Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Extract table metadata without Pandas support #5

Open
djcomlab opened this issue Apr 24, 2018 · 2 comments
Open

Extract table metadata without Pandas support #5

djcomlab opened this issue Apr 24, 2018 · 2 comments
Assignees

Comments

@djcomlab
Copy link
Member

Right now you can't extract table metadata without using Pandas. In order to at least get something out, we could implement a very lazy loader that only extracts data files lists and factor values to get some summary data from the tables without having to do a full load into memory of the experimental graphs.

@djcomlab djcomlab changed the title Extracting table metadata without Pandas support Extract table metadata without Pandas support Apr 24, 2018
@djcomlab
Copy link
Member Author

This is to enable extra metadata to be loaded from within the Galaxy ISA-Tab datatype, as the Galaxy devs don't want to add Pandas to the Galaxy core requirements.

@djcomlab djcomlab self-assigned this Apr 26, 2018
@djcomlab
Copy link
Member Author

Data files and materials now available via 'Lazy' parsers in latest release.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant