From 5ecd9f6751823b97656a013584ae6b5bba005676 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sat, 16 Sep 2023 15:59:20 -0400 Subject: [PATCH] fix typo --- Dockerfile | 4 ++-- makefile | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/Dockerfile b/Dockerfile index ecb64729..88b3ad7d 100644 --- a/Dockerfile +++ b/Dockerfile @@ -121,7 +121,7 @@ RUN yum install -y -q \ && bash -c "source activate base \ && python -m pip install --no-cache-dir \ "traits==6.3.0" \ - "jupyterlab-4.0.6" \ + "jupyterlab==4.0.6" \ "graphviz-0.20.1" \ "nipype==1.8.6" \ "scikit-image==0.21.0" \ @@ -220,7 +220,7 @@ RUN printf '{ \ { \ "name": "run", \ "kwds": { \ - "command": "yum install -y -q \\\\\\n bzip2 \\\\\\n curl\\nyum clean all\\nrm -rf /var/cache/yum/*\\n# Install dependencies.\\nexport PATH=\\"/opt/miniconda-latest/bin:$PATH\\"\\necho \\"Downloading Miniconda installer ...\\"\\nconda_installer=\\"/tmp/miniconda.sh\\"\\ncurl -fsSL -o \\"$conda_installer\\" https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh\\nbash \\"$conda_installer\\" -b -p /opt/miniconda-latest\\nrm -f \\"$conda_installer\\"\\nconda update -yq -nbase conda\\nconda install -yq -nbase conda-libmamba-solver\\nconda config --set solver libmamba\\n# Prefer packages in conda-forge\\nconda config --system --prepend channels conda-forge\\n# Packages in lower-priority channels not considered if a package with the same\\n# name exists in a higher priority channel. Can dramatically speed up installations.\\n# Conda recommends this as a default\\n# https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-channels.html\\nconda config --set channel_priority strict\\nconda config --system --set auto_update_conda false\\nconda config --system --set show_channel_urls true\\n# Enable `conda activate`\\nconda init bash\\nconda install -y --name base \\\\\\n \\"python=3.10\\" \\\\\\n \\"pip=23.2.1\\"\\nbash -c \\"source activate base\\n python -m pip install --no-cache-dir \\\\\\n \\"traits==6.3.0\\" \\\\\\n \\"jupyterlab-4.0.6\\" \\\\\\n \\"graphviz-0.20.1\\" \\\\\\n \\"nipype==1.8.6\\" \\\\\\n \\"scikit-image==0.21.0\\" \\\\\\n \\"matplotlib==3.8.0\\" \\\\\\n \\"nilearn==0.10.1\\"\\"\\n# Clean up\\nsync && conda clean --all --yes && sync\\nrm -rf ~/.cache/pip/*" \ + "command": "yum install -y -q \\\\\\n bzip2 \\\\\\n curl\\nyum clean all\\nrm -rf /var/cache/yum/*\\n# Install dependencies.\\nexport PATH=\\"/opt/miniconda-latest/bin:$PATH\\"\\necho \\"Downloading Miniconda installer ...\\"\\nconda_installer=\\"/tmp/miniconda.sh\\"\\ncurl -fsSL -o \\"$conda_installer\\" https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh\\nbash \\"$conda_installer\\" -b -p /opt/miniconda-latest\\nrm -f \\"$conda_installer\\"\\nconda update -yq -nbase conda\\nconda install -yq -nbase conda-libmamba-solver\\nconda config --set solver libmamba\\n# Prefer packages in conda-forge\\nconda config --system --prepend channels conda-forge\\n# Packages in lower-priority channels not considered if a package with the same\\n# name exists in a higher priority channel. Can dramatically speed up installations.\\n# Conda recommends this as a default\\n# https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-channels.html\\nconda config --set channel_priority strict\\nconda config --system --set auto_update_conda false\\nconda config --system --set show_channel_urls true\\n# Enable `conda activate`\\nconda init bash\\nconda install -y --name base \\\\\\n \\"python=3.10\\" \\\\\\n \\"pip=23.2.1\\"\\nbash -c \\"source activate base\\n python -m pip install --no-cache-dir \\\\\\n \\"traits==6.3.0\\" \\\\\\n \\"jupyterlab==4.0.6\\" \\\\\\n \\"graphviz-0.20.1\\" \\\\\\n \\"nipype==1.8.6\\" \\\\\\n \\"scikit-image==0.21.0\\" \\\\\\n \\"matplotlib==3.8.0\\" \\\\\\n \\"nilearn==0.10.1\\"\\"\\n# Clean up\\nsync && conda clean --all --yes && sync\\nrm -rf ~/.cache/pip/*" \ } \ }, \ { \ diff --git a/makefile b/makefile index 9750b4d7..a39e92bf 100644 --- a/makefile +++ b/makefile @@ -11,7 +11,7 @@ Dockerfile: --miniconda method=binaries \ version=latest conda_install="python=3.10 pip=23.2.1" \ - pip_install="traits==6.3.0 jupyterlab-4.0.6 graphviz-0.20.1 nipype==1.8.6 scikit-image==0.21.0 matplotlib==3.8.0 nilearn==0.10.1" \ + pip_install="traits==6.3.0 jupyterlab==4.0.6 graphviz-0.20.1 nipype==1.8.6 scikit-image==0.21.0 matplotlib==3.8.0 nilearn==0.10.1" \ --run 'mkdir -p ~/.jupyter && echo c.NotebookApp.ip = \"0.0.0.0\" > ~/.jupyter/jupyter_notebook_config.py' > Dockerfile Dockerfile_mamba: @@ -26,5 +26,5 @@ Dockerfile_mamba: version=latest \ mamba=true \ conda_install="python=3.10 pip=23.2.1" \ - pip_install="traits==6.3.0 jupyterlab-4.0.6 graphviz-0.20.1 nipype==1.8.6 scikit-image==0.21.0 matplotlib==3.8.0 nilearn==0.10.1" \ + pip_install="traits==6.3.0 jupyterlab==4.0.6 graphviz-0.20.1 nipype==1.8.6 scikit-image==0.21.0 matplotlib==3.8.0 nilearn==0.10.1" \ --run 'mkdir -p ~/.jupyter && echo c.NotebookApp.ip = \"0.0.0.0\" > ~/.jupyter/jupyter_notebook_config.py' > Dockerfile \ No newline at end of file