diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/df_corr_lh_use_corrcoeff_False.csv b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/df_corr_lh_use_corrcoeff_False.csv index 2ac13ea..5db2e08 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/df_corr_lh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/df_corr_lh_use_corrcoeff_False.csv @@ -1,18 +1,20 @@ -1.0,0.37852439146470446 -1.25,0.3804757087593214 -1.5,0.38630837456855754 -1.6,0.38631051934979166 -1.7,0.3874623263771279 -1.8,0.3897792473786673 -1.9,0.3924490934480598 -2.0,0.3961643189951101 -2.1,0.39696338199868014 -2.2,0.3998177566052772 -2.3,0.3970065713354819 -2.4,0.4007763963708312 -2.5,0.47648754248304137 -2.6,0.5045452150233295 -2.7,0.47039141945036284 -2.8,0.4614919959531759 -2.9,0.48765515196160636 -3.0,0.4613845539827884 +,0 +0.0,0.3676413970528433 +1.0,0.3778662476263807 +1.25,0.3805768365892369 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index a7e3b54..4a9515d 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/df_corr_rh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/df_corr_rh_use_corrcoeff_False.csv @@ -1,18 +1,20 @@ -1.0,0.37910003755845234 -1.25,0.3811602571227452 -1.5,0.3870277507925268 -1.6,0.38704221104856323 -1.7,0.3883118962551105 -1.8,0.39084978668583986 -1.9,0.39352145186634885 -2.0,0.39726635291136725 -2.1,0.39830933000204605 -2.2,0.4013710904219192 -2.3,0.3985151394137298 -2.4,0.40232468345590816 -2.5,0.4600417015949663 -2.6,0.48429298405541016 -2.7,0.45791015951472513 -2.8,0.44526481218769004 -2.9,0.4741849521095216 -3.0,0.4499906342986976 +,0 +0.0,0.36760952668212055 +1.0,0.37848326714420544 +1.25,0.3811347110503173 +1.5,0.38566323878122605 +1.6,0.38935629119931703 +1.7,0.3906644483148104 +1.8,0.39289275841229737 +1.9,0.39559339767715623 +2.0,0.39547966574274046 +2.1,0.3966469943754876 +2.2,0.4013296281456854 +2.3,0.4024804495206718 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a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_lvr.npy b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_lvr.npy index 2bdf39e..49502c4 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_lvr.npy and b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_lvr.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_rates.npy b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_rates.npy index 3f977ab..ef1f953 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_rates.npy and b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/exp_rates.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/ks_cv_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/ks_cv_arr.json index bf5d0f7..f75d9a8 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/ks_cv_arr.json +++ b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/ks_cv_arr.json @@ -1 +1 @@ -{"2.8": 0.9719962957568644, "2.4": 0.46450854257172614, "2.5": 0.9556496683227564, "2.7": 0.946872245334599, "1.9": 0.46815820801007535, "1.7": 0.48069702926593927, "1.8": 0.46191494178452197, "1.0": 0.4501737392841758, "1.25": 0.4740664756229347, "2.6": 0.9409908793613764, "2.9": 0.7767835976658732, "1.6": 0.4696207682998328, "2.0": 0.45115991871063144, "2.2": 0.4767605770314658, "3.0": 0.7339998240767441, "2.3": 0.4789586827167396, "2.1": 0.4639137922348602, "1.5": 0.465403405496982} \ No newline at end of file +{"0.0": 0.4671083371746252, "3.0": 0.7448234388020194, "1.6": 0.48809572532679857, "2.5": 0.8996426237674815, "1.5": 0.46137615462801307, "1.25": 0.47587893065959586, "1.0": 0.4565709424274531, "1.9": 0.46969214259162806, "2.6": 0.9024449153392372, "1.7": 0.4628912505879399, "1.8": 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a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/simulated_fc_bestfit.csv b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/simulated_fc_bestfit.csv index 301b7a1..67a8b3e 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/simulated_fc_bestfit.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/simulated_fc_bestfit.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal -bankssts,1.0,-0.0773419099020308,0.2827940527263608,0.08742874738021829,-0.0344091643737308,0.20311788891382124,0.21750012497057938,0.40075134391615286,0.5096844856355413,0.40216640873015214,-0.03289527329929587,0.17745515095956393,0.2720002772219418,0.08010276249519502,0.23327523332168854,0.769442439845299,0.40127573054209964,0.05910823852824639,0.3736354319341176,0.3345998313579713,0.4194831078360225,0.08370304985951028,0.2003712773226964,-0.013402753630922597,0.13857534509705313,0.030092488395437576,-0.08221834137269439,0.3552088564886358,0.26269687912242795,0.3967266487869462,0.8099608158398193,0.42043327599159885,0.3315158455668489,0.6601157033113376 -caudalanteriorcingulate,-0.0773419099020308,1.0,-0.092451534748803,-0.05539029920492795,0.9284451257990094,-0.0676186687967414,-0.04614759873309118,-0.11144930818898241,-0.07559208969907431,-0.06527414055772783,0.7333701615355541,-0.09744655165573209,-0.06059481771202591,-0.02412273313953262,-0.0075953456293324575,-0.07928243870200885,-0.2015518543648373,0.4707970503729332,-0.06598845423283717,-0.07585030350483161,-0.05431566419167564,-0.05081203466102228,-0.09568505439076565,0.8662908038706348,-0.09350201295023974,0.4746307544315447,0.9635609557676746,-0.14383274372517096,0.4417637866919778,0.036392367784257,-0.08769134838460593,-0.10194428733242358,0.009323280349537631,-0.08129903073594955 -caudalmiddlefrontal,0.2827940527263608,-0.092451534748803,1.0,0.038854110002254284,-0.07719366839679574,0.34907274752728285,0.11644375660594834,0.13132769842255315,0.31594104677412854,0.2889284815058137,-0.016694982094447763,0.09950496762369472,0.14698935107828348,0.03923670547666861,0.1638569381715909,0.32545047634196234,0.3368728928616629,-0.004235202566934394,0.8315014081251723,0.20623018153153289,0.319046753412197,0.05342670826516699,0.3000223049961488,-0.018843476426568175,0.6002369240683284,-0.08754954138803282,-0.09639241984085753,0.5864340663334077,0.6230913923750083,0.08118541538007652,0.27257774888457087,0.3391013015009018,0.20346946308028416,0.13431271183763693 -cuneus,0.08742874738021829,-0.05539029920492795,0.038854110002254284,1.0,0.07098810164889993,0.10981166036761832,0.7134931072017028,0.13729359088295714,0.26063545797589566,0.11753859562138295,0.05868381184263922,0.9076397622779118,0.30671443803792986,0.9221978207751867,0.085433969572164,0.1813795666558824,0.3345036397268151,0.5834060313185848,0.04838819162375322,0.3073653406055953,0.10927176839457625,0.9248626247869824,0.05401987556825497,0.03070842740953816,0.010784739220331567,0.16739190790222375,-0.05735942429181425,0.3918408871556162,0.13011819071200795,0.3520334541667935,0.14085066732748383,0.028911967726433143,0.1894488881828373,0.07948172734845248 -entorhinal,-0.0344091643737308,0.9284451257990094,-0.07719366839679574,0.07098810164889993,1.0,0.007114957761146729,0.16914839067152082,-0.08000212223952641,-0.001084909527358153,0.026360066522726284,0.7211753670824829,0.06597430611861343,0.08650562153427434,0.11935058926225092,0.06914887760406703,-0.026546773734101425,-0.14726653257235678,0.6493852773749497,-0.05622503824863629,0.059846792286126355,0.03216641556634051,0.07846137267034103,-0.06498501385002958,0.8005404228552879,-0.08509579459220537,0.4025660444387977,0.91666857387861,-0.01634776639621023,0.4327642575033362,0.08159177911342542,-0.013100703557678804,-0.07685807481720949,0.11775053671561858,-0.02326576338601376 -frontalpole,0.20311788891382124,-0.0676186687967414,0.34907274752728285,0.10981166036761832,0.007114957761146729,1.0,0.25372840323425055,0.1524232467761684,0.3672922758011444,0.6433859554909606,-0.02850362351064524,0.19247585600778352,0.8122802563844329,0.10431658817350307,0.8843466532884456,0.3355962531926874,0.2531826636050648,0.10314178991725938,0.42338374311773774,0.8265264008981253,0.8168734643096232,0.10752053372743067,0.05695156481241734,-0.0051886522280846815,0.16314121064133189,0.035857785831638934,-0.016720289300032425,0.6930960981538516,0.4677441044308976,0.1735075652657465,0.4332194083613757,0.11713351621331985,0.7933452692862335,0.1563196970026544 -fusiform,0.21750012497057938,-0.04614759873309118,0.11644375660594834,0.7134931072017028,0.16914839067152082,0.25372840323425055,1.0,0.22041451217026822,0.4642354105308031,0.2676006078064573,0.06073758358116918,0.8511810068455901,0.49368781019481145,0.7954757453000799,0.2124662006658063,0.3559855160318193,0.39725337142078043,0.8045152218841131,0.10796078780673336,0.49479901042126206,0.26362616984552584,0.7227534883157002,0.08656724724402454,0.036528387794853324,0.027419355471525013,0.14397481928046232,-0.05663507612537738,0.5889215967646171,0.23218403513794533,0.400195912571661,0.3026682972419371,0.10274213482056231,0.36882279494581954,0.16403857419430304 -inferiorparietal,0.40075134391615286,-0.11144930818898241,0.13132769842255315,0.13729359088295714,-0.08000212223952641,0.1524232467761684,0.22041451217026822,1.0,0.4237438866750318,0.13629537744067477,-0.04000300512694477,0.25343317992230197,0.17504156943223867,0.11366419328800734,0.14404804584728126,0.5237378257079623,0.19999997217386428,0.043791306637436,0.27258921948200676,0.31995720760412477,0.269955764185772,0.11655832593552595,-0.10386852842705666,-0.0678741036386936,-0.10430861548813913,0.19573797761564865,-0.10156526573677901,0.40999061939916437,0.216385471228037,0.5058078686552236,0.34799955087213874,0.028442043280495353,0.1495598276638025,0.21328991825589935 -inferiortemporal,0.5096844856355413,-0.07559208969907431,0.31594104677412854,0.26063545797589566,-0.001084909527358153,0.3672922758011444,0.4642354105308031,0.4237438866750318,1.0,0.3788426939079135,0.010059653562706536,0.40573556185846044,0.3800461312280212,0.25433826353733735,0.3415307663968523,0.9007821802418139,0.3343499477639021,0.1856216103337017,0.3282877178217263,0.5102572380622813,0.4434573682609838,0.2352333255630319,0.09563916948541798,0.03170467131420121,0.1017192682802446,0.03277034480054382,-0.08046233993599923,0.5502988340541146,0.3117469638987023,0.30612457883225147,0.512302637816013,0.18189036388731186,0.5865490195537156,0.0968187446582569 -insula,0.40216640873015214,-0.06527414055772783,0.2889284815058137,0.11753859562138295,0.026360066522726284,0.6433859554909606,0.2676006078064573,0.13629537744067477,0.3788426939079135,1.0,-0.01272257869231211,0.20129465239896435,0.7351183108675781,0.11599778754270573,0.6899678385790363,0.4252488452542463,0.41891864261242656,0.12100128422288899,0.27406422873691316,0.7382869264928569,0.818797617177277,0.09633539219540782,0.27361552296895386,0.007857387214317437,0.2522414660119873,0.003397891258931416,-0.02778175724642755,0.4885662789489022,0.3282381581058459,0.24134139686148492,0.6388436757986186,0.3537052416208574,0.721306113063102,0.3464769381410994 -isthmuscingulate,-0.03289527329929587,0.7333701615355541,-0.016694982094447763,0.05868381184263922,0.7211753670824829,-0.02850362351064524,0.06073758358116918,-0.04000300512694477,0.010059653562706536,-0.01272257869231211,1.0,0.04009264875224327,-0.02962564253367488,0.08435976089416677,-0.018012754856057595,-0.004589608482533522,0.030164222600707,0.46863974417832294,-0.03733063209405382,-0.03461282682595342,-0.04158790256684196,0.060850456809244474,0.026897248662121065,0.8532573403314695,0.006689364938636113,0.5403397714325691,0.6782001736444382,-0.012241300424525096,0.4020985045620605,0.14471344881889678,-0.024096545529008424,-0.002443156172657659,-0.0004232672661339165,-0.05752265002092807 -lateraloccipital,0.17745515095956393,-0.09744655165573209,0.09950496762369472,0.9076397622779118,0.06597430611861343,0.19247585600778352,0.8511810068455901,0.25343317992230197,0.40573556185846044,0.20129465239896435,0.04009264875224327,1.0,0.3976553707135738,0.9212848513358073,0.14819370261476147,0.31626299658066875,0.4102433106495678,0.6554360321301481,0.10358840242176759,0.4161064819038808,0.19789194453803188,0.8744688072036468,0.0865557441754621,0.005762783889288984,0.03825230485021122,0.16102356224488068,-0.10185027683915612,0.5256138560569155,0.18951376035171794,0.4219743331603593,0.2447713889284568,0.0739668682514939,0.2787264860226007,0.12757070922264305 -lateralorbitofrontal,0.2720002772219418,-0.06059481771202591,0.14698935107828348,0.30671443803792986,0.08650562153427434,0.8122802563844329,0.49368781019481145,0.17504156943223867,0.3800461312280212,0.7351183108675781,-0.02962564253367488,0.3976553707135738,1.0,0.3214608379902966,0.8939551858230858,0.35074768012424584,0.31370742847407,0.3290524260662681,0.24607020196636809,0.9501247716965624,0.8972258973260255,0.29047840994336843,0.015680284140370065,-0.016191628888754236,0.010513333350137303,0.06983440847162432,0.000387133672799772,0.640866972785131,0.3321936044943631,0.31202316601404917,0.5391260024665319,0.09508671258292394,0.8728143316599267,0.30222922393017204 -lingual,0.08010276249519502,-0.02412273313953262,0.03923670547666861,0.9221978207751867,0.11935058926225092,0.10431658817350307,0.7954757453000799,0.11366419328800734,0.25433826353733735,0.11599778754270573,0.08435976089416677,0.9212848513358073,0.3214608379902966,1.0,0.0721889160600812,0.1671273645155985,0.320358718327711,0.6756143882688282,0.032809396131070444,0.3132595281244158,0.09111863888180596,0.8985521078200969,0.06554317945833782,0.056290467686372914,0.017859326546515845,0.1636578997209973,-0.03324613111681171,0.4072963429103226,0.13280178178703003,0.33097851462369743,0.1294811378562772,0.0386847766555453,0.1824765289432025,0.07530993141330414 -medialorbitofrontal,0.23327523332168854,-0.0075953456293324575,0.1638569381715909,0.085433969572164,0.06914887760406703,0.8843466532884456,0.2124662006658063,0.14404804584728126,0.3415307663968523,0.6899678385790363,-0.018012754856057595,0.14819370261476147,0.8939551858230858,0.0721889160600812,1.0,0.33263065618506915,0.20221545100994884,0.09419383168034576,0.2674349863031084,0.9036901794867479,0.8916056355762695,0.0678990484396105,0.01816066041725926,0.020046582773819727,0.058313416527304596,0.04786490908447874,0.0660394670280156,0.5459923142650617,0.3509251935443372,0.18745071996641638,0.48134762089224004,0.08283331184121404,0.8886542281830858,0.20509553978967837 -middletemporal,0.769442439845299,-0.07928243870200885,0.32545047634196234,0.1813795666558824,-0.026546773734101425,0.3355962531926874,0.3559855160318193,0.5237378257079623,0.9007821802418139,0.4252488452542463,-0.004589608482533522,0.31626299658066875,0.35074768012424584,0.1671273645155985,0.33263065618506915,1.0,0.3802215715247784,0.10183682974375535,0.4055536362264528,0.47465953413183126,0.48101820743494134,0.16309105063725557,0.14001055946813912,0.018690865214625946,0.12638013897969386,0.0534763947705758,-0.08128238973508176,0.5235398253604554,0.33908838343793646,0.3866379416477743,0.7299736406113164,0.28103432006644663,0.5256405346419417,0.3072423194924784 -paracentral,0.40127573054209964,-0.2015518543648373,0.3368728928616629,0.3345036397268151,-0.14726653257235678,0.2531826636050648,0.39725337142078043,0.19999997217386428,0.3343499477639021,0.41891864261242656,0.030164222600707,0.4102433106495678,0.31370742847407,0.320358718327711,0.20221545100994884,0.3802215715247784,1.0,0.22804569275716652,0.24918677272473944,0.33952461836361403,0.33324063495977335,0.3045768801730362,0.3313489832706979,0.11291363874619449,0.270639092545523,0.13483753655797284,-0.24909356318991765,0.4839372654893907,0.3812444815218367,0.4015151518848585,0.4840209641193857,0.37589843077320484,0.2742380135206276,0.31313024073293544 -parahippocampal,0.05910823852824639,0.4707970503729332,-0.004235202566934394,0.5834060313185848,0.6493852773749497,0.10314178991725938,0.8045152218841131,0.043791306637436,0.1856216103337017,0.12100128422288899,0.46863974417832294,0.6554360321301481,0.3290524260662681,0.6756143882688282,0.09419383168034576,0.10183682974375535,0.22804569275716652,1.0,-0.005007785610215199,0.2914138422870375,0.09953563650507428,0.6009895161504222,0.01486969703646086,0.5055192871120784,-0.04617256634958594,0.31953964980969396,0.43325060480918204,0.34663334790204414,0.3609846025500718,0.29610826124618317,0.11540541810293241,0.0009188250779024136,0.20838941213755394,0.08460773087532117 -parsopercularis,0.3736354319341176,-0.06598845423283717,0.8315014081251723,0.04838819162375322,-0.05622503824863629,0.42338374311773774,0.10796078780673336,0.27258921948200676,0.3282877178217263,0.27406422873691316,-0.03733063209405382,0.10358840242176759,0.24607020196636809,0.032809396131070444,0.2674349863031084,0.4055536362264528,0.24918677272473944,-0.005007785610215199,1.0,0.3145957724499797,0.4618682717890764,0.048874978029665846,0.057393752468116,-0.013620583047714852,0.34442844970375047,-0.000635718087103027,-0.05486327386541745,0.639672759365513,0.6747581973324802,0.19504519000082665,0.37806095820502633,0.15040991190394476,0.2936478255800944,0.2189229987234761 -parsorbitalis,0.3345998313579713,-0.07585030350483161,0.20623018153153289,0.3073653406055953,0.059846792286126355,0.8265264008981253,0.49479901042126206,0.31995720760412477,0.5102572380622813,0.7382869264928569,-0.03461282682595342,0.4161064819038808,0.9501247716965624,0.3132595281244158,0.9036901794867479,0.47465953413183126,0.33952461836361403,0.2914138422870375,0.3145957724499797,1.0,0.9121936856429993,0.2864831725726755,0.01037696721889609,-0.016428716710391894,0.020386828542878238,0.07985346059151845,-0.01611627704457572,0.7183381291437402,0.38141007285627915,0.3601588015241075,0.5694092128486048,0.10081196993472846,0.9203977488217878,0.2829025499896155 -parstriangularis,0.4194831078360225,-0.05431566419167564,0.319046753412197,0.10927176839457625,0.03216641556634051,0.8168734643096232,0.26362616984552584,0.269955764185772,0.4434573682609838,0.818797617177277,-0.04158790256684196,0.19789194453803188,0.8972258973260255,0.09111863888180596,0.8916056355762695,0.48101820743494134,0.33324063495977335,0.09953563650507428,0.4618682717890764,0.9121936856429993,1.0,0.08012427458931239,0.02488490673009794,-0.004839909890787538,0.07805858572230923,0.051780238770393526,0.004146147383938524,0.6312383712847291,0.45225599849216086,0.32260912523237534,0.6564932260515818,0.16506240775101624,0.8836805258064919,0.36724847721779996 -pericalcarine,0.08370304985951028,-0.05081203466102228,0.05342670826516699,0.9248626247869824,0.07846137267034103,0.10752053372743067,0.7227534883157002,0.11655832593552595,0.2352333255630319,0.09633539219540782,0.060850456809244474,0.8744688072036468,0.29047840994336843,0.8985521078200969,0.0678990484396105,0.16309105063725557,0.3045768801730362,0.6009895161504222,0.048874978029665846,0.2864831725726755,0.08012427458931239,1.0,0.0699528383790683,0.030661175162668718,0.026988471193679624,0.14951932706837381,-0.05832840267691923,0.39546077063694185,0.12630033785606773,0.3147613653625919,0.12542294588372166,0.03668048738894108,0.1664433807071497,0.07033583685255985 -postcentral,0.2003712773226964,-0.09568505439076565,0.3000223049961488,0.05401987556825497,-0.06498501385002958,0.05695156481241734,0.08656724724402454,-0.10386852842705666,0.09563916948541798,0.27361552296895386,0.026897248662121065,0.0865557441754621,0.015680284140370065,0.06554317945833782,0.01816066041725926,0.14001055946813912,0.3313489832706979,0.01486969703646086,0.057393752468116,0.01037696721889609,0.02488490673009794,0.0699528383790683,1.0,-0.019915243177078778,0.840567008238861,-0.09826136973135445,-0.104732029271976,0.18915435268868344,0.09740934058721948,-0.061998927000523785,0.21440743353926298,0.6483165387230021,0.025621089706225134,0.0737188287356784 -posteriorcingulate,-0.013402753630922597,0.8662908038706348,-0.018843476426568175,0.03070842740953816,0.8005404228552879,-0.0051886522280846815,0.036528387794853324,-0.0678741036386936,0.03170467131420121,0.007857387214317437,0.8532573403314695,0.005762783889288984,-0.016191628888754236,0.056290467686372914,0.020046582773819727,0.018690865214625946,0.11291363874619449,0.5055192871120784,-0.013620583047714852,-0.016428716710391894,-0.004839909890787538,0.030661175162668718,-0.019915243177078778,1.0,-0.026119575400869035,0.5512781218231573,0.7778888273657047,-0.027897300339092015,0.5065836586965482,0.11534614116164674,-0.010908405492258562,-0.023325276688227554,0.050321754448458655,-0.06380967985971352 -precentral,0.13857534509705313,-0.09350201295023974,0.6002369240683284,0.010784739220331567,-0.08509579459220537,0.16314121064133189,0.027419355471525013,-0.10430861548813913,0.1017192682802446,0.2522414660119873,0.006689364938636113,0.03825230485021122,0.010513333350137303,0.017859326546515845,0.058313416527304596,0.12638013897969386,0.270639092545523,-0.04617256634958594,0.34442844970375047,0.020386828542878238,0.07805858572230923,0.026988471193679624,0.840567008238861,-0.026119575400869035,1.0,-0.13095281380521404,-0.09582035592599301,0.3073432930631574,0.299776805489011,-0.11347615790805997,0.16266922984132745,0.5709668499207953,0.03676663185154896,0.023964812339482937 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-superiorparietal,0.3967266487869462,0.036392367784257,0.08118541538007652,0.3520334541667935,0.08159177911342542,0.1735075652657465,0.400195912571661,0.5058078686552236,0.30612457883225147,0.24134139686148492,0.14471344881889678,0.4219743331603593,0.31202316601404917,0.33097851462369743,0.18745071996641638,0.3866379416477743,0.4015151518848585,0.29610826124618317,0.19504519000082665,0.3601588015241075,0.32260912523237534,0.3147613653625919,-0.061998927000523785,0.11534614116164674,-0.11347615790805997,0.4850879783879326,0.03526855959594669,0.4189596598050473,0.3720047080325828,1.0,0.4646127717261228,0.04576809922061683,0.22349701850520193,0.3727293293414299 -superiortemporal,0.8099608158398193,-0.08769134838460593,0.27257774888457087,0.14085066732748383,-0.013100703557678804,0.4332194083613757,0.3026682972419371,0.34799955087213874,0.512302637816013,0.6388436757986186,-0.024096545529008424,0.2447713889284568,0.5391260024665319,0.1294811378562772,0.48134762089224004,0.7299736406113164,0.4840209641193857,0.11540541810293241,0.37806095820502633,0.5694092128486048,0.6564932260515818,0.12542294588372166,0.21440743353926298,-0.010908405492258562,0.16266922984132745,0.09497685534195004,-0.07562600557979457,0.5124811570586634,0.3758754381188536,0.4646127717261228,1.0,0.3810101299631467,0.550769376534983,0.7294125122540189 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a/simulated_data/scaling_experiment_lichtman_chii2_different_seed/simulated_fc_groundstate.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_different_seed/simulated_fc_groundstate.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal 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-medialorbitofrontal,0.004429603110997372,0.009188976551471011,0.008714426167437991,0.005365945037687659,0.0024284401908027417,0.059292704407303,-0.0032502888235543584,0.003726310865434258,-0.005090747495270533,0.04721030690404675,0.02171377606762533,-0.007158306669600971,0.0552075935528043,0.010423740692180862,1.0,0.013752376038437842,0.021138229928916237,-0.01280771048090695,-0.01894278719857269,0.02218554803044017,0.00012112120534049135,0.006708930811224648,-0.008629049837813048,0.011493827552921337,-0.036329940684927585,-0.010548581471569863,0.015634389783862522,-0.0018818554106779682,-0.022383471415866826,-0.007854924366979333,0.0008356700085408259,0.014879327684174994,0.04399702681114514,0.0028235262090408365 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a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/exp_rates.npy and /dev/null differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_cv_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_cv_arr.json deleted file mode 100644 index 1c8432a..0000000 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_cv_arr.json +++ /dev/null @@ -1 +0,0 @@ -{"1.5": 0.4966011191923605, "1.75": 0.494239704155925, "1.25": 0.4978961876269328, "2.0": 0.49469711427718477, "2.75": 0.5141217506098631, "3.0": 0.5121550943795777, "2.5": 0.48458940423112973, "4.0": 0.8945872693822883, "1.0": 0.4843436861331355, "2.25": 0.501119286161553} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_lvr_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_lvr_arr.json deleted file mode 100644 index 9f8a20e..0000000 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_lvr_arr.json +++ /dev/null @@ -1 +0,0 @@ -{"1.5": 0.48860124509420544, "1.75": 0.48294086489556887, "1.25": 0.4912637948799502, "2.0": 0.4959179666223439, "2.75": 0.4853281228419659, "3.0": 0.5054499221296341, "2.5": 0.49922784412490184, "4.0": 0.755468086558721, "1.0": 0.48161098976808425, "2.25": 0.5032755673644842} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_rates_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_rates_arr.json deleted file mode 100644 index 156514a..0000000 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/ks_rates_arr.json +++ /dev/null @@ -1 +0,0 @@ -{"1.5": 0.8091180964076652, "1.75": 0.8061433650891463, "1.25": 0.8123031958712122, "2.0": 0.8078984614383188, "2.75": 0.7963266319271846, "3.0": 0.8028999152399647, "2.5": 0.8074979785223004, "4.0": 0.4537436703225466, "1.0": 0.8090531763154383, "2.25": 0.8061469995199295} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/path_to_chi.json b/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/path_to_chi.json deleted file mode 100644 index 17b4251..0000000 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/path_to_chi.json +++ /dev/null @@ -1 +0,0 @@ -{"1.5": "013292ec8fa6c9230d1c9518b71d19ad", "1.75": "01dde3bb7de102415c2c560fa65f9ee9", "1.25": "51d3f722fcea42fe722804af260521ad", "2.0": "615aa8683a7ed776eafc718065dcbd3d", "2.75": "6f68a4df981d21210c693cf61bc11bfe", "3.0": "938abb40e337c93bbb95087117e324a6", "2.5": "984f627232b71236276f8d5178c3baab", "4.0": "abab9e23cec17ce523088b36d5a4e6d8", "1.0": "ad2f36126638bf99c0418469d0bfebba", "2.25": "d9673c094027e9046fa6413950f32647"} \ No newline at end of file diff --git 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b/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/sim_rates_groundstate.npy deleted file mode 100644 index 9c7bcd9..0000000 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/sim_rates_groundstate.npy and /dev/null differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/simulated_fc_bestfit.csv b/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/simulated_fc_bestfit.csv deleted file mode 100644 index 95bd98c..0000000 --- a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/simulated_fc_bestfit.csv +++ /dev/null @@ -1,35 +0,0 @@ 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-isthmuscingulate,0.010359289280734292,0.06915148497985163,-0.0236983008424443,0.04969349115509961,0.06361869411794822,-0.027560837837206174,0.006153153867971237,-0.02157494443153371,0.005186753358473117,0.029138571167685912,1.0,-0.010581259891672997,0.025957494831127526,0.06788640266994869,0.002478410130813712,0.014235964942338091,0.05573764476413662,0.08468671327193586,-0.023220835365822205,-0.012885993957102968,0.011412624625527211,0.038398495673681476,-0.010726047511455443,0.12454706774691744,-0.013514744986352379,0.12753388051250164,0.028033360040579804,0.028509342798788872,0.010880768822670913,0.0981664729877915,-0.006598590592867712,-0.01236554860069771,0.03161635391837006,-0.0016687786718452733 -lateraloccipital,0.02942108460111513,-0.017427649293541205,0.02004955047329199,0.2809045503963559,0.04043801993599396,-0.009633995542533646,0.07633690865161323,0.0695515266124919,0.07509810244525134,0.012806076431901769,-0.010581259891672997,1.0,0.03367519778160899,0.24263850097691814,-0.01964729186407448,0.04224497596317196,0.0042801161040920774,0.05100809384471082,0.00517393887885661,-0.0033164772460866827,-0.0016437118756943913,0.18577773176531998,0.03380725905413118,-0.03133586324538649,0.006176883064497991,-0.004786221074585223,0.014228568926607234,-0.006100921618501312,0.022938116745578763,0.04692967821975264,0.01581282579942809,0.01795015249929282,0.000637537243158829,0.02862501092070753 -lateralorbitofrontal,0.017697883803429244,0.004756160000283808,0.04076780030318918,0.02414190356994555,-0.008569287624852349,0.05628783935976306,0.010784256496855864,0.03980429992397175,0.032529241838894996,0.05770261022662986,0.025957494831127526,0.03367519778160899,1.0,0.042180423287478466,0.23504281003889216,0.031016217550631463,0.005459958244253534,0.0016336380610934365,0.01565282804230717,0.14796286180523274,0.049103568321590775,-0.001915484465140408,0.007547038069925859,-0.011329275516478304,0.021951909945129775,0.01196134286472777,0.016934718763952677,0.06163976172174775,0.048984360500391615,0.03240164363485347,0.057912971604893955,0.020399029659172268,0.11289739142566205,-0.0009709034146100644 -lingual,-0.014245591779077433,-0.004807641132899936,-0.009573350491313899,0.5993947719457627,0.026190169425990333,0.0061445361675158015,0.05963728049621702,0.02363871069015267,0.04360237526252265,0.0020008365737682024,0.06788640266994869,0.24263850097691814,0.042180423287478466,1.0,0.006777153005794877,0.02310603269030362,0.003985431053035295,0.08364580193902767,-0.006038873345949267,0.014949387190620708,-0.011926336133751814,0.5232415413114637,-0.0015049465099834548,0.02052377913218062,-0.027242959848551667,0.06742998305115976,-0.012224050842713108,-0.008899189220141726,-0.010918685954821853,0.03930984156907557,-0.025185437499125437,-0.02393166245266619,-0.001542854737127663,0.024702553934134463 -medialorbitofrontal,-0.003345957452144661,0.029796368446651077,-0.0016905691393028488,-0.01516867507232385,-0.0068532245541084846,0.2185316926058105,-0.0028684113169365885,-0.011389729950957972,0.02729790515793465,0.08484265912042384,0.002478410130813712,-0.01964729186407448,0.23504281003889216,0.006777153005794877,1.0,0.019665794807477027,-0.005520693580425631,-0.006021832901141943,0.02271224146808366,0.11177156203664146,0.05475974125901298,-0.004146023967358685,-0.013899862949038442,0.015485174338597994,-0.017523287195015124,0.0400617643989017,0.05582179543861477,0.04670480338635556,0.04425269977054658,0.025001051366038543,0.03611273902606299,0.0010937925532818822,0.13630185723037147,-0.016516236578625686 -middletemporal,0.15699906648796386,-0.008347200206975103,0.023798466481585647,-0.007707527838773485,-0.004052338791380327,0.014805116194304246,0.032755643387715305,0.08338867540554376,0.21075962157613926,0.021962941775683146,0.014235964942338091,0.04224497596317196,0.031016217550631463,0.02310603269030362,0.019665794807477027,1.0,0.009264803400044956,-0.015359682111760128,0.002994415987350953,0.0052696814728725215,0.008645080444571998,-0.012591882755893596,-0.009134318541084563,0.03489306761853143,0.024988125204401728,-0.020078449450039025,0.010648776379863906,-0.0056613275549761595,0.00899314896207401,0.014340751076745852,0.13388686381282242,0.0780862051146604,0.02362182953039853,0.05538166933274406 -paracentral,0.0037210339351400716,0.025170580637617204,0.02325284166232045,0.008677052609652873,0.007043127151074803,-0.010318255332163217,-0.017469195624463463,0.018280106940381208,-0.01962163392255914,-0.016433458235542337,0.05573764476413662,0.0042801161040920774,0.005459958244253534,0.003985431053035295,-0.005520693580425631,0.009264803400044956,1.0,0.007107585566598472,-0.027686840679627567,8.144100512164891e-05,-0.030356227321817482,-0.026940203823003217,0.06062013837677743,0.1274554128058802,0.07549966664025144,0.020243652835832297,0.001249609055437606,-0.023711576370091938,0.014149607510367791,0.02320354165955705,0.012506543148297786,-0.015201031401788209,-0.0040460736209906485,-0.03635112894207535 -parahippocampal,0.02974020124107506,0.014314689358366744,-0.030635580891396837,0.00824757561890563,0.2703904471155368,-0.029370891275849662,0.1397487524416292,0.015463582735562769,0.010101669075879484,0.009955818055481657,0.08468671327193586,0.05100809384471082,0.0016336380610934365,0.08364580193902767,-0.006021832901141943,-0.015359682111760128,0.007107585566598472,1.0,0.00424834451363544,-0.01745787028667801,0.007437411920885796,0.01296425562164067,0.015990325237370692,-0.020036063809125013,0.009335227026368416,0.030197715981479824,-0.015486422206725156,-0.023450397557668506,0.0318476295313396,0.03963031760249712,0.003071507988780817,-0.004356271530885241,0.10279105896355491,-0.005657465317821849 -parsopercularis,0.026234616127636258,0.011461184167611905,0.022484660240956033,-0.007481086058475123,0.01794591987362814,-0.013123170618234838,0.023275370932182467,-0.02944798946583683,0.019472185225383267,0.04772385769181712,-0.023220835365822205,0.00517393887885661,0.01565282804230717,-0.006038873345949267,0.02271224146808366,0.002994415987350953,-0.027686840679627567,0.00424834451363544,1.0,0.052447808380865296,0.1284173511252841,-0.007509663095566801,0.034583465891144666,0.011915581054910411,0.02134963701828848,-0.003283889511669415,0.011510775204384174,0.07471290788977347,0.0857803659418702,0.0024555987264796237,0.01568878626072611,-0.010786124298247457,0.02852584005736947,0.007200927830121747 -parsorbitalis,0.008230268500601606,0.006500145711992009,0.03556457131612318,-0.007838811775889756,0.018340578378041955,0.01639794896777044,0.038965048381968986,-0.012609324270101712,0.018737733744135097,0.08966360151389646,-0.012885993957102968,-0.0033164772460866827,0.14796286180523274,0.014949387190620708,0.11177156203664146,0.0052696814728725215,8.144100512164891e-05,-0.01745787028667801,0.052447808380865296,1.0,0.1508021425303066,-0.044526587060265334,0.0061801332069591295,-0.013303198006404908,0.001284665713937192,0.004328798861219162,0.0044745897245822615,0.09083735627698977,0.042532747704390715,0.003974814141287883,0.027547411345788926,0.01306213089578806,0.0898832753272797,-0.010214763586677646 -parstriangularis,0.02899891045212434,-0.011265971003216243,0.023316711717201524,-0.009256020435882417,-0.009800056235577457,0.026061095089740517,0.04279431656758181,-0.007359918558287355,0.035484171020192856,0.06463744210218189,0.011412624625527211,-0.0016437118756943913,0.049103568321590775,-0.011926336133751814,0.05475974125901298,0.008645080444571998,-0.030356227321817482,0.007437411920885796,0.1284173511252841,0.1508021425303066,1.0,-0.01484149163154213,0.043657400877335495,-0.006422860122748098,0.00985393690578448,-0.008029271819949587,-0.009206418251170141,0.09914254599116566,0.06396004896684526,0.013408541559502723,0.002604467304623407,-0.00681944252581894,0.07113521092473948,0.003537444920286843 -pericalcarine,-0.037886576484818975,-0.011786977669326683,-0.00583448118074881,0.6857610521884607,-0.0015769320188575029,0.009108318425684608,-0.0006523747980748637,0.005178433941443197,-0.0026378647143443946,-0.004851078823767342,0.038398495673681476,0.18577773176531998,-0.001915484465140408,0.5232415413114637,-0.004146023967358685,-0.012591882755893596,-0.026940203823003217,0.01296425562164067,-0.007509663095566801,-0.044526587060265334,-0.01484149163154213,1.0,-0.013391929207026693,0.0125114593384314,-0.01144127423332224,0.04289002461384713,-0.02090580648997175,-0.02346625414860799,0.012710720786001002,0.0331461993255788,-0.033449263315642436,-0.04337573064381018,0.008273605247772603,0.012630925445616926 -postcentral,0.061904404291056994,0.006915919170578197,0.047290781432779205,0.013563683757749904,0.003944880581848714,-0.009505835882252825,0.00015382764866061276,0.03326316312350664,-0.002198334031948673,0.00751027073932375,-0.010726047511455443,0.03380725905413118,0.007547038069925859,-0.0015049465099834548,-0.013899862949038442,-0.009134318541084563,0.06062013837677743,0.015990325237370692,0.034583465891144666,0.0061801332069591295,0.043657400877335495,-0.013391929207026693,1.0,0.006774021797740436,0.2922534409810002,0.04598728623986336,-0.003561710137524415,0.007642565170071868,0.01596010888646577,0.05627665531871531,0.05365933437591093,0.29198812616602104,0.011608108398370632,0.0003119522380707854 -posteriorcingulate,0.017121152482636574,0.14378268544311912,-0.026030693408085802,7.56465781013224e-05,-0.0480884838709612,-0.00046044623085435407,0.011179820752726773,-0.0012614768809604056,0.022680608805818528,0.014179351001880358,0.12454706774691744,-0.03133586324538649,-0.011329275516478304,0.02052377913218062,0.015485174338597994,0.03489306761853143,0.1274554128058802,-0.020036063809125013,0.011915581054910411,-0.013303198006404908,-0.006422860122748098,0.0125114593384314,0.006774021797740436,1.0,0.0010404854409036548,0.07345314443265165,0.04137235829277183,0.0017324506835570091,0.05606781498098953,0.03405928230734219,-0.024549986672466974,-0.01910320516075372,-0.0001755021359907782,-0.03519399975581748 -precentral,0.03910923278836007,-0.013976192111801853,0.1870196798261705,0.0024904133951963482,0.014785748986535414,-0.012250786875856077,-0.01136282698561613,0.07536734058393249,0.0019254005066118894,0.034810826626142134,-0.013514744986352379,0.006176883064497991,0.021951909945129775,-0.027242959848551667,-0.017523287195015124,0.024988125204401728,0.07549966664025144,0.009335227026368416,0.02134963701828848,0.001284665713937192,0.00985393690578448,-0.01144127423332224,0.2922534409810002,0.0010404854409036548,1.0,0.07408393855563661,-0.001413178602541703,0.07385317087218071,0.02067399561393758,0.10459721413271843,0.046915010142753386,0.2620102624437462,-0.0029924361388754483,0.028312882815633482 -precuneus,-0.001537346365374176,0.061052482869846145,0.01468358272885013,0.11062310836410234,0.02714481498557742,0.011294541842230811,-0.00764233709976103,0.03485495710250961,0.003906728723407311,0.016270540925521014,0.12753388051250164,-0.004786221074585223,0.01196134286472777,0.06742998305115976,0.0400617643989017,-0.020078449450039025,0.020243652835832297,0.030197715981479824,-0.003283889511669415,0.004328798861219162,-0.008029271819949587,0.04289002461384713,0.04598728623986336,0.07345314443265165,0.07408393855563661,1.0,0.03847625265659435,0.05283345525137726,0.029715453491525597,0.1644586837714696,0.0029561128181112015,0.049578186256998405,-0.01614393022798814,0.008528696082194783 -rostralanteriorcingulate,0.003731096627667153,0.15878130968410836,0.017992800745195707,-0.0038635658639909537,-0.03997063044970919,0.030038829759007065,-0.013588642300200068,-0.0020133880125777453,0.030467069108664317,0.0001532513164704005,0.028033360040579804,0.014228568926607234,0.016934718763952677,-0.012224050842713108,0.05582179543861477,0.010648776379863906,0.001249609055437606,-0.015486422206725156,0.011510775204384174,0.0044745897245822615,-0.009206418251170141,-0.02090580648997175,-0.003561710137524415,0.04137235829277183,-0.001413178602541703,0.03847625265659435,1.0,0.010973595386862404,0.034107936431424936,0.008691082827219618,0.00714796794496459,0.01064827339760301,-0.01405269250777235,0.027137032366943446 -rostralmiddlefrontal,0.03455570900109161,0.0330900358269499,0.1234593567220779,0.004733809422315622,-0.018248887349987288,0.038757462948939114,0.04247680571644289,0.020769746751129033,0.033221037583652434,0.02865580770390793,0.028509342798788872,-0.006100921618501312,0.06163976172174775,-0.008899189220141726,0.04670480338635556,-0.0056613275549761595,-0.023711576370091938,-0.023450397557668506,0.07471290788977347,0.09083735627698977,0.09914254599116566,-0.02346625414860799,0.007642565170071868,0.0017324506835570091,0.07385317087218071,0.05283345525137726,0.010973595386862404,1.0,0.1200649150386125,-0.004499250592734656,0.046191544087983996,-0.006095330710069534,0.017623177243394957,-0.022117255711806984 -superiorfrontal,0.03319659005674946,0.09505528427260575,0.1280545608129755,-0.007082228608963589,-0.015868334673145287,0.039258460236639994,0.05158637533341208,0.01694918922794275,0.046722881979077764,0.04877157151459136,0.010880768822670913,0.022938116745578763,0.048984360500391615,-0.010918685954821853,0.04425269977054658,0.00899314896207401,0.014149607510367791,0.0318476295313396,0.0857803659418702,0.042532747704390715,0.06396004896684526,0.012710720786001002,0.01596010888646577,0.05606781498098953,0.02067399561393758,0.029715453491525597,0.034107936431424936,0.1200649150386125,1.0,-0.02703303595411896,0.011902307294461451,0.020394905236266168,0.06518296618330376,-0.0480642393661925 -superiorparietal,0.035855027884694315,-0.005276912323812086,0.0293677158989271,0.06941429071569248,0.027281802510633953,0.0006656189282725238,0.006730934743141889,0.12819607299149216,-0.006035296497051996,0.05722522106402154,0.0981664729877915,0.04692967821975264,0.03240164363485347,0.03930984156907557,0.025001051366038543,0.014340751076745852,0.02320354165955705,0.03963031760249712,0.0024555987264796237,0.003974814141287883,0.013408541559502723,0.0331461993255788,0.05627665531871531,0.03405928230734219,0.10459721413271843,0.1644586837714696,0.008691082827219618,-0.004499250592734656,-0.02703303595411896,1.0,0.06080349004780993,0.11148841601783363,0.01635451803936945,0.017097816292633964 -superiortemporal,0.18261011109452077,0.016539528665821222,0.042653303000614394,0.005065145395828881,0.026399346333635415,-0.024287489280892194,0.04871695333493835,0.02679227039367769,0.0808460216393329,0.07911150726586166,-0.006598590592867712,0.01581282579942809,0.057912971604893955,-0.025185437499125437,0.03611273902606299,0.13388686381282242,0.012506543148297786,0.003071507988780817,0.01568878626072611,0.027547411345788926,0.002604467304623407,-0.033449263315642436,0.05365933437591093,-0.024549986672466974,0.046915010142753386,0.0029561128181112015,0.00714796794496459,0.046191544087983996,0.011902307294461451,0.06080349004780993,1.0,0.08885625281209597,0.059439237249393526,0.1741138439994553 -supramarginal,0.1440385361295503,-0.005502308964355541,0.027762722680116435,-0.02543887075201915,0.0032762245993328367,-0.009910117874197424,-0.010720836127469536,0.09007827085493016,0.040782985269464216,0.062322892584693784,-0.01236554860069771,0.01795015249929282,0.020399029659172268,-0.02393166245266619,0.0010937925532818822,0.0780862051146604,-0.015201031401788209,-0.004356271530885241,-0.010786124298247457,0.01306213089578806,-0.00681944252581894,-0.04337573064381018,0.29198812616602104,-0.01910320516075372,0.2620102624437462,0.049578186256998405,0.01064827339760301,-0.006095330710069534,0.020394905236266168,0.11148841601783363,0.08885625281209597,1.0,0.023808423848679646,0.09512644188108994 -temporalpole,0.03576236095772439,0.011313378770228928,0.02977440621232875,0.0008383064713577302,0.10126366134792956,0.011518722941768958,0.058890216286126826,-0.012435640662733614,0.05400627161234644,0.11100255564386496,0.03161635391837006,0.000637537243158829,0.11289739142566205,-0.001542854737127663,0.13630185723037147,0.02362182953039853,-0.0040460736209906485,0.10279105896355491,0.02852584005736947,0.0898832753272797,0.07113521092473948,0.008273605247772603,0.011608108398370632,-0.0001755021359907782,-0.0029924361388754483,-0.01614393022798814,-0.01405269250777235,0.017623177243394957,0.06518296618330376,0.01635451803936945,0.059439237249393526,0.023808423848679646,1.0,-0.03186172089923754 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a/simulated_data/scaling_experiment_lichtman_chii2_different_time_consts/simulated_fc_groundstate.csv +++ /dev/null @@ -1,35 +0,0 @@ -area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal 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a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_lh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_lh_use_corrcoeff_False.csv @@ -1,10 +1,12 @@ -1.0,0.37143425613173037 -1.25,0.37057460850595486 -1.5,0.37260812962759177 -1.75,0.37374267773181574 -2.0,0.37453856166161537 -2.25,0.3767793618980455 -2.5,0.3771879370956534 -2.75,0.3803248442354008 -3.0,0.3808418006379882 -4.0,0.3869113201129898 +,0 +0.0,0.36818941878849676 +1.0,0.37133732697546357 +1.25,0.37174989531326613 +1.5,0.3731246239231405 +1.75,0.3737982601665671 +2.0,0.37523059755244903 +2.25,0.37706746569967287 +2.5,0.3766181008205598 +2.75,0.37870495359010387 +3.0,0.37866774607082887 +4.0,0.3853367421409181 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_lh_use_corrcoeff_True.csv b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_lh_use_corrcoeff_True.csv index b10f6f5..74e5b55 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_lh_use_corrcoeff_True.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_lh_use_corrcoeff_True.csv @@ -1,10 +1,12 @@ -1.0,0.22865999818648786 -1.25,0.14363844591596403 -1.5,0.24647308868403886 -1.75,0.2747260037677635 -2.0,0.31885684235788575 -2.25,0.3575840697891569 -2.5,0.3910831053601302 -2.75,0.3988141320213341 -3.0,0.43768216677697086 -4.0,0.4028698612426771 +,0 +0.0,0.034068204099099504 +1.0,0.18843262926812704 +1.25,0.218502349825355 +1.5,0.2747545508420704 +1.75,0.2833361260771484 +2.0,0.2923745339639023 +2.25,0.38476368090949414 +2.5,0.4113815255751624 +2.75,0.4008490287853319 +3.0,0.4392525220887361 +4.0,0.4423012334483271 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_False.csv b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_False.csv index a6b465d..c48a051 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_False.csv @@ -1,10 +1,12 @@ -1.0,0.37162005333731724 -1.25,0.370671872277898 -1.5,0.3728255329610937 -1.75,0.37394991830331925 -2.0,0.3748310581048341 -2.25,0.37713747667913355 -2.5,0.37764754390750244 -2.75,0.3809820071929505 -3.0,0.3814560608135277 -4.0,0.38776690584430745 +,0 +0.0,0.36816677481364146 +1.0,0.37146111279407684 +1.25,0.37211720042597274 +1.5,0.37332867957005683 +1.75,0.37383516990229626 +2.0,0.37546249426461104 +2.25,0.3775457948661606 +2.5,0.37717554234073536 +2.75,0.3792099622994004 +3.0,0.37905540581150554 +4.0,0.38618619901751366 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_True.csv b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_True.csv index 03d97be..c286c07 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_True.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/df_corr_rh_use_corrcoeff_True.csv @@ -1,10 +1,12 @@ -1.0,0.23235802987249682 -1.25,0.1429555048147221 -1.5,0.24871079506168065 -1.75,0.27175218954369945 -2.0,0.3192774231998171 -2.25,0.3581460849444559 -2.5,0.39372467913533354 -2.75,0.41364853495774595 -3.0,0.44058786162603203 -4.0,0.4060134396551944 +,0 +0.0,0.0282553034873927 +1.0,0.18674733715465283 +1.25,0.2472314602062769 +1.5,0.27223880148278234 +1.75,0.25774837848902643 +2.0,0.2881626478855736 +2.25,0.3922706124457615 +2.5,0.42503551989803157 +2.75,0.4045136520557519 +3.0,0.424858540417258 +4.0,0.4422853704040081 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_cv.npy b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_cv.npy index a897926..53a46b0 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_cv.npy and b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_cv.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_lvr.npy b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_lvr.npy index 2bdf39e..49502c4 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_lvr.npy and b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_lvr.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_rates.npy b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_rates.npy index 3f977ab..ef1f953 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_rates.npy and b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/exp_rates.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/ks_cv_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/ks_cv_arr.json index 92c0cb7..3802417 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/ks_cv_arr.json +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/ks_cv_arr.json @@ -1 +1 @@ -{"1.75": 0.4166282853415326, "4.0": 0.44105280408578584, "1.0": 0.4091676693637172, "2.75": 0.4347532387307915, "3.0": 0.44552751696827664, "2.5": 0.43073063328571404, "1.5": 0.4036103521122306, "1.25": 0.4242469749707827, "2.0": 0.4194299398827567, "2.25": 0.40962798932711575} \ No newline at end of file +{"2.5": 0.3929579773258003, "1.5": 0.37797578353333106, "1.75": 0.39296455865018065, "0.0": 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at end of file +{"2.5": 0.7362152354873122, "1.5": 0.7303541416872508, "1.75": 0.7293892042526927, "0.0": 0.7226901337567118, "2.75": 0.7284209121415497, "1.25": 0.7316652512169238, "4.0": 0.7415919278880264, "3.0": 0.7414459860742055, "2.25": 0.7331582356778793, "1.0": 0.727845001858781, "2.0": 0.7309121965074343} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/path_to_chi.json b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/path_to_chi.json index 8acf9ba..0946a8a 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/path_to_chi.json +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/path_to_chi.json @@ -1 +1 @@ -{"1.75": "2c60ac72127fa0089cf8c65a9f4aaf8e", "4.0": "349e4572253d7264d71a61b10dd4b7f3", "1.0": "38c92ec7b713e1af25169b09ea8b4155", "2.75": "3e2840d0e00cdbc0bdd11b22cb89c399", "3.0": "5cc5c45cfc49cd75d22c7a039732722e", "2.5": 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a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_cv_bestfit.npy and b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_cv_bestfit.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_cv_groundstate.npy b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_cv_groundstate.npy index 5f97cc1..fd5332a 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_cv_groundstate.npy and b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_cv_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_lvr_bestfit.npy b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_lvr_bestfit.npy index eefb4c3..f2ca492 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_lvr_bestfit.npy and 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a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_rates_groundstate.npy b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_rates_groundstate.npy index 4598e5e..0fdbed9 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_rates_groundstate.npy and b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/sim_rates_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/simulated_fc_bestfit.csv b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/simulated_fc_bestfit.csv index 59d84eb..3758b57 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/simulated_fc_bestfit.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/simulated_fc_bestfit.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal 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-inferiorparietal,0.020002532238561254,-0.0007166811081155865,0.02050614119186429,0.02243510199331485,-0.020493305016240575,-0.01360359469108666,-0.010704818978828924,1.0,-0.011891569101113279,0.010977399198326021,-0.003716886717004592,0.0005600716143503848,0.0008750181964245471,0.013746949052445896,-0.0023447273565118517,0.02605226961680238,0.0016565863994330184,0.013801480511548045,0.011269647567692354,-0.0035534880646089693,-0.001638303558145076,-0.003352471982272816,0.01661851776478433,-0.029007707884775243,0.02508618689765569,0.017239434378302904,0.008672979575061798,0.0008555889853634266,0.016312454219279647,0.04527629747524748,0.016178825788670997,0.040657914853927356,-0.007718140573393586,-0.008694542806845793 -inferiortemporal,0.02675630512508504,-0.013423871985288282,0.013553426949596626,0.01660638781694235,0.01170310929563856,0.010725147059252064,0.0577053100421086,-0.011891569101113279,1.0,0.006572138974319541,-0.015442889335314042,0.029342169625843486,0.005954305275677619,0.02975161513201585,0.012781547717357622,0.049062945938999056,0.00037946167030255965,-0.0036431792151216673,0.030511366443707433,-0.007041335864733587,-0.006124585409462669,0.0025473399632867143,0.004830337568037714,-0.010477466971958943,-0.015501150962222552,0.007434881396209346,-0.012449182833730811,-0.00013987575396303905,0.01124323457089658,0.0017880136207364052,0.011886983742912577,0.0028144233038472923,0.00394376526148155,-0.00041362782597098596 -insula,-0.011291359243455278,-0.01419419364061252,-0.01752113942990899,0.00031414481568877155,0.01599711517090336,0.03156172944325947,-0.0056324841719309,0.010977399198326021,0.006572138974319541,1.0,-4.608433276064797e-06,0.0230568733543121,0.04063731501814019,0.010210001257650335,0.0036942449572433763,-0.007288927084118932,-0.0013785255004008206,0.008936357121989329,0.014009553127346253,0.012335267174860082,0.026408284030693008,0.005069879533326334,0.013902349892513738,0.0079383007198165,0.021033258306466265,-0.007708270849559033,-0.004100508271708976,0.011940561793877744,0.0022965844530048814,0.024699910400179395,0.03221511559266865,0.019486486626903735,0.056422382362805876,0.015907867497377236 -isthmuscingulate,-0.012222858541374155,0.010171202073405997,-0.010459907833370672,0.049052897070105794,0.03370260689607395,0.012302859461211296,0.0037485643540467782,-0.003716886717004592,-0.015442889335314042,-4.608433276064797e-06,1.0,-0.002199725488595163,-0.014307509885239655,-0.0015200162154201976,-0.0018911811150256052,0.005068712191682594,0.024237720218616594,0.007946542249037432,-0.017050347034633963,-0.02771512832708993,0.015299236939270527,0.02059350921978433,-0.0025772235228668197,0.02792921591950556,-0.011394084008724098,0.037457129036748554,0.021010993866240585,-0.0010533345206905074,-0.01708818863552503,0.03327508021825388,-0.01448835637187903,-0.016856263621081755,0.0019889144058999123,-0.014550793715303665 -lateraloccipital,-0.0069343027033237185,-0.011269425792149098,-0.010318533210240266,0.03656245925839714,0.0067374919258822025,-0.008386870324738383,0.0187214816459306,0.0005600716143503848,0.029342169625843486,0.0230568733543121,-0.002199725488595163,1.0,0.012935374812462897,0.03537385785768966,0.012282173251771321,-0.00867890245840642,0.004246499584151544,0.005846052180060007,0.0049864170586272705,-0.0006647077963996021,-0.008353744564062553,0.03591203307420911,-0.006031877742959332,-0.021765718108933726,-0.005812366559876419,0.005902451450607137,-0.0010515028958409665,0.0011194994627647735,0.009677374494737712,0.020471664138963605,-0.005886212700239683,0.008857132126900357,0.02883324327169361,-0.0002454944058453382 -lateralorbitofrontal,-0.011436476459252908,0.0018271373026940443,0.003556783814398088,0.00114710642679022,0.01672002099361341,0.04426828652882221,-0.0026088459719877956,0.0008750181964245471,0.005954305275677619,0.04063731501814019,-0.014307509885239655,0.012935374812462897,1.0,-0.0023606129274907784,0.03622976907026792,0.027304031070543133,0.01203052381985608,0.005813671887553834,0.03420436775192238,0.03002068206430119,0.013289529953986877,0.002464303522161173,0.002251824944924939,0.019168964672890074,0.014040052671119374,0.020625438436872014,0.016011345414110402,0.012266421053296317,-0.006154374706142159,0.03287256775944094,0.007657510155573718,0.013381717531754855,0.01878745086409177,-0.004068635642359195 -lingual,0.001412006739147291,0.011628686389588446,0.01291397163966738,0.1395207916880587,-0.0030103574406994244,-0.010213696866183883,0.013191840602286311,0.013746949052445896,0.02975161513201585,0.010210001257650335,-0.0015200162154201976,0.03537385785768966,-0.0023606129274907784,1.0,0.006125682230793562,0.012577767816113515,-0.002846298607070598,0.021027091417819485,-0.0009830363947156782,-0.0009350739340907469,0.01577394114111939,0.1277946554277839,-0.014224870816917952,-0.00941019004629789,-0.014743546221336522,0.013469184737164006,0.003474262146330498,-0.0070314210496281076,-0.014853120385663967,0.027465423940123312,0.022734447661072636,-0.0015013211324237628,0.028629697247446583,0.006682603258116478 -medialorbitofrontal,-0.0036803777769590573,-0.00021331462509776864,0.008760537068276036,0.014917542635362909,-0.016390935203823658,0.0415954853461246,0.004132324748519527,-0.0023447273565118517,0.012781547717357622,0.0036942449572433763,-0.0018911811150256052,0.012282173251771321,0.03622976907026792,0.006125682230793562,1.0,-0.009282914337593274,0.010768198096294371,-0.009404499615965312,0.0030382054571698454,-0.006222497994912075,0.016874670741726838,0.006840208622505885,0.009790349369910379,0.012367504764045665,-0.001432984450483395,-0.011366421521534723,0.029206208505569577,-0.009902592998002372,-0.02026222049969155,-0.018519232075750017,-0.001505808721737839,-0.010843046133322981,0.0433525682371556,0.02117136777705216 -middletemporal,0.06341465343279856,0.024954962335228936,0.0019934053084303717,-0.018873026955032478,-0.008364088525374914,-0.023017012048287145,0.008784117719318687,0.02605226961680238,0.049062945938999056,-0.007288927084118932,0.005068712191682594,-0.00867890245840642,0.027304031070543133,0.012577767816113515,-0.009282914337593274,1.0,-0.0006539102381817835,-0.00257736825930626,0.001142249742474729,0.010858785874523817,-0.002141521349060427,-0.003276970809904019,0.028246206351830883,0.004891403747826014,0.014280327386215954,-0.003638182514777512,0.0014815799376456688,0.014153178572568864,-0.007149104534394513,0.022351883925818886,0.030350985984709866,0.021726237328197392,-0.006347411713181028,-0.011543598649028184 -paracentral,0.013833420928692424,0.0007652489200561639,-0.0008010044096006342,0.01763441235256009,0.013870352114043492,-0.007243539139881099,0.005600610194694957,0.0016565863994330184,0.00037946167030255965,-0.0013785255004008206,0.024237720218616594,0.004246499584151544,0.01203052381985608,-0.002846298607070598,0.010768198096294371,-0.0006539102381817835,1.0,0.00614851413316876,0.010516926922456166,-0.006992839266856988,0.006050128815742482,0.016926559954452712,0.0034714396386074805,0.03202227928197876,0.031803058619107344,-0.00839901081133827,-0.024683482509216093,-0.025033058293719452,-0.014833503323904491,0.0026496216305636217,0.016027428757013,-0.0008423767953881425,-0.03382446951354135,0.0007006998996705453 -parahippocampal,-0.014772213525171975,0.00985380491942183,-0.0013147916453250135,0.013737320110360387,0.03892626147590087,0.001985072051115973,0.025022440456288732,0.013801480511548045,-0.0036431792151216673,0.008936357121989329,0.007946542249037432,0.005846052180060007,0.005813671887553834,0.021027091417819485,-0.009404499615965312,-0.00257736825930626,0.00614851413316876,1.0,-0.002908555378573082,0.002823718108503265,0.004178828439916878,-0.0047697610125983754,0.0011460075813814416,0.02166730465737401,-6.994382607681171e-05,-0.005856210674631519,-0.015925325648204463,0.004957644611483964,0.011400457688785351,-0.005626490826110678,0.0143247280416275,-0.008182045019173755,0.021300011563782723,0.009144228608743863 -parsopercularis,-0.001883708750082545,0.008615102852320559,0.006661147833799085,-0.010067685646400135,0.00015579883645209505,0.005287117443774703,0.006627178708402237,0.011269647567692354,0.030511366443707433,0.014009553127346253,-0.017050347034633963,0.0049864170586272705,0.03420436775192238,-0.0009830363947156782,0.0030382054571698454,0.001142249742474729,0.010516926922456166,-0.002908555378573082,1.0,0.02585722789231783,0.03245659047462674,-0.010444149622282252,0.014068521668595579,-0.011436321608230623,0.020548196501684254,-0.014869508381382209,-0.0013075495380589289,0.021069612721666835,0.02206733737418975,0.014160867117551833,0.020198687227536306,0.027994093526199228,-0.0060411634557119166,-0.011491664680634424 -parsorbitalis,-0.0004091680719590239,-0.016011532432741164,0.012993461216023936,0.002489260553007987,0.01314600695146578,0.0002206074389021104,-0.009911501758441786,-0.0035534880646089693,-0.007041335864733587,0.012335267174860082,-0.02771512832708993,-0.0006647077963996021,0.03002068206430119,-0.0009350739340907469,-0.006222497994912075,0.010858785874523817,-0.006992839266856988,0.002823718108503265,0.02585722789231783,1.0,0.017443906700399806,-0.01851361869752153,-0.004410216062308994,0.007117176132326506,-0.006268776472791276,0.006187695165331512,0.0025603056717153215,0.02226155951375105,0.00028969004514128963,-0.0062492041947844156,0.004637387790983985,-0.0026211754048044347,0.025608888151200562,-0.008697641740607038 -parstriangularis,0.017944841518895176,0.0036024776751766518,0.003960403073514333,0.016376420612224857,-0.017017322780439107,0.011315667159309503,0.01728864055358745,-0.001638303558145076,-0.006124585409462669,0.026408284030693008,0.015299236939270527,-0.008353744564062553,0.013289529953986877,0.01577394114111939,0.016874670741726838,-0.002141521349060427,0.006050128815742482,0.004178828439916878,0.03245659047462674,0.017443906700399806,1.0,0.00016127591169591196,0.0017578467536731647,-0.010009735774968326,-0.02200632634500944,0.017211134280047054,-0.004418906784417189,0.03546098125376167,-0.012431394290025658,0.013458226358193666,-0.006468998805516207,-0.019104304006748195,0.007499810093650454,7.970240566794539e-05 -pericalcarine,0.043974482881356455,0.006882213818662659,-0.0020147736055043555,0.20561843974490598,-0.0254479496122473,-0.022167858948220813,0.005879413385372599,-0.003352471982272816,0.0025473399632867143,0.005069879533326334,0.02059350921978433,0.03591203307420911,0.002464303522161173,0.1277946554277839,0.006840208622505885,-0.003276970809904019,0.016926559954452712,-0.0047697610125983754,-0.010444149622282252,-0.01851361869752153,0.00016127591169591196,1.0,-0.011974485552823048,0.011777227753938775,-0.008486325741837192,0.008860318884723425,0.012143588081418534,0.013450319917416532,0.0028981129390865655,0.013152184188267814,0.021675083471695906,0.004919834419243046,0.016404942942269272,0.0026308913346405707 -postcentral,0.001530517956984419,0.023807898889278648,0.017764262157284678,0.012023545369360103,-0.010205840673918515,0.012287617943632548,-0.000305204045538156,0.01661851776478433,0.004830337568037714,0.013902349892513738,-0.0025772235228668197,-0.006031877742959332,0.002251824944924939,-0.014224870816917952,0.009790349369910379,0.028246206351830883,0.0034714396386074805,0.0011460075813814416,0.014068521668595579,-0.004410216062308994,0.0017578467536731647,-0.011974485552823048,1.0,-0.007985963600655219,0.11402181476187276,0.009047243750146507,0.008954393142541307,-0.014684789556047791,0.012047009107459499,0.00426637133012782,-0.0076058362345609535,0.06687259427716116,0.01272244167860416,0.00160731414716495 -posteriorcingulate,0.005455270761706778,0.039369588052055184,-0.010828801478800543,-3.142062460826435e-05,0.002933123127235392,-0.004013547193896648,-0.022334923521001606,-0.029007707884775243,-0.010477466971958943,0.0079383007198165,0.02792921591950556,-0.021765718108933726,0.019168964672890074,-0.00941019004629789,0.012367504764045665,0.004891403747826014,0.03202227928197876,0.02166730465737401,-0.011436321608230623,0.007117176132326506,-0.010009735774968326,0.011777227753938775,-0.007985963600655219,1.0,0.014096910048044826,0.00808869616936777,0.0031634597124480914,-0.0035904633468261506,0.0020546433737790057,-0.020322272797110845,-0.0013315212181290166,-0.007207347049672852,0.008137994434837006,-0.018780990751326367 -precentral,0.028457947415344634,0.005749511280689417,0.037235162942201076,0.008082735858521166,-0.017540302860221128,-0.0183749840505568,0.010531143015623603,0.02508618689765569,-0.015501150962222552,0.021033258306466265,-0.011394084008724098,-0.005812366559876419,0.014040052671119374,-0.014743546221336522,-0.001432984450483395,0.014280327386215954,0.031803058619107344,-6.994382607681171e-05,0.020548196501684254,-0.006268776472791276,-0.02200632634500944,-0.008486325741837192,0.11402181476187276,0.014096910048044826,1.0,-0.010042860049676593,-0.012757977124432945,0.0017167685128171319,0.008922190661930772,-0.0010157465835020283,0.007029296982434537,0.04968206438533253,0.0045849552202852605,-0.0061188539757289955 -precuneus,0.010360537377593298,-0.0031244215284856537,0.011941007893973427,0.016071322893721193,0.007744422261824722,-0.01897183194110029,0.015919744556200887,0.017239434378302904,0.007434881396209346,-0.007708270849559033,0.037457129036748554,0.005902451450607137,0.020625438436872014,0.013469184737164006,-0.011366421521534723,-0.003638182514777512,-0.00839901081133827,-0.005856210674631519,-0.014869508381382209,0.006187695165331512,0.017211134280047054,0.008860318884723425,0.009047243750146507,0.00808869616936777,-0.010042860049676593,1.0,-0.010284187274496108,0.0009308356441564939,0.003413594510327134,0.052221276362395506,0.021781741465457066,0.01892820674824998,-0.005113361899587753,-0.0014813728209285058 -rostralanteriorcingulate,-0.004831562752325827,0.02709080253304642,-0.005628601994481681,-0.015917813384990154,-0.008623317179629282,0.01365263664700071,0.011190441156935385,0.008672979575061798,-0.012449182833730811,-0.004100508271708976,0.021010993866240585,-0.0010515028958409665,0.016011345414110402,0.003474262146330498,0.029206208505569577,0.0014815799376456688,-0.024683482509216093,-0.015925325648204463,-0.0013075495380589289,0.0025603056717153215,-0.004418906784417189,0.012143588081418534,0.008954393142541307,0.0031634597124480914,-0.012757977124432945,-0.010284187274496108,1.0,0.00817977329564854,0.011319245394832818,-0.023969579347485476,0.00685345206130734,-0.026847592753949937,0.005501324080464246,0.0024329659577582217 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a/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/simulated_fc_groundstate.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_distributed_params/simulated_fc_groundstate.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal 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-fusiform,0.012993274999608473,0.006221469440278447,0.016450460696439743,0.012747890467056123,0.012691262249094774,0.0002567054254964741,1.0,-0.0056248799200497536,0.026402750228438465,0.021468824226596083,-0.0017441162657566781,0.010414266276289596,0.013179288835516112,0.0127568421272007,0.007316441037125791,0.008688669796152234,0.008708603904296616,0.009265612914587357,0.004055395468871752,-0.01212036781809649,-0.01470154647530903,-0.003678799090466883,-0.00976770950948988,-0.011508385580302176,0.013714615787710467,0.008276325285801618,0.019304413449249897,0.017712459915958118,-0.012361849330519441,-0.0017844366897062055,0.03143023431897313,0.008160072019410148,0.01809779994897794,0.00863585176993614 -inferiorparietal,0.008103788497319832,0.0026729496791815317,0.0029006921071867667,0.01561567539394055,-0.019227732012599832,-0.0029185052667071052,-0.0056248799200497536,1.0,-0.0005612394141283204,0.012752464152942605,-0.008834619275215791,-0.004587304301197736,0.007739865572323987,-0.009998166351394373,-0.010801967975304977,0.008131292165757108,-0.025814379752553997,0.00278071122690524,0.005669415660969742,0.003223385087683026,0.0007743246023428977,0.0035581582138845503,-0.00925669890625095,0.003022638903951591,0.002636175773990616,0.00560694541130399,0.00021666184503937074,0.004499947182891647,0.030151844937397632,0.00485758273047432,0.009102404378729065,0.020822751493336365,-0.0008997485033976985,0.014886060735395319 -inferiortemporal,0.00854390458432845,-0.01698685486697888,0.00881205152921139,0.0008033847151932832,-0.002191375689678143,-0.011587350386902279,0.026402750228438465,-0.0005612394141283204,1.0,0.038845929344375786,0.021740790349340972,0.019846800859950765,0.009270187197728152,-0.015432738250500136,0.0298277988353104,0.021135516753496512,-0.014175234864465341,-0.0058846331303781365,0.003744447463887514,0.016287190556796734,0.009343323346091639,-0.0047938803333577055,-0.0003811024347951046,-0.014114391860470664,-0.020680258506201744,-0.003348822163814453,-0.021799016218432787,0.009080127225868906,0.020414482560833506,0.021818632971593976,0.025943364655377006,0.0016130037464488142,0.030026783558604546,-0.0018405788537609721 -insula,-0.011061251900428334,0.01057428630147953,0.0017993331829179462,0.027032747728884757,-0.0039865286608481544,0.0036428548179560627,0.021468824226596083,0.012752464152942605,0.038845929344375786,1.0,0.003468516891601191,-0.008440281800221798,-0.002826099149140075,0.011943461561340542,0.017427922117598138,-0.00387569402288859,0.0037780413502792615,0.013536504442320095,-0.000348839206722591,0.01882049936580119,0.006479215266864734,0.008614271219342254,0.008801662302711864,0.0092171670441384,-0.0023273849407837483,-0.00817830845782427,-0.0031440633621440625,-0.004684123141236732,-0.015395930086326474,0.007748487162700109,0.0007878990873271023,0.028417506448015002,0.010457170461884222,-0.01050096468669488 -isthmuscingulate,-0.007461798829947566,-0.0018712087049258276,0.002744628676265741,-0.016336365041947836,0.009791064367708517,0.011284904739427122,-0.0017441162657566781,-0.008834619275215791,0.021740790349340972,0.003468516891601191,1.0,-0.007229476051490148,0.003113440103025393,-0.018020051888227598,0.0005636094543357108,0.021096234128252938,-0.011307186386581337,0.001656272698017748,0.01444434089634749,-0.001414619036992641,-0.00039328684644916024,-0.003587036778640523,-0.01277479664394396,0.009860177868382529,-0.0015813886500647555,0.032396515561180186,0.00860343178150599,-0.0032271572592611217,-0.0009175761844573082,0.007461215899427338,0.008568845090497181,-0.0012577553014206414,0.0013757755730311046,0.011978598459088987 -lateraloccipital,0.020894247343241114,-0.018925289418470114,0.0038340205903270564,-0.0030797045215658417,-0.02457862429023792,-0.009646986611456448,0.010414266276289596,-0.004587304301197736,0.019846800859950765,-0.008440281800221798,-0.007229476051490148,1.0,5.435232018449105e-05,0.007868005342077756,-0.02023438530527444,0.00208673098608553,-0.005044916043007211,0.006497868854386745,0.0019171272617404696,0.013001330772616873,0.0060675257193391645,0.004478008317884227,0.0003136718735090266,-0.01319428011876029,0.008189920454614301,-0.001039774035112164,-0.018007544652637784,0.0017041944684215117,0.001145495381909759,-0.004689906359238769,0.005320514389984167,-0.008759038164319454,-0.003010563031566027,-0.006177625578691321 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-medialorbitofrontal,-0.007987292525179287,-0.0026848319027849184,-0.00520390422051413,0.019880108417494855,0.0017291122106036897,0.025389225022277657,0.007316441037125791,-0.010801967975304977,0.0298277988353104,0.017427922117598138,0.0005636094543357108,-0.02023438530527444,0.014923882672053164,-0.0069625446632530265,1.0,0.005094485162220393,0.009272016370565838,0.0019496576445344525,-0.023163675500714315,-0.000774086181683257,-0.004815647041600088,-0.008107482339665946,0.007560498082874125,0.02069722631363699,-0.0009677886384989457,0.0010943819040056828,0.0027548120831336733,-0.009048128153848176,-0.003471172643941053,-0.013441158485105978,-0.009137365966628957,-0.0008703994803418892,0.018775788892601668,-0.008008736240930799 -middletemporal,0.014047941819719313,0.012615364333125899,-0.014128658480719876,0.006420629168135134,0.003986336162499016,-0.013659415169607253,0.008688669796152234,0.008131292165757108,0.021135516753496512,-0.00387569402288859,0.021096234128252938,0.00208673098608553,-0.03221196412918354,-0.0006490327803566592,0.005094485162220393,1.0,-0.008295298777370468,-0.0007478387977398896,0.009061451330850921,-0.005685650990172524,0.011239941424088712,-0.006343394830414853,0.0026366026307191944,0.0017156681136915194,-0.0007795085087004199,-0.009352728628601837,-0.019733433571600217,0.01410607435177991,-0.00018530815407087509,0.017021152641996856,-0.0014692684465937471,-0.011809941868264548,6.522982931895298e-05,6.288684226798427e-05 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-parsopercularis,0.004384534933154065,0.018682950589044185,0.004421475532295471,-0.009725308288735524,0.008569179935157345,0.01883211729264955,0.004055395468871752,0.005669415660969742,0.003744447463887514,-0.000348839206722591,0.01444434089634749,0.0019171272617404696,-0.023438098050553934,0.010815332530285356,-0.023163675500714315,0.009061451330850921,-0.0003898412468048488,0.003986991342321872,1.0,-0.00270029377228297,-0.001506802122620544,-0.027561668711986724,0.006273980569160358,-0.003573232116518378,-0.0018419090938220977,0.032193099073426656,-0.001985798135231121,0.006977794249997565,0.014963787788790008,0.04328076181445388,-0.0023744089617113696,-0.0029367035819062833,0.004074981564027065,-0.010422788213373719 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a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_lh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_lh_use_corrcoeff_False.csv @@ -1,5 +1,7 @@ -1.0,0.39471258202865794 -1.25,0.4008688166784357 -1.5,0.412611934286404 -1.75,0.5248065031611584 -2.0,0.2547347828696828 +,0 +0.0,0.36669952180766113 +1.0,0.3975688366036228 +1.25,0.4009867711680793 +1.5,0.41138722954763524 +1.75,0.5268776039107825 +2.0,0.48486682324099917 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_lh_use_corrcoeff_True.csv b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_lh_use_corrcoeff_True.csv index a734c1b..bfebd71 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_lh_use_corrcoeff_True.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_lh_use_corrcoeff_True.csv @@ -1,5 +1,7 @@ -1.0,0.45062973784225685 -1.25,0.4553830258090757 -1.5,0.48066781671889786 -1.75,0.42168502615405035 -2.0,0.0834442430975742 +,0 +0.0,-0.08062430133898046 +1.0,0.42789763911239703 +1.25,0.46018053812877996 +1.5,0.4878563353942622 +1.75,0.4087915823984392 +2.0,0.32140593973294496 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_False.csv b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_False.csv index 734f962..ecbe3fe 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_False.csv @@ -1,5 +1,7 @@ -1.0,0.39580267616037823 -1.25,0.4026436332096207 -1.5,0.4151095201136285 -1.75,0.4956735947808254 -2.0,0.23493471586305403 +,0 +0.0,0.3666941331499342 +1.0,0.39919165774869053 +1.25,0.40279967500013036 +1.5,0.4136307603292828 +1.75,0.5008430043230755 +2.0,0.47017922001710116 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_True.csv b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_True.csv index 290f486..8ba7069 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_True.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/df_corr_rh_use_corrcoeff_True.csv @@ -1,5 +1,7 @@ -1.0,0.44548272698470576 -1.25,0.4612926870045051 -1.5,0.48617265296471707 -1.75,0.3996604072047156 -2.0,0.12065968795650235 +,0 +0.0,-0.06958164220567883 +1.0,0.44178427032935264 +1.25,0.466749796867104 +1.5,0.48909217106146025 +1.75,0.38522512251852864 +2.0,0.3095249960648688 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_cv.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_cv.npy index a897926..53a46b0 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_cv.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_cv.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_lvr.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_lvr.npy index 2bdf39e..49502c4 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_lvr.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_lvr.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_rates.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_rates.npy index 3f977ab..ef1f953 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_rates.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/exp_rates.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_cv_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_cv_arr.json index 4163032..8d804ce 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_cv_arr.json +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_cv_arr.json @@ -1 +1 @@ -{"1.5": 0.4075078566692465, "1.25": 0.41108070575878153, "1.0": 0.4138047462228829, "2.0": 0.4439099601819372, "1.75": 0.690044830086779} \ No newline at end of file +{"1.25": 0.41596892608224223, "1.5": 0.40204207759340427, "1.75": 0.6276572787946999, "1.0": 0.41141912177778106, "2.0": 0.8622085605014851, "0.0": 0.40148298431978835} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_lvr_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_lvr_arr.json index 6f8e44d..1feac0c 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_lvr_arr.json +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_lvr_arr.json @@ -1 +1 @@ -{"1.5": 0.39495340002673296, "1.25": 0.393968226715414, "1.0": 0.39243240916205724, "2.0": 0.8662365517415959, "1.75": 0.7974777551441637} \ No newline at end of file +{"1.25": 0.39425736549236234, "1.5": 0.39696908917762475, "1.75": 0.7284131246423777, "1.0": 0.3964171992013521, "2.0": 0.7635372227934134, "0.0": 0.3881183699894529} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_rates_arr.json b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_rates_arr.json index c8f17e9..d7e5436 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_rates_arr.json +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/ks_rates_arr.json @@ -1 +1 @@ -{"1.5": 0.9231253497192522, "1.25": 0.9234123775273747, "1.0": 0.923980968249118, "2.0": 0.5955962206155109, "1.75": 0.913408242300987} \ No newline at end of file +{"1.25": 0.9211845943074329, "1.5": 0.9212316276589426, "1.75": 0.9169386659114173, "1.0": 0.9170099472843647, "2.0": 0.8152730871214524, "0.0": 0.9105145317112092} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/path_to_chi.json b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/path_to_chi.json index 12dca22..48f2bc6 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/path_to_chi.json +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/path_to_chi.json @@ -1 +1 @@ -{"1.5": "08e8618517e6e057db688d6257680da6", "1.25": "35022b8c38368b83fb671cfc1087d83f", "1.0": "59cc1c6418e57a0cac22d007f9e0467b", "2.0": "7d86a0be95d45469743dffa2b2809b8a", "1.75": "dbbc477edceb3323b0883c89f8d7d955"} \ No newline at end of file +{"1.25": "34ab2aecbed4632dd49e311e523976d5", "1.5": "d7e63a0b8d4f4743a691a3096a225026", "1.75": "f358fd7d2844f0a6e3e806352af2fe2f", "1.0": "4dae448eb9c69ad3f2a71972667f3ee4", "2.0": "e1f0481943c7dd4937436abc3b0ba8ec", "0.0": "f6de3f7c02703fa1dde65ef14e61171b"} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_bestfit.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_bestfit.npy index cca2693..68c1500 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_bestfit.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_bestfit.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_groundstate.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_groundstate.npy index c15e9df..2d6a21f 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_groundstate.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_cv_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_bestfit.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_bestfit.npy index 2fc37b0..0e23c41 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_bestfit.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_bestfit.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_groundstate.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_groundstate.npy index d10e5d8..12bfa02 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_groundstate.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_lvr_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_bestfit.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_bestfit.npy index 73cdcd6..53fdfbe 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_bestfit.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_bestfit.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_groundstate.npy b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_groundstate.npy index 7c738c4..cbb2bc2 100644 Binary files a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_groundstate.npy and b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/sim_rates_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_bestfit.csv b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_bestfit.csv index 3050c58..ce49298 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_bestfit.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_bestfit.