > t1) return; + if (r > t0) t0 = r; + } else if (dx > 0) { + if (r < t0) return; + if (r < t1) t1 = r; + } + r = y0 - ay; + if (!dy && r > 0) return; + r /= dy; + if (dy < 0) { + if (r < t0) return; + if (r < t1) t1 = r; + } else if (dy > 0) { + if (r > t1) return; + if (r > t0) t0 = r; + } + r = y1 - ay; + if (!dy && r < 0) return; + r /= dy; + if (dy < 0) { + if (r > t1) return; + if (r > t0) t0 = r; + } else if (dy > 0) { + if (r < t0) return; + if (r < t1) t1 = r; + } + if (t0 > 0) line.a = { + x: ax + t0 * dx, + y: ay + t0 * dy + }; + if (t1 < 1) line.b = { + x: ax + t1 * dx, + y: ay + t1 * dy + }; + return line; + }; + } + var d3_geo_clipExtentMAX = 1e9; + d3.geo.clipExtent = function() { + var x0, y0, x1, y1, stream, clip, clipExtent = { + stream: function(output) { + if (stream) stream.valid = false; + stream = clip(output); + stream.valid = true; + return stream; + }, + extent: function(_) { + if (!arguments.length) return [ [ x0, y0 ], [ x1, y1 ] ]; + clip = d3_geo_clipExtent(x0 = +_[0][0], y0 = +_[0][1], x1 = +_[1][0], y1 = +_[1][1]); + if (stream) stream.valid = false, stream = null; + return clipExtent; + } + }; + return clipExtent.extent([ [ 0, 0 ], [ 960, 500 ] ]); + }; + function d3_geo_clipExtent(x0, y0, x1, y1) { + return function(listener) { + var listener_ = listener, bufferListener = d3_geo_clipBufferListener(), clipLine = d3_geom_clipLine(x0, y0, x1, y1), segments, polygon, ring; + var clip = { + point: point, + lineStart: lineStart, + lineEnd: lineEnd, + polygonStart: function() { + listener = bufferListener; + segments = []; + polygon = []; + clean = true; + }, + polygonEnd: function() { + listener = listener_; + segments = d3.merge(segments); + var clipStartInside = insidePolygon([ x0, y1 ]), inside = clean && clipStartInside, visible = segments.length; + if (inside || visible) { + listener.polygonStart(); + if (inside) { + listener.lineStart(); + interpolate(null, null, 1, listener); + listener.lineEnd(); + } + if (visible) { + d3_geo_clipPolygon(segments, compare, clipStartInside, interpolate, listener); + } + listener.polygonEnd(); + } + segments = polygon = ring = null; + } + }; + function insidePolygon(p) { + var wn = 0, n = polygon.length, y = p[1]; + for (var i = 0; i < n; ++i) { + for (var j = 1, v = polygon[i], m = v.length, a = v[0], b; j < m; ++j) { + b = v[j]; + if (a[1] <= y) { + if (b[1] > y && d3_cross2d(a, b, p) > 0) ++wn; + } else { + if (b[1] <= y && d3_cross2d(a, b, p) < 0) --wn; + } + a = b; + } + } + return wn !== 0; + } + function interpolate(from, to, direction, listener) { + var a = 0, a1 = 0; + if (from == null || (a = corner(from, direction)) !== (a1 = corner(to, direction)) || comparePoints(from, to) < 0 ^ direction > 0) { + do { + listener.point(a === 0 || a === 3 ? x0 : x1, a > 1 ? y1 : y0); + } while ((a = (a + direction + 4) % 4) !== a1); + } else { + listener.point(to[0], to[1]); + } + } + function pointVisible(x, y) { + return x0 <= x && x <= x1 && y0 <= y && y <= y1; + } + function point(x, y) { + if (pointVisible(x, y)) listener.point(x, y); + } + var x__, y__, v__, x_, y_, v_, first, clean; + function lineStart() { + clip.point = linePoint; + if (polygon) polygon.push(ring = []); + first = true; + v_ = false; + x_ = y_ = NaN; + } + function lineEnd() { + if (segments) { + linePoint(x__, y__); + if (v__ && v_) bufferListener.rejoin(); + segments.push(bufferListener.buffer()); + } + clip.point = point; + if (v_) listener.lineEnd(); + } + function linePoint(x, y) { + x = Math.max(-d3_geo_clipExtentMAX, Math.min(d3_geo_clipExtentMAX, x)); + y = Math.max(-d3_geo_clipExtentMAX, Math.min(d3_geo_clipExtentMAX, y)); + var v = pointVisible(x, y); + if (polygon) ring.push([ x, y ]); + if (first) { + x__ = x, y__ = y, v__ = v; + first = false; + if (v) { + listener.lineStart(); + listener.point(x, y); + } + } else { + if (v && v_) listener.point(x, y); else { + var l = { + a: { + x: x_, + y: y_ + }, + b: { + x: x, + y: y + } + }; + if (clipLine(l)) { + if (!v_) { + listener.lineStart(); + listener.point(l.a.x, l.a.y); + } + listener.point(l.b.x, l.b.y); + if (!v) listener.lineEnd(); + clean = false; + } else if (v) { + listener.lineStart(); + listener.point(x, y); + clean = false; + } + } + } + x_ = x, y_ = y, v_ = v; + } + return clip; + }; + function corner(p, direction) { + return abs(p[0] - x0) < ε ? direction > 0 ? 0 : 3 : abs(p[0] - x1) < ε ? direction > 0 ? 2 : 1 : abs(p[1] - y0) < ε ? direction > 0 ? 1 : 0 : direction > 0 ? 3 : 2; + } + function compare(a, b) { + return comparePoints(a.x, b.x); + } + function comparePoints(a, b) { + var ca = corner(a, 1), cb = corner(b, 1); + return ca !== cb ? ca - cb : ca === 0 ? b[1] - a[1] : ca === 1 ? a[0] - b[0] : ca === 2 ? a[1] - b[1] : b[0] - a[0]; + } + } + function d3_geo_compose(a, b) { + function compose(x, y) { + return x = a(x, y), b(x[0], x[1]); + } + if (a.invert && b.invert) compose.invert = function(x, y) { + return x = b.invert(x, y), x && a.invert(x[0], x[1]); + }; + return compose; + } + function d3_geo_conic(projectAt) { + var φ0 = 0, φ1 = π / 3, m = d3_geo_projectionMutator(projectAt), p = m(φ0, φ1); + p.parallels = function(_) { + if (!arguments.length) return [ φ0 / π * 180, φ1 / π * 180 ]; + return m(φ0 = _[0] * π / 180, φ1 = _[1] * π / 180); + }; + return p; + } + function d3_geo_conicEqualArea(φ0, φ1) { + var sinφ0 = Math.sin(φ0), n = (sinφ0 + Math.sin(φ1)) / 2, C = 1 + sinφ0 * (2 * n - sinφ0), ρ0 = Math.sqrt(C) / n; + function forward(λ, φ) { + var ρ = Math.sqrt(C - 2 * n * Math.sin(φ)) / n; + return [ ρ * Math.sin(λ *= n), ρ0 - ρ * Math.cos(λ) ]; + } + forward.invert = function(x, y) { + var ρ0_y = ρ0 - y; + return [ Math.atan2(x, ρ0_y) / n, d3_asin((C - (x * x + ρ0_y * ρ0_y) * n * n) / (2 * n)) ]; + }; + return forward; + } + (d3.geo.conicEqualArea = function() { + return d3_geo_conic(d3_geo_conicEqualArea); + }).raw = d3_geo_conicEqualArea; + d3.geo.albers = function() { + return d3.geo.conicEqualArea().rotate([ 96, 0 ]).center([ -.6, 38.7 ]).parallels([ 29.5, 45.5 ]).scale(1070); + }; + d3.geo.albersUsa = function() { + var lower48 = d3.geo.albers(); + var alaska = d3.geo.conicEqualArea().rotate([ 154, 0 ]).center([ -2, 58.5 ]).parallels([ 55, 65 ]); + var hawaii = d3.geo.conicEqualArea().rotate([ 157, 0 ]).center([ -3, 19.9 ]).parallels([ 8, 18 ]); + var point, pointStream = { + point: function(x, y) { + point = [ x, y ]; + } + }, lower48Point, alaskaPoint, hawaiiPoint; + function albersUsa(coordinates) { + var x = coordinates[0], y = coordinates[1]; + point = null; + (lower48Point(x, y), point) || (alaskaPoint(x, y), point) || hawaiiPoint(x, y); + return point; + } + albersUsa.invert = function(coordinates) { + var k = lower48.scale(), t = lower48.translate(), x = (coordinates[0] - t[0]) / k, y = (coordinates[1] - t[1]) / k; + return (y >= .12 && y < .234 && x >= -.425 && x < -.214 ? alaska : y >= .166 && y < .234 && x >= -.214 && x < -.115 ? hawaii : lower48).invert(coordinates); + }; + albersUsa.stream = function(stream) { + var lower48Stream = lower48.stream(stream), alaskaStream = alaska.stream(stream), hawaiiStream = hawaii.stream(stream); + return { + point: function(x, y) { + lower48Stream.point(x, y); + alaskaStream.point(x, y); + hawaiiStream.point(x, y); + }, + sphere: function() { + lower48Stream.sphere(); + alaskaStream.sphere(); + hawaiiStream.sphere(); + }, + lineStart: function() { + lower48Stream.lineStart(); + alaskaStream.lineStart(); + hawaiiStream.lineStart(); + }, + lineEnd: function() { + lower48Stream.lineEnd(); + alaskaStream.lineEnd(); + hawaiiStream.lineEnd(); + }, + polygonStart: function() { + lower48Stream.polygonStart(); + alaskaStream.polygonStart(); + hawaiiStream.polygonStart(); + }, + polygonEnd: function() { + lower48Stream.polygonEnd(); + alaskaStream.polygonEnd(); + hawaiiStream.polygonEnd(); + } + }; + }; + albersUsa.precision = function(_) { + if (!arguments.length) return lower48.precision(); + lower48.precision(_); + alaska.precision(_); + hawaii.precision(_); + return albersUsa; + }; + albersUsa.scale = function(_) { + if (!arguments.length) return lower48.scale(); + lower48.scale(_); + alaska.scale(_ * .35); + hawaii.scale(_); + return albersUsa.translate(lower48.translate()); + }; + albersUsa.translate = function(_) { + if (!arguments.length) return lower48.translate(); + var k = lower48.scale(), x = +_[0], y = +_[1]; + lower48Point = lower48.translate(_).clipExtent([ [ x - .455 * k, y - .238 * k ], [ x + .455 * k, y + .238 * k ] ]).stream(pointStream).point; + alaskaPoint = alaska.translate([ x - .307 * k, y + .201 * k ]).clipExtent([ [ x - .425 * k + ε, y + .12 * k + ε ], [ x - .214 * k - ε, y + .234 * k - ε ] ]).stream(pointStream).point; + hawaiiPoint = hawaii.translate([ x - .205 * k, y + .212 * k ]).clipExtent([ [ x - .214 * k + ε, y + .166 * k + ε ], [ x - .115 * k - ε, y + .234 * k - ε ] ]).stream(pointStream).point; + return albersUsa; + }; + return albersUsa.scale(1070); + }; + var d3_geo_pathAreaSum, d3_geo_pathAreaPolygon, d3_geo_pathArea = { + point: d3_noop, + lineStart: d3_noop, + lineEnd: d3_noop, + polygonStart: function() { + d3_geo_pathAreaPolygon = 0; + d3_geo_pathArea.lineStart = d3_geo_pathAreaRingStart; + }, + polygonEnd: function() { + d3_geo_pathArea.lineStart = d3_geo_pathArea.lineEnd = d3_geo_pathArea.point = d3_noop; + d3_geo_pathAreaSum += abs(d3_geo_pathAreaPolygon / 2); + } + }; + function d3_geo_pathAreaRingStart() { + var x00, y00, x0, y0; + d3_geo_pathArea.point = function(x, y) { + d3_geo_pathArea.point = nextPoint; + x00 = x0 = x, y00 = y0 = y; + }; + function nextPoint(x, y) { + d3_geo_pathAreaPolygon += y0 * x - x0 * y; + x0 = x, y0 = y; + } + d3_geo_pathArea.lineEnd = function() { + nextPoint(x00, y00); + }; + } + var d3_geo_pathBoundsX0, d3_geo_pathBoundsY0, d3_geo_pathBoundsX1, d3_geo_pathBoundsY1; + var d3_geo_pathBounds = { + point: d3_geo_pathBoundsPoint, + lineStart: d3_noop, + lineEnd: d3_noop, + polygonStart: d3_noop, + polygonEnd: d3_noop + }; + function d3_geo_pathBoundsPoint(x, y) { + if (x < d3_geo_pathBoundsX0) d3_geo_pathBoundsX0 = x; + if (x > d3_geo_pathBoundsX1) d3_geo_pathBoundsX1 = x; + if (y < d3_geo_pathBoundsY0) d3_geo_pathBoundsY0 = y; + if (y > d3_geo_pathBoundsY1) d3_geo_pathBoundsY1 = y; + } + function d3_geo_pathBuffer() { + var pointCircle = d3_geo_pathBufferCircle(4.5), buffer = []; + var stream = { + point: point, + lineStart: function() { + stream.point = pointLineStart; + }, + lineEnd: lineEnd, + polygonStart: function() { + stream.lineEnd = lineEndPolygon; + }, + polygonEnd: function() { + stream.lineEnd = lineEnd; + stream.point = point; + }, + pointRadius: function(_) { + pointCircle = d3_geo_pathBufferCircle(_); + return stream; + }, + result: function() { + if (buffer.length) { + var result = buffer.join(""); + buffer = []; + return result; + } + } + }; + function point(x, y) { + buffer.push("M", x, ",", y, pointCircle); + } + function pointLineStart(x, y) { + buffer.push("M", x, ",", y); + stream.point = pointLine; + } + function pointLine(x, y) { + buffer.push("L", x, ",", y); + } + function lineEnd() { + stream.point = point; + } + function lineEndPolygon() { + buffer.push("Z"); + } + return stream; + } + function d3_geo_pathBufferCircle(radius) { + return "m0," + radius + "a" + radius + "," + radius + " 0 1,1 0," + -2 * radius + "a" + radius + "," + radius + " 0 1,1 0," + 2 * radius + "z"; + } + var d3_geo_pathCentroid = { + point: d3_geo_pathCentroidPoint, + lineStart: d3_geo_pathCentroidLineStart, + lineEnd: d3_geo_pathCentroidLineEnd, + polygonStart: function() { + d3_geo_pathCentroid.lineStart = d3_geo_pathCentroidRingStart; + }, + polygonEnd: function() { + d3_geo_pathCentroid.point = d3_geo_pathCentroidPoint; + d3_geo_pathCentroid.lineStart = d3_geo_pathCentroidLineStart; + d3_geo_pathCentroid.lineEnd = d3_geo_pathCentroidLineEnd; + } + }; + function d3_geo_pathCentroidPoint(x, y) { + d3_geo_centroidX0 += x; + d3_geo_centroidY0 += y; + ++d3_geo_centroidZ0; + } + function d3_geo_pathCentroidLineStart() { + var x0, y0; + d3_geo_pathCentroid.point = function(x, y) { + d3_geo_pathCentroid.point = nextPoint; + d3_geo_pathCentroidPoint(x0 = x, y0 = y); + }; + function nextPoint(x, y) { + var dx = x - x0, dy = y - y0, z = Math.sqrt(dx * dx + dy * dy); + d3_geo_centroidX1 += z * (x0 + x) / 2; + d3_geo_centroidY1 += z * (y0 + y) / 2; + d3_geo_centroidZ1 += z; + d3_geo_pathCentroidPoint(x0 = x, y0 = y); + } + } + function d3_geo_pathCentroidLineEnd() { + d3_geo_pathCentroid.point = d3_geo_pathCentroidPoint; + } + function d3_geo_pathCentroidRingStart() { + var x00, y00, x0, y0; + d3_geo_pathCentroid.point = function(x, y) { + d3_geo_pathCentroid.point = nextPoint; + d3_geo_pathCentroidPoint(x00 = x0 = x, y00 = y0 = y); + }; + function nextPoint(x, y) { + var dx = x - x0, dy = y - y0, z = Math.sqrt(dx * dx + dy * dy); + d3_geo_centroidX1 += z * (x0 + x) / 2; + d3_geo_centroidY1 += z * (y0 + y) / 2; + d3_geo_centroidZ1 += z; + z = y0 * x - x0 * y; + d3_geo_centroidX2 += z * (x0 + x); + d3_geo_centroidY2 += z * (y0 + y); + d3_geo_centroidZ2 += z * 3; + d3_geo_pathCentroidPoint(x0 = x, y0 = y); + } + d3_geo_pathCentroid.lineEnd = function() { + nextPoint(x00, y00); + }; + } + function d3_geo_pathContext(context) { + var pointRadius = 4.5; + var stream = { + point: point, + lineStart: function() { + stream.point = pointLineStart; + }, + lineEnd: lineEnd, + polygonStart: function() { + stream.lineEnd = lineEndPolygon; + }, + polygonEnd: function() { + stream.lineEnd = lineEnd; + stream.point = point; + }, + pointRadius: function(_) { + pointRadius = _; + return stream; + }, + result: d3_noop + }; + function point(x, y) { + context.moveTo(x, y); + context.arc(x, y, pointRadius, 0, τ); + } + function pointLineStart(x, y) { + context.moveTo(x, y); + stream.point = pointLine; + } + function pointLine(x, y) { + context.lineTo(x, y); + } + function lineEnd() { + stream.point = point; + } + function lineEndPolygon() { + context.closePath(); + } + return stream; + } + function d3_geo_resample(project) { + var δ2 = .5, cosMinDistance = Math.cos(30 * d3_radians), maxDepth = 16; + function resample(stream) { + return (maxDepth ? resampleRecursive : resampleNone)(stream); + } + function resampleNone(stream) { + return d3_geo_transformPoint(stream, function(x, y) { + x = project(x, y); + stream.point(x[0], x[1]); + }); + } + function resampleRecursive(stream) { + var λ00, φ00, x00, y00, a00, b00, c00, λ0, x0, y0, a0, b0, c0; + var resample = { + point: point, + lineStart: lineStart, + lineEnd: lineEnd, + polygonStart: function() { + stream.polygonStart(); + resample.lineStart = ringStart; + }, + polygonEnd: function() { + stream.polygonEnd(); + resample.lineStart = lineStart; + } + }; + function point(x, y) { + x = project(x, y); + stream.point(x[0], x[1]); + } + function lineStart() { + x0 = NaN; + resample.point = linePoint; + stream.lineStart(); + } + function linePoint(λ, φ) { + var c = d3_geo_cartesian([ λ, φ ]), p = project(λ, φ); + resampleLineTo(x0, y0, λ0, a0, b0, c0, x0 = p[0], y0 = p[1], λ0 = λ, a0 = c[0], b0 = c[1], c0 = c[2], maxDepth, stream); + stream.point(x0, y0); + } + function lineEnd() { + resample.point = point; + stream.lineEnd(); + } + function ringStart() { + lineStart(); + resample.point = ringPoint; + resample.lineEnd = ringEnd; + } + function ringPoint(λ, φ) { + linePoint(λ00 = λ, φ00 = φ), x00 = x0, y00 = y0, a00 = a0, b00 = b0, c00 = c0; + resample.point = linePoint; + } + function ringEnd() { + resampleLineTo(x0, y0, λ0, a0, b0, c0, x00, y00, λ00, a00, b00, c00, maxDepth, stream); + resample.lineEnd = lineEnd; + lineEnd(); + } + return resample; + } + function resampleLineTo(x0, y0, λ0, a0, b0, c0, x1, y1, λ1, a1, b1, c1, depth, stream) { + var dx = x1 - x0, dy = y1 - y0, d2 = dx * dx + dy * dy; + if (d2 > 4 * δ2 && depth--) { + var a = a0 + a1, b = b0 + b1, c = c0 + c1, m = Math.sqrt(a * a + b * b + c * c), φ2 = Math.asin(c /= m), λ2 = abs(abs(c) - 1) < ε || abs(λ0 - λ1) < ε ? (λ0 + λ1) / 2 : Math.atan2(b, a), p = project(λ2, φ2), x2 = p[0], y2 = p[1], dx2 = x2 - x0, dy2 = y2 - y0, dz = dy * dx2 - dx * dy2; + if (dz * dz / d2 > δ2 || abs((dx * dx2 + dy * dy2) / d2 - .5) > .3 || a0 * a1 + b0 * b1 + c0 * c1 < cosMinDistance) { + resampleLineTo(x0, y0, λ0, a0, b0, c0, x2, y2, λ2, a /= m, b /= m, c, depth, stream); + stream.point(x2, y2); + resampleLineTo(x2, y2, λ2, a, b, c, x1, y1, λ1, a1, b1, c1, depth, stream); + } + } + } + resample.precision = function(_) { + if (!arguments.length) return Math.sqrt(δ2); + maxDepth = (δ2 = _ * _) > 0 && 16; + return resample; + }; + return resample; + } + d3.geo.path = function() { + var pointRadius = 4.5, projection, context, projectStream, contextStream, cacheStream; + function path(object) { + if (object) { + if (typeof pointRadius === "function") contextStream.pointRadius(+pointRadius.apply(this, arguments)); + if (!cacheStream || !cacheStream.valid) cacheStream = projectStream(contextStream); + d3.geo.stream(object, cacheStream); + } + return contextStream.result(); + } + path.area = function(object) { + d3_geo_pathAreaSum = 0; + d3.geo.stream(object, projectStream(d3_geo_pathArea)); + return d3_geo_pathAreaSum; + }; + path.centroid = function(object) { + d3_geo_centroidX0 = d3_geo_centroidY0 = d3_geo_centroidZ0 = d3_geo_centroidX1 = d3_geo_centroidY1 = d3_geo_centroidZ1 = d3_geo_centroidX2 = d3_geo_centroidY2 = d3_geo_centroidZ2 = 0; + d3.geo.stream(object, projectStream(d3_geo_pathCentroid)); + return d3_geo_centroidZ2 ? [ d3_geo_centroidX2 / d3_geo_centroidZ2, d3_geo_centroidY2 / d3_geo_centroidZ2 ] : d3_geo_centroidZ1 ? [ d3_geo_centroidX1 / d3_geo_centroidZ1, d3_geo_centroidY1 / d3_geo_centroidZ1 ] : d3_geo_centroidZ0 ? [ d3_geo_centroidX0 / d3_geo_centroidZ0, d3_geo_centroidY0 / d3_geo_centroidZ0 ] : [ NaN, NaN ]; + }; + path.bounds = function(object) { + d3_geo_pathBoundsX1 = d3_geo_pathBoundsY1 = -(d3_geo_pathBoundsX0 = d3_geo_pathBoundsY0 = Infinity); + d3.geo.stream(object, projectStream(d3_geo_pathBounds)); + return [ [ d3_geo_pathBoundsX0, d3_geo_pathBoundsY0 ], [ d3_geo_pathBoundsX1, d3_geo_pathBoundsY1 ] ]; + }; + path.projection = function(_) { + if (!arguments.length) return projection; + projectStream = (projection = _) ? _.stream || d3_geo_pathProjectStream(_) : d3_identity; + return reset(); + }; + path.context = function(_) { + if (!arguments.length) return context; + contextStream = (context = _) == null ? new d3_geo_pathBuffer() : new d3_geo_pathContext(_); + if (typeof pointRadius !== "function") contextStream.pointRadius(pointRadius); + return reset(); + }; + path.pointRadius = function(_) { + if (!arguments.length) return pointRadius; + pointRadius = typeof _ === "function" ? _ : (contextStream.pointRadius(+_), +_); + return path; + }; + function reset() { + cacheStream = null; + return path; + } + return path.projection(d3.geo.albersUsa()).context(null); + }; + function d3_geo_pathProjectStream(project) { + var resample = d3_geo_resample(function(x, y) { + return project([ x * d3_degrees, y * d3_degrees ]); + }); + return function(stream) { + return d3_geo_projectionRadians(resample(stream)); + }; + } + d3.geo.transform = function(methods) { + return { + stream: function(stream) { + var transform = new d3_geo_transform(stream); + for (var k in methods) transform[k] = methods[k]; + return transform; + } + }; + }; + function d3_geo_transform(stream) { + this.stream = stream; + } + d3_geo_transform.prototype = { + point: function(x, y) { + this.stream.point(x, y); + }, + sphere: function() { + this.stream.sphere(); + }, + lineStart: function() { + this.stream.lineStart(); + }, + lineEnd: function() { + this.stream.lineEnd(); + }, + polygonStart: function() { + this.stream.polygonStart(); + }, + polygonEnd: function() { + this.stream.polygonEnd(); + } + }; + function d3_geo_transformPoint(stream, point) { + return { + point: point, + sphere: function() { + stream.sphere(); + }, + lineStart: function() { + stream.lineStart(); + }, + lineEnd: function() { + stream.lineEnd(); + }, + polygonStart: function() { + stream.polygonStart(); + }, + polygonEnd: function() { + stream.polygonEnd(); + } + }; + } + d3.geo.projection = d3_geo_projection; + d3.geo.projectionMutator = d3_geo_projectionMutator; + function d3_geo_projection(project) { + return d3_geo_projectionMutator(function() { + return project; + })(); + } + function d3_geo_projectionMutator(projectAt) { + var project, rotate, projectRotate, projectResample = d3_geo_resample(function(x, y) { + x = project(x, y); + return [ x[0] * k + δx, δy - x[1] * k ]; + }), k = 150, x = 480, y = 250, λ = 0, φ = 0, δλ = 0, δφ = 0, δγ = 0, δx, δy, preclip = d3_geo_clipAntimeridian, postclip = d3_identity, clipAngle = null, clipExtent = null, stream; + function projection(point) { + point = projectRotate(point[0] * d3_radians, point[1] * d3_radians); + return [ point[0] * k + δx, δy - point[1] * k ]; + } + function invert(point) { + point = projectRotate.invert((point[0] - δx) / k, (δy - point[1]) / k); + return point && [ point[0] * d3_degrees, point[1] * d3_degrees ]; + } + projection.stream = function(output) { + if (stream) stream.valid = false; + stream = d3_geo_projectionRadians(preclip(rotate, projectResample(postclip(output)))); + stream.valid = true; + return stream; + }; + projection.clipAngle = function(_) { + if (!arguments.length) return clipAngle; + preclip = _ == null ? (clipAngle = _, d3_geo_clipAntimeridian) : d3_geo_clipCircle((clipAngle = +_) * d3_radians); + return invalidate(); + }; + projection.clipExtent = function(_) { + if (!arguments.length) return clipExtent; + clipExtent = _; + postclip = _ ? d3_geo_clipExtent(_[0][0], _[0][1], _[1][0], _[1][1]) : d3_identity; + return invalidate(); + }; + projection.scale = function(_) { + if (!arguments.length) return k; + k = +_; + return reset(); + }; + projection.translate = function(_) { + if (!arguments.length) return [ x, y ]; + x = +_[0]; + y = +_[1]; + return reset(); + }; + projection.center = function(_) { + if (!arguments.length) return [ λ * d3_degrees, φ * d3_degrees ]; + λ = _[0] % 360 * d3_radians; + φ = _[1] % 360 * d3_radians; + return reset(); + }; + projection.rotate = function(_) { + if (!arguments.length) return [ δλ * d3_degrees, δφ * d3_degrees, δγ * d3_degrees ]; + δλ = _[0] % 360 * d3_radians; + δφ = _[1] % 360 * d3_radians; + δγ = _.length > 2 ? _[2] % 360 * d3_radians : 0; + return reset(); + }; + d3.rebind(projection, projectResample, "precision"); + function reset() { + projectRotate = d3_geo_compose(rotate = d3_geo_rotation(δλ, δφ, δγ), project); + var center = project(λ, φ); + δx = x - center[0] * k; + δy = y + center[1] * k; + return invalidate(); + } + function invalidate() { + if (stream) stream.valid = false, stream = null; + return projection; + } + return function() { + project = projectAt.apply(this, arguments); + projection.invert = project.invert && invert; + return reset(); + }; + } + function d3_geo_projectionRadians(stream) { + return d3_geo_transformPoint(stream, function(x, y) { + stream.point(x * d3_radians, y * d3_radians); + }); + } + function d3_geo_equirectangular(λ, φ) { + return [ λ, φ ]; + } + (d3.geo.equirectangular = function() { + return d3_geo_projection(d3_geo_equirectangular); + }).raw = d3_geo_equirectangular.invert = d3_geo_equirectangular; + d3.geo.rotation = function(rotate) { + rotate = d3_geo_rotation(rotate[0] % 360 * d3_radians, rotate[1] * d3_radians, rotate.length > 2 ? rotate[2] * d3_radians : 0); + function forward(coordinates) { + coordinates = rotate(coordinates[0] * d3_radians, coordinates[1] * d3_radians); + return coordinates[0] *= d3_degrees, coordinates[1] *= d3_degrees, coordinates; + } + forward.invert = function(coordinates) { + coordinates = rotate.invert(coordinates[0] * d3_radians, coordinates[1] * d3_radians); + return coordinates[0] *= d3_degrees, coordinates[1] *= d3_degrees, coordinates; + }; + return forward; + }; + function d3_geo_identityRotation(λ, φ) { + return [ λ > π ? λ - τ : λ < -π ? λ + τ : λ, φ ]; + } + d3_geo_identityRotation.invert = d3_geo_equirectangular; + function d3_geo_rotation(δλ, δφ, δγ) { + return δλ ? δφ || δγ ? d3_geo_compose(d3_geo_rotationλ(δλ), d3_geo_rotationφγ(δφ, δγ)) : d3_geo_rotationλ(δλ) : δφ || δγ ? d3_geo_rotationφγ(δφ, δγ) : d3_geo_identityRotation; + } + function d3_geo_forwardRotationλ(δλ) { + return function(λ, φ) { + return λ += δλ, [ λ > π ? λ - τ : λ < -π ? λ + τ : λ, φ ]; + }; + } + function d3_geo_rotationλ(δλ) { + var rotation = d3_geo_forwardRotationλ(δλ); + rotation.invert = d3_geo_forwardRotationλ(-δλ); + return rotation; + } + function d3_geo_rotationφγ(δφ, δγ) { + var cosδφ = Math.cos(δφ), sinδφ = Math.sin(δφ), cosδγ = Math.cos(δγ), sinδγ = Math.sin(δγ); + function rotation(λ, φ) { + var cosφ = Math.cos(φ), x = Math.cos(λ) * cosφ, y = Math.sin(λ) * cosφ, z = Math.sin(φ), k = z * cosδφ + x * sinδφ; + return [ Math.atan2(y * cosδγ - k * sinδγ, x * cosδφ - z * sinδφ), d3_asin(k * cosδγ + y * sinδγ) ]; + } + rotation.invert = function(λ, φ) { + var cosφ = Math.cos(φ), x = Math.cos(λ) * cosφ, y = Math.sin(λ) * cosφ, z = Math.sin(φ), k = z * cosδγ - y * sinδγ; + return [ Math.atan2(y * cosδγ + z * sinδγ, x * cosδφ + k * sinδφ), d3_asin(k * cosδφ - x * sinδφ) ]; + }; + return rotation; + } + d3.geo.circle = function() { + var origin = [ 0, 0 ], angle, precision = 6, interpolate; + function circle() { + var center = typeof origin === "function" ? origin.apply(this, arguments) : origin, rotate = d3_geo_rotation(-center[0] * d3_radians, -center[1] * d3_radians, 0).invert, ring = []; + interpolate(null, null, 1, { + point: function(x, y) { + ring.push(x = rotate(x, y)); + x[0] *= d3_degrees, x[1] *= d3_degrees; + } + }); + return { + type: "Polygon", + coordinates: [ ring ] + }; + } + circle.origin = function(x) { + if (!arguments.length) return origin; + origin = x; + return circle; + }; + circle.angle = function(x) { + if (!arguments.length) return angle; + interpolate = d3_geo_circleInterpolate((angle = +x) * d3_radians, precision * d3_radians); + return circle; + }; + circle.precision = function(_) { + if (!arguments.length) return precision; + interpolate = d3_geo_circleInterpolate(angle * d3_radians, (precision = +_) * d3_radians); + return circle; + }; + return circle.angle(90); + }; + function d3_geo_circleInterpolate(radius, precision) { + var cr = Math.cos(radius), sr = Math.sin(radius); + return function(from, to, direction, listener) { + var step = direction * precision; + if (from != null) { + from = d3_geo_circleAngle(cr, from); + to = d3_geo_circleAngle(cr, to); + if (direction > 0 ? from < to : from > to) from += direction * τ; + } else { + from = radius + direction * τ; + to = radius - .5 * step; + } + for (var point, t = from; direction > 0 ? t > to : t < to; t -= step) { + listener.point((point = d3_geo_spherical([ cr, -sr * Math.cos(t), -sr * Math.sin(t) ]))[0], point[1]); + } + }; + } + function d3_geo_circleAngle(cr, point) { + var a = d3_geo_cartesian(point); + a[0] -= cr; + d3_geo_cartesianNormalize(a); + var angle = d3_acos(-a[1]); + return ((-a[2] < 0 ? -angle : angle) + 2 * Math.PI - ε) % (2 * Math.PI); + } + d3.geo.distance = function(a, b) { + var Δλ = (b[0] - a[0]) * d3_radians, φ0 = a[1] * d3_radians, φ1 = b[1] * d3_radians, sinΔλ = Math.sin(Δλ), cosΔλ = Math.cos(Δλ), sinφ0 = Math.sin(φ0), cosφ0 = Math.cos(φ0), sinφ1 = Math.sin(φ1), cosφ1 = Math.cos(φ1), t; + return Math.atan2(Math.sqrt((t = cosφ1 * sinΔλ) * t + (t = cosφ0 * sinφ1 - sinφ0 * cosφ1 * cosΔλ) * t), sinφ0 * sinφ1 + cosφ0 * cosφ1 * cosΔλ); + }; + d3.geo.graticule = function() { + var x1, x0, X1, X0, y1, y0, Y1, Y0, dx = 10, dy = dx, DX = 90, DY = 360, x, y, X, Y, precision = 2.5; + function graticule() { + return { + type: "MultiLineString", + coordinates: lines() + }; + } + function lines() { + return d3.range(Math.ceil(X0 / DX) * DX, X1, DX).map(X).concat(d3.range(Math.ceil(Y0 / DY) * DY, Y1, DY).map(Y)).concat(d3.range(Math.ceil(x0 / dx) * dx, x1, dx).filter(function(x) { + return abs(x % DX) > ε; + }).map(x)).concat(d3.range(Math.ceil(y0 / dy) * dy, y1, dy).filter(function(y) { + return abs(y % DY) > ε; + }).map(y)); + } + graticule.lines = function() { + return lines().map(function(coordinates) { + return { + type: "LineString", + coordinates: coordinates + }; + }); + }; + graticule.outline = function() { + return { + type: "Polygon", + coordinates: [ X(X0).concat(Y(Y1).slice(1), X(X1).reverse().slice(1), Y(Y0).reverse().slice(1)) ] + }; + }; + graticule.extent = function(_) { + if (!arguments.length) return graticule.minorExtent(); + return graticule.majorExtent(_).minorExtent(_); + }; + graticule.majorExtent = function(_) { + if (!arguments.length) return [ [ X0, Y0 ], [ X1, Y1 ] ]; + X0 = +_[0][0], X1 = +_[1][0]; + Y0 = +_[0][1], Y1 = +_[1][1]; + if (X0 > X1) _ = X0, X0 = X1, X1 = _; + if (Y0 > Y1) _ = Y0, Y0 = Y1, Y1 = _; + return graticule.precision(precision); + }; + graticule.minorExtent = function(_) { + if (!arguments.length) return [ [ x0, y0 ], [ x1, y1 ] ]; + x0 = +_[0][0], x1 = +_[1][0]; + y0 = +_[0][1], y1 = +_[1][1]; + if (x0 > x1) _ = x0, x0 = x1, x1 = _; + if (y0 > y1) _ = y0, y0 = y1, y1 = _; + return graticule.precision(precision); + }; + graticule.step = function(_) { + if (!arguments.length) return graticule.minorStep(); + return graticule.majorStep(_).minorStep(_); + }; + graticule.majorStep = function(_) { + if (!arguments.length) return [ DX, DY ]; + DX = +_[0], DY = +_[1]; + return graticule; + }; + graticule.minorStep = function(_) { + if (!arguments.length) return [ dx, dy ]; + dx = +_[0], dy = +_[1]; + return graticule; + }; + graticule.precision = function(_) { + if (!arguments.length) return precision; + precision = +_; + x = d3_geo_graticuleX(y0, y1, 90); + y = d3_geo_graticuleY(x0, x1, precision); + X = d3_geo_graticuleX(Y0, Y1, 90); + Y = d3_geo_graticuleY(X0, X1, precision); + return graticule; + }; + return graticule.majorExtent([ [ -180, -90 + ε ], [ 180, 90 - ε ] ]).minorExtent([ [ -180, -80 - ε ], [ 180, 80 + ε ] ]); + }; + function d3_geo_graticuleX(y0, y1, dy) { + var y = d3.range(y0, y1 - ε, dy).concat(y1); + return function(x) { + return y.map(function(y) { + return [ x, y ]; + }); + }; + } + function d3_geo_graticuleY(x0, x1, dx) { + var x = d3.range(x0, x1 - ε, dx).concat(x1); + return function(y) { + return x.map(function(x) { + return [ x, y ]; + }); + }; + } + function d3_source(d) { + return d.source; + } + function d3_target(d) { + return d.target; + } + d3.geo.greatArc = function() { + var source = d3_source, source_, target = d3_target, target_; + function greatArc() { + return { + type: "LineString", + coordinates: [ source_ || source.apply(this, arguments), target_ || target.apply(this, arguments) ] + }; + } + greatArc.distance = function() { + return d3.geo.distance(source_ || source.apply(this, arguments), target_ || target.apply(this, arguments)); + }; + greatArc.source = function(_) { + if (!arguments.length) return source; + source = _, source_ = typeof _ === "function" ? null : _; + return greatArc; + }; + greatArc.target = function(_) { + if (!arguments.length) return target; + target = _, target_ = typeof _ === "function" ? null : _; + return greatArc; + }; + greatArc.precision = function() { + return arguments.length ? greatArc : 0; + }; + return greatArc; + }; + d3.geo.interpolate = function(source, target) { + return d3_geo_interpolate(source[0] * d3_radians, source[1] * d3_radians, target[0] * d3_radians, target[1] * d3_radians); + }; + function d3_geo_interpolate(x0, y0, x1, y1) { + var cy0 = Math.cos(y0), sy0 = Math.sin(y0), cy1 = Math.cos(y1), sy1 = Math.sin(y1), kx0 = cy0 * Math.cos(x0), ky0 = cy0 * Math.sin(x0), kx1 = cy1 * Math.cos(x1), ky1 = cy1 * Math.sin(x1), d = 2 * Math.asin(Math.sqrt(d3_haversin(y1 - y0) + cy0 * cy1 * d3_haversin(x1 - x0))), k = 1 / Math.sin(d); + var interpolate = d ? function(t) { + var B = Math.sin(t *= d) * k, A = Math.sin(d - t) * k, x = A * kx0 + B * kx1, y = A * ky0 + B * ky1, z = A * sy0 + B * sy1; + return [ Math.atan2(y, x) * d3_degrees, Math.atan2(z, Math.sqrt(x * x + y * y)) * d3_degrees ]; + } : function() { + return [ x0 * d3_degrees, y0 * d3_degrees ]; + }; + interpolate.distance = d; + return interpolate; + } + d3.geo.length = function(object) { + d3_geo_lengthSum = 0; + d3.geo.stream(object, d3_geo_length); + return d3_geo_lengthSum; + }; + var d3_geo_lengthSum; + var d3_geo_length = { + sphere: d3_noop, + point: d3_noop, + lineStart: d3_geo_lengthLineStart, + lineEnd: d3_noop, + polygonStart: d3_noop, + polygonEnd: d3_noop + }; + function d3_geo_lengthLineStart() { + var λ0, sinφ0, cosφ0; + d3_geo_length.point = function(λ, φ) { + λ0 = λ * d3_radians, sinφ0 = Math.sin(φ *= d3_radians), cosφ0 = Math.cos(φ); + d3_geo_length.point = nextPoint; + }; + d3_geo_length.lineEnd = function() { + d3_geo_length.point = d3_geo_length.lineEnd = d3_noop; + }; + function nextPoint(λ, φ) { + var sinφ = Math.sin(φ *= d3_radians), cosφ = Math.cos(φ), t = abs((λ *= d3_radians) - λ0), cosΔλ = Math.cos(t); + d3_geo_lengthSum += Math.atan2(Math.sqrt((t = cosφ * Math.sin(t)) * t + (t = cosφ0 * sinφ - sinφ0 * cosφ * cosΔλ) * t), sinφ0 * sinφ + cosφ0 * cosφ * cosΔλ); + λ0 = λ, sinφ0 = sinφ, cosφ0 = cosφ; + } + } + function d3_geo_azimuthal(scale, angle) { + function azimuthal(λ, φ) { + var cosλ = Math.cos(λ), cosφ = Math.cos(φ), k = scale(cosλ * cosφ); + return [ k * cosφ * Math.sin(λ), k * Math.sin(φ) ]; + } + azimuthal.invert = function(x, y) { + var ρ = Math.sqrt(x * x + y * y), c = angle(ρ), sinc = Math.sin(c), cosc = Math.cos(c); + return [ Math.atan2(x * sinc, ρ * cosc), Math.asin(ρ && y * sinc / ρ) ]; + }; + return azimuthal; + } + var d3_geo_azimuthalEqualArea = d3_geo_azimuthal(function(cosλcosφ) { + return Math.sqrt(2 / (1 + cosλcosφ)); + }, function(ρ) { + return 2 * Math.asin(ρ / 2); + }); + (d3.geo.azimuthalEqualArea = function() { + return d3_geo_projection(d3_geo_azimuthalEqualArea); + }).raw = d3_geo_azimuthalEqualArea; + var d3_geo_azimuthalEquidistant = d3_geo_azimuthal(function(cosλcosφ) { + var c = Math.acos(cosλcosφ); + return c && c / Math.sin(c); + }, d3_identity); + (d3.geo.azimuthalEquidistant = function() { + return d3_geo_projection(d3_geo_azimuthalEquidistant); + }).raw = d3_geo_azimuthalEquidistant; + function d3_geo_conicConformal(φ0, φ1) { + var cosφ0 = Math.cos(φ0), t = function(φ) { + return Math.tan(π / 4 + φ / 2); + }, n = φ0 === φ1 ? Math.sin(φ0) : Math.log(cosφ0 / Math.cos(φ1)) / Math.log(t(φ1) / t(φ0)), F = cosφ0 * Math.pow(t(φ0), n) / n; + if (!n) return d3_geo_mercator; + function forward(λ, φ) { + if (F > 0) { + if (φ < -halfπ + ε) φ = -halfπ + ε; + } else { + if (φ > halfπ - ε) φ = halfπ - ε; + } + var ρ = F / Math.pow(t(φ), n); + return [ ρ * Math.sin(n * λ), F - ρ * Math.cos(n * λ) ]; + } + forward.invert = function(x, y) { + var ρ0_y = F - y, ρ = d3_sgn(n) * Math.sqrt(x * x + ρ0_y * ρ0_y); + return [ Math.atan2(x, ρ0_y) / n, 2 * Math.atan(Math.pow(F / ρ, 1 / n)) - halfπ ]; + }; + return forward; + } + (d3.geo.conicConformal = function() { + return d3_geo_conic(d3_geo_conicConformal); + }).raw = d3_geo_conicConformal; + function d3_geo_conicEquidistant(φ0, φ1) { + var cosφ0 = Math.cos(φ0), n = φ0 === φ1 ? Math.sin(φ0) : (cosφ0 - Math.cos(φ1)) / (φ1 - φ0), G = cosφ0 / n + φ0; + if (abs(n) < ε) return d3_geo_equirectangular; + function forward(λ, φ) { + var ρ = G - φ; + return [ ρ * Math.sin(n * λ), G - ρ * Math.cos(n * λ) ]; + } + forward.invert = function(x, y) { + var ρ0_y = G - y; + return [ Math.atan2(x, ρ0_y) / n, G - d3_sgn(n) * Math.sqrt(x * x + ρ0_y * ρ0_y) ]; + }; + return forward; + } + (d3.geo.conicEquidistant = function() { + return d3_geo_conic(d3_geo_conicEquidistant); + }).raw = d3_geo_conicEquidistant; + var d3_geo_gnomonic = d3_geo_azimuthal(function(cosλcosφ) { + return 1 / cosλcosφ; + }, Math.atan); + (d3.geo.gnomonic = function() { + return d3_geo_projection(d3_geo_gnomonic); + }).raw = d3_geo_gnomonic; + function d3_geo_mercator(λ, φ) { + return [ λ, Math.log(Math.tan(π / 4 + φ / 2)) ]; + } + d3_geo_mercator.invert = function(x, y) { + return [ x, 2 * Math.atan(Math.exp(y)) - halfπ ]; + }; + function d3_geo_mercatorProjection(project) { + var m = d3_geo_projection(project), scale = m.scale, translate = m.translate, clipExtent = m.clipExtent, clipAuto; + m.scale = function() { + var v = scale.apply(m, arguments); + return v === m ? clipAuto ? m.clipExtent(null) : m : v; + }; + m.translate = function() { + var v = translate.apply(m, arguments); + return v === m ? clipAuto ? m.clipExtent(null) : m : v; + }; + m.clipExtent = function(_) { + var v = clipExtent.apply(m, arguments); + if (v === m) { + if (clipAuto = _ == null) { + var k = π * scale(), t = translate(); + clipExtent([ [ t[0] - k, t[1] - k ], [ t[0] + k, t[1] + k ] ]); + } + } else if (clipAuto) { + v = null; + } + return v; + }; + return m.clipExtent(null); + } + (d3.geo.mercator = function() { + return d3_geo_mercatorProjection(d3_geo_mercator); + }).raw = d3_geo_mercator; + var d3_geo_orthographic = d3_geo_azimuthal(function() { + return 1; + }, Math.asin); + (d3.geo.orthographic = function() { + return d3_geo_projection(d3_geo_orthographic); + }).raw = d3_geo_orthographic; + var d3_geo_stereographic = d3_geo_azimuthal(function(cosλcosφ) { + return 1 / (1 + cosλcosφ); + }, function(ρ) { + return 2 * Math.atan(ρ); + }); + (d3.geo.stereographic = function() { + return d3_geo_projection(d3_geo_stereographic); + }).raw = d3_geo_stereographic; + function d3_geo_transverseMercator(λ, φ) { + return [ Math.log(Math.tan(π / 4 + φ / 2)), -λ ]; + } + d3_geo_transverseMercator.invert = function(x, y) { + return [ -y, 2 * Math.atan(Math.exp(x)) - halfπ ]; + }; + (d3.geo.transverseMercator = function() { + var projection = d3_geo_mercatorProjection(d3_geo_transverseMercator), center = projection.center, rotate = projection.rotate; + projection.center = function(_) { + return _ ? center([ -_[1], _[0] ]) : (_ = center(), [ -_[1], _[0] ]); + }; + projection.rotate = function(_) { + return _ ? rotate([ _[0], _[1], _.length > 2 ? _[2] + 90 : 90 ]) : (_ = rotate(), + [ _[0], _[1], _[2] - 90 ]); + }; + return projection.rotate([ 0, 0 ]); + }).raw = d3_geo_transverseMercator; + d3.geom = {}; + function d3_geom_pointX(d) { + return d[0]; + } + function d3_geom_pointY(d) { + return d[1]; + } + d3.geom.hull = function(vertices) { + var x = d3_geom_pointX, y = d3_geom_pointY; + if (arguments.length) return hull(vertices); + function hull(data) { + if (data.length < 3) return []; + var fx = d3_functor(x), fy = d3_functor(y), i, n = data.length, points = [], flippedPoints = []; + for (i = 0; i < n; i++) { + points.push([ +fx.call(this, data[i], i), +fy.call(this, data[i], i), i ]); + } + points.sort(d3_geom_hullOrder); + for (i = 0; i < n; i++) flippedPoints.push([ points[i][0], -points[i][1] ]); + var upper = d3_geom_hullUpper(points), lower = d3_geom_hullUpper(flippedPoints); + var skipLeft = lower[0] === upper[0], skipRight = lower[lower.length - 1] === upper[upper.length - 1], polygon = []; + for (i = upper.length - 1; i >= 0; --i) polygon.push(data[points[upper[i]][2]]); + for (i = +skipLeft; i < lower.length - skipRight; ++i) polygon.push(data[points[lower[i]][2]]); + return polygon; + } + hull.x = function(_) { + return arguments.length ? (x = _, hull) : x; + }; + hull.y = function(_) { + return arguments.length ? (y = _, hull) : y; + }; + return hull; + }; + function d3_geom_hullUpper(points) { + var n = points.length, hull = [ 0, 1 ], hs = 2; + for (var i = 2; i < n; i++) { + while (hs > 1 && d3_cross2d(points[hull[hs - 2]], points[hull[hs - 1]], points[i]) <= 0) --hs; + hull[hs++] = i; + } + return hull.slice(0, hs); + } + function d3_geom_hullOrder(a, b) { + return a[0] - b[0] || a[1] - b[1]; + } + d3.geom.polygon = function(coordinates) { + d3_subclass(coordinates, d3_geom_polygonPrototype); + return coordinates; + }; + var d3_geom_polygonPrototype = d3.geom.polygon.prototype = []; + d3_geom_polygonPrototype.area = function() { + var i = -1, n = this.length, a, b = this[n - 1], area = 0; + while (++i < n) { + a = b; + b = this[i]; + area += a[1] * b[0] - a[0] * b[1]; + } + return area * .5; + }; + d3_geom_polygonPrototype.centroid = function(k) { + var i = -1, n = this.length, x = 0, y = 0, a, b = this[n - 1], c; + if (!arguments.length) k = -1 / (6 * this.area()); + while (++i < n) { + a = b; + b = this[i]; + c = a[0] * b[1] - b[0] * a[1]; + x += (a[0] + b[0]) * c; + y += (a[1] + b[1]) * c; + } + return [ x * k, y * k ]; + }; + d3_geom_polygonPrototype.clip = function(subject) { + var input, closed = d3_geom_polygonClosed(subject), i = -1, n = this.length - d3_geom_polygonClosed(this), j, m, a = this[n - 1], b, c, d; + while (++i < n) { + input = subject.slice(); + subject.length = 0; + b = this[i]; + c = input[(m = input.length - closed) - 1]; + j = -1; + while (++j < m) { + d = input[j]; + if (d3_geom_polygonInside(d, a, b)) { + if (!d3_geom_polygonInside(c, a, b)) { + subject.push(d3_geom_polygonIntersect(c, d, a, b)); + } + subject.push(d); + } else if (d3_geom_polygonInside(c, a, b)) { + subject.push(d3_geom_polygonIntersect(c, d, a, b)); + } + c = d; + } + if (closed) subject.push(subject[0]); + a = b; + } + return subject; + }; + function d3_geom_polygonInside(p, a, b) { + return (b[0] - a[0]) * (p[1] - a[1]) < (b[1] - a[1]) * (p[0] - a[0]); + } + function d3_geom_polygonIntersect(c, d, a, b) { + var x1 = c[0], x3 = a[0], x21 = d[0] - x1, x43 = b[0] - x3, y1 = c[1], y3 = a[1], y21 = d[1] - y1, y43 = b[1] - y3, ua = (x43 * (y1 - y3) - y43 * (x1 - x3)) / (y43 * x21 - x43 * y21); + return [ x1 + ua * x21, y1 + ua * y21 ]; + } + function d3_geom_polygonClosed(coordinates) { + var a = coordinates[0], b = coordinates[coordinates.length - 1]; + return !(a[0] - b[0] || a[1] - b[1]); + } + var d3_geom_voronoiEdges, d3_geom_voronoiCells, d3_geom_voronoiBeaches, d3_geom_voronoiBeachPool = [], d3_geom_voronoiFirstCircle, d3_geom_voronoiCircles, d3_geom_voronoiCirclePool = []; + function d3_geom_voronoiBeach() { + d3_geom_voronoiRedBlackNode(this); + this.edge = this.site = this.circle = null; + } + function d3_geom_voronoiCreateBeach(site) { + var beach = d3_geom_voronoiBeachPool.pop() || new d3_geom_voronoiBeach(); + beach.site = site; + return beach; + } + function d3_geom_voronoiDetachBeach(beach) { + d3_geom_voronoiDetachCircle(beach); + d3_geom_voronoiBeaches.remove(beach); + d3_geom_voronoiBeachPool.push(beach); + d3_geom_voronoiRedBlackNode(beach); + } + function d3_geom_voronoiRemoveBeach(beach) { + var circle = beach.circle, x = circle.x, y = circle.cy, vertex = { + x: x, + y: y + }, previous = beach.P, next = beach.N, disappearing = [ beach ]; + d3_geom_voronoiDetachBeach(beach); + var lArc = previous; + while (lArc.circle && abs(x - lArc.circle.x) < ε && abs(y - lArc.circle.cy) < ε) { + previous = lArc.P; + disappearing.unshift(lArc); + d3_geom_voronoiDetachBeach(lArc); + lArc = previous; + } + disappearing.unshift(lArc); + d3_geom_voronoiDetachCircle(lArc); + var rArc = next; + while (rArc.circle && abs(x - rArc.circle.x) < ε && abs(y - rArc.circle.cy) < ε) { + next = rArc.N; + disappearing.push(rArc); + d3_geom_voronoiDetachBeach(rArc); + rArc = next; + } + disappearing.push(rArc); + d3_geom_voronoiDetachCircle(rArc); + var nArcs = disappearing.length, iArc; + for (iArc = 1; iArc < nArcs; ++iArc) { + rArc = disappearing[iArc]; + lArc = disappearing[iArc - 1]; + d3_geom_voronoiSetEdgeEnd(rArc.edge, lArc.site, rArc.site, vertex); + } + lArc = disappearing[0]; + rArc = disappearing[nArcs - 1]; + rArc.edge = d3_geom_voronoiCreateEdge(lArc.site, rArc.site, null, vertex); + d3_geom_voronoiAttachCircle(lArc); + d3_geom_voronoiAttachCircle(rArc); + } + function d3_geom_voronoiAddBeach(site) { + var x = site.x, directrix = site.y, lArc, rArc, dxl, dxr, node = d3_geom_voronoiBeaches._; + while (node) { + dxl = d3_geom_voronoiLeftBreakPoint(node, directrix) - x; + if (dxl > ε) node = node.L; else { + dxr = x - d3_geom_voronoiRightBreakPoint(node, directrix); + if (dxr > ε) { + if (!node.R) { + lArc = node; + break; + } + node = node.R; + } else { + if (dxl > -ε) { + lArc = node.P; + rArc = node; + } else if (dxr > -ε) { + lArc = node; + rArc = node.N; + } else { + lArc = rArc = node; + } + break; + } + } + } + var newArc = d3_geom_voronoiCreateBeach(site); + d3_geom_voronoiBeaches.insert(lArc, newArc); + if (!lArc && !rArc) return; + if (lArc === rArc) { + d3_geom_voronoiDetachCircle(lArc); + rArc = d3_geom_voronoiCreateBeach(lArc.site); + d3_geom_voronoiBeaches.insert(newArc, rArc); + newArc.edge = rArc.edge = d3_geom_voronoiCreateEdge(lArc.site, newArc.site); + d3_geom_voronoiAttachCircle(lArc); + d3_geom_voronoiAttachCircle(rArc); + return; + } + if (!rArc) { + newArc.edge = d3_geom_voronoiCreateEdge(lArc.site, newArc.site); + return; + } + d3_geom_voronoiDetachCircle(lArc); + d3_geom_voronoiDetachCircle(rArc); + var lSite = lArc.site, ax = lSite.x, ay = lSite.y, bx = site.x - ax, by = site.y - ay, rSite = rArc.site, cx = rSite.x - ax, cy = rSite.y - ay, d = 2 * (bx * cy - by * cx), hb = bx * bx + by * by, hc = cx * cx + cy * cy, vertex = { + x: (cy * hb - by * hc) / d + ax, + y: (bx * hc - cx * hb) / d + ay + }; + d3_geom_voronoiSetEdgeEnd(rArc.edge, lSite, rSite, vertex); + newArc.edge = d3_geom_voronoiCreateEdge(lSite, site, null, vertex); + rArc.edge = d3_geom_voronoiCreateEdge(site, rSite, null, vertex); + d3_geom_voronoiAttachCircle(lArc); + d3_geom_voronoiAttachCircle(rArc); + } + function d3_geom_voronoiLeftBreakPoint(arc, directrix) { + var site = arc.site, rfocx = site.x, rfocy = site.y, pby2 = rfocy - directrix; + if (!pby2) return rfocx; + var lArc = arc.P; + if (!lArc) return -Infinity; + site = lArc.site; + var lfocx = site.x, lfocy = site.y, plby2 = lfocy - directrix; + if (!plby2) return lfocx; + var hl = lfocx - rfocx, aby2 = 1 / pby2 - 1 / plby2, b = hl / plby2; + if (aby2) return (-b + Math.sqrt(b * b - 2 * aby2 * (hl * hl / (-2 * plby2) - lfocy + plby2 / 2 + rfocy - pby2 / 2))) / aby2 + rfocx; + return (rfocx + lfocx) / 2; + } + function d3_geom_voronoiRightBreakPoint(arc, directrix) { + var rArc = arc.N; + if (rArc) return d3_geom_voronoiLeftBreakPoint(rArc, directrix); + var site = arc.site; + return site.y === directrix ? site.x : Infinity; + } + function d3_geom_voronoiCell(site) { + this.site = site; + this.edges = []; + } + d3_geom_voronoiCell.prototype.prepare = function() { + var halfEdges = this.edges, iHalfEdge = halfEdges.length, edge; + while (iHalfEdge--) { + edge = halfEdges[iHalfEdge].edge; + if (!edge.b || !edge.a) halfEdges.splice(iHalfEdge, 1); + } + halfEdges.sort(d3_geom_voronoiHalfEdgeOrder); + return halfEdges.length; + }; + function d3_geom_voronoiCloseCells(extent) { + var x0 = extent[0][0], x1 = extent[1][0], y0 = extent[0][1], y1 = extent[1][1], x2, y2, x3, y3, cells = d3_geom_voronoiCells, iCell = cells.length, cell, iHalfEdge, halfEdges, nHalfEdges, start, end; + while (iCell--) { + cell = cells[iCell]; + if (!cell || !cell.prepare()) continue; + halfEdges = cell.edges; + nHalfEdges = halfEdges.length; + iHalfEdge = 0; + while (iHalfEdge < nHalfEdges) { + end = halfEdges[iHalfEdge].end(), x3 = end.x, y3 = end.y; + start = halfEdges[++iHalfEdge % nHalfEdges].start(), x2 = start.x, y2 = start.y; + if (abs(x3 - x2) > ε || abs(y3 - y2) > ε) { + halfEdges.splice(iHalfEdge, 0, new d3_geom_voronoiHalfEdge(d3_geom_voronoiCreateBorderEdge(cell.site, end, abs(x3 - x0) < ε && y1 - y3 > ε ? { + x: x0, + y: abs(x2 - x0) < ε ? y2 : y1 + } : abs(y3 - y1) < ε && x1 - x3 > ε ? { + x: abs(y2 - y1) < ε ? x2 : x1, + y: y1 + } : abs(x3 - x1) < ε && y3 - y0 > ε ? { + x: x1, + y: abs(x2 - x1) < ε ? y2 : y0 + } : abs(y3 - y0) < ε && x3 - x0 > ε ? { + x: abs(y2 - y0) < ε ? x2 : x0, + y: y0 + } : null), cell.site, null)); + ++nHalfEdges; + } + } + } + } + function d3_geom_voronoiHalfEdgeOrder(a, b) { + return b.angle - a.angle; + } + function d3_geom_voronoiCircle() { + d3_geom_voronoiRedBlackNode(this); + this.x = this.y = this.arc = this.site = this.cy = null; + } + function d3_geom_voronoiAttachCircle(arc) { + var lArc = arc.P, rArc = arc.N; + if (!lArc || !rArc) return; + var lSite = lArc.site, cSite = arc.site, rSite = rArc.site; + if (lSite === rSite) return; + var bx = cSite.x, by = cSite.y, ax = lSite.x - bx, ay = lSite.y - by, cx = rSite.x - bx, cy = rSite.y - by; + var d = 2 * (ax * cy - ay * cx); + if (d >= -ε2) return; + var ha = ax * ax + ay * ay, hc = cx * cx + cy * cy, x = (cy * ha - ay * hc) / d, y = (ax * hc - cx * ha) / d, cy = y + by; + var circle = d3_geom_voronoiCirclePool.pop() || new d3_geom_voronoiCircle(); + circle.arc = arc; + circle.site = cSite; + circle.x = x + bx; + circle.y = cy + Math.sqrt(x * x + y * y); + circle.cy = cy; + arc.circle = circle; + var before = null, node = d3_geom_voronoiCircles._; + while (node) { + if (circle.y < node.y || circle.y === node.y && circle.x <= node.x) { + if (node.L) node = node.L; else { + before = node.P; + break; + } + } else { + if (node.R) node = node.R; else { + before = node; + break; + } + } + } + d3_geom_voronoiCircles.insert(before, circle); + if (!before) d3_geom_voronoiFirstCircle = circle; + } + function d3_geom_voronoiDetachCircle(arc) { + var circle = arc.circle; + if (circle) { + if (!circle.P) d3_geom_voronoiFirstCircle = circle.N; + d3_geom_voronoiCircles.remove(circle); + d3_geom_voronoiCirclePool.push(circle); + d3_geom_voronoiRedBlackNode(circle); + arc.circle = null; + } + } + function d3_geom_voronoiClipEdges(extent) { + var edges = d3_geom_voronoiEdges, clip = d3_geom_clipLine(extent[0][0], extent[0][1], extent[1][0], extent[1][1]), i = edges.length, e; + while (i--) { + e = edges[i]; + if (!d3_geom_voronoiConnectEdge(e, extent) || !clip(e) || abs(e.a.x - e.b.x) < ε && abs(e.a.y - e.b.y) < ε) { + e.a = e.b = null; + edges.splice(i, 1); + } + } + } + function d3_geom_voronoiConnectEdge(edge, extent) { + var vb = edge.b; + if (vb) return true; + var va = edge.a, x0 = extent[0][0], x1 = extent[1][0], y0 = extent[0][1], y1 = extent[1][1], lSite = edge.l, rSite = edge.r, lx = lSite.x, ly = lSite.y, rx = rSite.x, ry = rSite.y, fx = (lx + rx) / 2, fy = (ly + ry) / 2, fm, fb; + if (ry === ly) { + if (fx < x0 || fx >= x1) return; + if (lx > rx) { + if (!va) va = { + x: fx, + y: y0 + }; else if (va.y >= y1) return; + vb = { + x: fx, + y: y1 + }; + } else { + if (!va) va = { + x: fx, + y: y1 + }; else if (va.y < y0) return; + vb = { + x: fx, + y: y0 + }; + } + } else { + fm = (lx - rx) / (ry - ly); + fb = fy - fm * fx; + if (fm < -1 || fm > 1) { + if (lx > rx) { + if (!va) va = { + x: (y0 - fb) / fm, + y: y0 + }; else if (va.y >= y1) return; + vb = { + x: (y1 - fb) / fm, + y: y1 + }; + } else { + if (!va) va = { + x: (y1 - fb) / fm, + y: y1 + }; else if (va.y < y0) return; + vb = { + x: (y0 - fb) / fm, + y: y0 + }; + } + } else { + if (ly < ry) { + if (!va) va = { + x: x0, + y: fm * x0 + fb + }; else if (va.x >= x1) return; + vb = { + x: x1, + y: fm * x1 + fb + }; + } else { + if (!va) va = { + x: x1, + y: fm * x1 + fb + }; else if (va.x < x0) return; + vb = { + x: x0, + y: fm * x0 + fb + }; + } + } + } + edge.a = va; + edge.b = vb; + return true; + } + function d3_geom_voronoiEdge(lSite, rSite) { + this.l = lSite; + this.r = rSite; + this.a = this.b = null; + } + function d3_geom_voronoiCreateEdge(lSite, rSite, va, vb) { + var edge = new d3_geom_voronoiEdge(lSite, rSite); + d3_geom_voronoiEdges.push(edge); + if (va) d3_geom_voronoiSetEdgeEnd(edge, lSite, rSite, va); + if (vb) d3_geom_voronoiSetEdgeEnd(edge, rSite, lSite, vb); + d3_geom_voronoiCells[lSite.i].edges.push(new d3_geom_voronoiHalfEdge(edge, lSite, rSite)); + d3_geom_voronoiCells[rSite.i].edges.push(new d3_geom_voronoiHalfEdge(edge, rSite, lSite)); + return edge; + } + function d3_geom_voronoiCreateBorderEdge(lSite, va, vb) { + var edge = new d3_geom_voronoiEdge(lSite, null); + edge.a = va; + edge.b = vb; + d3_geom_voronoiEdges.push(edge); + return edge; + } + function d3_geom_voronoiSetEdgeEnd(edge, lSite, rSite, vertex) { + if (!edge.a && !edge.b) { + edge.a = vertex; + edge.l = lSite; + edge.r = rSite; + } else if (edge.l === rSite) { + edge.b = vertex; + } else { + edge.a = vertex; + } + } + function d3_geom_voronoiHalfEdge(edge, lSite, rSite) { + var va = edge.a, vb = edge.b; + this.edge = edge; + this.site = lSite; + this.angle = rSite ? Math.atan2(rSite.y - lSite.y, rSite.x - lSite.x) : edge.l === lSite ? Math.atan2(vb.x - va.x, va.y - vb.y) : Math.atan2(va.x - vb.x, vb.y - va.y); + } + d3_geom_voronoiHalfEdge.prototype = { + start: function() { + return this.edge.l === this.site ? this.edge.a : this.edge.b; + }, + end: function() { + return this.edge.l === this.site ? this.edge.b : this.edge.a; + } + }; + function d3_geom_voronoiRedBlackTree() { + this._ = null; + } + function d3_geom_voronoiRedBlackNode(node) { + node.U = node.C = node.L = node.R = node.P = node.N = null; + } + d3_geom_voronoiRedBlackTree.prototype = { + insert: function(after, node) { + var parent, grandpa, uncle; + if (after) { + node.P = after; + node.N = after.N; + if (after.N) after.N.P = node; + after.N = node; + if (after.R) { + after = after.R; + while (after.L) after = after.L; + after.L = node; + } else { + after.R = node; + } + parent = after; + } else if (this._) { + after = d3_geom_voronoiRedBlackFirst(this._); + node.P = null; + node.N = after; + after.P = after.L = node; + parent = after; + } else { + node.P = node.N = null; + this._ = node; + parent = null; + } + node.L = node.R = null; + node.U = parent; + node.C = true; + after = node; + while (parent && parent.C) { + grandpa = parent.U; + if (parent === grandpa.L) { + uncle = grandpa.R; + if (uncle && uncle.C) { + parent.C = uncle.C = false; + grandpa.C = true; + after = grandpa; + } else { + if (after === parent.R) { + d3_geom_voronoiRedBlackRotateLeft(this, parent); + after = parent; + parent = after.U; + } + parent.C = false; + grandpa.C = true; + d3_geom_voronoiRedBlackRotateRight(this, grandpa); + } + } else { + uncle = grandpa.L; + if (uncle && uncle.C) { + parent.C = uncle.C = false; + grandpa.C = true; + after = grandpa; + } else { + if (after === parent.L) { + d3_geom_voronoiRedBlackRotateRight(this, parent); + after = parent; + parent = after.U; + } + parent.C = false; + grandpa.C = true; + d3_geom_voronoiRedBlackRotateLeft(this, grandpa); + } + } + parent = after.U; + } + this._.C = false; + }, + remove: function(node) { + if (node.N) node.N.P = node.P; + if (node.P) node.P.N = node.N; + node.N = node.P = null; + var parent = node.U, sibling, left = node.L, right = node.R, next, red; + if (!left) next = right; else if (!right) next = left; else next = d3_geom_voronoiRedBlackFirst(right); + if (parent) { + if (parent.L === node) parent.L = next; else parent.R = next; + } else { + this._ = next; + } + if (left && right) { + red = next.C; + next.C = node.C; + next.L = left; + left.U = next; + if (next !