From 7dfb2e6f03989c55123703fa2708548ccd000826 Mon Sep 17 00:00:00 2001 From: Youenn Merel Date: Wed, 18 Dec 2024 15:08:15 +0100 Subject: [PATCH] [narps_open_pipelines#220][94GU] correct code spells --- narps_open/pipelines/team_94GU.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/narps_open/pipelines/team_94GU.py b/narps_open/pipelines/team_94GU.py index a92f49d0..a34cb5ee 100644 --- a/narps_open/pipelines/team_94GU.py +++ b/narps_open/pipelines/team_94GU.py @@ -61,7 +61,7 @@ def get_preprocessing(self): """ Preprocessing workflow - 1) Fieldmap distorsion calculation; + 1) Fieldmap distortion calculation; 2) functional Realignment & unwarp & phase correction (subject motion estimation and correction); 3) functional Indirect Segmentation & Normalization ( coregister functional/structural; @@ -100,7 +100,7 @@ def get_preprocessing(self): preprocessing.connect(select_files, 'magnitude', fieldmap_infos, 'magnitude_files') # Unzip magnitude file - # FIELDMAP DISTORSION CALCULATION + # FIELDMAP DISTORTION CALCULATION # inputs : echo_times + magnitude_file + phase_diff + func fieldmap = self.get_fieldmap() preprocessing.connect(fieldmap_infos, 'echo_times', fieldmap, 'echo_times') @@ -194,7 +194,7 @@ def extract_fieldmap_infos(info_file, magnitude_files): def get_fieldmap(self): """ - FieldMap() node for fieldmap distorsion calculation; + FieldMap() node for fieldmap distortion calculation; """ # FieldMap Node - @@ -205,7 +205,7 @@ def get_fieldmap(self): def get_motion_correction(self) -> Node: """ - RealignUnwarp() node for func motion correction, distorsion correction + RealignUnwarp() node for func motion correction, distortion correction Motion correction was performed in SPM12 (realign and unwarp and the fielmap toolbox). Default parameters were used: @@ -248,7 +248,7 @@ def get_coregistration(self) -> Node: Coregister() node for anat/func coregistration Coregistration was performed in SPM12 (coregister: estimate and reslice). Type of - transformation: rigid body model. Cost function = mutual infrormation. Interpolation + transformation: rigid body model. Cost function = mutual information. Interpolation method = B-spline. """ node = Node(interface=Coregister(), name="coregistration")