From bd835cab0f8460cc9edc0f7cd262f7db68f9a137 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Boris=20Cl=C3=A9net?= Date: Tue, 9 Apr 2024 15:01:10 +0200 Subject: [PATCH] Contrasts naming --- narps_open/pipelines/team_3TR7.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/narps_open/pipelines/team_3TR7.py b/narps_open/pipelines/team_3TR7.py index fefd2863..85043a19 100644 --- a/narps_open/pipelines/team_3TR7.py +++ b/narps_open/pipelines/team_3TR7.py @@ -442,7 +442,7 @@ def get_group_level_analysis_group_comparison(self): # Select files from subject level analysis templates = { 'contrasts': join(self.directories.output_dir, - 'subject_level', '_subject_id_*', 'con_{contrast_id}.nii'), + 'subject_level', '_subject_id_*', 'scon_{contrast_id}.nii'), #'mask': join('derivatives/fmriprep/gr_mask_tmax.nii') } select_files = Node(SelectFiles(templates), name = 'select_files') @@ -523,6 +523,7 @@ def get_group_level_analysis_group_comparison(self): threshold.inputs.force_activation = False threshold.inputs.height_threshold = 0.05 threshold.inputs.contrast_index = 1 + threshold.inputs.extent_threshold = 5 # Create the group level workflow group_level_analysis = Workflow(