== right) { + parent = next.U; + next.U = node.U; + node = next.R; + parent.L = node; + next.R = right; + right.U = next; + } else { + next.U = parent; + parent = next; + node = next.R; + } + } else { + red = node.C; + node = next; + } + if (node) node.U = parent; + if (red) return; + if (node && node.C) { + node.C = false; + return; + } + do { + if (node === this._) break; + if (node === parent.L) { + sibling = parent.R; + if (sibling.C) { + sibling.C = false; + parent.C = true; + d3_geom_voronoiRedBlackRotateLeft(this, parent); + sibling = parent.R; + } + if (sibling.L && sibling.L.C || sibling.R && sibling.R.C) { + if (!sibling.R || !sibling.R.C) { + sibling.L.C = false; + sibling.C = true; + d3_geom_voronoiRedBlackRotateRight(this, sibling); + sibling = parent.R; + } + sibling.C = parent.C; + parent.C = sibling.R.C = false; + d3_geom_voronoiRedBlackRotateLeft(this, parent); + node = this._; + break; + } + } else { + sibling = parent.L; + if (sibling.C) { + sibling.C = false; + parent.C = true; + d3_geom_voronoiRedBlackRotateRight(this, parent); + sibling = parent.L; + } + if (sibling.L && sibling.L.C || sibling.R && sibling.R.C) { + if (!sibling.L || !sibling.L.C) { + sibling.R.C = false; + sibling.C = true; + d3_geom_voronoiRedBlackRotateLeft(this, sibling); + sibling = parent.L; + } + sibling.C = parent.C; + parent.C = sibling.L.C = false; + d3_geom_voronoiRedBlackRotateRight(this, parent); + node = this._; + break; + } + } + sibling.C = true; + node = parent; + parent = parent.U; + } while (!node.C); + if (node) node.C = false; + } + }; + function d3_geom_voronoiRedBlackRotateLeft(tree, node) { + var p = node, q = node.R, parent = p.U; + if (parent) { + if (parent.L === p) parent.L = q; else parent.R = q; + } else { + tree._ = q; + } + q.U = parent; + p.U = q; + p.R = q.L; + if (p.R) p.R.U = p; + q.L = p; + } + function d3_geom_voronoiRedBlackRotateRight(tree, node) { + var p = node, q = node.L, parent = p.U; + if (parent) { + if (parent.L === p) parent.L = q; else parent.R = q; + } else { + tree._ = q; + } + q.U = parent; + p.U = q; + p.L = q.R; + if (p.L) p.L.U = p; + q.R = p; + } + function d3_geom_voronoiRedBlackFirst(node) { + while (node.L) node = node.L; + return node; + } + function d3_geom_voronoi(sites, bbox) { + var site = sites.sort(d3_geom_voronoiVertexOrder).pop(), x0, y0, circle; + d3_geom_voronoiEdges = []; + d3_geom_voronoiCells = new Array(sites.length); + d3_geom_voronoiBeaches = new d3_geom_voronoiRedBlackTree(); + d3_geom_voronoiCircles = new d3_geom_voronoiRedBlackTree(); + while (true) { + circle = d3_geom_voronoiFirstCircle; + if (site && (!circle || site.y < circle.y || site.y === circle.y && site.x < circle.x)) { + if (site.x !== x0 || site.y !== y0) { + d3_geom_voronoiCells[site.i] = new d3_geom_voronoiCell(site); + d3_geom_voronoiAddBeach(site); + x0 = site.x, y0 = site.y; + } + site = sites.pop(); + } else if (circle) { + d3_geom_voronoiRemoveBeach(circle.arc); + } else { + break; + } + } + if (bbox) d3_geom_voronoiClipEdges(bbox), d3_geom_voronoiCloseCells(bbox); + var diagram = { + cells: d3_geom_voronoiCells, + edges: d3_geom_voronoiEdges + }; + d3_geom_voronoiBeaches = d3_geom_voronoiCircles = d3_geom_voronoiEdges = d3_geom_voronoiCells = null; + return diagram; + } + function d3_geom_voronoiVertexOrder(a, b) { + return b.y - a.y || b.x - a.x; + } + d3.geom.voronoi = function(points) { + var x = d3_geom_pointX, y = d3_geom_pointY, fx = x, fy = y, clipExtent = d3_geom_voronoiClipExtent; + if (points) return voronoi(points); + function voronoi(data) { + var polygons = new Array(data.length), x0 = clipExtent[0][0], y0 = clipExtent[0][1], x1 = clipExtent[1][0], y1 = clipExtent[1][1]; + d3_geom_voronoi(sites(data), clipExtent).cells.forEach(function(cell, i) { + var edges = cell.edges, site = cell.site, polygon = polygons[i] = edges.length ? edges.map(function(e) { + var s = e.start(); + return [ s.x, s.y ]; + }) : site.x >= x0 && site.x <= x1 && site.y >= y0 && site.y <= y1 ? [ [ x0, y1 ], [ x1, y1 ], [ x1, y0 ], [ x0, y0 ] ] : []; + polygon.point = data[i]; + }); + return polygons; + } + function sites(data) { + return data.map(function(d, i) { + return { + x: Math.round(fx(d, i) / ε) * ε, + y: Math.round(fy(d, i) / ε) * ε, + i: i + }; + }); + } + voronoi.links = function(data) { + return d3_geom_voronoi(sites(data)).edges.filter(function(edge) { + return edge.l && edge.r; + }).map(function(edge) { + return { + source: data[edge.l.i], + target: data[edge.r.i] + }; + }); + }; + voronoi.triangles = function(data) { + var triangles = []; + d3_geom_voronoi(sites(data)).cells.forEach(function(cell, i) { + var site = cell.site, edges = cell.edges.sort(d3_geom_voronoiHalfEdgeOrder), j = -1, m = edges.length, e0, s0, e1 = edges[m - 1].edge, s1 = e1.l === site ? e1.r : e1.l; + while (++j < m) { + e0 = e1; + s0 = s1; + e1 = edges[j].edge; + s1 = e1.l === site ? e1.r : e1.l; + if (i < s0.i && i < s1.i && d3_geom_voronoiTriangleArea(site, s0, s1) < 0) { + triangles.push([ data[i], data[s0.i], data[s1.i] ]); + } + } + }); + return triangles; + }; + voronoi.x = function(_) { + return arguments.length ? (fx = d3_functor(x = _), voronoi) : x; + }; + voronoi.y = function(_) { + return arguments.length ? (fy = d3_functor(y = _), voronoi) : y; + }; + voronoi.clipExtent = function(_) { + if (!arguments.length) return clipExtent === d3_geom_voronoiClipExtent ? null : clipExtent; + clipExtent = _ == null ? d3_geom_voronoiClipExtent : _; + return voronoi; + }; + voronoi.size = function(_) { + if (!arguments.length) return clipExtent === d3_geom_voronoiClipExtent ? null : clipExtent && clipExtent[1]; + return voronoi.clipExtent(_ && [ [ 0, 0 ], _ ]); + }; + return voronoi; + }; + var d3_geom_voronoiClipExtent = [ [ -1e6, -1e6 ], [ 1e6, 1e6 ] ]; + function d3_geom_voronoiTriangleArea(a, b, c) { + return (a.x - c.x) * (b.y - a.y) - (a.x - b.x) * (c.y - a.y); + } + d3.geom.delaunay = function(vertices) { + return d3.geom.voronoi().triangles(vertices); + }; + d3.geom.quadtree = function(points, x1, y1, x2, y2) { + var x = d3_geom_pointX, y = d3_geom_pointY, compat; + if (compat = arguments.length) { + x = d3_geom_quadtreeCompatX; + y = d3_geom_quadtreeCompatY; + if (compat === 3) { + y2 = y1; + x2 = x1; + y1 = x1 = 0; + } + return quadtree(points); + } + function quadtree(data) { + var d, fx = d3_functor(x), fy = d3_functor(y), xs, ys, i, n, x1_, y1_, x2_, y2_; + if (x1 != null) { + x1_ = x1, y1_ = y1, x2_ = x2, y2_ = y2; + } else { + x2_ = y2_ = -(x1_ = y1_ = Infinity); + xs = [], ys = []; + n = data.length; + if (compat) for (i = 0; i < n; ++i) { + d = data[i]; + if (d.x < x1_) x1_ = d.x; + if (d.y < y1_) y1_ = d.y; + if (d.x > x2_) x2_ = d.x; + if (d.y > y2_) y2_ = d.y; + xs.push(d.x); + ys.push(d.y); + } else for (i = 0; i < n; ++i) { + var x_ = +fx(d = data[i], i), y_ = +fy(d, i); + if (x_ < x1_) x1_ = x_; + if (y_ < y1_) y1_ = y_; + if (x_ > x2_) x2_ = x_; + if (y_ > y2_) y2_ = y_; + xs.push(x_); + ys.push(y_); + } + } + var dx = x2_ - x1_, dy = y2_ - y1_; + if (dx > dy) y2_ = y1_ + dx; else x2_ = x1_ + dy; + function insert(n, d, x, y, x1, y1, x2, y2) { + if (isNaN(x) || isNaN(y)) return; + if (n.leaf) { + var nx = n.x, ny = n.y; + if (nx != null) { + if (abs(nx - x) + abs(ny - y) < .01) { + insertChild(n, d, x, y, x1, y1, x2, y2); + } else { + var nPoint = n.point; + n.x = n.y = n.point = null; + insertChild(n, nPoint, nx, ny, x1, y1, x2, y2); + insertChild(n, d, x, y, x1, y1, x2, y2); + } + } else { + n.x = x, n.y = y, n.point = d; + } + } else { + insertChild(n, d, x, y, x1, y1, x2, y2); + } + } + function insertChild(n, d, x, y, x1, y1, x2, y2) { + var sx = (x1 + x2) * .5, sy = (y1 + y2) * .5, right = x >= sx, bottom = y >= sy, i = (bottom << 1) + right; + n.leaf = false; + n = n.nodes[i] || (n.nodes[i] = d3_geom_quadtreeNode()); + if (right) x1 = sx; else x2 = sx; + if (bottom) y1 = sy; else y2 = sy; + insert(n, d, x, y, x1, y1, x2, y2); + } + var root = d3_geom_quadtreeNode(); + root.add = function(d) { + insert(root, d, +fx(d, ++i), +fy(d, i), x1_, y1_, x2_, y2_); + }; + root.visit = function(f) { + d3_geom_quadtreeVisit(f, root, x1_, y1_, x2_, y2_); + }; + i = -1; + if (x1 == null) { + while (++i < n) { + insert(root, data[i], xs[i], ys[i], x1_, y1_, x2_, y2_); + } + --i; + } else data.forEach(root.add); + xs = ys = data = d = null; + return root; + } + quadtree.x = function(_) { + return arguments.length ? (x = _, quadtree) : x; + }; + quadtree.y = function(_) { + return arguments.length ? (y = _, quadtree) : y; + }; + quadtree.extent = function(_) { + if (!arguments.length) return x1 == null ? null : [ [ x1, y1 ], [ x2, y2 ] ]; + if (_ == null) x1 = y1 = x2 = y2 = null; else x1 = +_[0][0], y1 = +_[0][1], x2 = +_[1][0], + y2 = +_[1][1]; + return quadtree; + }; + quadtree.size = function(_) { + if (!arguments.length) return x1 == null ? null : [ x2 - x1, y2 - y1 ]; + if (_ == null) x1 = y1 = x2 = y2 = null; else x1 = y1 = 0, x2 = +_[0], y2 = +_[1]; + return quadtree; + }; + return quadtree; + }; + function d3_geom_quadtreeCompatX(d) { + return d.x; + } + function d3_geom_quadtreeCompatY(d) { + return d.y; + } + function d3_geom_quadtreeNode() { + return { + leaf: true, + nodes: [], + point: null, + x: null, + y: null + }; + } + function d3_geom_quadtreeVisit(f, node, x1, y1, x2, y2) { + if (!f(node, x1, y1, x2, y2)) { + var sx = (x1 + x2) * .5, sy = (y1 + y2) * .5, children = node.nodes; + if (children[0]) d3_geom_quadtreeVisit(f, children[0], x1, y1, sx, sy); + if (children[1]) d3_geom_quadtreeVisit(f, children[1], sx, y1, x2, sy); + if (children[2]) d3_geom_quadtreeVisit(f, children[2], x1, sy, sx, y2); + if (children[3]) d3_geom_quadtreeVisit(f, children[3], sx, sy, x2, y2); + } + } + d3.interpolateRgb = d3_interpolateRgb; + function d3_interpolateRgb(a, b) { + a = d3.rgb(a); + b = d3.rgb(b); + var ar = a.r, ag = a.g, ab = a.b, br = b.r - ar, bg = b.g - ag, bb = b.b - ab; + return function(t) { + return "#" + d3_rgb_hex(Math.round(ar + br * t)) + d3_rgb_hex(Math.round(ag + bg * t)) + d3_rgb_hex(Math.round(ab + bb * t)); + }; + } + d3.interpolateObject = d3_interpolateObject; + function d3_interpolateObject(a, b) { + var i = {}, c = {}, k; + for (k in a) { + if (k in b) { + i[k] = d3_interpolate(a[k], b[k]); + } else { + c[k] = a[k]; + } + } + for (k in b) { + if (!(k in a)) { + c[k] = b[k]; + } + } + return function(t) { + for (k in i) c[k] = i[k](t); + return c; + }; + } + d3.interpolateNumber = d3_interpolateNumber; + function d3_interpolateNumber(a, b) { + b -= a = +a; + return function(t) { + return a + b * t; + }; + } + d3.interpolateString = d3_interpolateString; + function d3_interpolateString(a, b) { + var bi = d3_interpolate_numberA.lastIndex = d3_interpolate_numberB.lastIndex = 0, am, bm, bs, i = -1, s = [], q = []; + a = a + "", b = b + ""; + while ((am = d3_interpolate_numberA.exec(a)) && (bm = d3_interpolate_numberB.exec(b))) { + if ((bs = bm.index) > bi) { + bs = b.substring(bi, bs); + if (s[i]) s[i] += bs; else s[++i] = bs; + } + if ((am = am[0]) === (bm = bm[0])) { + if (s[i]) s[i] += bm; else s[++i] = bm; + } else { + s[++i] = null; + q.push({ + i: i, + x: d3_interpolateNumber(am, bm) + }); + } + bi = d3_interpolate_numberB.lastIndex; + } + if (bi < b.length) { + bs = b.substring(bi); + if (s[i]) s[i] += bs; else s[++i] = bs; + } + return s.length < 2 ? q[0] ? (b = q[0].x, function(t) { + return b(t) + ""; + }) : function() { + return b; + } : (b = q.length, function(t) { + for (var i = 0, o; i < b; ++i) s[(o = q[i]).i] = o.x(t); + return s.join(""); + }); + } + var d3_interpolate_numberA = /[-+]?(?:\d+\.?\d*|\.?\d+)(?:[eE][-+]?\d+)?/g, d3_interpolate_numberB = new RegExp(d3_interpolate_numberA.source, "g"); + d3.interpolate = d3_interpolate; + function d3_interpolate(a, b) { + var i = d3.interpolators.length, f; + while (--i >= 0 && !(f = d3.interpolators[i](a, b))) ; + return f; + } + d3.interpolators = [ function(a, b) { + var t = typeof b; + return (t === "string" ? d3_rgb_names.has(b) || /^(#|rgb\(|hsl\()/.test(b) ? d3_interpolateRgb : d3_interpolateString : b instanceof d3_Color ? d3_interpolateRgb : Array.isArray(b) ? d3_interpolateArray : t === "object" && isNaN(b) ? d3_interpolateObject : d3_interpolateNumber)(a, b); + } ]; + d3.interpolateArray = d3_interpolateArray; + function d3_interpolateArray(a, b) { + var x = [], c = [], na = a.length, nb = b.length, n0 = Math.min(a.length, b.length), i; + for (i = 0; i < n0; ++i) x.push(d3_interpolate(a[i], b[i])); + for (;i < na; ++i) c[i] = a[i]; + for (;i < nb; ++i) c[i] = b[i]; + return function(t) { + for (i = 0; i < n0; ++i) c[i] = x[i](t); + return c; + }; + } + var d3_ease_default = function() { + return d3_identity; + }; + var d3_ease = d3.map({ + linear: d3_ease_default, + poly: d3_ease_poly, + quad: function() { + return d3_ease_quad; + }, + cubic: function() { + return d3_ease_cubic; + }, + sin: function() { + return d3_ease_sin; + }, + exp: function() { + return d3_ease_exp; + }, + circle: function() { + return d3_ease_circle; + }, + elastic: d3_ease_elastic, + back: d3_ease_back, + bounce: function() { + return d3_ease_bounce; + } + }); + var d3_ease_mode = d3.map({ + "in": d3_identity, + out: d3_ease_reverse, + "in-out": d3_ease_reflect, + "out-in": function(f) { + return d3_ease_reflect(d3_ease_reverse(f)); + } + }); + d3.ease = function(name) { + var i = name.indexOf("-"), t = i >= 0 ? name.substring(0, i) : name, m = i >= 0 ? name.substring(i + 1) : "in"; + t = d3_ease.get(t) || d3_ease_default; + m = d3_ease_mode.get(m) || d3_identity; + return d3_ease_clamp(m(t.apply(null, d3_arraySlice.call(arguments, 1)))); + }; + function d3_ease_clamp(f) { + return function(t) { + return t <= 0 ? 0 : t >= 1 ? 1 : f(t); + }; + } + function d3_ease_reverse(f) { + return function(t) { + return 1 - f(1 - t); + }; + } + function d3_ease_reflect(f) { + return function(t) { + return .5 * (t < .5 ? f(2 * t) : 2 - f(2 - 2 * t)); + }; + } + function d3_ease_quad(t) { + return t * t; + } + function d3_ease_cubic(t) { + return t * t * t; + } + function d3_ease_cubicInOut(t) { + if (t <= 0) return 0; + if (t >= 1) return 1; + var t2 = t * t, t3 = t2 * t; + return 4 * (t < .5 ? t3 : 3 * (t - t2) + t3 - .75); + } + function d3_ease_poly(e) { + return function(t) { + return Math.pow(t, e); + }; + } + function d3_ease_sin(t) { + return 1 - Math.cos(t * halfπ); + } + function d3_ease_exp(t) { + return Math.pow(2, 10 * (t - 1)); + } + function d3_ease_circle(t) { + return 1 - Math.sqrt(1 - t * t); + } + function d3_ease_elastic(a, p) { + var s; + if (arguments.length < 2) p = .45; + if (arguments.length) s = p / τ * Math.asin(1 / a); else a = 1, s = p / 4; + return function(t) { + return 1 + a * Math.pow(2, -10 * t) * Math.sin((t - s) * τ / p); + }; + } + function d3_ease_back(s) { + if (!s) s = 1.70158; + return function(t) { + return t * t * ((s + 1) * t - s); + }; + } + function d3_ease_bounce(t) { + return t < 1 / 2.75 ? 7.5625 * t * t : t < 2 / 2.75 ? 7.5625 * (t -= 1.5 / 2.75) * t + .75 : t < 2.5 / 2.75 ? 7.5625 * (t -= 2.25 / 2.75) * t + .9375 : 7.5625 * (t -= 2.625 / 2.75) * t + .984375; + } + d3.interpolateHcl = d3_interpolateHcl; + function d3_interpolateHcl(a, b) { + a = d3.hcl(a); + b = d3.hcl(b); + var ah = a.h, ac = a.c, al = a.l, bh = b.h - ah, bc = b.c - ac, bl = b.l - al; + if (isNaN(bc)) bc = 0, ac = isNaN(ac) ? b.c : ac; + if (isNaN(bh)) bh = 0, ah = isNaN(ah) ? b.h : ah; else if (bh > 180) bh -= 360; else if (bh < -180) bh += 360; + return function(t) { + return d3_hcl_lab(ah + bh * t, ac + bc * t, al + bl * t) + ""; + }; + } + d3.interpolateHsl = d3_interpolateHsl; + function d3_interpolateHsl(a, b) { + a = d3.hsl(a); + b = d3.hsl(b); + var ah = a.h, as = a.s, al = a.l, bh = b.h - ah, bs = b.s - as, bl = b.l - al; + if (isNaN(bs)) bs = 0, as = isNaN(as) ? b.s : as; + if (isNaN(bh)) bh = 0, ah = isNaN(ah) ? b.h : ah; else if (bh > 180) bh -= 360; else if (bh < -180) bh += 360; + return function(t) { + return d3_hsl_rgb(ah + bh * t, as + bs * t, al + bl * t) + ""; + }; + } + d3.interpolateLab = d3_interpolateLab; + function d3_interpolateLab(a, b) { + a = d3.lab(a); + b = d3.lab(b); + var al = a.l, aa = a.a, ab = a.b, bl = b.l - al, ba = b.a - aa, bb = b.b - ab; + return function(t) { + return d3_lab_rgb(al + bl * t, aa + ba * t, ab + bb * t) + ""; + }; + } + d3.interpolateRound = d3_interpolateRound; + function d3_interpolateRound(a, b) { + b -= a; + return function(t) { + return Math.round(a + b * t); + }; + } + d3.transform = function(string) { + var g = d3_document.createElementNS(d3.ns.prefix.svg, "g"); + return (d3.transform = function(string) { + if (string != null) { + g.setAttribute("transform", string); + var t = g.transform.baseVal.consolidate(); + } + return new d3_transform(t ? t.matrix : d3_transformIdentity); + })(string); + }; + function d3_transform(m) { + var r0 = [ m.a, m.b ], r1 = [ m.c, m.d ], kx = d3_transformNormalize(r0), kz = d3_transformDot(r0, r1), ky = d3_transformNormalize(d3_transformCombine(r1, r0, -kz)) || 0; + if (r0[0] * r1[1] < r1[0] * r0[1]) { + r0[0] *= -1; + r0[1] *= -1; + kx *= -1; + kz *= -1; + } + this.rotate = (kx ? Math.atan2(r0[1], r0[0]) : Math.atan2(-r1[0], r1[1])) * d3_degrees; + this.translate = [ m.e, m.f ]; + this.scale = [ kx, ky ]; + this.skew = ky ? Math.atan2(kz, ky) * d3_degrees : 0; + } + d3_transform.prototype.toString = function() { + return "translate(" + this.translate + ")rotate(" + this.rotate + ")skewX(" + this.skew + ")scale(" + this.scale + ")"; + }; + function d3_transformDot(a, b) { + return a[0] * b[0] + a[1] * b[1]; + } + function d3_transformNormalize(a) { + var k = Math.sqrt(d3_transformDot(a, a)); + if (k) { + a[0] /= k; + a[1] /= k; + } + return k; + } + function d3_transformCombine(a, b, k) { + a[0] += k * b[0]; + a[1] += k * b[1]; + return a; + } + var d3_transformIdentity = { + a: 1, + b: 0, + c: 0, + d: 1, + e: 0, + f: 0 + }; + d3.interpolateTransform = d3_interpolateTransform; + function d3_interpolateTransform(a, b) { + var s = [], q = [], n, A = d3.transform(a), B = d3.transform(b), ta = A.translate, tb = B.translate, ra = A.rotate, rb = B.rotate, wa = A.skew, wb = B.skew, ka = A.scale, kb = B.scale; + if (ta[0] != tb[0] || ta[1] != tb[1]) { + s.push("translate(", null, ",", null, ")"); + q.push({ + i: 1, + x: d3_interpolateNumber(ta[0], tb[0]) + }, { + i: 3, + x: d3_interpolateNumber(ta[1], tb[1]) + }); + } else if (tb[0] || tb[1]) { + s.push("translate(" + tb + ")"); + } else { + s.push(""); + } + if (ra != rb) { + if (ra - rb > 180) rb += 360; else if (rb - ra > 180) ra += 360; + q.push({ + i: s.push(s.pop() + "rotate(", null, ")") - 2, + x: d3_interpolateNumber(ra, rb) + }); + } else if (rb) { + s.push(s.pop() + "rotate(" + rb + ")"); + } + if (wa != wb) { + q.push({ + i: s.push(s.pop() + "skewX(", null, ")") - 2, + x: d3_interpolateNumber(wa, wb) + }); + } else if (wb) { + s.push(s.pop() + "skewX(" + wb + ")"); + } + if (ka[0] != kb[0] || ka[1] != kb[1]) { + n = s.push(s.pop() + "scale(", null, ",", null, ")"); + q.push({ + i: n - 4, + x: d3_interpolateNumber(ka[0], kb[0]) + }, { + i: n - 2, + x: d3_interpolateNumber(ka[1], kb[1]) + }); + } else if (kb[0] != 1 || kb[1] != 1) { + s.push(s.pop() + "scale(" + kb + ")"); + } + n = q.length; + return function(t) { + var i = -1, o; + while (++i < n) s[(o = q[i]).i] = o.x(t); + return s.join(""); + }; + } + function d3_uninterpolateNumber(a, b) { + b = b - (a = +a) ? 1 / (b - a) : 0; + return function(x) { + return (x - a) * b; + }; + } + function d3_uninterpolateClamp(a, b) { + b = b - (a = +a) ? 1 / (b - a) : 0; + return function(x) { + return Math.max(0, Math.min(1, (x - a) * b)); + }; + } + d3.layout = {}; + d3.layout.bundle = function() { + return function(links) { + var paths = [], i = -1, n = links.length; + while (++i < n) paths.push(d3_layout_bundlePath(links[i])); + return paths; + }; + }; + function d3_layout_bundlePath(link) { + var start = link.source, end = link.target, lca = d3_layout_bundleLeastCommonAncestor(start, end), points = [ start ]; + while (start !== lca) { + start = start.parent; + points.push(start); + } + var k = points.length; + while (end !== lca) { + points.splice(k, 0, end); + end = end.parent; + } + return points; + } + function d3_layout_bundleAncestors(node) { + var ancestors = [], parent = node.parent; + while (parent != null) { + ancestors.push(node); + node = parent; + parent = parent.parent; + } + ancestors.push(node); + return ancestors; + } + function d3_layout_bundleLeastCommonAncestor(a, b) { + if (a === b) return a; + var aNodes = d3_layout_bundleAncestors(a), bNodes = d3_layout_bundleAncestors(b), aNode = aNodes.pop(), bNode = bNodes.pop(), sharedNode = null; + while (aNode === bNode) { + sharedNode = aNode; + aNode = aNodes.pop(); + bNode = bNodes.pop(); + } + return sharedNode; + } + d3.layout.chord = function() { + var chord = {}, chords, groups, matrix, n, padding = 0, sortGroups, sortSubgroups, sortChords; + function relayout() { + var subgroups = {}, groupSums = [], groupIndex = d3.range(n), subgroupIndex = [], k, x, x0, i, j; + chords = []; + groups = []; + k = 0, i = -1; + while (++i < n) { + x = 0, j = -1; + while (++j < n) { + x += matrix[i][j]; + } + groupSums.push(x); + subgroupIndex.push(d3.range(n)); + k += x; + } + if (sortGroups) { + groupIndex.sort(function(a, b) { + return sortGroups(groupSums[a], groupSums[b]); + }); + } + if (sortSubgroups) { + subgroupIndex.forEach(function(d, i) { + d.sort(function(a, b) { + return sortSubgroups(matrix[i][a], matrix[i][b]); + }); + }); + } + k = (τ - padding * n) / k; + x = 0, i = -1; + while (++i < n) { + x0 = x, j = -1; + while (++j < n) { + var di = groupIndex[i], dj = subgroupIndex[di][j], v = matrix[di][dj], a0 = x, a1 = x += v * k; + subgroups[di + "-" + dj] = { + index: di, + subindex: dj, + startAngle: a0, + endAngle: a1, + value: v + }; + } + groups[di] = { + index: di, + startAngle: x0, + endAngle: x, + value: (x - x0) / k + }; + x += padding; + } + i = -1; + while (++i < n) { + j = i - 1; + while (++j < n) { + var source = subgroups[i + "-" + j], target = subgroups[j + "-" + i]; + if (source.value || target.value) { + chords.push(source.value < target.value ? { + source: target, + target: source + } : { + source: source, + target: target + }); + } + } + } + if (sortChords) resort(); + } + function resort() { + chords.sort(function(a, b) { + return sortChords((a.source.value + a.target.value) / 2, (b.source.value + b.target.value) / 2); + }); + } + chord.matrix = function(x) { + if (!arguments.length) return matrix; + n = (matrix = x) && matrix.length; + chords = groups = null; + return chord; + }; + chord.padding = function(x) { + if (!arguments.length) return padding; + padding = x; + chords = groups = null; + return chord; + }; + chord.sortGroups = function(x) { + if (!arguments.length) return sortGroups; + sortGroups = x; + chords = groups = null; + return chord; + }; + chord.sortSubgroups = function(x) { + if (!arguments.length) return sortSubgroups; + sortSubgroups = x; + chords = null; + return chord; + }; + chord.sortChords = function(x) { + if (!arguments.length) return sortChords; + sortChords = x; + if (chords) resort(); + return chord; + }; + chord.chords = function() { + if (!chords) relayout(); + return chords; + }; + chord.groups = function() { + if (!groups) relayout(); + return groups; + }; + return chord; + }; + d3.layout.force = function() { + var force = {}, event = d3.dispatch("start", "tick", "end"), size = [ 1, 1 ], drag, alpha, friction = .9, linkDistance = d3_layout_forceLinkDistance, linkStrength = d3_layout_forceLinkStrength, charge = -30, chargeDistance2 = d3_layout_forceChargeDistance2, gravity = .1, theta2 = .64, nodes = [], links = [], distances, strengths, charges; + function repulse(node) { + return function(quad, x1, _, x2) { + if (quad.point !== node) { + var dx = quad.cx - node.x, dy = quad.cy - node.y, dw = x2 - x1, dn = dx * dx + dy * dy; + if (dw * dw / theta2 < dn) { + if (dn < chargeDistance2) { + var k = quad.charge / dn; + node.px -= dx * k; + node.py -= dy * k; + } + return true; + } + if (quad.point && dn && dn < chargeDistance2) { + var k = quad.pointCharge / dn; + node.px -= dx * k; + node.py -= dy * k; + } + } + return !quad.charge; + }; + } + force.tick = function() { + if ((alpha *= .99) < .005) { + event.end({ + type: "end", + alpha: alpha = 0 + }); + return true; + } + var n = nodes.length, m = links.length, q, i, o, s, t, l, k, x, y; + for (i = 0; i < m; ++i) { + o = links[i]; + s = o.source; + t = o.target; + x = t.x - s.x; + y = t.y - s.y; + if (l = x * x + y * y) { + l = alpha * strengths[i] * ((l = Math.sqrt(l)) - distances[i]) / l; + x *= l; + y *= l; + t.x -= x * (k = s.weight / (t.weight + s.weight)); + t.y -= y * k; + s.x += x * (k = 1 - k); + s.y += y * k; + } + } + if (k = alpha * gravity) { + x = size[0] / 2; + y = size[1] / 2; + i = -1; + if (k) while (++i < n) { + o = nodes[i]; + o.x += (x - o.x) * k; + o.y += (y - o.y) * k; + } + } + if (charge) { + d3_layout_forceAccumulate(q = d3.geom.quadtree(nodes), alpha, charges); + i = -1; + while (++i < n) { + if (!(o = nodes[i]).fixed) { + q.visit(repulse(o)); + } + } + } + i = -1; + while (++i < n) { + o = nodes[i]; + if (o.fixed) { + o.x = o.px; + o.y = o.py; + } else { + o.x -= (o.px - (o.px = o.x)) * friction; + o.y -= (o.py - (o.py = o.y)) * friction; + } + } + event.tick({ + type: "tick", + alpha: alpha + }); + }; + force.nodes = function(x) { + if (!arguments.length) return nodes; + nodes = x; + return force; + }; + force.links = function(x) { + if (!arguments.length) return links; + links = x; + return force; + }; + force.size = function(x) { + if (!arguments.length) return size; + size = x; + return force; + }; + force.linkDistance = function(x) { + if (!arguments.length) return linkDistance; + linkDistance = typeof x === "function" ? x : +x; + return force; + }; + force.distance = force.linkDistance; + force.linkStrength = function(x) { + if (!arguments.length) return linkStrength; + linkStrength = typeof x === "function" ? x : +x; + return force; + }; + force.friction = function(x) { + if (!arguments.length) return friction; + friction = +x; + return force; + }; + force.charge = function(x) { + if (!arguments.length) return charge; + charge = typeof x === "function" ? x : +x; + return force; + }; + force.chargeDistance = function(x) { + if (!arguments.length) return Math.sqrt(chargeDistance2); + chargeDistance2 = x * x; + return force; + }; + force.gravity = function(x) { + if (!arguments.length) return gravity; + gravity = +x; + return force; + }; + force.theta = function(x) { + if (!arguments.length) return Math.sqrt(theta2); + theta2 = x * x; + return force; + }; + force.alpha = function(x) { + if (!arguments.length) return alpha; + x = +x; + if (alpha) { + if (x > 0) alpha = x; else alpha = 0; + } else if (x > 0) { + event.start({ + type: "start", + alpha: alpha = x + }); + d3.timer(force.tick); + } + return force; + }; + force.start = function() { + var i, n = nodes.length, m = links.length, w = size[0], h = size[1], neighbors, o; + for (i = 0; i < n; ++i) { + (o = nodes[i]).index = i; + o.weight = 0; + } + for (i = 0; i < m; ++i) { + o = links[i]; + if (typeof o.source == "number") o.source = nodes[o.source]; + if (typeof o.target == "number") o.target = nodes[o.target]; + ++o.source.weight; + ++o.target.weight; + } + for (i = 0; i < n; ++i) { + o = nodes[i]; + if (isNaN(o.x)) o.x = position("x", w); + if (isNaN(o.y)) o.y = position("y", h); + if (isNaN(o.px)) o.px = o.x; + if (isNaN(o.py)) o.py = o.y; + } + distances = []; + if (typeof linkDistance === "function") for (i = 0; i < m; ++i) distances[i] = +linkDistance.call(this, links[i], i); else for (i = 0; i < m; ++i) distances[i] = linkDistance; + strengths = []; + if (typeof linkStrength === "function") for (i = 0; i < m; ++i) strengths[i] = +linkStrength.call(this, links[i], i); else for (i = 0; i < m; ++i) strengths[i] = linkStrength; + charges = []; + if (typeof charge === "function") for (i = 0; i < n; ++i) charges[i] = +charge.call(this, nodes[i], i); else for (i = 0; i < n; ++i) charges[i] = charge; + function position(dimension, size) { + if (!neighbors) { + neighbors = new Array(n); + for (j = 0; j < n; ++j) { + neighbors[j] = []; + } + for (j = 0; j < m; ++j) { + var o = links[j]; + neighbors[o.source.index].push(o.target); + neighbors[o.target.index].push(o.source); + } + } + var candidates = neighbors[i], j = -1, m = candidates.length, x; + while (++j < m) if (!isNaN(x = candidates[j][dimension])) return x; + return Math.random() * size; + } + return force.resume(); + }; + force.resume = function() { + return force.alpha(.1); + }; + force.stop = function() { + return force.alpha(0); + }; + force.drag = function() { + if (!drag) drag = d3.behavior.drag().origin(d3_identity).on("dragstart.force", d3_layout_forceDragstart).on("drag.force", dragmove).on("dragend.force", d3_layout_forceDragend); + if (!arguments.length) return drag; + this.on("mouseover.force", d3_layout_forceMouseover).on("mouseout.force", d3_layout_forceMouseout).call(drag); + }; + function dragmove(d) { + d.px = d3.event.x, d.py = d3.event.y; + force.resume(); + } + return d3.rebind(force, event, "on"); + }; + function d3_layout_forceDragstart(d) { + d.fixed |= 2; + } + function d3_layout_forceDragend(d) { + d.fixed &= ~6; + } + function d3_layout_forceMouseover(d) { + d.fixed |= 4; + d.px = d.x, d.py = d.y; + } + function d3_layout_forceMouseout(d) { + d.fixed &= ~4; + } + function d3_layout_forceAccumulate(quad, alpha, charges) { + var cx = 0, cy = 0; + quad.charge = 0; + if (!quad.leaf) { + var nodes = quad.nodes, n = nodes.length, i = -1, c; + while (++i < n) { + c = nodes[i]; + if (c == null) continue; + d3_layout_forceAccumulate(c, alpha, charges); + quad.charge += c.charge; + cx += c.charge * c.cx; + cy += c.charge * c.cy; + } + } + if (quad.point) { + if (!quad.leaf) { + quad.point.x += Math.random() - .5; + quad.point.y += Math.random() - .5; + } + var k = alpha * charges[quad.point.index]; + quad.charge += quad.pointCharge = k; + cx += k * quad.point.x; + cy += k * quad.point.y; + } + quad.cx = cx / quad.charge; + quad.cy = cy / quad.charge; + } + var d3_layout_forceLinkDistance = 20, d3_layout_forceLinkStrength = 1, d3_layout_forceChargeDistance2 = Infinity; + d3.layout.hierarchy = function() { + var sort = d3_layout_hierarchySort, children = d3_layout_hierarchyChildren, value = d3_layout_hierarchyValue; + function hierarchy(root) { + var stack = [ root ], nodes = [], node; + root.depth = 0; + while ((node = stack.pop()) != null) { + nodes.push(node); + if ((childs = children.call(hierarchy, node, node.depth)) && (n = childs.length)) { + var n, childs, child; + while (--n >= 0) { + stack.push(child = childs[n]); + child.parent = node; + child.depth = node.depth + 1; + } + if (value) node.value = 0; + node.children = childs; + } else { + if (value) node.value = +value.call(hierarchy, node, node.depth) || 0; + delete node.children; + } + } + d3_layout_hierarchyVisitAfter(root, function(node) { + var childs, parent; + if (sort && (childs = node.children)) childs.sort(sort); + if (value && (parent = node.parent)) parent.value += node.value; + }); + return nodes; + } + hierarchy.sort = function(x) { + if (!arguments.length) return sort; + sort = x; + return hierarchy; + }; + hierarchy.children = function(x) { + if (!arguments.length) return children; + children = x; + return hierarchy; + }; + hierarchy.value = function(x) { + if (!arguments.length) return value; + value = x; + return hierarchy; + }; + hierarchy.revalue = function(root) { + if (value) { + d3_layout_hierarchyVisitBefore(root, function(node) { + if (node.children) node.value = 0; + }); + d3_layout_hierarchyVisitAfter(root, function(node) { + var parent; + if (!node.children) node.value = +value.call(hierarchy, node, node.depth) || 0; + if (parent = node.parent) parent.value += node.value; + }); + } + return root; + }; + return hierarchy; + }; + function d3_layout_hierarchyRebind(object, hierarchy) { + d3.rebind(object, hierarchy, "sort", "children", "value"); + object.nodes = object; + object.links = d3_layout_hierarchyLinks; + return object; + } + function d3_layout_hierarchyVisitBefore(node, callback) { + var nodes = [ node ]; + while ((node = nodes.pop()) != null) { + callback(node); + if ((children = node.children) && (n = children.length)) { + var n, children; + while (--n >= 0) nodes.push(children[n]); + } + } + } + function d3_layout_hierarchyVisitAfter(node, callback) { + var nodes = [ node ], nodes2 = []; + while ((node = nodes.pop()) != null) { + nodes2.push(node); + if ((children = node.children) && (n = children.length)) { + var i = -1, n, children; + while (++i < n) nodes.push(children[i]); + } + } + while ((node = nodes2.pop()) != null) { + callback(node); + } + } + function d3_layout_hierarchyChildren(d) { + return d.children; + } + function d3_layout_hierarchyValue(d) { + return d.value; + } + function d3_layout_hierarchySort(a, b) { + return b.value - a.value; + } + function d3_layout_hierarchyLinks(nodes) { + return d3.merge(nodes.map(function(parent) { + return (parent.children || []).map(function(child) { + return { + source: parent, + target: child + }; + }); + })); + } + d3.layout.partition = function() { + var hierarchy = d3.layout.hierarchy(), size = [ 1, 1 ]; + function position(node, x, dx, dy) { + var children = node.children; + node.x = x; + node.y = node.depth * dy; + node.dx = dx; + node.dy = dy; + if (children && (n = children.length)) { + var i = -1, n, c, d; + dx = node.value ? dx / node.value : 0; + while (++i < n) { + position(c = children[i], x, d = c.value * dx, dy); + x += d; + } + } + } + function depth(node) { + var children = node.children, d = 0; + if (children && (n = children.length)) { + var i = -1, n; + while (++i < n) d = Math.max(d, depth(children[i])); + } + return 1 + d; + } + function partition(d, i) { + var nodes = hierarchy.call(this, d, i); + position(nodes[0], 0, size[0], size[1] / depth(nodes[0])); + return nodes; + } + partition.size = function(x) { + if (!arguments.length) return size; + size = x; + return partition; + }; + return d3_layout_hierarchyRebind(partition, hierarchy); + }; + d3.layout.pie = function() { + var value = Number, sort = d3_layout_pieSortByValue, startAngle = 0, endAngle = τ; + function pie(data) { + var values = data.map(function(d, i) { + return +value.call(pie, d, i); + }); + var a = +(typeof startAngle === "function" ? startAngle.apply(this, arguments) : startAngle); + var k = ((typeof endAngle === "function" ? endAngle.apply(this, arguments) : endAngle) - a) / d3.sum(values); + var index = d3.range(data.length); + if (sort != null) index.sort(sort === d3_layout_pieSortByValue ? function(i, j) { + return values[j] - values[i]; + } : function(i, j) { + return sort(data[i], data[j]); + }); + var arcs = []; + index.forEach(function(i) { + var d; + arcs[i] = { + data: data[i], + value: d = values[i], + startAngle: a, + endAngle: a += d * k + }; + }); + return arcs; + } + pie.value = function(x) { + if (!arguments.length) return value; + value = x; + return pie; + }; + pie.sort = function(x) { + if (!arguments.length) return sort; + sort = x; + return pie; + }; + pie.startAngle = function(x) { + if (!arguments.length) return startAngle; + startAngle = x; + return pie; + }; + pie.endAngle = function(x) { + if (!arguments.length) return endAngle; + endAngle = x; + return pie; + }; + return pie; + }; + var d3_layout_pieSortByValue = {}; + d3.layout.stack = function() { + var values = d3_identity, order = d3_layout_stackOrderDefault, offset = d3_layout_stackOffsetZero, out = d3_layout_stackOut, x = d3_layout_stackX, y = d3_layout_stackY; + function stack(data, index) { + var series = data.map(function(d, i) { + return values.call(stack, d, i); + }); + var points = series.map(function(d) { + return d.map(function(v, i) { + return [ x.call(stack, v, i), y.call(stack, v, i) ]; + }); + }); + var orders = order.call(stack, points, index); + series = d3.permute(series, orders); + points = d3.permute(points, orders); + var offsets = offset.call(stack, points, index); + var n = series.length, m = series[0].length, i, j, o; + for (j = 0; j < m; ++j) { + out.call(stack, series[0][j], o = offsets[j], points[0][j][1]); + for (i = 1; i < n; ++i) { + out.call(stack, series[i][j], o += points[i - 1][j][1], points[i][j][1]); + } + } + return data; + } + stack.values = function(x) { + if (!arguments.length) return values; + values = x; + return stack; + }; + stack.order = function(x) { + if (!arguments.length) return order; + order = typeof x === "function" ? x : d3_layout_stackOrders.get(x) || d3_layout_stackOrderDefault; + return stack; + }; + stack.offset = function(x) { + if (!arguments.length) return offset; + offset = typeof x === "function" ? x : d3_layout_stackOffsets.get(x) || d3_layout_stackOffsetZero; + return stack; + }; + stack.x = function(z) { + if (!arguments.length) return x; + x = z; + return stack; + }; + stack.y = function(z) { + if (!arguments.length) return y; + y = z; + return stack; + }; + stack.out = function(z) { + if (!arguments.length) return out; + out = z; + return stack; + }; + return stack; + }; + function d3_layout_stackX(d) { + return d.x; + } + function d3_layout_stackY(d) { + return d.y; + } + function d3_layout_stackOut(d, y0, y) { + d.y0 = y0; + d.y = y; + } + var d3_layout_stackOrders = d3.map({ + "inside-out": function(data) { + var n = data.length, i, j, max = data.map(d3_layout_stackMaxIndex), sums = data.map(d3_layout_stackReduceSum), index = d3.range(n).sort(function(a, b) { + return max[a] - max[b]; + }), top = 0, bottom = 0, tops = [], bottoms = []; + for (i = 0; i < n; ++i) { + j = index[i]; + if (top < bottom) { + top += sums[j]; + tops.push(j); + } else { + bottom += sums[j]; + bottoms.push(j); + } + } + return bottoms.reverse().concat(tops); + }, + reverse: function(data) { + return d3.range(data.length).reverse(); + }, + "default": d3_layout_stackOrderDefault + }); + var d3_layout_stackOffsets = d3.map({ + silhouette: function(data) { + var n = data.length, m = data[0].length, sums = [], max = 0, i, j, o, y0 = []; + for (j = 0; j < m; ++j) { + for (i = 0, o = 0; i < n; i++) o += data[i][j][1]; + if (o > max) max = o; + sums.push(o); + } + for (j = 0; j < m; ++j) { + y0[j] = (max - sums[j]) / 2; + } + return y0; + }, + wiggle: function(data) { + var n = data.length, x = data[0], m = x.length, i, j, k, s1, s2, s3, dx, o, o0, y0 = []; + y0[0] = o = o0 = 0; + for (j = 1; j < m; ++j) { + for (i = 0, s1 = 0; i < n; ++i) s1 += data[i][j][1]; + for (i = 0, s2 = 0, dx = x[j][0] - x[j - 1][0]; i < n; ++i) { + for (k = 0, s3 = (data[i][j][1] - data[i][j - 1][1]) / (2 * dx); k < i; ++k) { + s3 += (data[k][j][1] - data[k][j - 1][1]) / dx; + } + s2 += s3 * data[i][j][1]; + } + y0[j] = o -= s1 ? s2 / s1 * dx : 0; + if (o < o0) o0 = o; + } + for (j = 0; j < m; ++j) y0[j] -= o0; + return y0; + }, + expand: function(data) { + var n = data.length, m = data[0].length, k = 1 / n, i, j, o, y0 = []; + for (j = 0; j < m; ++j) { + for (i = 0, o = 0; i < n; i++) o += data[i][j][1]; + if (o) for (i = 0; i < n; i++) data[i][j][1] /= o; else for (i = 0; i < n; i++) data[i][j][1] = k; + } + for (j = 0; j < m; ++j) y0[j] = 0; + return y0; + }, + zero: d3_layout_stackOffsetZero + }); + function d3_layout_stackOrderDefault(data) { + return d3.range(data.length); + } + function d3_layout_stackOffsetZero(data) { + var j = -1, m = data[0].length, y0 = []; + while (++j < m) y0[j] = 0; + return y0; + } + function d3_layout_stackMaxIndex(array) { + var i = 1, j = 0, v = array[0][1], k, n = array.length; + for (;i < n; ++i) { + if ((k = array[i][1]) > v) { + j = i; + v = k; + } + } + return j; + } + function d3_layout_stackReduceSum(d) { + return d.reduce(d3_layout_stackSum, 0); + } + function d3_layout_stackSum(p, d) { + return p + d[1]; + } + d3.layout.histogram = function() { + var frequency = true, valuer = Number, ranger = d3_layout_histogramRange, binner = d3_layout_histogramBinSturges; + function histogram(data, i) { + var bins = [], values = data.map(valuer, this), range = ranger.call(this, values, i), thresholds = binner.call(this, range, values, i), bin, i = -1, n = values.length, m = thresholds.length - 1, k = frequency ? 1 : 1 / n, x; + while (++i < m) { + bin = bins[i] = []; + bin.dx = thresholds[i + 1] - (bin.x = thresholds[i]); + bin.y = 0; + } + if (m > 0) { + i = -1; + while (++i < n) { + x = values[i]; + if (x >= range[0] && x <= range[1]) { + bin = bins[d3.bisect(thresholds, x, 1, m) - 1]; + bin.y += k; + bin.push(data[i]); + } + } + } + return bins; + } + histogram.value = function(x) { + if (!arguments.length) return valuer; + valuer = x; + return histogram; + }; + histogram.range = function(x) { + if (!arguments.length) return ranger; + ranger = d3_functor(x); + return histogram; + }; + histogram.bins = function(x) { + if (!arguments.length) return binner; + binner = typeof x === "number" ? function(range) { + return d3_layout_histogramBinFixed(range, x); + } : d3_functor(x); + return histogram; + }; + histogram.frequency = function(x) { + if (!arguments.length) return frequency; + frequency = !!x; + return histogram; + }; + return histogram; + }; + function d3_layout_histogramBinSturges(range, values) { + return d3_layout_histogramBinFixed(range, Math.ceil(Math.log(values.length) / Math.LN2 + 1)); + } + function d3_layout_histogramBinFixed(range, n) { + var x = -1, b = +range[0], m = (range[1] - b) / n, f = []; + while (++x <= n) f[x] = m * x + b; + return f; + } + function d3_layout_histogramRange(values) { + return [ d3.min(values), d3.max(values) ]; + } + d3.layout.pack = function() { + var hierarchy = d3.layout.hierarchy().sort(d3_layout_packSort), padding = 0, size = [ 1, 1 ], radius; + function pack(d, i) { + var nodes = hierarchy.call(this, d, i), root = nodes[0], w = size[0], h = size[1], r = radius == null ? Math.sqrt : typeof radius === "function" ? radius : function() { + return radius; + }; + root.x = root.y = 0; + d3_layout_hierarchyVisitAfter(root, function(d) { + d.r = +r(d.value); + }); + d3_layout_hierarchyVisitAfter(root, d3_layout_packSiblings); + if (padding) { + var dr = padding * (radius ? 1 : Math.max(2 * root.r / w, 2 * root.r / h)) / 2; + d3_layout_hierarchyVisitAfter(root, function(d) { + d.r += dr; + }); + d3_layout_hierarchyVisitAfter(root, d3_layout_packSiblings); + d3_layout_hierarchyVisitAfter(root, function(d) { + d.r -= dr; + }); + } + d3_layout_packTransform(root, w / 2, h / 2, radius ? 1 : 1 / Math.max(2 * root.r / w, 2 * root.r / h)); + return nodes; + } + pack.size = function(_) { + if (!arguments.length) return size; + size = _; + return pack; + }; + pack.radius = function(_) { + if (!arguments.length) return radius; + radius = _ == null || typeof _ === "function" ? _ : +_; + return pack; + }; + pack.padding = function(_) { + if (!arguments.length) return padding; + padding = +_; + return pack; + }; + return d3_layout_hierarchyRebind(pack, hierarchy); + }; + function d3_layout_packSort(a, b) { + return a.value - b.value; + } + function d3_layout_packInsert(a, b) { + var c = a._pack_next; + a._pack_next = b; + b._pack_prev = a; + b._pack_next = c; + c._pack_prev = b; + } + function d3_layout_packSplice(a, b) { + a._pack_next = b; + b._pack_prev = a; + } + function d3_layout_packIntersects(a, b) { + var dx = b.x - a.x, dy = b.y - a.y, dr = a.r + b.r; + return .999 * dr * dr > dx * dx + dy * dy; + } + function d3_layout_packSiblings(node) { + if (!(nodes = node.children) || !(n = nodes.length)) return; + var nodes, xMin = Infinity, xMax = -Infinity, yMin = Infinity, yMax = -Infinity, a, b, c, i, j, k, n; + function bound(node) { + xMin = Math.min(node.x - node.r, xMin); + xMax = Math.max(node.x + node.r, xMax); + yMin = Math.min(node.y - node.r, yMin); + yMax = Math.max(node.y + node.r, yMax); + } + nodes.forEach(d3_layout_packLink); + a = nodes[0]; + a.x = -a.r; + a.y = 0; + bound(a); + if (n > 1) { + b = nodes[1]; + b.x = b.r; + b.y = 0; + bound(b); + if (n > 2) { + c = nodes[2]; + d3_layout_packPlace(a, b, c); + bound(c); + d3_layout_packInsert(a, c); + a._pack_prev = c; + d3_layout_packInsert(c, b); + b = a._pack_next; + for (i = 3; i < n; i++) { + d3_layout_packPlace(a, b, c = nodes[i]); + var isect = 0, s1 = 1, s2 = 1; + for (j = b._pack_next; j !== b; j = j._pack_next, s1++) { + if (d3_layout_packIntersects(j, c)) { + isect = 1; + break; + } + } + if (isect == 1) { + for (k = a._pack_prev; k !== j._pack_prev; k = k._pack_prev, s2++) { + if (d3_layout_packIntersects(k, c)) { + break; + } + } + } + if (isect) { + if (s1 < s2 || s1 == s2 && b.r < a.r) d3_layout_packSplice(a, b = j); else d3_layout_packSplice(a = k, b); + i--; + } else { + d3_layout_packInsert(a, c); + b = c; + bound(c); + } + } + } + } + var cx = (xMin + xMax) / 2, cy = (yMin + yMax) / 2, cr = 0; + for (i = 0; i < n; i++) { + c = nodes[i]; + c.x -= cx; + c.y -= cy; + cr = Math.max(cr, c.r + Math.sqrt(c.x * c.x + c.y * c.y)); + } + node.r = cr; + nodes.forEach(d3_layout_packUnlink); + } + function d3_layout_packLink(node) { + node._pack_next = node._pack_prev = node; + } + function d3_layout_packUnlink(node) { + delete node._pack_next; + delete node._pack_prev; + } + function d3_layout_packTransform(node, x, y, k) { + var children = node.children; + node.x = x += k * node.x; + node.y = y += k * node.y; + node.r *= k; + if (children) { + var i = -1, n = children.length; + while (++i < n) d3_layout_packTransform(children[i], x, y, k); + } + } + function d3_layout_packPlace(a, b, c) { + var db = a.r + c.r, dx = b.x - a.x, dy = b.y - a.y; + if (db && (dx || dy)) { + var da = b.r + c.r, dc = dx * dx + dy * dy; + da *= da; + db *= db; + var x = .5 + (db - da) / (2 * dc), y = Math.sqrt(Math.max(0, 2 * da * (db + dc) - (db -= dc) * db - da * da)) / (2 * dc); + c.x = a.x + x * dx + y * dy; + c.y = a.y + x * dy - y * dx; + } else { + c.x = a.x + db; + c.y = a.y; + } + } + d3.layout.tree = function() { + var hierarchy = d3.layout.hierarchy().sort(null).value(null), separation = d3_layout_treeSeparation, size = [ 1, 1 ], nodeSize = null; + function tree(d, i) { + var nodes = hierarchy.call(this, d, i), root0 = nodes[0], root1 = wrapTree(root0); + d3_layout_hierarchyVisitAfter(root1, firstWalk), root1.parent.m = -root1.z; + d3_layout_hierarchyVisitBefore(root1, secondWalk); + if (nodeSize) d3_layout_hierarchyVisitBefore(root0, sizeNode); else { + var left = root0, right = root0, bottom = root0; + d3_layout_hierarchyVisitBefore(root0, function(node) { + if (node.x < left.x) left = node; + if (node.x > right.x) right = node; + if (node.depth > bottom.depth) bottom = node; + }); + var tx = separation(left, right) / 2 - left.x, kx = size[0] / (right.x + separation(right, left) / 2 + tx), ky = size[1] / (bottom.depth || 1); + d3_layout_hierarchyVisitBefore(root0, function(node) { + node.x = (node.x + tx) * kx; + node.y = node.depth * ky; + }); + } + return nodes; + } + function wrapTree(root0) { + var root1 = { + A: null, + children: [ root0 ] + }, queue = [ root1 ], node1; + while ((node1 = queue.pop()) != null) { + for (var children = node1.children, child, i = 0, n = children.length; i < n; ++i) { + queue.push((children[i] = child = { + _: children[i], + parent: node1, + children: (child = children[i].children) && child.slice() || [], + A: null, + a: null, + z: 0, + m: 0, + c: 0, + s: 0, + t: null, + i: i + }).a = child); + } + } + return root1.children[0]; + } + function firstWalk(v) { + var children = v.children, siblings = v.parent.children, w = v.i ? siblings[v.i - 1] : null; + if (children.length) { + d3_layout_treeShift(v); + var midpoint = (children[0].z + children[children.length - 1].z) / 2; + if (w) { + v.z = w.z + separation(v._, w._); + v.m = v.z - midpoint; + } else { + v.z = midpoint; + } + } else if (w) { + v.z = w.z + separation(v._, w._); + } + v.parent.A = apportion(v, w, v.parent.A || siblings[0]); + } + function secondWalk(v) { + v._.x = v.z + v.parent.m; + v.m += v.parent.m; + } + function apportion(v, w, ancestor) { + if (w) { + var vip = v, vop = v, vim = w, vom = vip.parent.children[0], sip = vip.m, sop = vop.m, sim = vim.m, som = vom.m, shift; + while (vim = d3_layout_treeRight(vim), vip = d3_layout_treeLeft(vip), vim && vip) { + vom = d3_layout_treeLeft(vom); + vop = d3_layout_treeRight(vop); + vop.a = v; + shift = vim.z + sim - vip.z - sip + separation(vim._, vip._); + if (shift > 0) { + d3_layout_treeMove(d3_layout_treeAncestor(vim, v, ancestor), v, shift); + sip += shift; + sop += shift; + } + sim += vim.m; + sip += vip.m; + som += vom.m; + sop += vop.m; + } + if (vim && !d3_layout_treeRight(vop)) { + vop.t = vim; + vop.m += sim - sop; + } + if (vip && !d3_layout_treeLeft(vom)) { + vom.t = vip; + vom.m += sip - som; + ancestor = v; + } + } + return ancestor; + } + function sizeNode(node) { + node.x *= size[0]; + node.y = node.depth * size[1]; + } + tree.separation = function(x) { + if (!arguments.length) return separation; + separation = x; + return tree; + }; + tree.size = function(x) { + if (!arguments.length) return nodeSize ? null : size; + nodeSize = (size = x) == null ? sizeNode : null; + return tree; + }; + tree.nodeSize = function(x) { + if (!arguments.length) return nodeSize ? size : null; + nodeSize = (size = x) == null ? null : sizeNode; + return tree; + }; + return d3_layout_hierarchyRebind(tree, hierarchy); + }; + function d3_layout_treeSeparation(a, b) { + return a.parent == b.parent ? 1 : 2; + } + function d3_layout_treeLeft(v) { + var children = v.children; + return children.length ? children[0] : v.t; + } + function d3_layout_treeRight(v) { + var children = v.children, n; + return (n = children.length) ? children[n - 1] : v.t; + } + function d3_layout_treeMove(wm, wp, shift) { + var change = shift / (wp.i - wm.i); + wp.c -= change; + wp.s += shift; + wm.c += change; + wp.z += shift; + wp.m += shift; + } + function d3_layout_treeShift(v) { + var shift = 0, change = 0, children = v.children, i = children.length, w; + while (--i >= 0) { + w = children[i]; + w.z += shift; + w.m += shift; + shift += w.s + (change += w.c); + } + } + function d3_layout_treeAncestor(vim, v, ancestor) { + return vim.a.parent === v.parent ? vim.a : ancestor; + } + d3.layout.cluster = function() { + var hierarchy = d3.layout.hierarchy().sort(null).value(null), separation = d3_layout_treeSeparation, size = [ 1, 1 ], nodeSize = false; + function cluster(d, i) { + var nodes = hierarchy.call(this, d, i), root = nodes[0], previousNode, x = 0; + d3_layout_hierarchyVisitAfter(root, function(node) { + var children = node.children; + if (children && children.length) { + node.x = d3_layout_clusterX(children); + node.y = d3_layout_clusterY(children); + } else { + node.x = previousNode ? x += separation(node, previousNode) : 0; + node.y = 0; + previousNode = node; + } + }); + var left = d3_layout_clusterLeft(root), right = d3_layout_clusterRight(root), x0 = left.x - separation(left, right) / 2, x1 = right.x + separation(right, left) / 2; + d3_layout_hierarchyVisitAfter(root, nodeSize ? function(node) { + node.x = (node.x - root.x) * size[0]; + node.y = (root.y - node.y) * size[1]; + } : function(node) { + node.x = (node.x - x0) / (x1 - x0) * size[0]; + node.y = (1 - (root.y ? node.y / root.y : 1)) * size[1]; + }); + return nodes; + } + cluster.separation = function(x) { + if (!arguments.length) return separation; + separation = x; + return cluster; + }; + cluster.size = function(x) { + if (!arguments.length) return nodeSize ? null : size; + nodeSize = (size = x) == null; + return cluster; + }; + cluster.nodeSize = function(x) { + if (!arguments.length) return nodeSize ? size : null; + nodeSize = (size = x) != null; + return cluster; + }; + return d3_layout_hierarchyRebind(cluster, hierarchy); + }; + function d3_layout_clusterY(children) { + return 1 + d3.max(children, function(child) { + return child.y; + }); + } + function d3_layout_clusterX(children) { + return children.reduce(function(x, child) { + return x + child.x; + }, 0) / children.length; + } + function d3_layout_clusterLeft(node) { + var children = node.children; + return children && children.length ? d3_layout_clusterLeft(children[0]) : node; + } + function d3_layout_clusterRight(node) { + var children = node.children, n; + return children && (n = children.length) ? d3_layout_clusterRight(children[n - 1]) : node; + } + d3.layout.treemap = function() { + var hierarchy = d3.layout.hierarchy(), round = Math.round, size = [ 1, 1 ], padding = null, pad = d3_layout_treemapPadNull, sticky = false, stickies, mode = "squarify", ratio = .5 * (1 + Math.sqrt(5)); + function scale(children, k) { + var i = -1, n = children.length, child, area; + while (++i < n) { + area = (child = children[i]).value * (k < 0 ? 0 : k); + child.area = isNaN(area) || area <= 0 ? 0 : area; + } + } + function squarify(node) { + var children = node.children; + if (children && children.length) { + var rect = pad(node), row = [], remaining = children.slice(), child, best = Infinity, score, u = mode === "slice" ? rect.dx : mode === "dice" ? rect.dy : mode === "slice-dice" ? node.depth & 1 ? rect.dy : rect.dx : Math.min(rect.dx, rect.dy), n; + scale(remaining, rect.dx * rect.dy / node.value); + row.area = 0; + while ((n = remaining.length) > 0) { + row.push(child = remaining[n - 1]); + row.area += child.area; + if (mode !== "squarify" || (score = worst(row, u)) <= best) { + remaining.pop(); + best = score; + } else { + row.area -= row.pop().area; + position(row, u, rect, false); + u = Math.min(rect.dx, rect.dy); + row.length = row.area = 0; + best = Infinity; + } + } + if (row.length) { + position(row, u, rect, true); + row.length = row.area = 0; + } + children.forEach(squarify); + } + } + function stickify(node) { + var children = node.children; + if (children && children.length) { + var rect = pad(node), remaining = children.slice(), child, row = []; + scale(remaining, rect.dx * rect.dy / node.value); + row.area = 0; + while (child = remaining.pop()) { + row.push(child); + row.area += child.area; + if (child.z != null) { + position(row, child.z ? rect.dx : rect.dy, rect, !remaining.length); + row.length = row.area = 0; + } + } + children.forEach(stickify); + } + } + function worst(row, u) { + var s = row.area, r, rmax = 0, rmin = Infinity, i = -1, n = row.length; + while (++i < n) { + if (!