[O21U] Pipeline reproduction (FSL - deriv)

[bclenet]

Softwares

FSL 5.0.9

Input data

derivatives (fMRIprep)

Additional context

• brain_extraction : The preprocessed BOLD data from fmriprep output was multiplied by the brain mask (also provided with the fmriprep data).

• spatial_smoothing : FSL 5.0.9 spatial smoothing default: 5mm FWHM

List of tasks

Please tick the boxes below once the corresponding task is finished. 👍

• 👌 A maintainer of the project approved the issue, by assigning a 🏁status: ready for dev label to it.
• 🌳 Create a branch on your fork to start the reproduction.
• 🌅 Create a file team_{team_id}.py inside the narps_open/pipelines/ directory. You can use a file inside narps_open/pipelines/templates as a template if needed.
• 📥 Create a pull request as soon as you completed the previous task.
• 🧠 Write the code for the pipeline, using Nipype and the file architecture described in docs/pipelines.md.
• 📘 Make sure your code is documented enough.
• 🐍 Make sure your code is explicit and conforms with PEP8.
• 🔬 Create tests for your pipeline. You can use files in tests/pipelines/test_team_* as examples.
• 🔬 Make sure your code passes all the tests you created (see docs/testing.md).

[bclenet]

PR #202 gives the following correlation results : [0.48, 0.32, 0.48, 0.32, 0.23, 0.27, 0.23, 0.27, -0.08] with 4 subject, to be tested on 108.

[bclenet]

Correlation results : [0.78, 0.91, 0.78, 0.91, 0.92, 0.84, 0.92, 0.84, 0.01] with 108 subjects.
Correlation results : [0.79, 0.91, 0.79, 0.91, 0.92, 0.85, 0.92, 0.85, -0.07] with 104 subjects (without sub-013, sub-025, sub-056, sub-030, originally excluded by the team).

[bclenet]

Closed with merged PR #202