From 4ed8f3bbd67bdebd0159ef5ce85cfc2cdb9d0440 Mon Sep 17 00:00:00 2001 From: Andrew Severin Date: Fri, 16 Sep 2016 19:06:29 -0500 Subject: [PATCH] added as ORG choice so that you don't have to modify the script, it can be run as runBUSCO_genome.sh genome.fasta metazoa --- runBUSCO_genome.sh | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/runBUSCO_genome.sh b/runBUSCO_genome.sh index 00b88a9..12d9aee 100755 --- a/runBUSCO_genome.sh +++ b/runBUSCO_genome.sh @@ -11,7 +11,7 @@ ##################################### # # -ORG=arthropoda +#ORG=arthropoda #ORG=bacteria #ORG=eukaryota #ORG=fungi @@ -25,6 +25,7 @@ ORG=arthropoda module use /shared/software/GIF/modules module load busco/1.2 genome="$1" +ORG="$2" outname=$(basename ${genome%.*}) python3 ${BUSCO_HOME}/busco.py \ -o ${outname} \