(r = row[i].area)) continue; + if (r < rmin) rmin = r; + if (r > rmax) rmax = r; + } + s *= s; + u *= u; + return s ? Math.max(u * rmax * ratio / s, s / (u * rmin * ratio)) : Infinity; + } + function position(row, u, rect, flush) { + var i = -1, n = row.length, x = rect.x, y = rect.y, v = u ? round(row.area / u) : 0, o; + if (u == rect.dx) { + if (flush || v > rect.dy) v = rect.dy; + while (++i < n) { + o = row[i]; + o.x = x; + o.y = y; + o.dy = v; + x += o.dx = Math.min(rect.x + rect.dx - x, v ? round(o.area / v) : 0); + } + o.z = true; + o.dx += rect.x + rect.dx - x; + rect.y += v; + rect.dy -= v; + } else { + if (flush || v > rect.dx) v = rect.dx; + while (++i < n) { + o = row[i]; + o.x = x; + o.y = y; + o.dx = v; + y += o.dy = Math.min(rect.y + rect.dy - y, v ? round(o.area / v) : 0); + } + o.z = false; + o.dy += rect.y + rect.dy - y; + rect.x += v; + rect.dx -= v; + } + } + function treemap(d) { + var nodes = stickies || hierarchy(d), root = nodes[0]; + root.x = 0; + root.y = 0; + root.dx = size[0]; + root.dy = size[1]; + if (stickies) hierarchy.revalue(root); + scale([ root ], root.dx * root.dy / root.value); + (stickies ? stickify : squarify)(root); + if (sticky) stickies = nodes; + return nodes; + } + treemap.size = function(x) { + if (!arguments.length) return size; + size = x; + return treemap; + }; + treemap.padding = function(x) { + if (!arguments.length) return padding; + function padFunction(node) { + var p = x.call(treemap, node, node.depth); + return p == null ? d3_layout_treemapPadNull(node) : d3_layout_treemapPad(node, typeof p === "number" ? [ p, p, p, p ] : p); + } + function padConstant(node) { + return d3_layout_treemapPad(node, x); + } + var type; + pad = (padding = x) == null ? d3_layout_treemapPadNull : (type = typeof x) === "function" ? padFunction : type === "number" ? (x = [ x, x, x, x ], + padConstant) : padConstant; + return treemap; + }; + treemap.round = function(x) { + if (!arguments.length) return round != Number; + round = x ? Math.round : Number; + return treemap; + }; + treemap.sticky = function(x) { + if (!arguments.length) return sticky; + sticky = x; + stickies = null; + return treemap; + }; + treemap.ratio = function(x) { + if (!arguments.length) return ratio; + ratio = x; + return treemap; + }; + treemap.mode = function(x) { + if (!arguments.length) return mode; + mode = x + ""; + return treemap; + }; + return d3_layout_hierarchyRebind(treemap, hierarchy); + }; + function d3_layout_treemapPadNull(node) { + return { + x: node.x, + y: node.y, + dx: node.dx, + dy: node.dy + }; + } + function d3_layout_treemapPad(node, padding) { + var x = node.x + padding[3], y = node.y + padding[0], dx = node.dx - padding[1] - padding[3], dy = node.dy - padding[0] - padding[2]; + if (dx < 0) { + x += dx / 2; + dx = 0; + } + if (dy < 0) { + y += dy / 2; + dy = 0; + } + return { + x: x, + y: y, + dx: dx, + dy: dy + }; + } + d3.random = { + normal: function(µ, σ) { + var n = arguments.length; + if (n < 2) σ = 1; + if (n < 1) µ = 0; + return function() { + var x, y, r; + do { + x = Math.random() * 2 - 1; + y = Math.random() * 2 - 1; + r = x * x + y * y; + } while (!r || r > 1); + return µ + σ * x * Math.sqrt(-2 * Math.log(r) / r); + }; + }, + logNormal: function() { + var random = d3.random.normal.apply(d3, arguments); + return function() { + return Math.exp(random()); + }; + }, + bates: function(m) { + var random = d3.random.irwinHall(m); + return function() { + return random() / m; + }; + }, + irwinHall: function(m) { + return function() { + for (var s = 0, j = 0; j < m; j++) s += Math.random(); + return s; + }; + } + }; + d3.scale = {}; + function d3_scaleExtent(domain) { + var start = domain[0], stop = domain[domain.length - 1]; + return start < stop ? [ start, stop ] : [ stop, start ]; + } + function d3_scaleRange(scale) { + return scale.rangeExtent ? scale.rangeExtent() : d3_scaleExtent(scale.range()); + } + function d3_scale_bilinear(domain, range, uninterpolate, interpolate) { + var u = uninterpolate(domain[0], domain[1]), i = interpolate(range[0], range[1]); + return function(x) { + return i(u(x)); + }; + } + function d3_scale_nice(domain, nice) { + var i0 = 0, i1 = domain.length - 1, x0 = domain[i0], x1 = domain[i1], dx; + if (x1 < x0) { + dx = i0, i0 = i1, i1 = dx; + dx = x0, x0 = x1, x1 = dx; + } + domain[i0] = nice.floor(x0); + domain[i1] = nice.ceil(x1); + return domain; + } + function d3_scale_niceStep(step) { + return step ? { + floor: function(x) { + return Math.floor(x / step) * step; + }, + ceil: function(x) { + return Math.ceil(x / step) * step; + } + } : d3_scale_niceIdentity; + } + var d3_scale_niceIdentity = { + floor: d3_identity, + ceil: d3_identity + }; + function d3_scale_polylinear(domain, range, uninterpolate, interpolate) { + var u = [], i = [], j = 0, k = Math.min(domain.length, range.length) - 1; + if (domain[k] < domain[0]) { + domain = domain.slice().reverse(); + range = range.slice().reverse(); + } + while (++j <= k) { + u.push(uninterpolate(domain[j - 1], domain[j])); + i.push(interpolate(range[j - 1], range[j])); + } + return function(x) { + var j = d3.bisect(domain, x, 1, k) - 1; + return i[j](u[j](x)); + }; + } + d3.scale.linear = function() { + return d3_scale_linear([ 0, 1 ], [ 0, 1 ], d3_interpolate, false); + }; + function d3_scale_linear(domain, range, interpolate, clamp) { + var output, input; + function rescale() { + var linear = Math.min(domain.length, range.length) > 2 ? d3_scale_polylinear : d3_scale_bilinear, uninterpolate = clamp ? d3_uninterpolateClamp : d3_uninterpolateNumber; + output = linear(domain, range, uninterpolate, interpolate); + input = linear(range, domain, uninterpolate, d3_interpolate); + return scale; + } + function scale(x) { + return output(x); + } + scale.invert = function(y) { + return input(y); + }; + scale.domain = function(x) { + if (!arguments.length) return domain; + domain = x.map(Number); + return rescale(); + }; + scale.range = function(x) { + if (!arguments.length) return range; + range = x; + return rescale(); + }; + scale.rangeRound = function(x) { + return scale.range(x).interpolate(d3_interpolateRound); + }; + scale.clamp = function(x) { + if (!arguments.length) return clamp; + clamp = x; + return rescale(); + }; + scale.interpolate = function(x) { + if (!arguments.length) return interpolate; + interpolate = x; + return rescale(); + }; + scale.ticks = function(m) { + return d3_scale_linearTicks(domain, m); + }; + scale.tickFormat = function(m, format) { + return d3_scale_linearTickFormat(domain, m, format); + }; + scale.nice = function(m) { + d3_scale_linearNice(domain, m); + return rescale(); + }; + scale.copy = function() { + return d3_scale_linear(domain, range, interpolate, clamp); + }; + return rescale(); + } + function d3_scale_linearRebind(scale, linear) { + return d3.rebind(scale, linear, "range", "rangeRound", "interpolate", "clamp"); + } + function d3_scale_linearNice(domain, m) { + return d3_scale_nice(domain, d3_scale_niceStep(d3_scale_linearTickRange(domain, m)[2])); + } + function d3_scale_linearTickRange(domain, m) { + if (m == null) m = 10; + var extent = d3_scaleExtent(domain), span = extent[1] - extent[0], step = Math.pow(10, Math.floor(Math.log(span / m) / Math.LN10)), err = m / span * step; + if (err <= .15) step *= 10; else if (err <= .35) step *= 5; else if (err <= .75) step *= 2; + extent[0] = Math.ceil(extent[0] / step) * step; + extent[1] = Math.floor(extent[1] / step) * step + step * .5; + extent[2] = step; + return extent; + } + function d3_scale_linearTicks(domain, m) { + return d3.range.apply(d3, d3_scale_linearTickRange(domain, m)); + } + function d3_scale_linearTickFormat(domain, m, format) { + var range = d3_scale_linearTickRange(domain, m); + if (format) { + var match = d3_format_re.exec(format); + match.shift(); + if (match[8] === "s") { + var prefix = d3.formatPrefix(Math.max(abs(range[0]), abs(range[1]))); + if (!match[7]) match[7] = "." + d3_scale_linearPrecision(prefix.scale(range[2])); + match[8] = "f"; + format = d3.format(match.join("")); + return function(d) { + return format(prefix.scale(d)) + prefix.symbol; + }; + } + if (!match[7]) match[7] = "." + d3_scale_linearFormatPrecision(match[8], range); + format = match.join(""); + } else { + format = ",." + d3_scale_linearPrecision(range[2]) + "f"; + } + return d3.format(format); + } + var d3_scale_linearFormatSignificant = { + s: 1, + g: 1, + p: 1, + r: 1, + e: 1 + }; + function d3_scale_linearPrecision(value) { + return -Math.floor(Math.log(value) / Math.LN10 + .01); + } + function d3_scale_linearFormatPrecision(type, range) { + var p = d3_scale_linearPrecision(range[2]); + return type in d3_scale_linearFormatSignificant ? Math.abs(p - d3_scale_linearPrecision(Math.max(abs(range[0]), abs(range[1])))) + +(type !== "e") : p - (type === "%") * 2; + } + d3.scale.log = function() { + return d3_scale_log(d3.scale.linear().domain([ 0, 1 ]), 10, true, [ 1, 10 ]); + }; + function d3_scale_log(linear, base, positive, domain) { + function log(x) { + return (positive ? Math.log(x < 0 ? 0 : x) : -Math.log(x > 0 ? 0 : -x)) / Math.log(base); + } + function pow(x) { + return positive ? Math.pow(base, x) : -Math.pow(base, -x); + } + function scale(x) { + return linear(log(x)); + } + scale.invert = function(x) { + return pow(linear.invert(x)); + }; + scale.domain = function(x) { + if (!arguments.length) return domain; + positive = x[0] >= 0; + linear.domain((domain = x.map(Number)).map(log)); + return scale; + }; + scale.base = function(_) { + if (!arguments.length) return base; + base = +_; + linear.domain(domain.map(log)); + return scale; + }; + scale.nice = function() { + var niced = d3_scale_nice(domain.map(log), positive ? Math : d3_scale_logNiceNegative); + linear.domain(niced); + domain = niced.map(pow); + return scale; + }; + scale.ticks = function() { + var extent = d3_scaleExtent(domain), ticks = [], u = extent[0], v = extent[1], i = Math.floor(log(u)), j = Math.ceil(log(v)), n = base % 1 ? 2 : base; + if (isFinite(j - i)) { + if (positive) { + for (;i < j; i++) for (var k = 1; k < n; k++) ticks.push(pow(i) * k); + ticks.push(pow(i)); + } else { + ticks.push(pow(i)); + for (;i++ < j; ) for (var k = n - 1; k > 0; k--) ticks.push(pow(i) * k); + } + for (i = 0; ticks[i] < u; i++) {} + for (j = ticks.length; ticks[j - 1] > v; j--) {} + ticks = ticks.slice(i, j); + } + return ticks; + }; + scale.tickFormat = function(n, format) { + if (!arguments.length) return d3_scale_logFormat; + if (arguments.length < 2) format = d3_scale_logFormat; else if (typeof format !== "function") format = d3.format(format); + var k = Math.max(.1, n / scale.ticks().length), f = positive ? (e = 1e-12, Math.ceil) : (e = -1e-12, + Math.floor), e; + return function(d) { + return d / pow(f(log(d) + e)) <= k ? format(d) : ""; + }; + }; + scale.copy = function() { + return d3_scale_log(linear.copy(), base, positive, domain); + }; + return d3_scale_linearRebind(scale, linear); + } + var d3_scale_logFormat = d3.format(".0e"), d3_scale_logNiceNegative = { + floor: function(x) { + return -Math.ceil(-x); + }, + ceil: function(x) { + return -Math.floor(-x); + } + }; + d3.scale.pow = function() { + return d3_scale_pow(d3.scale.linear(), 1, [ 0, 1 ]); + }; + function d3_scale_pow(linear, exponent, domain) { + var powp = d3_scale_powPow(exponent), powb = d3_scale_powPow(1 / exponent); + function scale(x) { + return linear(powp(x)); + } + scale.invert = function(x) { + return powb(linear.invert(x)); + }; + scale.domain = function(x) { + if (!arguments.length) return domain; + linear.domain((domain = x.map(Number)).map(powp)); + return scale; + }; + scale.ticks = function(m) { + return d3_scale_linearTicks(domain, m); + }; + scale.tickFormat = function(m, format) { + return d3_scale_linearTickFormat(domain, m, format); + }; + scale.nice = function(m) { + return scale.domain(d3_scale_linearNice(domain, m)); + }; + scale.exponent = function(x) { + if (!arguments.length) return exponent; + powp = d3_scale_powPow(exponent = x); + powb = d3_scale_powPow(1 / exponent); + linear.domain(domain.map(powp)); + return scale; + }; + scale.copy = function() { + return d3_scale_pow(linear.copy(), exponent, domain); + }; + return d3_scale_linearRebind(scale, linear); + } + function d3_scale_powPow(e) { + return function(x) { + return x < 0 ? -Math.pow(-x, e) : Math.pow(x, e); + }; + } + d3.scale.sqrt = function() { + return d3.scale.pow().exponent(.5); + }; + d3.scale.ordinal = function() { + return d3_scale_ordinal([], { + t: "range", + a: [ [] ] + }); + }; + function d3_scale_ordinal(domain, ranger) { + var index, range, rangeBand; + function scale(x) { + return range[((index.get(x) || (ranger.t === "range" ? index.set(x, domain.push(x)) : NaN)) - 1) % range.length]; + } + function steps(start, step) { + return d3.range(domain.length).map(function(i) { + return start + step * i; + }); + } + scale.domain = function(x) { + if (!arguments.length) return domain; + domain = []; + index = new d3_Map(); + var i = -1, n = x.length, xi; + while (++i < n) if (!index.has(xi = x[i])) index.set(xi, domain.push(xi)); + return scale[ranger.t].apply(scale, ranger.a); + }; + scale.range = function(x) { + if (!arguments.length) return range; + range = x; + rangeBand = 0; + ranger = { + t: "range", + a: arguments + }; + return scale; + }; + scale.rangePoints = function(x, padding) { + if (arguments.length < 2) padding = 0; + var start = x[0], stop = x[1], step = (stop - start) / (Math.max(1, domain.length - 1) + padding); + range = steps(domain.length < 2 ? (start + stop) / 2 : start + step * padding / 2, step); + rangeBand = 0; + ranger = { + t: "rangePoints", + a: arguments + }; + return scale; + }; + scale.rangeBands = function(x, padding, outerPadding) { + if (arguments.length < 2) padding = 0; + if (arguments.length < 3) outerPadding = padding; + var reverse = x[1] < x[0], start = x[reverse - 0], stop = x[1 - reverse], step = (stop - start) / (domain.length - padding + 2 * outerPadding); + range = steps(start + step * outerPadding, step); + if (reverse) range.reverse(); + rangeBand = step * (1 - padding); + ranger = { + t: "rangeBands", + a: arguments + }; + return scale; + }; + scale.rangeRoundBands = function(x, padding, outerPadding) { + if (arguments.length < 2) padding = 0; + if (arguments.length < 3) outerPadding = padding; + var reverse = x[1] < x[0], start = x[reverse - 0], stop = x[1 - reverse], step = Math.floor((stop - start) / (domain.length - padding + 2 * outerPadding)), error = stop - start - (domain.length - padding) * step; + range = steps(start + Math.round(error / 2), step); + if (reverse) range.reverse(); + rangeBand = Math.round(step * (1 - padding)); + ranger = { + t: "rangeRoundBands", + a: arguments + }; + return scale; + }; + scale.rangeBand = function() { + return rangeBand; + }; + scale.rangeExtent = function() { + return d3_scaleExtent(ranger.a[0]); + }; + scale.copy = function() { + return d3_scale_ordinal(domain, ranger); + }; + return scale.domain(domain); + } + d3.scale.category10 = function() { + return d3.scale.ordinal().range(d3_category10); + }; + d3.scale.category20 = function() { + return d3.scale.ordinal().range(d3_category20); + }; + d3.scale.category20b = function() { + return d3.scale.ordinal().range(d3_category20b); + }; + d3.scale.category20c = function() { + return d3.scale.ordinal().range(d3_category20c); + }; + var d3_category10 = [ 2062260, 16744206, 2924588, 14034728, 9725885, 9197131, 14907330, 8355711, 12369186, 1556175 ].map(d3_rgbString); + var d3_category20 = [ 2062260, 11454440, 16744206, 16759672, 2924588, 10018698, 14034728, 16750742, 9725885, 12955861, 9197131, 12885140, 14907330, 16234194, 8355711, 13092807, 12369186, 14408589, 1556175, 10410725 ].map(d3_rgbString); + var d3_category20b = [ 3750777, 5395619, 7040719, 10264286, 6519097, 9216594, 11915115, 13556636, 9202993, 12426809, 15186514, 15190932, 8666169, 11356490, 14049643, 15177372, 8077683, 10834324, 13528509, 14589654 ].map(d3_rgbString); + var d3_category20c = [ 3244733, 7057110, 10406625, 13032431, 15095053, 16616764, 16625259, 16634018, 3253076, 7652470, 10607003, 13101504, 7695281, 10394312, 12369372, 14342891, 6513507, 9868950, 12434877, 14277081 ].map(d3_rgbString); + d3.scale.quantile = function() { + return d3_scale_quantile([], []); + }; + function d3_scale_quantile(domain, range) { + var thresholds; + function rescale() { + var k = 0, q = range.length; + thresholds = []; + while (++k < q) thresholds[k - 1] = d3.quantile(domain, k / q); + return scale; + } + function scale(x) { + if (!isNaN(x = +x)) return range[d3.bisect(thresholds, x)]; + } + scale.domain = function(x) { + if (!arguments.length) return domain; + domain = x.filter(d3_number).sort(d3_ascending); + return rescale(); + }; + scale.range = function(x) { + if (!arguments.length) return range; + range = x; + return rescale(); + }; + scale.quantiles = function() { + return thresholds; + }; + scale.invertExtent = function(y) { + y = range.indexOf(y); + return y < 0 ? [ NaN, NaN ] : [ y > 0 ? thresholds[y - 1] : domain[0], y < thresholds.length ? thresholds[y] : domain[domain.length - 1] ]; + }; + scale.copy = function() { + return d3_scale_quantile(domain, range); + }; + return rescale(); + } + d3.scale.quantize = function() { + return d3_scale_quantize(0, 1, [ 0, 1 ]); + }; + function d3_scale_quantize(x0, x1, range) { + var kx, i; + function scale(x) { + return range[Math.max(0, Math.min(i, Math.floor(kx * (x - x0))))]; + } + function rescale() { + kx = range.length / (x1 - x0); + i = range.length - 1; + return scale; + } + scale.domain = function(x) { + if (!arguments.length) return [ x0, x1 ]; + x0 = +x[0]; + x1 = +x[x.length - 1]; + return rescale(); + }; + scale.range = function(x) { + if (!arguments.length) return range; + range = x; + return rescale(); + }; + scale.invertExtent = function(y) { + y = range.indexOf(y); + y = y < 0 ? NaN : y / kx + x0; + return [ y, y + 1 / kx ]; + }; + scale.copy = function() { + return d3_scale_quantize(x0, x1, range); + }; + return rescale(); + } + d3.scale.threshold = function() { + return d3_scale_threshold([ .5 ], [ 0, 1 ]); + }; + function d3_scale_threshold(domain, range) { + function scale(x) { + if (x <= x) return range[d3.bisect(domain, x)]; + } + scale.domain = function(_) { + if (!arguments.length) return domain; + domain = _; + return scale; + }; + scale.range = function(_) { + if (!arguments.length) return range; + range = _; + return scale; + }; + scale.invertExtent = function(y) { + y = range.indexOf(y); + return [ domain[y - 1], domain[y] ]; + }; + scale.copy = function() { + return d3_scale_threshold(domain, range); + }; + return scale; + } + d3.scale.identity = function() { + return d3_scale_identity([ 0, 1 ]); + }; + function d3_scale_identity(domain) { + function identity(x) { + return +x; + } + identity.invert = identity; + identity.domain = identity.range = function(x) { + if (!arguments.length) return domain; + domain = x.map(identity); + return identity; + }; + identity.ticks = function(m) { + return d3_scale_linearTicks(domain, m); + }; + identity.tickFormat = function(m, format) { + return d3_scale_linearTickFormat(domain, m, format); + }; + identity.copy = function() { + return d3_scale_identity(domain); + }; + return identity; + } + d3.svg = {}; + d3.svg.arc = function() { + var innerRadius = d3_svg_arcInnerRadius, outerRadius = d3_svg_arcOuterRadius, startAngle = d3_svg_arcStartAngle, endAngle = d3_svg_arcEndAngle; + function arc() { + var r0 = innerRadius.apply(this, arguments), r1 = outerRadius.apply(this, arguments), a0 = startAngle.apply(this, arguments) + d3_svg_arcOffset, a1 = endAngle.apply(this, arguments) + d3_svg_arcOffset, da = (a1 < a0 && (da = a0, + a0 = a1, a1 = da), a1 - a0), df = da < π ? "0" : "1", c0 = Math.cos(a0), s0 = Math.sin(a0), c1 = Math.cos(a1), s1 = Math.sin(a1); + return da >= d3_svg_arcMax ? r0 ? "M0," + r1 + "A" + r1 + "," + r1 + " 0 1,1 0," + -r1 + "A" + r1 + "," + r1 + " 0 1,1 0," + r1 + "M0," + r0 + "A" + r0 + "," + r0 + " 0 1,0 0," + -r0 + "A" + r0 + "," + r0 + " 0 1,0 0," + r0 + "Z" : "M0," + r1 + "A" + r1 + "," + r1 + " 0 1,1 0," + -r1 + "A" + r1 + "," + r1 + " 0 1,1 0," + r1 + "Z" : r0 ? "M" + r1 * c0 + "," + r1 * s0 + "A" + r1 + "," + r1 + " 0 " + df + ",1 " + r1 * c1 + "," + r1 * s1 + "L" + r0 * c1 + "," + r0 * s1 + "A" + r0 + "," + r0 + " 0 " + df + ",0 " + r0 * c0 + "," + r0 * s0 + "Z" : "M" + r1 * c0 + "," + r1 * s0 + "A" + r1 + "," + r1 + " 0 " + df + ",1 " + r1 * c1 + "," + r1 * s1 + "L0,0" + "Z"; + } + arc.innerRadius = function(v) { + if (!arguments.length) return innerRadius; + innerRadius = d3_functor(v); + return arc; + }; + arc.outerRadius = function(v) { + if (!arguments.length) return outerRadius; + outerRadius = d3_functor(v); + return arc; + }; + arc.startAngle = function(v) { + if (!arguments.length) return startAngle; + startAngle = d3_functor(v); + return arc; + }; + arc.endAngle = function(v) { + if (!arguments.length) return endAngle; + endAngle = d3_functor(v); + return arc; + }; + arc.centroid = function() { + var r = (innerRadius.apply(this, arguments) + outerRadius.apply(this, arguments)) / 2, a = (startAngle.apply(this, arguments) + endAngle.apply(this, arguments)) / 2 + d3_svg_arcOffset; + return [ Math.cos(a) * r, Math.sin(a) * r ]; + }; + return arc; + }; + var d3_svg_arcOffset = -halfπ, d3_svg_arcMax = τ - ε; + function d3_svg_arcInnerRadius(d) { + return d.innerRadius; + } + function d3_svg_arcOuterRadius(d) { + return d.outerRadius; + } + function d3_svg_arcStartAngle(d) { + return d.startAngle; + } + function d3_svg_arcEndAngle(d) { + return d.endAngle; + } + function d3_svg_line(projection) { + var x = d3_geom_pointX, y = d3_geom_pointY, defined = d3_true, interpolate = d3_svg_lineLinear, interpolateKey = interpolate.key, tension = .7; + function line(data) { + var segments = [], points = [], i = -1, n = data.length, d, fx = d3_functor(x), fy = d3_functor(y); + function segment() { + segments.push("M", interpolate(projection(points), tension)); + } + while (++i < n) { + if (defined.call(this, d = data[i], i)) { + points.push([ +fx.call(this, d, i), +fy.call(this, d, i) ]); + } else if (points.length) { + segment(); + points = []; + } + } + if (points.length) segment(); + return segments.length ? segments.join("") : null; + } + line.x = function(_) { + if (!arguments.length) return x; + x = _; + return line; + }; + line.y = function(_) { + if (!arguments.length) return y; + y = _; + return line; + }; + line.defined = function(_) { + if (!arguments.length) return defined; + defined = _; + return line; + }; + line.interpolate = function(_) { + if (!arguments.length) return interpolateKey; + if (typeof _ === "function") interpolateKey = interpolate = _; else interpolateKey = (interpolate = d3_svg_lineInterpolators.get(_) || d3_svg_lineLinear).key; + return line; + }; + line.tension = function(_) { + if (!arguments.length) return tension; + tension = _; + return line; + }; + return line; + } + d3.svg.line = function() { + return d3_svg_line(d3_identity); + }; + var d3_svg_lineInterpolators = d3.map({ + linear: d3_svg_lineLinear, + "linear-closed": d3_svg_lineLinearClosed, + step: d3_svg_lineStep, + "step-before": d3_svg_lineStepBefore, + "step-after": d3_svg_lineStepAfter, + basis: d3_svg_lineBasis, + "basis-open": d3_svg_lineBasisOpen, + "basis-closed": d3_svg_lineBasisClosed, + bundle: d3_svg_lineBundle, + cardinal: d3_svg_lineCardinal, + "cardinal-open": d3_svg_lineCardinalOpen, + "cardinal-closed": d3_svg_lineCardinalClosed, + monotone: d3_svg_lineMonotone + }); + d3_svg_lineInterpolators.forEach(function(key, value) { + value.key = key; + value.closed = /-closed$/.test(key); + }); + function d3_svg_lineLinear(points) { + return points.join("L"); + } + function d3_svg_lineLinearClosed(points) { + return d3_svg_lineLinear(points) + "Z"; + } + function d3_svg_lineStep(points) { + var i = 0, n = points.length, p = points[0], path = [ p[0], ",", p[1] ]; + while (++i < n) path.push("H", (p[0] + (p = points[i])[0]) / 2, "V", p[1]); + if (n > 1) path.push("H", p[0]); + return path.join(""); + } + function d3_svg_lineStepBefore(points) { + var i = 0, n = points.length, p = points[0], path = [ p[0], ",", p[1] ]; + while (++i < n) path.push("V", (p = points[i])[1], "H", p[0]); + return path.join(""); + } + function d3_svg_lineStepAfter(points) { + var i = 0, n = points.length, p = points[0], path = [ p[0], ",", p[1] ]; + while (++i < n) path.push("H", (p = points[i])[0], "V", p[1]); + return path.join(""); + } + function d3_svg_lineCardinalOpen(points, tension) { + return points.length < 4 ? d3_svg_lineLinear(points) : points[1] + d3_svg_lineHermite(points.slice(1, points.length - 1), d3_svg_lineCardinalTangents(points, tension)); + } + function d3_svg_lineCardinalClosed(points, tension) { + return points.length < 3 ? d3_svg_lineLinear(points) : points[0] + d3_svg_lineHermite((points.push(points[0]), + points), d3_svg_lineCardinalTangents([ points[points.length - 2] ].concat(points, [ points[1] ]), tension)); + } + function d3_svg_lineCardinal(points, tension) { + return points.length < 3 ? d3_svg_lineLinear(points) : points[0] + d3_svg_lineHermite(points, d3_svg_lineCardinalTangents(points, tension)); + } + function d3_svg_lineHermite(points, tangents) { + if (tangents.length < 1 || points.length != tangents.length && points.length != tangents.length + 2) { + return d3_svg_lineLinear(points); + } + var quad = points.length != tangents.length, path = "", p0 = points[0], p = points[1], t0 = tangents[0], t = t0, pi = 1; + if (quad) { + path += "Q" + (p[0] - t0[0] * 2 / 3) + "," + (p[1] - t0[1] * 2 / 3) + "," + p[0] + "," + p[1]; + p0 = points[1]; + pi = 2; + } + if (tangents.length > 1) { + t = tangents[1]; + p = points[pi]; + pi++; + path += "C" + (p0[0] + t0[0]) + "," + (p0[1] + t0[1]) + "," + (p[0] - t[0]) + "," + (p[1] - t[1]) + "," + p[0] + "," + p[1]; + for (var i = 2; i < tangents.length; i++, pi++) { + p = points[pi]; + t = tangents[i]; + path += "S" + (p[0] - t[0]) + "," + (p[1] - t[1]) + "," + p[0] + "," + p[1]; + } + } + if (quad) { + var lp = points[pi]; + path += "Q" + (p[0] + t[0] * 2 / 3) + "," + (p[1] + t[1] * 2 / 3) + "," + lp[0] + "," + lp[1]; + } + return path; + } + function d3_svg_lineCardinalTangents(points, tension) { + var tangents = [], a = (1 - tension) / 2, p0, p1 = points[0], p2 = points[1], i = 1, n = points.length; + while (++i < n) { + p0 = p1; + p1 = p2; + p2 = points[i]; + tangents.push([ a * (p2[0] - p0[0]), a * (p2[1] - p0[1]) ]); + } + return tangents; + } + function d3_svg_lineBasis(points) { + if (points.length < 3) return d3_svg_lineLinear(points); + var i = 1, n = points.length, pi = points[0], x0 = pi[0], y0 = pi[1], px = [ x0, x0, x0, (pi = points[1])[0] ], py = [ y0, y0, y0, pi[1] ], path = [ x0, ",", y0, "L", d3_svg_lineDot4(d3_svg_lineBasisBezier3, px), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, py) ]; + points.push(points[n - 1]); + while (++i <= n) { + pi = points[i]; + px.shift(); + px.push(pi[0]); + py.shift(); + py.push(pi[1]); + d3_svg_lineBasisBezier(path, px, py); + } + points.pop(); + path.push("L", pi); + return path.join(""); + } + function d3_svg_lineBasisOpen(points) { + if (points.length < 4) return d3_svg_lineLinear(points); + var path = [], i = -1, n = points.length, pi, px = [ 0 ], py = [ 0 ]; + while (++i < 3) { + pi = points[i]; + px.push(pi[0]); + py.push(pi[1]); + } + path.push(d3_svg_lineDot4(d3_svg_lineBasisBezier3, px) + "," + d3_svg_lineDot4(d3_svg_lineBasisBezier3, py)); + --i; + while (++i < n) { + pi = points[i]; + px.shift(); + px.push(pi[0]); + py.shift(); + py.push(pi[1]); + d3_svg_lineBasisBezier(path, px, py); + } + return path.join(""); + } + function d3_svg_lineBasisClosed(points) { + var path, i = -1, n = points.length, m = n + 4, pi, px = [], py = []; + while (++i < 4) { + pi = points[i % n]; + px.push(pi[0]); + py.push(pi[1]); + } + path = [ d3_svg_lineDot4(d3_svg_lineBasisBezier3, px), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, py) ]; + --i; + while (++i < m) { + pi = points[i % n]; + px.shift(); + px.push(pi[0]); + py.shift(); + py.push(pi[1]); + d3_svg_lineBasisBezier(path, px, py); + } + return path.join(""); + } + function d3_svg_lineBundle(points, tension) { + var n = points.length - 1; + if (n) { + var x0 = points[0][0], y0 = points[0][1], dx = points[n][0] - x0, dy = points[n][1] - y0, i = -1, p, t; + while (++i <= n) { + p = points[i]; + t = i / n; + p[0] = tension * p[0] + (1 - tension) * (x0 + t * dx); + p[1] = tension * p[1] + (1 - tension) * (y0 + t * dy); + } + } + return d3_svg_lineBasis(points); + } + function d3_svg_lineDot4(a, b) { + return a[0] * b[0] + a[1] * b[1] + a[2] * b[2] + a[3] * b[3]; + } + var d3_svg_lineBasisBezier1 = [ 0, 2 / 3, 1 / 3, 0 ], d3_svg_lineBasisBezier2 = [ 0, 1 / 3, 2 / 3, 0 ], d3_svg_lineBasisBezier3 = [ 0, 1 / 6, 2 / 3, 1 / 6 ]; + function d3_svg_lineBasisBezier(path, x, y) { + path.push("C", d3_svg_lineDot4(d3_svg_lineBasisBezier1, x), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier1, y), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier2, x), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier2, y), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, x), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, y)); + } + function d3_svg_lineSlope(p0, p1) { + return (p1[1] - p0[1]) / (p1[0] - p0[0]); + } + function d3_svg_lineFiniteDifferences(points) { + var i = 0, j = points.length - 1, m = [], p0 = points[0], p1 = points[1], d = m[0] = d3_svg_lineSlope(p0, p1); + while (++i < j) { + m[i] = (d + (d = d3_svg_lineSlope(p0 = p1, p1 = points[i + 1]))) / 2; + } + m[i] = d; + return m; + } + function d3_svg_lineMonotoneTangents(points) { + var tangents = [], d, a, b, s, m = d3_svg_lineFiniteDifferences(points), i = -1, j = points.length - 1; + while (++i < j) { + d = d3_svg_lineSlope(points[i], points[i + 1]); + if (abs(d) < ε) { + m[i] = m[i + 1] = 0; + } else { + a = m[i] / d; + b = m[i + 1] / d; + s = a * a + b * b; + if (s > 9) { + s = d * 3 / Math.sqrt(s); + m[i] = s * a; + m[i + 1] = s * b; + } + } + } + i = -1; + while (++i <= j) { + s = (points[Math.min(j, i + 1)][0] - points[Math.max(0, i - 1)][0]) / (6 * (1 + m[i] * m[i])); + tangents.push([ s || 0, m[i] * s || 0 ]); + } + return tangents; + } + function d3_svg_lineMonotone(points) { + return points.length < 3 ? d3_svg_lineLinear(points) : points[0] + d3_svg_lineHermite(points, d3_svg_lineMonotoneTangents(points)); + } + d3.svg.line.radial = function() { + var line = d3_svg_line(d3_svg_lineRadial); + line.radius = line.x, delete line.x; + line.angle = line.y, delete line.y; + return line; + }; + function d3_svg_lineRadial(points) { + var point, i = -1, n = points.length, r, a; + while (++i < n) { + point = points[i]; + r = point[0]; + a = point[1] + d3_svg_arcOffset; + point[0] = r * Math.cos(a); + point[1] = r * Math.sin(a); + } + return points; + } + function d3_svg_area(projection) { + var x0 = d3_geom_pointX, x1 = d3_geom_pointX, y0 = 0, y1 = d3_geom_pointY, defined = d3_true, interpolate = d3_svg_lineLinear, interpolateKey = interpolate.key, interpolateReverse = interpolate, L = "L", tension = .7; + function area(data) { + var segments = [], points0 = [], points1 = [], i = -1, n = data.length, d, fx0 = d3_functor(x0), fy0 = d3_functor(y0), fx1 = x0 === x1 ? function() { + return x; + } : d3_functor(x1), fy1 = y0 === y1 ? function() { + return y; + } : d3_functor(y1), x, y; + function segment() { + segments.push("M", interpolate(projection(points1), tension), L, interpolateReverse(projection(points0.reverse()), tension), "Z"); + } + while (++i < n) { + if (defined.call(this, d = data[i], i)) { + points0.push([ x = +fx0.call(this, d, i), y = +fy0.call(this, d, i) ]); + points1.push([ +fx1.call(this, d, i), +fy1.call(this, d, i) ]); + } else if (points0.length) { + segment(); + points0 = []; + points1 = []; + } + } + if (points0.length) segment(); + return segments.length ? segments.join("") : null; + } + area.x = function(_) { + if (!arguments.length) return x1; + x0 = x1 = _; + return area; + }; + area.x0 = function(_) { + if (!arguments.length) return x0; + x0 = _; + return area; + }; + area.x1 = function(_) { + if (!arguments.length) return x1; + x1 = _; + return area; + }; + area.y = function(_) { + if (!arguments.length) return y1; + y0 = y1 = _; + return area; + }; + area.y0 = function(_) { + if (!arguments.length) return y0; + y0 = _; + return area; + }; + area.y1 = function(_) { + if (!arguments.length) return y1; + y1 = _; + return area; + }; + area.defined = function(_) { + if (!arguments.length) return defined; + defined = _; + return area; + }; + area.interpolate = function(_) { + if (!arguments.length) return interpolateKey; + if (typeof _ === "function") interpolateKey = interpolate = _; else interpolateKey = (interpolate = d3_svg_lineInterpolators.get(_) || d3_svg_lineLinear).key; + interpolateReverse = interpolate.reverse || interpolate; + L = interpolate.closed ? "M" : "L"; + return area; + }; + area.tension = function(_) { + if (!arguments.length) return tension; + tension = _; + return area; + }; + return area; + } + d3_svg_lineStepBefore.reverse = d3_svg_lineStepAfter; + d3_svg_lineStepAfter.reverse = d3_svg_lineStepBefore; + d3.svg.area = function() { + return d3_svg_area(d3_identity); + }; + d3.svg.area.radial = function() { + var area = d3_svg_area(d3_svg_lineRadial); + area.radius = area.x, delete area.x; + area.innerRadius = area.x0, delete area.x0; + area.outerRadius = area.x1, delete area.x1; + area.angle = area.y, delete area.y; + area.startAngle = area.y0, delete area.y0; + area.endAngle = area.y1, delete area.y1; + return area; + }; + d3.svg.chord = function() { + var source = d3_source, target = d3_target, radius = d3_svg_chordRadius, startAngle = d3_svg_arcStartAngle, endAngle = d3_svg_arcEndAngle; + function chord(d, i) { + var s = subgroup(this, source, d, i), t = subgroup(this, target, d, i); + return "M" + s.p0 + arc(s.r, s.p1, s.a1 - s.a0) + (equals(s, t) ? curve(s.r, s.p1, s.r, s.p0) : curve(s.r, s.p1, t.r, t.p0) + arc(t.r, t.p1, t.a1 - t.a0) + curve(t.r, t.p1, s.r, s.p0)) + "Z"; + } + function subgroup(self, f, d, i) { + var subgroup = f.call(self, d, i), r = radius.call(self, subgroup, i), a0 = startAngle.call(self, subgroup, i) + d3_svg_arcOffset, a1 = endAngle.call(self, subgroup, i) + d3_svg_arcOffset; + return { + r: r, + a0: a0, + a1: a1, + p0: [ r * Math.cos(a0), r * Math.sin(a0) ], + p1: [ r * Math.cos(a1), r * Math.sin(a1) ] + }; + } + function equals(a, b) { + return a.a0 == b.a0 && a.a1 == b.a1; + } + function arc(r, p, a) { + return "A" + r + "," + r + " 0 " + +(a > π) + ",1 " + p; + } + function curve(r0, p0, r1, p1) { + return "Q 0,0 " + p1; + } + chord.radius = function(v) { + if (!arguments.length) return radius; + radius = d3_functor(v); + return chord; + }; + chord.source = function(v) { + if (!arguments.length) return source; + source = d3_functor(v); + return chord; + }; + chord.target = function(v) { + if (!arguments.length) return target; + target = d3_functor(v); + return chord; + }; + chord.startAngle = function(v) { + if (!arguments.length) return startAngle; + startAngle = d3_functor(v); + return chord; + }; + chord.endAngle = function(v) { + if (!arguments.length) return endAngle; + endAngle = d3_functor(v); + return chord; + }; + return chord; + }; + function d3_svg_chordRadius(d) { + return d.radius; + } + d3.svg.diagonal = function() { + var source = d3_source, target = d3_target, projection = d3_svg_diagonalProjection; + function diagonal(d, i) { + var p0 = source.call(this, d, i), p3 = target.call(this, d, i), m = (p0.y + p3.y) / 2, p = [ p0, { + x: p0.x, + y: m + }, { + x: p3.x, + y: m + }, p3 ]; + p = p.map(projection); + return "M" + p[0] + "C" + p[1] + " " + p[2] + " " + p[3]; + } + diagonal.source = function(x) { + if (!arguments.length) return source; + source = d3_functor(x); + return diagonal; + }; + diagonal.target = function(x) { + if (!arguments.length) return target; + target = d3_functor(x); + return diagonal; + }; + diagonal.projection = function(x) { + if (!arguments.length) return projection; + projection = x; + return diagonal; + }; + return diagonal; + }; + function d3_svg_diagonalProjection(d) { + return [ d.x, d.y ]; + } + d3.svg.diagonal.radial = function() { + var diagonal = d3.svg.diagonal(), projection = d3_svg_diagonalProjection, projection_ = diagonal.projection; + diagonal.projection = function(x) { + return arguments.length ? projection_(d3_svg_diagonalRadialProjection(projection = x)) : projection; + }; + return diagonal; + }; + function d3_svg_diagonalRadialProjection(projection) { + return function() { + var d = projection.apply(this, arguments), r = d[0], a = d[1] + d3_svg_arcOffset; + return [ r * Math.cos(a), r * Math.sin(a) ]; + }; + } + d3.svg.symbol = function() { + var type = d3_svg_symbolType, size = d3_svg_symbolSize; + function symbol(d, i) { + return (d3_svg_symbols.get(type.call(this, d, i)) || d3_svg_symbolCircle)(size.call(this, d, i)); + } + symbol.type = function(x) { + if (!arguments.length) return type; + type = d3_functor(x); + return symbol; + }; + symbol.size = function(x) { + if (!arguments.length) return size; + size = d3_functor(x); + return symbol; + }; + return symbol; + }; + function d3_svg_symbolSize() { + return 64; + } + function d3_svg_symbolType() { + return "circle"; + } + function d3_svg_symbolCircle(size) { + var r = Math.sqrt(size / π); + return "M0," + r + "A" + r + "," + r + " 0 1,1 0," + -r + "A" + r + "," + r + " 0 1,1 0," + r + "Z"; + } + var d3_svg_symbols = d3.map({ + circle: d3_svg_symbolCircle, + cross: function(size) { + var r = Math.sqrt(size / 5) / 2; + return "M" + -3 * r + "," + -r + "H" + -r + "V" + -3 * r + "H" + r + "V" + -r + "H" + 3 * r + "V" + r + "H" + r + "V" + 3 * r + "H" + -r + "V" + r + "H" + -3 * r + "Z"; + }, + diamond: function(size) { + var ry = Math.sqrt(size / (2 * d3_svg_symbolTan30)), rx = ry * d3_svg_symbolTan30; + return "M0," + -ry + "L" + rx + ",0" + " 0," + ry + " " + -rx + ",0" + "Z"; + }, + square: function(size) { + var r = Math.sqrt(size) / 2; + return "M" + -r + "," + -r + "L" + r + "," + -r + " " + r + "," + r + " " + -r + "," + r + "Z"; + }, + "triangle-down": function(size) { + var rx = Math.sqrt(size / d3_svg_symbolSqrt3), ry = rx * d3_svg_symbolSqrt3 / 2; + return "M0," + ry + "L" + rx + "," + -ry + " " + -rx + "," + -ry + "Z"; + }, + "triangle-up": function(size) { + var rx = Math.sqrt(size / d3_svg_symbolSqrt3), ry = rx * d3_svg_symbolSqrt3 / 2; + return "M0," + -ry + "L" + rx + "," + ry + " " + -rx + "," + ry + "Z"; + } + }); + d3.svg.symbolTypes = d3_svg_symbols.keys(); + var d3_svg_symbolSqrt3 = Math.sqrt(3), d3_svg_symbolTan30 = Math.tan(30 * d3_radians); + function d3_transition(groups, id) { + d3_subclass(groups, d3_transitionPrototype); + groups.id = id; + return groups; + } + var d3_transitionPrototype = [], d3_transitionId = 0, d3_transitionInheritId, d3_transitionInherit; + d3_transitionPrototype.call = d3_selectionPrototype.call; + d3_transitionPrototype.empty = d3_selectionPrototype.empty; + d3_transitionPrototype.node = d3_selectionPrototype.node; + d3_transitionPrototype.size = d3_selectionPrototype.size; + d3.transition = function(selection) { + return arguments.length ? d3_transitionInheritId ? selection.transition() : selection : d3_selectionRoot.transition(); + }; + d3.transition.prototype = d3_transitionPrototype; + d3_transitionPrototype.select = function(selector) { + var id = this.id, subgroups = [], subgroup, subnode, node; + selector = d3_selection_selector(selector); + for (var j = -1, m = this.length; ++j < m; ) { + subgroups.push(subgroup = []); + for (var group = this[j], i = -1, n = group.length; ++i < n; ) { + if ((node = group[i]) && (subnode = selector.call(node, node.__data__, i, j))) { + if ("__data__" in node) subnode.__data__ = node.__data__; + d3_transitionNode(subnode, i, id, node.__transition__[id]); + subgroup.push(subnode); + } else { + subgroup.push(null); + } + } + } + return d3_transition(subgroups, id); + }; + d3_transitionPrototype.selectAll = function(selector) { + var id = this.id, subgroups = [], subgroup, subnodes, node, subnode, transition; + selector = d3_selection_selectorAll(selector); + for (var j = -1, m = this.length; ++j < m; ) { + for (var group = this[j], i = -1, n = group.length; ++i < n; ) { + if (node = group[i]) { + transition = node.__transition__[id]; + subnodes = selector.call(node, node.__data__, i, j); + subgroups.push(subgroup = []); + for (var k = -1, o = subnodes.length; ++k < o; ) { + if (subnode = subnodes[k]) d3_transitionNode(subnode, k, id, transition); + subgroup.push(subnode); + } + } + } + } + return d3_transition(subgroups, id); + }; + d3_transitionPrototype.filter = function(filter) { + var subgroups = [], subgroup, group, node; + if (typeof filter !== "function") filter = d3_selection_filter(filter); + for (var j = 0, m = this.length; j < m; j++) { + subgroups.push(subgroup = []); + for (var group = this[j], i = 0, n = group.length; i < n; i++) { + if ((node = group[i]) && filter.call(node, node.__data__, i, j)) { + subgroup.push(node); + } + } + } + return d3_transition(subgroups, this.id); + }; + d3_transitionPrototype.tween = function(name, tween) { + var id = this.id; + if (arguments.length < 2) return this.node().__transition__[id].tween.get(name); + return d3_selection_each(this, tween == null ? function(node) { + node.__transition__[id].tween.remove(name); + } : function(node) { + node.__transition__[id].tween.set(name, tween); + }); + }; + function d3_transition_tween(groups, name, value, tween) { + var id = groups.id; + return d3_selection_each(groups, typeof value === "function" ? function(node, i, j) { + node.__transition__[id].tween.set(name, tween(value.call(node, node.__data__, i, j))); + } : (value = tween(value), function(node) { + node.__transition__[id].tween.set(name, value); + })); + } + d3_transitionPrototype.attr = function(nameNS, value) { + if (arguments.length < 2) { + for (value in nameNS) this.attr(value, nameNS[value]); + return this; + } + var interpolate = nameNS == "transform" ? d3_interpolateTransform : d3_interpolate, name = d3.ns.qualify(nameNS); + function attrNull() { + this.removeAttribute(name); + } + function attrNullNS() { + this.removeAttributeNS(name.space, name.local); + } + function attrTween(b) { + return b == null ? attrNull : (b += "", function() { + var a = this.getAttribute(name), i; + return a !== b && (i = interpolate(a, b), function(t) { + this.setAttribute(name, i(t)); + }); + }); + } + function attrTweenNS(b) { + return b == null ? attrNullNS : (b += "", function() { + var a = this.getAttributeNS(name.space, name.local), i; + return a !== b && (i = interpolate(a, b), function(t) { + this.setAttributeNS(name.space, name.local, i(t)); + }); + }); + } + return d3_transition_tween(this, "attr." + nameNS, value, name.local ? attrTweenNS : attrTween); + }; + d3_transitionPrototype.attrTween = function(nameNS, tween) { + var name = d3.ns.qualify(nameNS); + function attrTween(d, i) { + var f = tween.call(this, d, i, this.getAttribute(name)); + return f && function(t) { + this.setAttribute(name, f(t)); + }; + } + function attrTweenNS(d, i) { + var f = tween.call(this, d, i, this.getAttributeNS(name.space, name.local)); + return f && function(t) { + this.setAttributeNS(name.space, name.local, f(t)); + }; + } + return this.tween("attr." + nameNS, name.local ? attrTweenNS : attrTween); + }; + d3_transitionPrototype.style = function(name, value, priority) { + var n = arguments.length; + if (n < 3) { + if (typeof name !== "string") { + if (n < 2) value = ""; + for (priority in name) this.style(priority, name[priority], value); + return this; + } + priority = ""; + } + function styleNull() { + this.style.removeProperty(name); + } + function styleString(b) { + return b == null ? styleNull : (b += "", function() { + var a = d3_window.getComputedStyle(this, null).getPropertyValue(name), i; + return a !== b && (i = d3_interpolate(a, b), function(t) { + this.style.setProperty(name, i(t), priority); + }); + }); + } + return d3_transition_tween(this, "style." + name, value, styleString); + }; + d3_transitionPrototype.styleTween = function(name, tween, priority) { + if (arguments.length < 3) priority = ""; + function styleTween(d, i) { + var f = tween.call(this, d, i, d3_window.getComputedStyle(this, null).getPropertyValue(name)); + return f && function(t) { + this.style.setProperty(name, f(t), priority); + }; + } + return this.tween("style." + name, styleTween); + }; + d3_transitionPrototype.text = function(value) { + return d3_transition_tween(this, "text", value, d3_transition_text); + }; + function d3_transition_text(b) { + if (b == null) b = ""; + return function() { + this.textContent = b; + }; + } + d3_transitionPrototype.remove = function() { + return this.each("end.transition", function() { + var p; + if (this.__transition__.count < 2 && (p = this.parentNode)) p.removeChild(this); + }); + }; + d3_transitionPrototype.ease = function(value) { + var id = this.id; + if (arguments.length < 1) return this.node().__transition__[id].ease; + if (typeof value !== "function") value = d3.ease.apply(d3, arguments); + return d3_selection_each(this, function(node) { + node.__transition__[id].ease = value; + }); + }; + d3_transitionPrototype.delay = function(value) { + var id = this.id; + if (arguments.length < 1) return this.node().__transition__[id].delay; + return d3_selection_each(this, typeof value === "function" ? function(node, i, j) { + node.__transition__[id].delay = +value.call(node, node.__data__, i, j); + } : (value = +value, function(node) { + node.__transition__[id].delay = value; + })); + }; + d3_transitionPrototype.duration = function(value) { + var id = this.id; + if (arguments.length < 1) return this.node().__transition__[id].duration; + return d3_selection_each(this, typeof value === "function" ? function(node, i, j) { + node.__transition__[id].duration = Math.max(1, value.call(node, node.__data__, i, j)); + } : (value = Math.max(1, value), function(node) { + node.__transition__[id].duration = value; + })); + }; + d3_transitionPrototype.each = function(type, listener) { + var id = this.id; + if (arguments.length < 2) { + var inherit = d3_transitionInherit, inheritId = d3_transitionInheritId; + d3_transitionInheritId = id; + d3_selection_each(this, function(node, i, j) { + d3_transitionInherit = node.__transition__[id]; + type.call(node, node.__data__, i, j); + }); + d3_transitionInherit = inherit; + d3_transitionInheritId = inheritId; + } else { + d3_selection_each(this, function(node) { + var transition = node.__transition__[id]; + (transition.event || (transition.event = d3.dispatch("start", "end"))).on(type, listener); + }); + } + return this; + }; + d3_transitionPrototype.transition = function() { + var id0 = this.id, id1 = ++d3_transitionId, subgroups = [], subgroup, group, node, transition; + for (var j = 0, m = this.length; j < m; j++) { + subgroups.push(subgroup = []); + for (var group = this[j], i = 0, n = group.length; i < n; i++) { + if (node = group[i]) { + transition = Object.create(node.__transition__[id0]); + transition.delay += transition.duration; + d3_transitionNode(node, i, id1, transition); + } + subgroup.push(node); + } + } + return d3_transition(subgroups, id1); + }; + function d3_transitionNode(node, i, id, inherit) { + var lock = node.__transition__ || (node.__transition__ = { + active: 0, + count: 0 + }), transition = lock[id]; + if (!transition) { + var time = inherit.time; + transition = lock[id] = { + tween: new d3_Map(), + time: time, + ease: inherit.ease, + delay: inherit.delay, + duration: inherit.duration + }; + ++lock.count; + d3.timer(function(elapsed) { + var d = node.__data__, ease = transition.ease, delay = transition.delay, duration = transition.duration, timer = d3_timer_active, tweened = []; + timer.t = delay + time; + if (delay <= elapsed) return start(elapsed - delay); + timer.c = start; + function start(elapsed) { + if (lock.active > id) return stop(); + lock.active = id; + transition.event && transition.event.start.call(node, d, i); + transition.tween.forEach(function(key, value) { + if (value = value.call(node, d, i)) { + tweened.push(value); + } + }); + d3.timer(function() { + timer.c = tick(elapsed || 1) ? d3_true : tick; + return 1; + }, 0, time); + } + function tick(elapsed) { + if (lock.active !== id) return stop(); + var t = elapsed / duration, e = ease(t), n = tweened.length; + while (n > 0) { + tweened[--n].call(node, e); + } + if (t >= 1) { + transition.event && transition.event.end.call(node, d, i); + return stop(); + } + } + function stop() { + if (--lock.count) delete lock[id]; else delete node.__transition__; + return 1; + } + }, 0, time); + } + } + d3.svg.axis = function() { + var scale = d3.scale.linear(), orient = d3_svg_axisDefaultOrient, innerTickSize = 6, outerTickSize = 6, tickPadding = 3, tickArguments_ = [ 10 ], tickValues = null, tickFormat_; + function axis(g) { + g.each(function() { + var g = d3.select(this); + var scale0 = this.__chart__ || scale, scale1 = this.__chart__ = scale.copy(); + var ticks = tickValues == null ? scale1.ticks ? scale1.ticks.apply(scale1, tickArguments_) : scale1.domain() : tickValues, tickFormat = tickFormat_ == null ? scale1.tickFormat ? scale1.tickFormat.apply(scale1, tickArguments_) : d3_identity : tickFormat_, tick = g.selectAll(".tick").data(ticks, scale1), tickEnter = tick.enter().insert("g", ".domain").attr("class", "tick").style("opacity", ε), tickExit = d3.transition(tick.exit()).style("opacity", ε).remove(), tickUpdate = d3.transition(tick.order()).style("opacity", 1), tickTransform; + var range = d3_scaleRange(scale1), path = g.selectAll(".domain").data([ 0 ]), pathUpdate = (path.enter().append("path").attr("class", "domain"), + d3.transition(path)); + tickEnter.append("line"); + tickEnter.append("text"); + var lineEnter = tickEnter.select("line"), lineUpdate = tickUpdate.select("line"), text = tick.select("text").text(tickFormat), textEnter = tickEnter.select("text"), textUpdate = tickUpdate.select("text"); + switch (orient) { + case "bottom": + { + tickTransform = d3_svg_axisX; + lineEnter.attr("y2", innerTickSize); + textEnter.attr("y", Math.max(innerTickSize, 0) + tickPadding); + lineUpdate.attr("x2", 0).attr("y2", innerTickSize); + textUpdate.attr("x", 0).attr("y", Math.max(innerTickSize, 0) + tickPadding); + text.attr("dy", ".71em").style("text-anchor", "middle"); + pathUpdate.attr("d", "M" + range[0] + "," + outerTickSize + "V0H" + range[1] + "V" + outerTickSize); + break; + } + + case "top": + { + tickTransform = d3_svg_axisX; + lineEnter.attr("y2", -innerTickSize); + textEnter.attr("y", -(Math.max(innerTickSize, 0) + tickPadding)); + lineUpdate.attr("x2", 0).attr("y2", -innerTickSize); + textUpdate.attr("x", 0).attr("y", -(Math.max(innerTickSize, 0) + tickPadding)); + text.attr("dy", "0em").style("text-anchor", "middle"); + pathUpdate.attr("d", "M" + range[0] + "," + -outerTickSize + "V0H" + range[1] + "V" + -outerTickSize); + break; + } + + case "left": + { + tickTransform = d3_svg_axisY; + lineEnter.attr("x2", -innerTickSize); + textEnter.attr("x", -(Math.max(innerTickSize, 0) + tickPadding)); + lineUpdate.attr("x2", -innerTickSize).attr("y2", 0); + textUpdate.attr("x", -(Math.max(innerTickSize, 0) + tickPadding)).attr("y", 0); + text.attr("dy", ".32em").style("text-anchor", "end"); + pathUpdate.attr("d", "M" + -outerTickSize + "," + range[0] + "H0V" + range[1] + "H" + -outerTickSize); + break; + } + + case "right": + { + tickTransform = d3_svg_axisY; + lineEnter.attr("x2", innerTickSize); + textEnter.attr("x", Math.max(innerTickSize, 0) + tickPadding); + lineUpdate.attr("x2", innerTickSize).attr("y2", 0); + textUpdate.attr("x", Math.max(innerTickSize, 0) + tickPadding).attr("y", 0); + text.attr("dy", ".32em").style("text-anchor", "start"); + pathUpdate.attr("d", "M" + outerTickSize + "," + range[0] + "H0V" + range[1] + "H" + outerTickSize); + break; + } + } + if (scale1.rangeBand) { + var x = scale1, dx = x.rangeBand() / 2; + scale0 = scale1 = function(d) { + return x(d) + dx; + }; + } else if (scale0.rangeBand) { + scale0 = scale1; + } else { + tickExit.call(tickTransform, scale1); + } + tickEnter.call(tickTransform, scale0); + tickUpdate.call(tickTransform, scale1); + }); + } + axis.scale = function(x) { + if (!arguments.length) return scale; + scale = x; + return axis; + }; + axis.orient = function(x) { + if (!arguments.length) return orient; + orient = x in d3_svg_axisOrients ? x + "" : d3_svg_axisDefaultOrient; + return axis; + }; + axis.ticks = function() { + if (!arguments.length) return tickArguments_; + tickArguments_ = arguments; + return axis; + }; + axis.tickValues = function(x) { + if (!arguments.length) return tickValues; + tickValues = x; + return axis; + }; + axis.tickFormat = function(x) { + if (!arguments.length) return tickFormat_; + tickFormat_ = x; + return axis; + }; + axis.tickSize = function(x) { + var n = arguments.length; + if (!n) return innerTickSize; + innerTickSize = +x; + outerTickSize = +arguments[n - 1]; + return axis; + }; + axis.innerTickSize = function(x) { + if (!arguments.length) return innerTickSize; + innerTickSize = +x; + return axis; + }; + axis.outerTickSize = function(x) { + if (!arguments.length) return outerTickSize; + outerTickSize = +x; + return axis; + }; + axis.tickPadding = function(x) { + if (!arguments.length) return tickPadding; + tickPadding = +x; + return axis; + }; + axis.tickSubdivide = function() { + return arguments.length && axis; + }; + return axis; + }; + var d3_svg_axisDefaultOrient = "bottom", d3_svg_axisOrients = { + top: 1, + right: 1, + bottom: 1, + left: 1 + }; + function d3_svg_axisX(selection, x) { + selection.attr("transform", function(d) { + return "translate(" + x(d) + ",0)"; + }); + } + function d3_svg_axisY(selection, y) { + selection.attr("transform", function(d) { + return "translate(0," + y(d) + ")"; + }); + } + d3.svg.brush = function() { + var event = d3_eventDispatch(brush, "brushstart", "brush", "brushend"), x = null, y = null, xExtent = [ 0, 0 ], yExtent = [ 0, 0 ], xExtentDomain, yExtentDomain, xClamp = true, yClamp = true, resizes = d3_svg_brushResizes[0]; + function brush(g) { + g.each(function() { + var g = d3.select(this).style("pointer-events", "all").style("-webkit-tap-highlight-color", "rgba(0,0,0,0)").on("mousedown.brush", brushstart).on("touchstart.brush", brushstart); + var background = g.selectAll(".background").data([ 0 ]); + background.enter().append("rect").attr("class", "background").style("visibility", "hidden").style("cursor", "crosshair"); + g.selectAll(".extent").data([ 0 ]).enter().append("rect").attr("class", "extent").style("cursor", "move"); + var resize = g.selectAll(".resize").data(resizes, d3_identity); + resize.exit().remove(); + resize.enter().append("g").attr("class", function(d) { + return "resize " + d; + }).style("cursor", function(d) { + return d3_svg_brushCursor[d]; + }).append("rect").attr("x", function(d) { + return /[ew]$/.test(d) ? -3 : null; + }).attr("y", function(d) { + return /^[ns]/.test(d) ? -3 : null; + }).attr("width", 6).attr("height", 6).style("visibility", "hidden"); + resize.style("display", brush.empty() ? "none" : null); + var gUpdate = d3.transition(g), backgroundUpdate = d3.transition(background), range; + if (x) { + range = d3_scaleRange(x); + backgroundUpdate.attr("x", range[0]).attr("width", range[1] - range[0]); + redrawX(gUpdate); + } + if (y) { + range = d3_scaleRange(y); + backgroundUpdate.attr("y", range[0]).attr("height", range[1] - range[0]); + redrawY(gUpdate); + } + redraw(gUpdate); + }); + } + brush.event = function(g) { + g.each(function() { + var event_ = event.of(this, arguments), extent1 = { + x: xExtent, + y: yExtent, + i: xExtentDomain, + j: yExtentDomain + }, extent0 = this.__chart__ || extent1; + this.__chart__ = extent1; + if (d3_transitionInheritId) { + d3.select(this).transition().each("start.brush", function() { + xExtentDomain = extent0.i; + yExtentDomain = extent0.j; + xExtent = extent0.x; + yExtent = extent0.y; + event_({ + type: "brushstart" + }); + }).tween("brush:brush", function() { + var xi = d3_interpolateArray(xExtent, extent1.x), yi = d3_interpolateArray(yExtent, extent1.y); + xExtentDomain = yExtentDomain = null; + return function(t) { + xExtent = extent1.x = xi(t); + yExtent = extent1.y = yi(t); + event_({ + type: "brush", + mode: "resize" + }); + }; + }).each("end.brush", function() { + xExtentDomain = extent1.i; + yExtentDomain = extent1.j; + event_({ + type: "brush", + mode: "resize" + }); + event_({ + type: "brushend" + }); + }); + } else { + event_({ + type: "brushstart" + }); + event_({ + type: "brush", + mode: "resize" + }); + event_({ + type: "brushend" + }); + } + }); + }; + function redraw(g) { + g.selectAll(".resize").attr("transform", function(d) { + return "translate(" + xExtent[+/e$/.test(d)] + "," + yExtent[+/^s/.test(d)] + ")"; + }); + } + function redrawX(g) { + g.select(".extent").attr("x", xExtent[0]); + g.selectAll(".extent,.n>rect,.s>rect").attr("width", xExtent[1] - xExtent[0]); + } + function redrawY(g) { + g.select(".extent").attr("y", yExtent[0]); + g.selectAll(".extent,.e>rect,.w>rect").attr("height", yExtent[1] - yExtent[0]); + } + function brushstart() { + var target = this, eventTarget = d3.select(d3.event.target), event_ = event.of(target, arguments), g = d3.select(target), resizing = eventTarget.datum(), resizingX = !/^(n|s)$/.test(resizing) && x, resizingY = !/^(e|w)$/.test(resizing) && y, dragging = eventTarget.classed("extent"), dragRestore = d3_event_dragSuppress(), center, origin = d3.mouse(target), offset; + var w = d3.select(d3_window).on("keydown.brush", keydown).on("keyup.brush", keyup); + if (d3.event.changedTouches) { + w.on("touchmove.brush", brushmove).on("touchend.brush", brushend); + } else { + w.on("mousemove.brush", brushmove).on("mouseup.brush", brushend); + } + g.interrupt().selectAll("*").interrupt(); + if (dragging) { + origin[0] = xExtent[0] - origin[0]; + origin[1] = yExtent[0] - origin[1]; + } else if (resizing) { + var ex = +/w$/.test(resizing), ey = +/^n/.test(resizing); + offset = [ xExtent[1 - ex] - origin[0], yExtent[1 - ey] - origin[1] ]; + origin[0] = xExtent[ex]; + origin[1] = yExtent[ey]; + } else if (d3.event.altKey) center = origin.slice(); + g.style("pointer-events", "none").selectAll(".resize").style("display", null); + d3.select("body").style("cursor", eventTarget.style("cursor")); + event_({ + type: "brushstart" + }); + brushmove(); + function keydown() { + if (d3.event.keyCode == 32) { + if (!dragging) { + center = null; + origin[0] -= xExtent[1]; + origin[1] -= yExtent[1]; + dragging = 2; + } + d3_eventPreventDefault(); + } + } + function keyup() { + if (d3.event.keyCode == 32 && dragging == 2) { + origin[0] += xExtent[1]; + origin[1] += yExtent[1]; + dragging = 0; + d3_eventPreventDefault(); + } + } + function brushmove() { + var point = d3.mouse(target), moved = false; + if (offset) { + point[0] += offset[0]; + point[1] += offset[1]; + } + if (!dragging) { + if (d3.event.altKey) { + if (!center) center = [ (xExtent[0] + xExtent[1]) / 2, (yExtent[0] + yExtent[1]) / 2 ]; + origin[0] = xExtent[+(point[0] < center[0])]; + origin[1] = yExtent[+(point[1] < center[1])]; + } else center = null; + } + if (resizingX && move1(point, x, 0)) { + redrawX(g); + moved = true; + } + if (resizingY && move1(point, y, 1)) { + redrawY(g); + moved = true; + } + if (moved) { + redraw(g); + event_({ + type: "brush", + mode: dragging ? "move" : "resize" + }); + } + } + function move1(point, scale, i) { + var range = d3_scaleRange(scale), r0 = range[0], r1 = range[1], position = origin[i], extent = i ? yExtent : xExtent, size = extent[1] - extent[0], min, max; + if (dragging) { + r0 -= position; + r1 -= size + position; + } + min = (i ? yClamp : xClamp) ? Math.max(r0, Math.min(r1, point[i])) : point[i]; + if (dragging) { + max = (min += position) + size; + } else { + if (center) position = Math.max(r0, Math.min(r1, 2 * center[i] - min)); + if (position < min) { + max = min; + min = position; + } else { + max = position; + } + } + if (extent[0] != min || extent[1] != max) { + if (i) yExtentDomain = null; else xExtentDomain = null; + extent[0] = min; + extent[1] = max; + return true; + } + } + function brushend() { + brushmove(); + g.style("pointer-events", "all").selectAll(".resize").style("display", brush.empty() ? "none" : null); + d3.select("body").style("cursor", null); + w.on("mousemove.brush", null).on("mouseup.brush", null).on("touchmove.brush", null).on("touchend.brush", null).on("keydown.brush", null).on("keyup.brush", null); + dragRestore(); + event_({ + type: "brushend" + }); + } + } + brush.x = function(z) { + if (!arguments.length) return x; + x = z; + resizes = d3_svg_brushResizes[!x << 1 | !y]; + return brush; + }; + brush.y = function(z) { + if (!arguments.length) return y; + y = z; + resizes = d3_svg_brushResizes[!x << 1 | !y]; + return brush; + }; + brush.clamp = function(z) { + if (!arguments.length) return x && y ? [ xClamp, yClamp ] : x ? xClamp : y ? yClamp : null; + if (x && y) xClamp = !!z[0], yClamp = !!z[1]; else if (x) xClamp = !!z; else if (y) yClamp = !!z; + return brush; + }; + brush.extent = function(z) { + var x0, x1, y0, y1, t; + if (!arguments.length) { + if (x) { + if (xExtentDomain) { + x0 = xExtentDomain[0], x1 = xExtentDomain[1]; + } else { + x0 = xExtent[0], x1 = xExtent[1]; + if (x.invert) x0 = x.invert(x0), x1 = x.invert(x1); + if (x1 < x0) t = x0, x0 = x1, x1 = t; + } + } + if (y) { + if (yExtentDomain) { + y0 = yExtentDomain[0], y1 = yExtentDomain[1]; + } else { + y0 = yExtent[0], y1 = yExtent[1]; + if (y.invert) y0 = y.invert(y0), y1 = y.invert(y1); + if (y1 < y0) t = y0, y0 = y1, y1 = t; + } + } + return x && y ? [ [ x0, y0 ], [ x1, y1 ] ] : x ? [ x0, x1 ] : y && [ y0, y1 ]; + } + if (x) { + x0 = z[0], x1 = z[1]; + if (y) x0 = x0[0], x1 = x1[0]; + xExtentDomain = [ x0, x1 ]; + if (x.invert) x0 = x(x0), x1 = x(x1); + if (x1 < x0) t = x0, x0 = x1, x1 = t; + if (x0 != xExtent[0] || x1 != xExtent[1]) xExtent = [ x0, x1 ]; + } + if (y) { + y0 = z[0], y1 = z[1]; + if (x) y0 = y0[1], y1 = y1[1]; + yExtentDomain = [ y0, y1 ]; + if (y.invert) y0 = y(y0), y1 = y(y1); + if (y1 < y0) t = y0, y0 = y1, y1 = t; + if (y0 != yExtent[0] || y1 != yExtent[1]) yExtent = [ y0, y1 ]; + } + return brush; + }; + brush.clear = function() { + if (!brush.empty()) { + xExtent = [ 0, 0 ], yExtent = [ 0, 0 ]; + xExtentDomain = yExtentDomain = null; + } + return brush; + }; + brush.empty = function() { + return !!x && xExtent[0] == xExtent[1] || !!y && yExtent[0] == yExtent[1]; + }; + return d3.rebind(brush, event, "on"); + }; + var d3_svg_brushCursor = { + n: "ns-resize", + e: "ew-resize", + s: "ns-resize", + w: "ew-resize", + nw: "nwse-resize", + ne: "nesw-resize", + se: "nwse-resize", + sw: "nesw-resize" + }; + var d3_svg_brushResizes = [ [ "n", "e", "s", "w", "nw", "ne", "se", "sw" ], [ "e", "w" ], [ "n", "s" ], [] ]; + var d3_time_format = d3_time.format = d3_locale_enUS.timeFormat; + var d3_time_formatUtc = d3_time_format.utc; + var d3_time_formatIso = d3_time_formatUtc("%Y-%m-%dT%H:%M:%S.%LZ"); + d3_time_format.iso = Date.prototype.toISOString && +new Date("2000-01-01T00:00:00.000Z") ? d3_time_formatIsoNative : d3_time_formatIso; + function d3_time_formatIsoNative(date) { + return date.toISOString(); + } + d3_time_formatIsoNative.parse = function(string) { + var date = new Date(string); + return isNaN(date) ? null : date; + }; + d3_time_formatIsoNative.toString = d3_time_formatIso.toString; + d3_time.second = d3_time_interval(function(date) { + return new d3_date(Math.floor(date / 1e3) * 1e3); + }, function(date, offset) { + date.setTime(date.getTime() + Math.floor(offset) * 1e3); + }, function(date) { + return date.getSeconds(); + }); + d3_time.seconds = d3_time.second.range; + d3_time.seconds.utc = d3_time.second.utc.range; + d3_time.minute = d3_time_interval(function(date) { + return new d3_date(Math.floor(date / 6e4) * 6e4); + }, function(date, offset) { + date.setTime(date.getTime() + Math.floor(offset) * 6e4); + }, function(date) { + return date.getMinutes(); + }); + d3_time.minutes = d3_time.minute.range; + d3_time.minutes.utc = d3_time.minute.utc.range; + d3_time.hour = d3_time_interval(function(date) { + var timezone = date.getTimezoneOffset() / 60; + return new d3_date((Math.floor(date / 36e5 - timezone) + timezone) * 36e5); + }, function(date, offset) { + date.setTime(date.getTime() + Math.floor(offset) * 36e5); + }, function(date) { + return date.getHours(); + }); + d3_time.hours = d3_time.hour.range; + d3_time.hours.utc = d3_time.hour.utc.range; + d3_time.month = d3_time_interval(function(date) { + date = d3_time.day(date); + date.setDate(1); + return date; + }, function(date, offset) { + date.setMonth(date.getMonth() + offset); + }, function(date) { + return date.getMonth(); + }); + d3_time.months = d3_time.month.range; + d3_time.months.utc = d3_time.month.utc.range; + function d3_time_scale(linear, methods, format) { + function scale(x) { + return linear(x); + } + scale.invert = function(x) { + return d3_time_scaleDate(linear.invert(x)); + }; + scale.domain = function(x) { + if (!arguments.length) return linear.domain().map(d3_time_scaleDate); + linear.domain(x); + return scale; + }; + function tickMethod(extent, count) { + var span = extent[1] - extent[0], target = span / count, i = d3.bisect(d3_time_scaleSteps, target); + return i == d3_time_scaleSteps.length ? [ methods.year, d3_scale_linearTickRange(extent.map(function(d) { + return d / 31536e6; + }), count)[2] ] : !i ? [ d3_time_scaleMilliseconds, d3_scale_linearTickRange(extent, count)[2] ] : methods[target / d3_time_scaleSteps[i - 1] < d3_time_scaleSteps[i] / target ? i - 1 : i]; + } + scale.nice = function(interval, skip) { + var domain = scale.domain(), extent = d3_scaleExtent(domain), method = interval == null ? tickMethod(extent, 10) : typeof interval === "number" && tickMethod(extent, interval); + if (method) interval = method[0], skip = method[1]; + function skipped(date) { + return !isNaN(date) && !interval.range(date, d3_time_scaleDate(+date + 1), skip).length; + } + return scale.domain(d3_scale_nice(domain, skip > 1 ? { + floor: function(date) { + while (skipped(date = interval.floor(date))) date = d3_time_scaleDate(date - 1); + return date; + }, + ceil: function(date) { + while (skipped(date = interval.ceil(date))) date = d3_time_scaleDate(+date + 1); + return date; + } + } : interval)); + }; + scale.ticks = function(interval, skip) { + var extent = d3_scaleExtent(scale.domain()), method = interval == null ? tickMethod(extent, 10) : typeof interval === "number" ? tickMethod(extent, interval) : !interval.range && [ { + range: interval + }, skip ]; + if (method) interval = method[0], skip = method[1]; + return interval.range(extent[0], d3_time_scaleDate(+extent[1] + 1), skip < 1 ? 1 : skip); + }; + scale.tickFormat = function() { + return format; + }; + scale.copy = function() { + return d3_time_scale(linear.copy(), methods, format); + }; + return d3_scale_linearRebind(scale, linear); + } + function d3_time_scaleDate(t) { + return new Date(t); + } + var d3_time_scaleSteps = [ 1e3, 5e3, 15e3, 3e4, 6e4, 3e5, 9e5, 18e5, 36e5, 108e5, 216e5, 432e5, 864e5, 1728e5, 6048e5, 2592e6, 7776e6, 31536e6 ]; + var d3_time_scaleLocalMethods = [ [ d3_time.second, 1 ], [ d3_time.second, 5 ], [ d3_time.second, 15 ], [ d3_time.second, 30 ], [ d3_time.minute, 1 ], [ d3_time.minute, 5 ], [ d3_time.minute, 15 ], [ d3_time.minute, 30 ], [ d3_time.hour, 1 ], [ d3_time.hour, 3 ], [ d3_time.hour, 6 ], [ d3_time.hour, 12 ], [ d3_time.day, 1 ], [ d3_time.day, 2 ], [ d3_time.week, 1 ], [ d3_time.month, 1 ], [ d3_time.month, 3 ], [ d3_time.year, 1 ] ]; + var d3_time_scaleLocalFormat = d3_time_format.multi([ [ ".%L", function(d) { + return d.getMilliseconds(); + } ], [ ":%S", function(d) { + return d.getSeconds(); + } ], [ "%I:%M", function(d) { + return d.getMinutes(); + } ], [ "%I %p", function(d) { + return d.getHours(); + } ], [ "%a %d", function(d) { + return d.getDay() && d.getDate() != 1; + } ], [ "%b %d", function(d) { + return d.getDate() != 1; + } ], [ "%B", function(d) { + return d.getMonth(); + } ], [ "%Y", d3_true ] ]); + var d3_time_scaleMilliseconds = { + range: function(start, stop, step) { + return d3.range(Math.ceil(start / step) * step, +stop, step).map(d3_time_scaleDate); + }, + floor: d3_identity, + ceil: d3_identity + }; + d3_time_scaleLocalMethods.year = d3_time.year; + d3_time.scale = function() { + return d3_time_scale(d3.scale.linear(), d3_time_scaleLocalMethods, d3_time_scaleLocalFormat); + }; + var d3_time_scaleUtcMethods = d3_time_scaleLocalMethods.map(function(m) { + return [ m[0].utc, m[1] ]; + }); + var d3_time_scaleUtcFormat = d3_time_formatUtc.multi([ [ ".%L", function(d) { + return d.getUTCMilliseconds(); + } ], [ ":%S", function(d) { + return d.getUTCSeconds(); + } ], [ "%I:%M", function(d) { + return d.getUTCMinutes(); + } ], [ "%I %p", function(d) { + return d.getUTCHours(); + } ], [ "%a %d", function(d) { + return d.getUTCDay() && d.getUTCDate() != 1; + } ], [ "%b %d", function(d) { + return d.getUTCDate() != 1; + } ], [ "%B", function(d) { + return d.getUTCMonth(); + } ], [ "%Y", d3_true ] ]); + d3_time_scaleUtcMethods.year = d3_time.year.utc; + d3_time.scale.utc = function() { + return d3_time_scale(d3.scale.linear(), d3_time_scaleUtcMethods, d3_time_scaleUtcFormat); + }; + d3.text = d3_xhrType(function(request) { + return request.responseText; + }); + d3.json = function(url, callback) { + return d3_xhr(url, "application/json", d3_json, callback); + }; + function d3_json(request) { + return JSON.parse(request.responseText); + } + d3.html = function(url, callback) { + return d3_xhr(url, "text/html", d3_html, callback); + }; + function d3_html(request) { + var range = d3_document.createRange(); + range.selectNode(d3_document.body); + return range.createContextualFragment(request.responseText); + } + d3.xml = d3_xhrType(function(request) { + return request.responseXML; + }); + if (typeof define === "function" && define.amd) { + define(d3); + } else if (typeof module === "object" && module.exports) { + module.exports = d3; + } else { + this.d3 = d3; + } +}(); diff --git a/Afni_proc_through_nipype/files/_0x2a29d196401e292490f5a331c7b8bf30.json b/Afni_proc_through_nipype/files/_0x2a29d196401e292490f5a331c7b8bf30.json new file mode 100644 index 00000000..8e2b9c7c --- /dev/null +++ b/Afni_proc_through_nipype/files/_0x2a29d196401e292490f5a331c7b8bf30.json @@ -0,0 +1,24 @@ +[ + [ + "base_directory", + "." + ], + [ + "force_lists", + false + ], + [ + "raise_on_empty", + true + ], + [ + "sort_filelist", + true + ], + [ + "needed_outputs", + [ + "command" + ] + ] +] \ No newline at end of file diff --git a/Afni_proc_through_nipype/files/_inputs.pklz b/Afni_proc_through_nipype/files/_inputs.pklz new file mode 100644 index 0000000000000000000000000000000000000000..9f9f79e4480627e60c30f9b4364366f0b4399ed2 GIT binary patch literal 116 zcmV-)0E_=0iwFo&%z9-4|6gftaCLNZE^upXdMbHA;e%HCv{=(-7+jN-$$}&U|HcQ&wztc?@@%C}MR#Y-QXLD};?`k>DkEEV5NfVO5@$&q|&oOixFQmI=d?1u3JK{Orj>eVDYnH$! z%v?IWcas$mDEHa|_TEvYYdU%(X{4>sV%SOnPP|3z*5LH`*-5|ON2$qbwdWr8jg#1f zZMvi!fV65c@8*`^WR?u>0SIrKlrFd2RYg;qS>0d$H{Frq);OjODYobVi0xMRh}GmP zUBs~MMNQ80+Qe}9MrWu<30G0Ul0!Ghw(%4njfo5s$~4}s>fM(*=aRJ-<`w1RCA5Q@ zdn2`%B4ZiP$E1+!?(?!lXN+vn4gC2LfH-hJwp8m0u_TNoeS+2!eKwD1l%kxRx6~9v}(01s4 zLW-+=O=_PQZZR)VC)AWkTM_ZlXepVKsbfWBc`Ku^F@#_)C!-9NU$Q9|sPLmfKdC5n zZk2p?OA~f#twd_Xd~iB|kVz`m;5o=95oYPvhExv4Zw#P%*VJ|D5I3gn`{KsUnMST5 z{&ub=90S!E4EtxN7z2ltY&mb}*L-~}O|B<2l=zAy1oEQY63gvze=g1HmvFci@G@Cn z8Om3Ydy73WAJVEDb{)p09c3w;kMF~t-lKD z%(o$9o7B_Z@2*siFqQV;P1s33ryKAK=QgBnTiN5Vzb5jTjKS5%El@W90%GdU77F9G zOq7L37(q4_*l#JU$!g(!67fywVC~hc%;NXo{PS1({T;TLYJn$UJMAWeD$^8wG33Lu zVsLhP(jU<9Y{&KC#^mg^@mQ5}>Mr7wDzCclVl}$KgWls&;1Tu| oQGvL{%DO;b`MXHr0lVd?Lf90lpv(BfohIx33$#K}?N0{)0LvX9Pyhe` literal 0 HcmV?d00001 diff --git a/Afni_proc_through_nipype/files/_report/report.rst b/Afni_proc_through_nipype/files/_report/report.rst new file mode 100644 index 00000000..3f6332be --- /dev/null +++ b/Afni_proc_through_nipype/files/_report/report.rst @@ -0,0 +1,114 @@ +Node: files (io) +================ + + + Hierarchy : Afni_proc_through_nipype.files + Exec ID : files + + +Original Inputs +--------------- + + +* base_directory : . +* force_lists : False +* raise_on_empty : True +* sort_filelist : True + + +Execution Inputs +---------------- + + +* base_directory : . +* force_lists : False +* raise_on_empty : True +* sort_filelist : True + + +Execution Outputs +----------------- + + +* command : /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel + + +Runtime info +------------ + + +* duration : 0.000182 +* hostname : ptb-03230001.irisa.fr +* prev_wd : /home/jlefortb/narps_open_pipelines +* working_dir : /home/jlefortb/narps_open_pipelines/Afni_proc_through_nipype/files + + +Environment +~~~~~~~~~~~ + + +* COLORTERM : truecolor +* DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/670967/bus +* DEBUGINFOD_URLS : https://debuginfod.fedoraproject.org/ +* DESKTOP_SESSION : gnome +* DISPLAY : :0 +* EDITOR : /usr/bin/nano +* FSLDIR : /usr/local/fsl +* FSLGECUDAQ : cuda.q +* FSLMULTIFILEQUIT : TRUE +* FSLOUTPUTTYPE : NIFTI_GZ +* FSLTCLSH : /usr/local/fsl/bin/fsltclsh +* FSLWISH : /usr/local/fsl/bin/fslwish +* FSL_LOAD_NIFTI_EXTENSIONS : 0 +* FSL_SKIP_GLOBAL : 0 +* GDMSESSION : gnome +* GDM_LANG : en_US.UTF-8 +* GNOME_SETUP_DISPLAY : :1 +* GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/3627c221_9f8a_4ca7_a192_68617ea35d25 +* GNOME_TERMINAL_SERVICE : :1.180 +* GUESTFISH_INIT : \e[1;34m +* GUESTFISH_OUTPUT : \e[0m +* GUESTFISH_PS1 : \[\e[1;32m\]>\[\e[0;31m\] +* GUESTFISH_RESTORE : \e[0m +* HISTCONTROL : ignoredups +* HISTSIZE : 1000 +* HOME : /home/jlefortb +* HOSTNAME : ptb-03230001.irisa.fr +* KDEDIRS : /usr +* LANG : en_US.UTF-8 +* LESSOPEN : ||/usr/bin/lesspipe.sh %s +* LOGNAME : jlefortb +* LS_COLORS : rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90: +* MAIL : /var/spool/mail/jlefortb +* MOZ_GMP_PATH : /usr/lib64/mozilla/plugins/gmp-gmpopenh264/system-installed +* PATH : /home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/reproduction/bin:/usr/local/fsl/share/fsl/bin:/usr/local/fsl/share/fsl/bin:/home/jlefortb/.local/bin:/home/jlefortb/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/jlefortb/abin:/home/jlefortb/abin +* PS1 : (reproduction) [\u@\h (Fedora 37) \W]$ +* PWD : /home/jlefortb +* QTDIR : /usr/lib64/qt-3.3 +* QTINC : /usr/lib64/qt-3.3/include +* QTLIB : /usr/lib64/qt-3.3/lib +* QT_IM_MODULE : ibus +* R_LIBS : /home/jlefortb/R +* SESSION_MANAGER : local/unix:@/tmp/.ICE-unix/12471,unix/unix:/tmp/.ICE-unix/12471 +* SHELL : /bin/bash +* SHLVL : 1 +* SSH_AUTH_SOCK : /run/user/670967/keyring/ssh +* SYSTEMD_EXEC_PID : 12526 +* TERM : xterm-256color +* USER : jlefortb +* USERNAME : jlefortb +* VIRTUAL_ENV : /home/jlefortb/reproduction +* VIRTUAL_ENV_PROMPT : (reproduction) +* VTE_VERSION : 7006 +* WAYLAND_DISPLAY : wayland-0 +* XAUTHORITY : /run/user/670967/.mutter-Xwaylandauth.LIAOF2 +* XDG_CURRENT_DESKTOP : GNOME +* XDG_DATA_DIRS : /home/jlefortb/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share/:/usr/share/ +* XDG_MENU_PREFIX : gnome- +* XDG_RUNTIME_DIR : /run/user/670967 +* XDG_SESSION_CLASS : user +* XDG_SESSION_DESKTOP : gnome +* XDG_SESSION_TYPE : wayland +* XMODIFIERS : @im=ibus +* _ : /home/jlefortb/reproduction/bin/ipython + diff --git a/Afni_proc_through_nipype/files/result_files.pklz b/Afni_proc_through_nipype/files/result_files.pklz new file mode 100644 index 0000000000000000000000000000000000000000..dd4dbcf78cdeb6ed6d733c82ef194d7793ba6b30 GIT binary patch literal 2388 zcmV-a39I%WiwFo&%z9-4|8iw>b!>EBW@&6?b1raeYj#u=7toovUa zB<6`6%RluIXSpE?2D*VT z*Vi%PaOC@55GL_m>Aa_laAb$c-;*bQN&c8Tj@Pv@3b5t5N#ohlT-}XKPZEE6S+(UQ z@ht_}$OsQC8(~luuLY4CS`JD^OYzEH4XgJbl=J`QtC|)G-!oUMS`YLatC!^V`+pX0=e{DuqI!xSfz;V=I7}#HAJGxhTs?e1q>>E)TgHL5>tr zQKWWDYt~w|hS*Kwr?zM4HXpgxwEBz>9iQi!2J& zPi8678!?HO3;BGWNZN|psx?9KYd`Gg@EHrN_+oB5`WIaD)JFV0bj1jl$%0g81= zZ9~Fur+SGtS9hVxu6JJ5llabJ<$xn{yDwg0Lx+Nw6e;?XIN0 zPU3Ga<&Sfs5cW;(Xl_f7!VxD+wf2FK#P{jSbOE%xB3+vGM!l)YwN?Xa1$IbJ;d<&p zZVMLvd7A`&DJSbaMeJTm%JNkzZpez3)}@jh{daX~DZsn=s%h=!3p>S9)pk=*t~#UL ze7@>iyQTb2u~@}kD&MS{=b&%Sx_0t~s=;6{NO6H+XQsBYQz}$(v^xjG-C};HRID00 zF%eGErcm_&lnB6KIe|GjuHgyACW8?+soAkLn3pER z;tv^&Xv1N9oQ19-Gr#Zn8TR`Q#X|=B6o*4S!&7GblpVw92TU8jOP#>u1$;(*Wd`}i zl*+v^#cXT~Q47qV6N)E@@f8|0Xpafh@keATkDvBZ$C7lZ7@r0X|x6 zH#8S~gf`a4Xx^SvgZ*B&E4EaI8Z=tzQM%gI;PeNsa_<5|1wwM`Q0l6^nyiVf!zBLf z!hiq)RW&0cC8RJ`6}3ZPJt?Gh^9zrogwHoUmD* zQ|)ybhPOK;OAo*QJ|mcLoxtSY!Qs)ym*i#v@vHkXVYi=M&2B@(CiHfh5UmB0^_z=} zB6bhqA^2WH)U%ogJlD3yBg_O;}Gr2*k6Rf?1izi3w z9n`M9sKe!f+%%SnV%So|`Fc&QX*02VVb5~2b;Tn+fLo=lhrWKoqba#2cVNLIoI+sdMkayL4k5{qx$=(ocLuNU2pXRNvgwSsngj zoxhw(Lts%Gf zYH~6!BDhws!#xga?os+8;OpUN_tK3p-NMVwngsj*L0W0p_dJ_-bjxP0 zbGO0b?7BX?tgg?tYU2%TQ4RLp|5-5J@=wDNoJvu=KJswr>LiR0JQ0jmN9*yr55*43 z;IkvhmK#lTWp0xrZz=gaH!zA7Zn{<0%B9@=XJUn;+z?j95V#^7bZdTq#_2=P7eC{n z2l5;s(+XfGYt!V1cr`%SA&2O7Z!kzZ!zgeK56+fWd;?B~ApFTEp8WPEe3RDBpR!s} zKVG$5KMHaB+;fM#hG{c + + + + + + + +

+ Flare imports
+ hierarchical edge bundling +

+
tension: +
+ + + + + diff --git a/narps_open/pipelines/team_6VV2_wip.py b/narps_open/pipelines/team_6VV2_wip.py index 7c9bf2d3..201290af 100644 --- a/narps_open/pipelines/team_6VV2_wip.py +++ b/narps_open/pipelines/team_6VV2_wip.py @@ -15,6 +15,11 @@ from os.path import join as opj import os import pathlib +from glob import glob +from nilearn import plotting +import matplotlib.pyplot as plt +from nilearn import image +import pandas as pd ######################################################################## ################## FIRST LEVEL ANALYSIS FOR TEAM 6VV2 ################## @@ -22,7 +27,7 @@ # define environment for first level analysis data_dir = "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" -results_dir = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/" +results_dir = "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" path = pathlib.Path(results_dir) path.mkdir(parents=True, exist_ok=True) @@ -38,6 +43,8 @@ subject_list.append(dirs[-3:]) + + # Infosource Node - To iterate on subjects + get directoris paths infosource = Node(interface=IdentityInterface(fields = ['subject_id', 'data_dir', 'results_dir'], data_dir = data_dir, @@ -117,6 +124,33 @@ def run(command, results_dir, subject, data_dir): # wf_run.write_graph() wf_run.run() +#### +# to do: relaunch sub 1 and launch sub 2, then launch part 2 to check which data are mandatory and which we can delete +# because taking a bunch of space (60G) +#### + +# convert BRIK to nii +command = "3dAFNItoNIFTI" +for Afni_file in glob("/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/*.HEAD"): + file_name = Afni_file.split('/')[-1] + nifti_file_name = file_name[:-5] + results_dir = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/results_as_nifti/" + prefixname = opj(results_dir, nifti_file_name) + subprocess.run([command, "-prefix", prefixname, Afni_file]) + +# visualise nifti +for nifi_file in glob("/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/results_as_nifti/*"): + shape = image.load_img(nifi_file).shape + print("shape: ", shape) + if len(shape) > 3: + plotting.plot_stat_map(image.index_img(nifi_file, 0), annotate=False, title=nifi_file.split('/')[-1] + " ind 0", colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') + plotting.plot_stat_map(image.index_img(nifi_file, 30), annotate=False, title=nifi_file.split('/')[-1] + " ind 30", colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') + plotting.plot_stat_map(image.index_img(nifi_file, 60), annotate=False, title=nifi_file.split('/')[-1] + " ind 60", colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') + plt.show() + else: + plotting.plot_stat_map(nifi_file, annotate=False, title=nifi_file.split('/')[-1], colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') + plt.show() + ######################################################################## ################## SECOND LEVEL ANALYSIS FOR TEAM 6VV2 ################# From c59657d84a22580e1ec635fbc6a51cf276ab699a Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Mon, 12 Feb 2024 14:49:06 +0100 Subject: [PATCH 07/10] add stuff --- narps_open/pipelines/team_27SS.firstlevel | 66 +++++++++++++++++++++++ narps_open/pipelines/team_6VV2.firstlevel | 10 ++++ 2 files changed, 76 insertions(+) create mode 100755 narps_open/pipelines/team_27SS.firstlevel diff --git a/narps_open/pipelines/team_27SS.firstlevel b/narps_open/pipelines/team_27SS.firstlevel new file mode 100755 index 00000000..f536b331 --- /dev/null +++ b/narps_open/pipelines/team_27SS.firstlevel @@ -0,0 +1,66 @@ +#!/bin/tcsh + +# created by team 6VV2, reproduced by Narps reproducibility team +# creation date: 22 June 2023 +# read and ran by team_6VV2.py script +# version afni used by the team : AFNI Version 19.0.01 Tiberius +# version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus +# Last update: June 2023 + +# Store arguments (directory where to store results, subjects list, directory where data are stored) +set expdir="$1" +set subject="$2" +set datadir="$3" + + +afni_proc.py \ + -script ${expdir}/proc.${subject}.block \ + -scr_overwrite \ + -subj_id ${subject} \ + -out_dir ${expdir}/${subject}.results.block \ + -dsets ${datadir}/${subject}/func/${subject}_task-MGT_run-01_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-02_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-03_bold.nii.gz \ + ${datadir}/${subject}/func/${subject}_task-MGT_run-04_bold.nii.gz \ + -copy_anat ${datadir}/${subject}/anat/${subject}_T1w.nii.gz \ + -anat_has_skull yes \ + -blocks despike tshift align tlrc volreg blur mask scale regress \ + -despike_new yes \ + -tlrc_base MNI152_T1_2009c+tlrc \ + -tlrc_NL_warp \ + -align_opts_aea \ + -giant_move \ + -cost lpc+ZZ \ + -volreg_align_to MIN_OUTLIER \ + -volreg_tlrc_warp \ + -volreg_align_e2a \ + -blur_in_automask \ + -regress_stim_times \ + ${datadir}/${subject}/func/times+gain.1D \ + ${datadir}/${subject}/func/times+loss.1D \ + -regress_stim_types AM2 \ + -regress_stim_labels \ + GAIN \ + LOSS \ + -regress_basis \ + 'BLOCK(4,1)' \ + -mask_apply anat \ + -regress_motion_per_run \ + -test_stim_files no \ + -regress_opts_3dD \ + -GOFORIT 8 \ + -jobs 6 \ + -regress_censor_motion 0.2 \ + -regress_apply_mot_types demean deriv \ + -regress_censor_first_trs 3 \ + -regress_est_blur_errts \ + -execute + + +# extract beta values +3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] +3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] + +# convert BRIK to nii +3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc +3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc \ No newline at end of file diff --git a/narps_open/pipelines/team_6VV2.firstlevel b/narps_open/pipelines/team_6VV2.firstlevel index f536b331..41a56649 100755 --- a/narps_open/pipelines/team_6VV2.firstlevel +++ b/narps_open/pipelines/team_6VV2.firstlevel @@ -7,6 +7,16 @@ # version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus # Last update: June 2023 +""" +exemple run: +In a terminal, path /home/jlefortb/narps_open_pipelines, run: +/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/, sub-001, /home/jlefortb/narps_open_pipelines/data/original/ds001734/ + + +""" + + + # Store arguments (directory where to store results, subjects list, directory where data are stored) set expdir="$1" set subject="$2" From f41f63040b31dfa44eaa44b62f693a3a524cf48f Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Tue, 13 Feb 2024 11:48:49 +0100 Subject: [PATCH 08/10] update 27SS file to compare with 6VV2 --- narps_open/pipelines/team_27SS.firstlevel | 95 +++++++++++++++++------ 1 file changed, 70 insertions(+), 25 deletions(-) diff --git a/narps_open/pipelines/team_27SS.firstlevel b/narps_open/pipelines/team_27SS.firstlevel index f536b331..9d1ba399 100755 --- a/narps_open/pipelines/team_27SS.firstlevel +++ b/narps_open/pipelines/team_27SS.firstlevel @@ -1,11 +1,20 @@ #!/bin/tcsh -# created by team 6VV2, reproduced by Narps reproducibility team -# creation date: 22 June 2023 -# read and ran by team_6VV2.py script -# version afni used by the team : AFNI Version 19.0.01 Tiberius -# version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus -# Last update: June 2023 +# Reproduction of 27SS pipeline by the Narps reproducibility team +# creation date: 13 February 2024 +# version afni used by the team: AFNI 18.3.12 +# version afni used by the reproducibility team: AFNI Version 23.0.02 Commodus + +# Store arguments (directory where to store results, subjects list, directory where data are stored) +set expdir="$1" # /home/jlefortb/narps_open_pipelines/data/results/team_27SS_afni/firstlevel/ +set subject="$2" # sub-001 +set datadir="$3" # /home/jlefortb/narps_open_pipelines/data/original/ds001734/ + +# In a terminal, path /home/jlefortb/narps_open_pipelines, run: +# /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_27SS.firstlevel /home/jlefortb/narps_open_pipelines/data/results/team_27SS_afni/firstlevel/, sub-001, /home/jlefortb/narps_open_pipelines/data/original/ds001734/ + + + # Store arguments (directory where to store results, subjects list, directory where data are stored) set expdir="$1" @@ -14,53 +23,89 @@ set datadir="$3" afni_proc.py \ + # Spécification du script de sortie -script ${expdir}/proc.${subject}.block \ + # Autoriser l'écrasement du script existant -scr_overwrite \ + # Spécification de l'identifiant du sujet -subj_id ${subject} \ + # Spécification du répertoire de sortie -out_dir ${expdir}/${subject}.results.block \ + # Spécification des ensembles de données EPI -dsets ${datadir}/${subject}/func/${subject}_task-MGT_run-01_bold.nii.gz \ ${datadir}/${subject}/func/${subject}_task-MGT_run-02_bold.nii.gz \ ${datadir}/${subject}/func/${subject}_task-MGT_run-03_bold.nii.gz \ ${datadir}/${subject}/func/${subject}_task-MGT_run-04_bold.nii.gz \ + # Copie de l'image anatomique -copy_anat ${datadir}/${subject}/anat/${subject}_T1w.nii.gz \ + # Spécification de la présence du crâne dans l'image anatomique -anat_has_skull yes \ + # Blocs de prétraitement inclus dans le pipeline -blocks despike tshift align tlrc volreg blur mask scale regress \ + # Option de déspike -despike_new yes \ + # Spécification de la base TLRC -tlrc_base MNI152_T1_2009c+tlrc \ - -tlrc_NL_warp \ + # Specify blur size + -blur_size 6.0 \ + # Options d'alignement -align_opts_aea \ + # Déplacement géant -giant_move \ + # Coût de l'alignement -cost lpc+ZZ \ + # Options for temporal shift + -tshift_opts_ts -quintic \ + # Alignement des volumes EPI sur l'outlier minimal -volreg_align_to MIN_OUTLIER \ - -volreg_tlrc_warp \ + # Interpolation method for volume registration + -volreg_interp cubic \ + # Alignement EPI vers anatomique -volreg_align_e2a \ + # Flou dans le masque automatique -blur_in_automask \ + # Model motion per run + -regress_motion_per_run \ + # Censor motion outliers with framewise displacement greater than 1.5 mm + -regress_censor_motion 1.5 \ + # Specify the regressors and their corresponding labels -regress_stim_times \ ${datadir}/${subject}/func/times+gain.1D \ ${datadir}/${subject}/func/times+loss.1D \ - -regress_stim_types AM2 \ - -regress_stim_labels \ - GAIN \ - LOSS \ - -regress_basis \ - 'BLOCK(4,1)' \ + -regress_stim_labels task nuisance \ + # Modélisation des régresseurs de stimulus + -regress_basis 'BLOCK(4,1)' \ + # Application du masque anatomique -mask_apply anat \ - -regress_motion_per_run \ - -test_stim_files no \ + # Options supplémentaires pour 3dDeconvolve -regress_opts_3dD \ -GOFORIT 8 \ -jobs 6 \ - -regress_censor_motion 0.2 \ - -regress_apply_mot_types demean deriv \ + -ortvec ${datadir}/${subject}/func/motion_parameters.1D motion_params \ + -allzero_OK \ + # Application des types de mouvement pour la régression + -regress_apply_mot_types demean \ + # Censure des premiers TRs -regress_censor_first_trs 3 \ + # Estimation des erreurs de flou + # Estimate the blur epochs + -regress_est_blur_epits \ + # Estimate the blur error times -regress_est_blur_errts \ - -execute + # Exécution du pipeline directement après création du script TCSH + # No gradient distortion correction specified + # No distortion correction specified + # No intensity correction specified + # No intensity normalization specified + # No spatial smoothing specified + # Execute the pipeline script +# -execute -# extract beta values -3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] -3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] +# # extract beta values +# 3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] +# 3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] -# convert BRIK to nii -3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc -3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc \ No newline at end of file +# # convert BRIK to nii +# 3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc +# 3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc \ No newline at end of file From c83679882f02f389202b88944200fd93040a4add Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Tue, 13 Feb 2024 14:18:04 +0100 Subject: [PATCH 09/10] false manip cancelled --- narps_open/pipelines/team_6VV2.firstlevel | 53 ++++++++++++++++++----- 1 file changed, 42 insertions(+), 11 deletions(-) diff --git a/narps_open/pipelines/team_6VV2.firstlevel b/narps_open/pipelines/team_6VV2.firstlevel index 41a56649..435d6324 100755 --- a/narps_open/pipelines/team_6VV2.firstlevel +++ b/narps_open/pipelines/team_6VV2.firstlevel @@ -7,13 +7,11 @@ # version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus # Last update: June 2023 -""" -exemple run: -In a terminal, path /home/jlefortb/narps_open_pipelines, run: -/home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/, sub-001, /home/jlefortb/narps_open_pipelines/data/original/ds001734/ +# exemple run: +# In a terminal, path /home/jlefortb/narps_open_pipelines, run: +# tcsh /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/, sub-001, /home/jlefortb/narps_open_pipelines/data/original/ds001734/ -""" @@ -67,10 +65,43 @@ afni_proc.py \ -execute -# extract beta values -3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] -3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] +# # extract beta values +# 3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] +# 3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] -# convert BRIK to nii -3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc -3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc \ No newline at end of file +# # convert BRIK to nii +# 3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc +# 3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc + + + +# run this file with "tcsh 6VV2_afni_proc.simple" + +# create 1D stimuli file : +# import pandas as pd + +# df_run1 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-01_events.tsv", sep="\t") +# df_run1 = df_run1[["onset", "gain", "loss"]].T +# df_run2 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-02_events.tsv", sep="\t") +# df_run2 = df_run2[["onset", "gain", "loss"]].T +# df_run3 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-03_events.tsv", sep="\t") +# df_run3 = df_run3[["onset", "gain", "loss"]].T +# df_run4 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-04_events.tsv", sep="\t") +# df_run4 = df_run4[["onset", "gain", "loss"]].T + +# df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) +# df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] +# df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] +# df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] +# df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] +# df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) +# df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] +# df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] +# df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] +# df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] + + +# df_gain.to_csv('/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/times+gain.1D', +# sep='\t', index=False, header=False) +# df_loss.to_csv('/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/times+loss.1D', +# sep='\t', index=False, header=False) From 206d80886edf22aec08a866eeedc1f06cc120509 Mon Sep 17 00:00:00 2001 From: jlefortbesnard Date: Tue, 13 Feb 2024 16:30:54 +0100 Subject: [PATCH 10/10] start new team --- narps_open/pipelines/team_27SS.firstlevel | 111 --------- narps_open/pipelines/team_6VV2.firstlevel | 107 -------- narps_open/pipelines/team_6VV2_wip.py | 231 ------------------ narps_open/pipelines/team_80GC.firstlevel | 30 +++ ...6VV2.secondlevel => team_80GC.secondlevel} | 0 5 files changed, 30 insertions(+), 449 deletions(-) delete mode 100755 narps_open/pipelines/team_27SS.firstlevel delete mode 100755 narps_open/pipelines/team_6VV2.firstlevel delete mode 100644 narps_open/pipelines/team_6VV2_wip.py create mode 100755 narps_open/pipelines/team_80GC.firstlevel rename narps_open/pipelines/{team_6VV2.secondlevel => team_80GC.secondlevel} (100%) diff --git a/narps_open/pipelines/team_27SS.firstlevel b/narps_open/pipelines/team_27SS.firstlevel deleted file mode 100755 index 9d1ba399..00000000 --- a/narps_open/pipelines/team_27SS.firstlevel +++ /dev/null @@ -1,111 +0,0 @@ -#!/bin/tcsh - -# Reproduction of 27SS pipeline by the Narps reproducibility team -# creation date: 13 February 2024 -# version afni used by the team: AFNI 18.3.12 -# version afni used by the reproducibility team: AFNI Version 23.0.02 Commodus - -# Store arguments (directory where to store results, subjects list, directory where data are stored) -set expdir="$1" # /home/jlefortb/narps_open_pipelines/data/results/team_27SS_afni/firstlevel/ -set subject="$2" # sub-001 -set datadir="$3" # /home/jlefortb/narps_open_pipelines/data/original/ds001734/ - -# In a terminal, path /home/jlefortb/narps_open_pipelines, run: -# /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_27SS.firstlevel /home/jlefortb/narps_open_pipelines/data/results/team_27SS_afni/firstlevel/, sub-001, /home/jlefortb/narps_open_pipelines/data/original/ds001734/ - - - - -# Store arguments (directory where to store results, subjects list, directory where data are stored) -set expdir="$1" -set subject="$2" -set datadir="$3" - - -afni_proc.py \ - # Spécification du script de sortie - -script ${expdir}/proc.${subject}.block \ - # Autoriser l'écrasement du script existant - -scr_overwrite \ - # Spécification de l'identifiant du sujet - -subj_id ${subject} \ - # Spécification du répertoire de sortie - -out_dir ${expdir}/${subject}.results.block \ - # Spécification des ensembles de données EPI - -dsets ${datadir}/${subject}/func/${subject}_task-MGT_run-01_bold.nii.gz \ - ${datadir}/${subject}/func/${subject}_task-MGT_run-02_bold.nii.gz \ - ${datadir}/${subject}/func/${subject}_task-MGT_run-03_bold.nii.gz \ - ${datadir}/${subject}/func/${subject}_task-MGT_run-04_bold.nii.gz \ - # Copie de l'image anatomique - -copy_anat ${datadir}/${subject}/anat/${subject}_T1w.nii.gz \ - # Spécification de la présence du crâne dans l'image anatomique - -anat_has_skull yes \ - # Blocs de prétraitement inclus dans le pipeline - -blocks despike tshift align tlrc volreg blur mask scale regress \ - # Option de déspike - -despike_new yes \ - # Spécification de la base TLRC - -tlrc_base MNI152_T1_2009c+tlrc \ - # Specify blur size - -blur_size 6.0 \ - # Options d'alignement - -align_opts_aea \ - # Déplacement géant - -giant_move \ - # Coût de l'alignement - -cost lpc+ZZ \ - # Options for temporal shift - -tshift_opts_ts -quintic \ - # Alignement des volumes EPI sur l'outlier minimal - -volreg_align_to MIN_OUTLIER \ - # Interpolation method for volume registration - -volreg_interp cubic \ - # Alignement EPI vers anatomique - -volreg_align_e2a \ - # Flou dans le masque automatique - -blur_in_automask \ - # Model motion per run - -regress_motion_per_run \ - # Censor motion outliers with framewise displacement greater than 1.5 mm - -regress_censor_motion 1.5 \ - # Specify the regressors and their corresponding labels - -regress_stim_times \ - ${datadir}/${subject}/func/times+gain.1D \ - ${datadir}/${subject}/func/times+loss.1D \ - -regress_stim_labels task nuisance \ - # Modélisation des régresseurs de stimulus - -regress_basis 'BLOCK(4,1)' \ - # Application du masque anatomique - -mask_apply anat \ - # Options supplémentaires pour 3dDeconvolve - -regress_opts_3dD \ - -GOFORIT 8 \ - -jobs 6 \ - -ortvec ${datadir}/${subject}/func/motion_parameters.1D motion_params \ - -allzero_OK \ - # Application des types de mouvement pour la régression - -regress_apply_mot_types demean \ - # Censure des premiers TRs - -regress_censor_first_trs 3 \ - # Estimation des erreurs de flou - # Estimate the blur epochs - -regress_est_blur_epits \ - # Estimate the blur error times - -regress_est_blur_errts \ - # Exécution du pipeline directement après création du script TCSH - - # No gradient distortion correction specified - # No distortion correction specified - # No intensity correction specified - # No intensity normalization specified - # No spatial smoothing specified - # Execute the pipeline script -# -execute - -# # extract beta values -# 3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] -# 3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] - -# # convert BRIK to nii -# 3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc -# 3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc \ No newline at end of file diff --git a/narps_open/pipelines/team_6VV2.firstlevel b/narps_open/pipelines/team_6VV2.firstlevel deleted file mode 100755 index 435d6324..00000000 --- a/narps_open/pipelines/team_6VV2.firstlevel +++ /dev/null @@ -1,107 +0,0 @@ -#!/bin/tcsh - -# created by team 6VV2, reproduced by Narps reproducibility team -# creation date: 22 June 2023 -# read and ran by team_6VV2.py script -# version afni used by the team : AFNI Version 19.0.01 Tiberius -# version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus -# Last update: June 2023 - - -# exemple run: -# In a terminal, path /home/jlefortb/narps_open_pipelines, run: -# tcsh /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/, sub-001, /home/jlefortb/narps_open_pipelines/data/original/ds001734/ - - - - -# Store arguments (directory where to store results, subjects list, directory where data are stored) -set expdir="$1" -set subject="$2" -set datadir="$3" - - -afni_proc.py \ - -script ${expdir}/proc.${subject}.block \ - -scr_overwrite \ - -subj_id ${subject} \ - -out_dir ${expdir}/${subject}.results.block \ - -dsets ${datadir}/${subject}/func/${subject}_task-MGT_run-01_bold.nii.gz \ - ${datadir}/${subject}/func/${subject}_task-MGT_run-02_bold.nii.gz \ - ${datadir}/${subject}/func/${subject}_task-MGT_run-03_bold.nii.gz \ - ${datadir}/${subject}/func/${subject}_task-MGT_run-04_bold.nii.gz \ - -copy_anat ${datadir}/${subject}/anat/${subject}_T1w.nii.gz \ - -anat_has_skull yes \ - -blocks despike tshift align tlrc volreg blur mask scale regress \ - -despike_new yes \ - -tlrc_base MNI152_T1_2009c+tlrc \ - -tlrc_NL_warp \ - -align_opts_aea \ - -giant_move \ - -cost lpc+ZZ \ - -volreg_align_to MIN_OUTLIER \ - -volreg_tlrc_warp \ - -volreg_align_e2a \ - -blur_in_automask \ - -regress_stim_times \ - ${datadir}/${subject}/func/times+gain.1D \ - ${datadir}/${subject}/func/times+loss.1D \ - -regress_stim_types AM2 \ - -regress_stim_labels \ - GAIN \ - LOSS \ - -regress_basis \ - 'BLOCK(4,1)' \ - -mask_apply anat \ - -regress_motion_per_run \ - -test_stim_files no \ - -regress_opts_3dD \ - -GOFORIT 8 \ - -jobs 6 \ - -regress_censor_motion 0.2 \ - -regress_apply_mot_types demean deriv \ - -regress_censor_first_trs 3 \ - -regress_est_blur_errts \ - -execute - - -# # extract beta values -# 3dbucket -prefix GAIN ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[3] -# 3dbucket -prefix LOSS ${expdir}/${subject}.results.block/stats.sub-001+tlrc.BRIK[8] - -# # convert BRIK to nii -# 3dAFNItoNIFTI -prefix GAIN ${subject}_GAIN+tlrc -# 3dAFNItoNIFTI -prefix LOSS ${subject}_LOSS+tlrc - - - -# run this file with "tcsh 6VV2_afni_proc.simple" - -# create 1D stimuli file : -# import pandas as pd - -# df_run1 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-01_events.tsv", sep="\t") -# df_run1 = df_run1[["onset", "gain", "loss"]].T -# df_run2 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-02_events.tsv", sep="\t") -# df_run2 = df_run2[["onset", "gain", "loss"]].T -# df_run3 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-03_events.tsv", sep="\t") -# df_run3 = df_run3[["onset", "gain", "loss"]].T -# df_run4 = pd.read_csv("/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/sub-001_task-MGT_run-04_events.tsv", sep="\t") -# df_run4 = df_run4[["onset", "gain", "loss"]].T - -# df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) -# df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] -# df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] -# df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] -# df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] -# df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) -# df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] -# df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] -# df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] -# df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] - - -# df_gain.to_csv('/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/times+gain.1D', -# sep='\t', index=False, header=False) -# df_loss.to_csv('/home/jlefortb/narps_open_pipelines/data/original/ds001734/sub-001/func/times+loss.1D', -# sep='\t', index=False, header=False) diff --git a/narps_open/pipelines/team_6VV2_wip.py b/narps_open/pipelines/team_6VV2_wip.py deleted file mode 100644 index 201290af..00000000 --- a/narps_open/pipelines/team_6VV2_wip.py +++ /dev/null @@ -1,231 +0,0 @@ -''' -created by team 6VV2, reproduced by Narps reproducibility team -creation date: 22 June 2023 -needs script "team_6VV2.firstlevel" and "team_6VV2.secondlevel" -the team : AFNI Version 19.0.01 Tiberius -version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus -Participants not included 016, 018, 030, 088, 089, 100 -Last update: June 2023 -''' - -from nipype import Node, Function, Workflow,IdentityInterface -import subprocess -from nipype.interfaces.io import SelectFiles, DataSink -from os.path import abspath -from os.path import join as opj -import os -import pathlib -from glob import glob -from nilearn import plotting -import matplotlib.pyplot as plt -from nilearn import image -import pandas as pd - -######################################################################## -################## FIRST LEVEL ANALYSIS FOR TEAM 6VV2 ################## -######################################################################## - -# define environment for first level analysis -data_dir = "/home/jlefortb/narps_open_pipelines/data/original/ds001734/" -results_dir = "/home/jlefortb/narps_open_pipelines/data/results/derived/team_6VV2_afni/firstlevel/" - -path = pathlib.Path(results_dir) -path.mkdir(parents=True, exist_ok=True) - - - -# define subject ids -dir_list = os.listdir(data_dir) -# Subject list (to which we will do the analysis) -subject_list = [] -for dirs in dir_list: - if dirs[0:3] == 'sub': - subject_list.append(dirs[-3:]) - - - - -# Infosource Node - To iterate on subjects + get directoris paths -infosource = Node(interface=IdentityInterface(fields = ['subject_id', 'data_dir', 'results_dir'], - data_dir = data_dir, - results_dir = results_dir), - name = 'infosource') - -infosource.iterables = [('subject_id', subject_list)] - - -templates = {'command': abspath('narps_open/pipelines/team_6VV2.firstlevel')} -# Create SelectFiles node -files = Node(SelectFiles(templates), - name='files') -# Location of the dataset folder -files.inputs.base_directory = '.' - -# create stimuli file the afni way -def create_stimuli_file(subject, data_dir): - # create 1D stimuli file : - import pandas as pd - from os.path import join as opj - df_run1 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-01_events.tsv".format(subject, subject)), sep="\t") - df_run1 = df_run1[["onset", "gain", "loss"]].T - df_run2 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-02_events.tsv".format(subject, subject)), sep="\t") - df_run2 = df_run2[["onset", "gain", "loss"]].T - df_run3 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-03_events.tsv".format(subject, subject)), sep="\t") - df_run3 = df_run3[["onset", "gain", "loss"]].T - df_run4 = pd.read_csv(opj(data_dir, "sub-{}/func/sub-{}_task-MGT_run-04_events.tsv".format(subject, subject)), sep="\t") - df_run4 = df_run4[["onset", "gain", "loss"]].T - - df_gain = pd.DataFrame(index=range(0,4), columns=range(0,64)) - df_gain.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['gain']) for col in range(0, 64)] - df_gain.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['gain']) for col in range(0, 64)] - df_gain.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['gain']) for col in range(0, 64)] - df_gain.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['gain']) for col in range(0, 64)] - df_loss = pd.DataFrame(index=range(0,4), columns=range(0,64)) - df_loss.loc[0] = ["{}*{}".format(df_run1[col].loc['onset'], df_run1[col].loc['loss']) for col in range(0, 64)] - df_loss.loc[1] = ["{}*{}".format(df_run2[col].loc['onset'], df_run2[col].loc['loss']) for col in range(0, 64)] - df_loss.loc[2] = ["{}*{}".format(df_run3[col].loc['onset'], df_run3[col].loc['loss']) for col in range(0, 64)] - df_loss.loc[3] = ["{}*{}".format(df_run4[col].loc['onset'], df_run4[col].loc['loss']) for col in range(0, 64)] - - df_gain.to_csv(opj(data_dir, "sub-{}/func/times+gain.1D".format(subject)), - sep='\t', index=False, header=False) - df_loss.to_csv(opj(data_dir, "sub-{}/func/times+loss.1D".format(subject)), - sep='\t', index=False, header=False) - print("Done") - -create_stimuli = Node(Function(input_names=["subject", "data_dir"], - output_names=["Stimuli"], - function=create_stimuli_file), - name='create_stimuli') - - -# launch afni bash script -def run(command, results_dir, subject, data_dir): - import subprocess - subject= "sub-{}".format(subject) - subprocess.run([command, results_dir, subject, data_dir]) - print("Done") - -afni_proc = Node(Function(input_names=["command", "results_dir", "subject", "data_dir"], - output_names=["Adni_1stLevel"], - function=run), - name='afni_proc') - - -####### build workflow -wf_run = Workflow(base_dir = results_dir, name="Afni_proc_through_nipype") -wf_run.base_dir = '.' -wf_run.connect([(infosource, create_stimuli, [('subject_id', 'subject')]), - (infosource, create_stimuli, [("data_dir", "data_dir")]), - (infosource, afni_proc, [('subject_id', 'subject')]), - (infosource, afni_proc, [("results_dir", "results_dir")]), - (infosource, afni_proc, [("data_dir", "data_dir")]), - (files, afni_proc, [("command", "command")]) - ]) -# wf_run.write_graph() -wf_run.run() - -#### -# to do: relaunch sub 1 and launch sub 2, then launch part 2 to check which data are mandatory and which we can delete -# because taking a bunch of space (60G) -#### - -# convert BRIK to nii -command = "3dAFNItoNIFTI" -for Afni_file in glob("/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/*.HEAD"): - file_name = Afni_file.split('/')[-1] - nifti_file_name = file_name[:-5] - results_dir = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/results_as_nifti/" - prefixname = opj(results_dir, nifti_file_name) - subprocess.run([command, "-prefix", prefixname, Afni_file]) - -# visualise nifti -for nifi_file in glob("/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/sub-001.results.block/results_as_nifti/*"): - shape = image.load_img(nifi_file).shape - print("shape: ", shape) - if len(shape) > 3: - plotting.plot_stat_map(image.index_img(nifi_file, 0), annotate=False, title=nifi_file.split('/')[-1] + " ind 0", colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') - plotting.plot_stat_map(image.index_img(nifi_file, 30), annotate=False, title=nifi_file.split('/')[-1] + " ind 30", colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') - plotting.plot_stat_map(image.index_img(nifi_file, 60), annotate=False, title=nifi_file.split('/')[-1] + " ind 60", colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') - plt.show() - else: - plotting.plot_stat_map(nifi_file, annotate=False, title=nifi_file.split('/')[-1], colorbar=True, cut_coords=(-24, -10, 4, 18, 32, 52, 64), display_mode='z', cmap='coolwarm') - plt.show() - - -######################################################################## -################## SECOND LEVEL ANALYSIS FOR TEAM 6VV2 ################# -######################################################################## - -# define environment for second level analysis -data_dir_firstlevel = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/" -results_dir_second_level = "/home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/secondlevel/" -path = pathlib.Path(results_dir_second_level) -path.mkdir(parents=True, exist_ok=True) - -# Infosource Node - To iterate on subjects + get directoris paths -infosource = Node(interface=IdentityInterface(fields = ['results_dir_second_level'], - results_dir_second_level = results_dir_second_level), - name = 'infosource') - -templates = {'command': abspath('narps_open/pipelines/team_6VV2.secondlevel')} -# Create SelectFiles node -files = Node(SelectFiles(templates), - name='files') -# Location of the dataset folder -files.inputs.base_directory = '.' - - -# create datatable for afni_proc.py script -def create_dataTable(data_dir_firstlevel): - # subject not analyzed by the team, see pipelines information for more details - not_included = ["016","018","030","088","089","100"] - df_participant = pd.read_csv("data/original/ds001734/participants.tsv", sep="\t") - # replace equalRange and equalIndifference with range and indifference - df_participant["group"] = [i[5:].lower() for i in df_participant["group"].values] - df_participant["participant_id"] = [i[-3:] for i in df_participant["participant_id"].values] - df = pd.DataFrame(columns=["Subj", "cond", "group", "InputFile"]) - for sub in df_participant["participant_id"].values: - if sub in not_included: - continue - size_df = len(df) - sub_group = df_participant["group"][df_participant["participant_id"]==sub].values[0] - df.loc[size_df] = [sub, "GAIN", sub_group, "{}sub-{}/sub-{}_GAIN.nii".format(data_dir_firstlevel, sub, sub)] - size_df = len(df) - df.loc[size_df] = [sub, "LOSS", sub_group, "{}sub-{}/sub-{}_LOSS.nii".format(data_dir_firstlevel, sub, sub)] - dataTable = df - - """ - Should look like - - Subj cond group InputFile \ - 001 GAIN indiff results/sub-001.results.block/sub-001_GAIN.nii \ - 001 LOSS indiff results/sub-001.results.block/sub-001_LOSS.nii \ - … - 124 GAIN range results/sub-124.results.block/sub-124_GAIN.nii \ - 124 LOSS range results/sub-124.results.block/sub-124_LOSS.nii - - - """ - return dataTable - - -# launch afni bash script -def run_secondlevel(command, results_dir_second_level): - import subprocess - subprocess.run([command, results_dir_second_level]) - print("Done") - -afni_proc = Node(Function(input_names=["command", "results_dir_second_level"], - output_names=["Adni_2ndLevel"], - function=run_secondlevel), - name='afni_proc') - - -####### build workflow -wf_run = Workflow(base_dir = results_dir_second_level, name="Afni_proc_2nd_level_through_nipype") -wf_run.base_dir = '.' -wf_run.connect([(infosource, afni_proc, [("results_dir_second_level", "results_dir_second_level")]), - (files, afni_proc, [("command", "command")]) - ]) -# wf_run.write_graph() -wf_run.run() \ No newline at end of file diff --git a/narps_open/pipelines/team_80GC.firstlevel b/narps_open/pipelines/team_80GC.firstlevel new file mode 100755 index 00000000..a6a431cc --- /dev/null +++ b/narps_open/pipelines/team_80GC.firstlevel @@ -0,0 +1,30 @@ +#!/bin/tcsh + +# created by team 80GC, reproduced by Narps reproducibility team +# creation date: 22 June 2023 +# read and ran by team_6VV2.py script +# version afni used by the team : +# version afni used by the reproducibility team :AFNI Version 23.0.02 Commodus +# Last update: June 2023 + + +# exemple run: +# In a terminal, path /home/jlefortb/narps_open_pipelines, run: +# tcsh /home/jlefortb/narps_open_pipelines/narps_open/pipelines/team_6VV2.firstlevel /home/jlefortb/narps_open_pipelines/data/results/team_6VV2_afni/firstlevel/, sub-001, /home/jlefortb/narps_open_pipelines/data/original/ds001734/ + +# ------------------------------ +# run the regression analysis +3dDeconvolve -input /home/jlefortb/narps_open_pipelines/data/original/ds001734/derivatives/fmriprep/sub-001/func/sub-001_task-MGT_run-01_bold_space-MNI152NLin2009cAsym_preproc.nii.gz \ + \ + -polort 4 -float \ + -num_stimts 2 \ + -stim_times_AM2 1 stimuli/times+gain.1D 'BLOCK(4,1)' \ + -stim_label 1 GAIN \ + -stim_times_AM2 2 stimuli/times+loss.1D 'BLOCK(4,1)' \ + -stim_label 2 LOSS \ + -GOFORIT 8 \ + -jobs 6 \ + -fout -tout \ + -fitts fitts.$subj \ + -errts errts.${subj} \ + -bucket stats.$subj diff --git a/narps_open/pipelines/team_6VV2.secondlevel b/narps_open/pipelines/team_80GC.secondlevel similarity index 100% rename from narps_open/pipelines/team_6VV2.secondlevel rename to narps_open/pipelines/team_80GC.secondlevel