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal -bankssts,1.0,0.1971081788419546,0.29140636425333905,0.25920020024478446,0.24427685384210554,0.38225339686699317,0.5461884802913584,0.6276572986488248,0.665063368471788,0.6077568716869035,0.1628497228581159,0.4007182414507264,0.4634563817950367,0.24553532698085476,0.4264866793570891,0.8224413535247693,0.5539539263974357,0.3490986665264114,0.18414789686236324,0.5365351208783107,0.26800974659361315,0.23963747382343478,0.6242128271247911,0.2041867015495389,0.4392382765329814,0.2894069635874698,0.2110239919742447,0.43706314491053544,0.38243428076022973,0.4821098491124634,0.7956162794118155,0.7122390235737021,0.527234454220613,0.7159427278889784 -caudalanteriorcingulate,0.1971081788419546,1.0,0.09984923628885305,0.13306166246288728,0.8179617545486099,0.2188317547043474,0.2579664505300496,0.2389378276027858,0.25825403442431444,0.2967712326603441,0.58589724290061,0.17421478824667794,0.29520636123275945,0.11222691306285343,0.2965734899893439,0.2828685745318191,0.4018418894502632,0.6754425366209285,0.10579155325549218,0.33892804739629734,0.1681973417205085,0.1119069029128707,0.2075657139040724,0.8665192636499265,0.10729142351387233,0.4751979112279008,0.960396017775941,0.22822996695679656,0.3577726997706367,0.2442502829683538,0.3051717217134747,0.2004589635966128,0.37772519888363687,0.23914916576944542 -caudalmiddlefrontal,0.29140636425333905,0.09984923628885305,1.0,0.17025514902107433,0.04944208789791546,0.46201232656000685,0.15830837465137987,0.3784302299990613,0.1711981899037632,0.4354052126969347,0.06194561576178705,0.20431064327394863,0.3396794415732043,0.14968973370459646,0.3578098369942562,0.2974304188476464,0.44927573691378586,0.11652717126219828,0.7596783462826592,0.35548612747319136,0.664917701735048,0.1628935326792991,0.31915790927942334,0.09617805041951848,0.8044915128055632,0.19838004071541968,0.1307310110888031,0.7345806602052846,0.7611552890052259,0.355995556112692,0.41369763464705156,0.3879696775323132,0.20519860204157758,0.37711848056633296 -cuneus,0.25920020024478446,0.13306166246288728,0.17025514902107433,1.0,0.20422116943781277,0.22232226613208556,0.4961543701595272,0.34683014595481637,0.24992452731790232,0.355450474820631,0.26939685534693125,0.9023208335858289,0.376688269223575,0.8674315659749745,0.23564840176693014,0.2769926671063517,0.4689053689494709,0.47874270726586754,0.08655394756774464,0.3853226884998505,0.15366758024107202,0.9391756289108257,0.31968871737496174,0.19310983883426405,0.23741206492942385,0.4806636971118698,0.14642246890560945,0.27860359334451,0.2432607253452224,0.4586309670426167,0.3586520948688015,0.31083588191384354,0.2570886854036263,0.3190956383555456 -entorhinal,0.24427685384210554,0.8179617545486099,0.04944208789791546,0.20422116943781277,1.0,0.203567021847963,0.4171462902464062,0.26149993117413534,0.31511073817579577,0.33698087816747385,0.7167712740656795,0.27449707323966205,0.3365140105087376,0.18603097613208636,0.2994999657664254,0.3162600543702062,0.4279134440220489,0.8496058723819061,0.02291711615611406,0.389933032345904,0.09759960648072825,0.18895662202749325,0.24494608196446702,0.6763987817825972,0.09643131347415762,0.48532016963333247,0.8294136503551073,0.18729056815815165,0.2811822090928965,0.3060267906847169,0.361626090108671,0.24135976446228127,0.45295416973299046,0.2921852034090207 -frontalpole,0.38225339686699317,0.2188317547043474,0.46201232656000685,0.22232226613208556,0.203567021847963,1.0,0.34247604386751124,0.45959382136156895,0.38903161966444977,0.6482313107692768,0.20597586417466285,0.3212436525136638,0.7188195684474572,0.20463065396600585,0.8057206316463066,0.4526011794987546,0.4621347319532668,0.2747706686976014,0.5040862555965354,0.6530180350081377,0.6107616208458885,0.21843111734788762,0.3466312934948179,0.23086496664055534,0.4027829325850063,0.27864771606378136,0.2702729084879542,0.8082088919551872,0.7174513174766177,0.4276453952959963,0.5495987626922374,0.37600206572001443,0.5464087942096566,0.44736426122479767 -fusiform,0.5461884802913584,0.2579664505300496,0.15830837465137987,0.4961543701595272,0.4171462902464062,0.34247604386751124,1.0,0.5453566444835882,0.7518897491087391,0.5715765942120188,0.2674507416550682,0.6810823287093128,0.5461878607154331,0.5463682469346486,0.44165795841536487,0.6836011420431515,0.5428114783191009,0.6730321269778475,0.07711962606502137,0.6703849014166291,0.19923644410676247,0.5064491544720975,0.46228183450679516,0.26496623758594745,0.25889937846953165,0.4236315343426856,0.27952866939964627,0.378370413751492,0.307023699831442,0.5242076073600975,0.647117669125204,0.44788714253452044,0.68326122555523,0.4799692168095336 -inferiorparietal,0.6276572986488248,0.2389378276027858,0.3784302299990613,0.34683014595481637,0.26149993117413534,0.45959382136156895,0.5453566444835882,1.0,0.6161677457682705,0.728447084821942,0.22194243994020962,0.4966864755363495,0.6006402223625876,0.29502603865567195,0.49741253149928993,0.7341167510922434,0.6721734184492695,0.39209710639706025,0.3063194217183419,0.6973747848762627,0.43300107601346866,0.3114847803092527,0.5636450867089882,0.26721601713268844,0.427733972060503,0.43888945004659474,0.27106132970818547,0.5919041703772419,0.5058170094905233,0.725881181113548,0.7686220192632038,0.5816679114209086,0.5597331931268577,0.6231263504158289 -inferiortemporal,0.665063368471788,0.25825403442431444,0.1711981899037632,0.24992452731790232,0.31511073817579577,0.38903161966444977,0.7518897491087391,0.6161677457682705,1.0,0.5759605497348169,0.2051264866995258,0.43745145661187995,0.5189441026696393,0.24923672694959145,0.48831750530366547,0.918625166008174,0.47559289514039454,0.4254661217931036,0.11560799256991773,0.6676813786064801,0.24862258728597625,0.2374429978036303,0.43282306419865096,0.26647210620232753,0.2414077034202743,0.31448526783165925,0.27890363825431685,0.4122660999254985,0.3099789326785217,0.43434850135599395,0.6891781661740792,0.4176097388930111,0.7671034778630327,0.4375927733522989 -insula,0.6077568716869035,0.2967712326603441,0.4354052126969347,0.355450474820631,0.33698087816747385,0.6482313107692768,0.5715765942120188,0.728447084821942,0.5759605497348169,1.0,0.2528921548813632,0.48852763292004286,0.8501551284018635,0.3017130723809848,0.7949715706408588,0.6953224926480375,0.7245074179048125,0.44304941906621226,0.37209516542149185,0.8698545741872631,0.5400738021173608,0.31204501072307056,0.6801366385343888,0.29686916101865585,0.5201945667158775,0.44405945487941445,0.35718231728187855,0.7047680033147916,0.6248994316349832,0.716008071847206,0.8847108945100652,0.6745367543868835,0.7989306179963732,0.7388873011038124 -isthmuscingulate,0.1628497228581159,0.58589724290061,0.06194561576178705,0.26939685534693125,0.7167712740656795,0.20597586417466285,0.2674507416550682,0.22194243994020962,0.2051264866995258,0.2528921548813632,1.0,0.2728143521978154,0.26378105101797245,0.20801680842988135,0.22113410311324425,0.21314619788924632,0.5276353428431746,0.6511284386800966,0.049899973179387616,0.26069703974073477,0.1027972483222129,0.24287113179594508,0.17463771739890138,0.6555107879628117,0.08603045736029807,0.5881857642966783,0.5916877377068851,0.17919979295195712,0.2614769062034388,0.27355336044966444,0.2563164118022751,0.16229922411530964,0.28091092193462247,0.214173585671223 -lateraloccipital,0.4007182414507264,0.17421478824667794,0.20431064327394863,0.9023208335858289,0.27449707323966205,0.3212436525136638,0.6810823287093128,0.4966864755363495,0.43745145661187995,0.48852763292004286,0.2728143521978154,1.0,0.5027616725810207,0.8819624356384077,0.35200106709390283,0.4579012258318369,0.5587543108404492,0.5921597823591145,0.11858103491183451,0.5466890590759247,0.21562861466536706,0.9176414343425074,0.4159422557203122,0.22448257038044736,0.28936132949339866,0.5276651968867672,0.1953428093373152,0.3818312000652686,0.3179407182594881,0.5604905796389125,0.5137133483332881,0.4089800847442526,0.41714751128301236,0.42918007830660243 -lateralorbitofrontal,0.4634563817950367,0.29520636123275945,0.3396794415732043,0.376688269223575,0.3365140105087376,0.7188195684474572,0.5461878607154331,0.6006402223625876,0.5189441026696393,0.8501551284018635,0.26378105101797245,0.5027616725810207,1.0,0.3553577873323116,0.9026618836429418,0.5781342831438752,0.5572973322868584,0.4651832624892444,0.340299517107883,0.8902964498978763,0.5353029377400343,0.3548208175205602,0.475250212883054,0.30987316938347453,0.37518332061144116,0.3800372715120096,0.35643506096001787,0.6801085689678923,0.5542540322550442,0.5603364975694862,0.7087494351533044,0.4840753797128924,0.8066927573604238,0.5589872116657839 -lingual,0.24553532698085476,0.11222691306285343,0.14968973370459646,0.8674315659749745,0.18603097613208636,0.20463065396600585,0.5463682469346486,0.29502603865567195,0.24923672694959145,0.3017130723809848,0.20801680842988135,0.8819624356384077,0.3553577873323116,1.0,0.2114156750250499,0.2610728819987492,0.3843097598721381,0.4972433342841811,0.06999274127329395,0.37056465923518056,0.12866087665098627,0.8998006143181354,0.26494101508020573,0.1502587838442843,0.19485277294931141,0.40153675882185946,0.12069056784732712,0.24907092134586858,0.2037101134733676,0.3866447168399219,0.3197164938278634,0.26539684719045376,0.2344460776108479,0.2898720141705592 -medialorbitofrontal,0.4264866793570891,0.2965734899893439,0.3578098369942562,0.23564840176693014,0.2994999657664254,0.8057206316463066,0.44165795841536487,0.49741253149928993,0.48831750530366547,0.7949715706408588,0.22113410311324425,0.35200106709390283,0.9026618836429418,0.2114156750250499,1.0,0.5384593251841879,0.4777775109736133,0.3542244296271427,0.3998458139129111,0.8721924039446788,0.5730705100919483,0.21752305328589883,0.4045735888787948,0.29254805361741576,0.3574614067584987,0.2928525235363444,0.3635371048792303,0.7184886758292113,0.6099837192942295,0.4404054371744677,0.6541649973622006,0.41964124266201425,0.8153978776503448,0.520291778380241 -middletemporal,0.8224413535247693,0.2828685745318191,0.2974304188476464,0.2769926671063517,0.3162600543702062,0.4526011794987546,0.6836011420431515,0.7341167510922434,0.918625166008174,0.6953224926480375,0.21314619788924632,0.4579012258318369,0.5781342831438752,0.2610728819987492,0.5384593251841879,1.0,0.6013433056676344,0.42969595608531896,0.20108644990501062,0.696892931507228,0.32390982623389647,0.254615495661404,0.5795955670488224,0.2872968566967455,0.3966983244355325,0.3549967246459564,0.30598867513641104,0.5077958062479453,0.42169398234500965,0.5417610483019473,0.8551642197079193,0.6203935215706311,0.7360851212481377,0.6525416848409523 -paracentral,0.5539539263974357,0.4018418894502632,0.44927573691378586,0.4689053689494709,0.4279134440220489,0.4621347319532668,0.5428114783191009,0.6721734184492695,0.47559289514039454,0.7245074179048125,0.5276353428431746,0.5587543108404492,0.5572973322868584,0.3843097598721381,0.4777775109736133,0.6013433056676344,1.0,0.5804627586147154,0.331533663024429,0.6120873945886276,0.4103331888821866,0.4247034687041998,0.6672174268477656,0.5044540138896193,0.5410522612772042,0.7007481602287158,0.41974625847875485,0.5857741508170953,0.6111831503619573,0.722811283744813,0.7657638107460277,0.6534147132669087,0.5088598743851802,0.6666538558277119 -parahippocampal,0.3490986665264114,0.6754425366209285,0.11652717126219828,0.47874270726586754,0.8496058723819061,0.2747706686976014,0.6730321269778475,0.39209710639706025,0.4254661217931036,0.44304941906621226,0.6511284386800966,0.5921597823591145,0.4651832624892444,0.4972433342841811,0.3542244296271427,0.42969595608531896,0.5804627586147154,1.0,0.054339174621100425,0.525690651872817,0.15038613467586634,0.4837408959643396,0.3492335582123946,0.6337294434010059,0.18172635131765102,0.5755505043535663,0.673223431265599,0.2847948988153029,0.330404632864591,0.451177317235605,0.48595395950770864,0.3481512809072176,0.5076380252719879,0.39724228556803054 -parsopercularis,0.18414789686236324,0.10579155325549218,0.7596783462826592,0.08655394756774464,0.02291711615611406,0.5040862555965354,0.07711962606502137,0.3063194217183419,0.11560799256991773,0.37209516542149185,0.049899973179387616,0.11858103491183451,0.340299517107883,0.06999274127329395,0.3998458139129111,0.20108644990501062,0.331533663024429,0.054339174621100425,1.0,0.36922528743728467,0.9225289512871951,0.08634898079263138,0.1419792164315354,0.1095307777845101,0.5509563712141832,0.1493589393393112,0.13978292939086387,0.7885914243435973,0.8007272464577133,0.260713815613999,0.2839363528706824,0.20958625462599445,0.18986600845743443,0.260369795493514 -parsorbitalis,0.5365351208783107,0.33892804739629734,0.35548612747319136,0.3853226884998505,0.389933032345904,0.6530180350081377,0.6703849014166291,0.6973747848762627,0.6676813786064801,0.8698545741872631,0.26069703974073477,0.5466890590759247,0.8902964498978763,0.37056465923518056,0.8721924039446788,0.696892931507228,0.6120873945886276,0.525690651872817,0.36922528743728467,1.0,0.5692529380797248,0.3639898229257221,0.5144393035598627,0.33258297522095204,0.3927109190679934,0.4207290598887624,0.405390960767536,0.7078630015009261,0.5819616265863888,0.6164823582431717,0.7793729203699866,0.5043406688601195,0.9109208441854336,0.5976709339753749 -parstriangularis,0.26800974659361315,0.1681973417205085,0.664917701735048,0.15366758024107202,0.09759960648072825,0.6107616208458885,0.19923644410676247,0.43300107601346866,0.24862258728597625,0.5400738021173608,0.1027972483222129,0.21562861466536706,0.5353029377400343,0.12866087665098627,0.5730705100919483,0.32390982623389647,0.4103331888821866,0.15038613467586634,0.9225289512871951,0.5692529380797248,1.0,0.14544671501342832,0.22709992775545138,0.18237847643535138,0.497684595418662,0.21792727007577495,0.21108468196558722,0.8600125644796336,0.8029631160196506,0.35896106439527736,0.40752900887652027,0.2804752402066031,0.3809931185492262,0.3415387846836498 -pericalcarine,0.23963747382343478,0.1119069029128707,0.1628935326792991,0.9391756289108257,0.18895662202749325,0.21843111734788762,0.5064491544720975,0.3114847803092527,0.2374429978036303,0.31204501072307056,0.24287113179594508,0.9176414343425074,0.3548208175205602,0.8998006143181354,0.21752305328589883,0.254615495661404,0.4247034687041998,0.4837408959643396,0.08634898079263138,0.3639898229257221,0.14544671501342832,1.0,0.27881941211459804,0.17198819316898387,0.2217040762615117,0.4478782931202907,0.12157085056823992,0.26966600234983606,0.22724446085443947,0.40979485365397983,0.3199299851687793,0.2732285456659619,0.2293797609234999,0.28686522103125117 -postcentral,0.6242128271247911,0.2075657139040724,0.31915790927942334,0.31968871737496174,0.24494608196446702,0.3466312934948179,0.46228183450679516,0.5636450867089882,0.43282306419865096,0.6801366385343888,0.17463771739890138,0.4159422557203122,0.475250212883054,0.26494101508020573,0.4045735888787948,0.5795955670488224,0.6672174268477656,0.3492335582123946,0.1419792164315354,0.5144393035598627,0.22709992775545138,0.27881941211459804,1.0,0.20848306494689628,0.6289998584434309,0.31614066606758434,0.23254525191284212,0.4469143537773071,0.40174435103257844,0.5849950763906513,0.7444538772448546,0.7979284944711647,0.45626959332455064,0.6930219860999679 -posteriorcingulate,0.2041867015495389,0.8665192636499265,0.09617805041951848,0.19310983883426405,0.6763987817825972,0.23086496664055534,0.26496623758594745,0.26721601713268844,0.26647210620232753,0.29686916101865585,0.6555107879628117,0.22448257038044736,0.30987316938347453,0.1502587838442843,0.29254805361741576,0.2872968566967455,0.5044540138896193,0.6337294434010059,0.1095307777845101,0.33258297522095204,0.18237847643535138,0.17198819316898387,0.20848306494689628,1.0,0.10956736664095477,0.5180792480543751,0.8016268679946692,0.23508981122750142,0.3327039278580139,0.24258066581580176,0.2977366477284212,0.20296062553672195,0.3482518894368833,0.22849951490049641 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+transversetemporal,0.8210458240349168,0.1383338089045025,0.2516874641633219,0.27834758206407645,0.19762478191349706,0.32138656050391645,0.4039384482398213,0.5266787613958152,0.4176430657743748,0.7069704615553347,0.12420881490899252,0.37444590844750403,0.512930614437842,0.23542809421550276,0.4643350875818918,0.6233323470591522,0.5404770755157737,0.2912310165238404,0.1329821965137225,0.5374186921274233,0.14939159856196108,0.2475789854591877,0.6312214841940903,0.12939394304900484,0.45191803876192344,0.2788760333999129,0.17633262874250552,0.40691739208968847,0.3923555875058402,0.5351337719380247,0.8635332272561996,0.7611843860246714,0.47905780122250685,1.0 diff --git a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_groundstate.csv b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_groundstate.csv index f03f74c..65d92ae 100644 --- a/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_groundstate.csv +++ b/simulated_data/scaling_experiment_lichtman_chii2_smaller_g/simulated_fc_groundstate.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal -bankssts,1.0,0.01833390956016188,0.028779660022448854,0.024174073103753097,0.008765898824097219,-0.002810650884268653,0.03597580138279759,0.07373614138390024,0.0506764437753173,0.0066491322352143145,-0.017981498632706195,0.02136167141245999,-0.0242497739383269,0.010789201307795778,0.00044806628250475733,0.16503282556211993,0.03768714000524412,0.023070332247146195,0.030141354278524043,-0.009903059649475937,-0.03947254774308927,-0.01019465603082587,0.01629970612954531,-0.022162641744111134,0.0012785281490219661,-0.00082591279247435,0.02467408629185861,0.03525509277399497,0.016068406760900312,0.04299612277519848,0.11404443518001067,0.10687222073654118,0.023513186649686182,0.032766190052898714 -caudalanteriorcingulate,0.01833390956016188,1.0,-0.002533045883338621,-0.00818161192544738,-0.03586603856658748,0.02129585488359328,-0.011849905415489938,-0.004313033307301459,0.00033622955027620964,-0.005930988533438661,-0.015473792555311451,0.0033066775909613914,0.025132659932988615,-0.0032235207706206087,-0.001326119377166432,-0.007826698191249625,0.0022493274018652795,-0.019873286612580976,-0.0017201228295872749,0.010837238785506248,0.0035290871103200432,0.013485538846699846,-0.03634154159026602,0.0743173475021432,-0.018658784112117372,0.03705709954297879,0.09823274292855179,0.02569337563312466,0.08476545592796374,-0.0020634827810836536,0.0034442400688228054,-0.0041431385091699685,-0.019671311669435976,0.015981798520327918 -caudalmiddlefrontal,0.028779660022448854,-0.002533045883338621,1.0,0.0010052175899856236,0.011888326979615374,0.04656807272538316,0.023321911621998336,0.018059441706324703,0.03156717658328866,0.009675473305828497,-0.006258181161898564,0.04574445287004988,0.0035528229054630346,0.0050516604932955315,0.02261546110273485,0.03258447225623403,0.02372226908978309,-0.021743995411209544,0.05752681107392326,0.03229270467148169,0.01575955089898543,-0.0016128082532651945,0.022136069674314893,0.006476774521221134,0.09573656672418705,-0.0033889438427883575,0.0181900761153214,0.13952825774853586,0.11434508666325024,0.026176130861407514,-0.009952759603562896,0.01173013740063101,-0.01327591944460409,-0.02437806454966842 -cuneus,0.024174073103753097,-0.00818161192544738,0.0010052175899856236,1.0,-0.005411276688959979,-0.011297925637019951,0.0009413006891010312,0.045700472435874474,-0.009408503817946117,-0.06643085756424598,0.017949066971596518,0.1040821855432395,0.01673001858887889,0.20271277859849746,-0.018623978531854712,-0.012676125722035634,0.01891848922164892,-0.013848632598415775,-1.3778882621616186e-05,-0.02002187889680687,-0.02477463198015546,0.5817122933990742,0.01030826040248548,0.006152257166032566,-0.003469337223286907,0.08292648756814909,-0.00726301986485175,0.012339362525879735,-0.016877825588138422,0.10587852485501387,0.03359194890273012,-0.0007307436944215381,0.03311514743564753,0.04275463793249696 -entorhinal,0.008765898824097219,-0.03586603856658748,0.011888326979615374,-0.005411276688959979,1.0,0.012592606291299796,0.007910555376742208,0.021406184015013163,-0.0007903577849590982,-0.013356066792604124,0.036411972740795946,-0.003240723033790142,0.008861385210683772,0.0373826041698055,-0.00015289412695347498,0.023197399830639873,-0.006440145876191123,0.17430976545691562,-0.027439668943765726,-0.00882975314661517,-0.01441101051372092,0.008395342040980922,-0.015083928694484135,-0.029617690737464727,0.004187309134652388,-0.0023265111728133763,-0.01724283953224138,0.014089721198090698,-0.028370291268463594,-0.004486075402951715,-0.00364451752346524,-0.005273700462089347,0.08022481598472665,-0.012088934938302933 -frontalpole,-0.002810650884268653,0.02129585488359328,0.04656807272538316,-0.011297925637019951,0.012592606291299796,1.0,-0.0003195078760068218,-0.017012215463928233,0.019390861003418212,0.038199774675405244,-0.03177884806562494,0.00495033149030658,0.0195410655054469,0.005102087143649381,0.2184175742293354,0.022817731950268292,-0.020615307667880684,0.0034607552295618346,0.034636411269378345,0.001870759792187567,0.007903249299893913,-0.01076801873659102,0.027898631664404337,-0.026099669857034533,-0.015470198592529925,-0.041256439859085774,0.020288703965889103,0.0950405019357738,0.0015533331980037706,-0.043776413491669997,0.006157218988244456,-0.02017342544578186,0.012781960776275799,-0.07263918524500254 -fusiform,0.03597580138279759,-0.011849905415489938,0.023321911621998336,0.0009413006891010312,0.007910555376742208,-0.0003195078760068218,1.0,0.03650581950079524,0.16450451123038415,-0.021690437906546116,-0.02487279586572733,0.14595248223775467,0.0033125221429471286,0.06086262542237831,-0.010320704217230067,0.043024034079676664,0.0006735757959371727,0.19070602403707396,0.01413838428409349,-0.005196767105515468,0.014984513608481827,-0.004456096071047756,0.017725044201986045,0.020779564825529985,-0.028019485008913853,0.03343744967460528,-0.004206321241790524,-0.006130093905596297,0.007072546351812815,0.023285010546889348,0.015508367675659836,0.028381191972091473,0.03940473500414242,-0.006592638653277761 -inferiorparietal,0.07373614138390024,-0.004313033307301459,0.018059441706324703,0.045700472435874474,0.021406184015013163,-0.017012215463928233,0.03650581950079524,1.0,0.07200972224784029,0.00821923314130354,0.021150217053252998,0.09460416257525513,0.022736198514127972,0.013700321834621568,0.013388910012012355,0.10531158474078645,-0.013934287872649217,0.02366691983581889,0.009528083323747563,0.016364916881523132,0.0036451604662987953,0.000469004499402603,0.0645388899105692,0.005280599005721873,0.06094396008122382,0.05014980247927774,0.0015784048431367445,0.028415773134539687,-0.0003380093558504002,0.10931223211282712,0.052140792957291925,0.13646389807299572,-0.010317593631773104,-0.011942180593792462 -inferiortemporal,0.0506764437753173,0.00033622955027620964,0.03156717658328866,-0.009408503817946117,-0.0007903577849590982,0.019390861003418212,0.16450451123038415,0.07200972224784029,1.0,-0.027458747577473006,0.012857113387068875,0.0979201652750175,0.0023264482266420155,-0.001662062841858172,0.014553252682655693,0.21160458493123183,0.010027595406506006,0.053998004243804396,-0.00013857978276030485,0.027101302688789557,0.022820317136675906,-0.026938291836828433,0.025772175800644608,0.0204424423191431,-0.004405134088288091,0.012008180416415227,0.016718766278046922,0.03152375060783,-0.007614786685079336,-0.014029258390106235,0.0416179787381934,0.015178587867259476,-0.00515402233428514,-0.0084113967748335 -insula,0.0066491322352143145,-0.005930988533438661,0.009675473305828497,-0.06643085756424598,-0.013356066792604124,0.038199774675405244,-0.021690437906546116,0.00821923314130354,-0.027458747577473006,1.0,-0.012214226159160029,0.02656860147894856,0.06326684485869584,-0.044569461462136174,0.039873475276765304,0.01792355525555674,-0.018913946771392787,-0.021049338679028445,0.030574661998399713,0.05830690541183426,0.03930218588536927,-0.059593405187959525,-0.02496488377571808,0.03257143076061208,-0.03171714621345584,-0.00543824043196887,0.03624103112571968,0.003263568152565499,0.013026982981094191,0.08163201501403292,0.08066955466614809,0.040505305707523656,0.12178839926687539,0.09183543844818098 -isthmuscingulate,-0.017981498632706195,-0.015473792555311451,-0.006258181161898564,0.017949066971596518,0.036411972740795946,-0.03177884806562494,-0.02487279586572733,0.021150217053252998,0.012857113387068875,-0.012214226159160029,1.0,0.00966748818768906,-0.016042260111810026,0.05828138596384979,0.028184126903818982,0.022613855927179894,0.028971931022825324,0.026993463950080985,-0.02297410745770978,0.01749675729270983,0.024462429870008556,-0.021363490045197397,0.03799492887135408,0.05177260547302192,0.005108143726930867,0.16946153382034662,-0.03427358765614605,0.002633708390548954,-0.028362846259895793,0.029025362465044658,-0.0011798576270627226,0.03416151631296468,0.007197040468827895,-0.034663468184423174 -lateraloccipital,0.02136167141245999,0.0033066775909613914,0.04574445287004988,0.1040821855432395,-0.003240723033790142,0.00495033149030658,0.14595248223775467,0.09460416257525513,0.0979201652750175,0.02656860147894856,0.00966748818768906,1.0,0.027605448339029743,0.10204327497251527,0.003658098076354771,0.04566744766553621,-0.00038400599303008756,0.056134710054332966,0.05336024462690816,0.010459893164157477,0.03520167356255421,0.06640290994717636,0.01374701438202712,0.005010109982676257,-0.002606489705224648,0.033913281505036606,0.018896922882184634,0.03438767764913295,-0.009937442493363879,0.06995724954184529,0.015047183110806918,-0.010266973445731508,0.029894454131154637,0.014970038414567751 -lateralorbitofrontal,-0.0242497739383269,0.025132659932988615,0.0035528229054630346,0.01673001858887889,0.008861385210683772,0.0195410655054469,0.0033125221429471286,0.022736198514127972,0.0023264482266420155,0.06326684485869584,-0.016042260111810026,0.027605448339029743,1.0,-0.013001098992190124,0.14653004818036355,0.0029981213789220776,0.012278482567525529,0.007127971378310777,0.0008863067923789779,0.05659918656784927,-0.0037992480643911346,0.021284862468551623,0.02259897275945773,-0.008265539609493541,-0.06204740138449481,0.005432973480823276,0.029313543802565453,0.01580717566530804,0.010163501313063494,0.016658236851206064,-0.0008381149380023638,-0.03801334901614331,0.06393169643344687,-0.0013887247680115006 -lingual,0.010789201307795778,-0.0032235207706206087,0.0050516604932955315,0.20271277859849746,0.0373826041698055,0.005102087143649381,0.06086262542237831,0.013700321834621568,-0.001662062841858172,-0.044569461462136174,0.05828138596384979,0.10204327497251527,-0.013001098992190124,1.0,-0.001666457425529141,0.0069595718469776125,0.021659782167983335,0.1138814855246851,-0.030983036149701354,-0.0004239454774812506,-0.026804648604254265,0.3107942962904962,0.00801198545195275,0.054429103935338174,0.009825141211530202,0.10776012254852647,-0.007075161095946261,0.0035977394084342287,-0.03250747632918142,0.07027270941053956,-0.002706864676289171,-0.0027644360773861755,0.028875025767021528,0.01541616724482552 -medialorbitofrontal,0.00044806628250475733,-0.001326119377166432,0.02261546110273485,-0.018623978531854712,-0.00015289412695347498,0.2184175742293354,-0.010320704217230067,0.013388910012012355,0.014553252682655693,0.039873475276765304,0.028184126903818982,0.003658098076354771,0.14653004818036355,-0.001666457425529141,1.0,-0.021854067832812202,0.059409855378194015,-0.005554734314410207,0.022659548349740672,0.026468392769784608,0.016874738930416543,-0.003726695685478779,0.039897566526907194,-0.012255047873571779,-0.007857231039806047,0.024443473831981075,0.0966108133652171,0.04947596216805005,0.004101040817005757,-0.0027718033528015737,0.027449567059114437,-0.011570776488169286,0.08982072849533487,-0.02342332968723478 -middletemporal,0.16503282556211993,-0.007826698191249625,0.03258447225623403,-0.012676125722035634,0.023197399830639873,0.022817731950268292,0.043024034079676664,0.10531158474078645,0.21160458493123183,0.01792355525555674,0.022613855927179894,0.04566744766553621,0.0029981213789220776,0.0069595718469776125,-0.021854067832812202,1.0,0.022475840990293455,0.027396214741365676,-0.009412589076419748,0.012787962231000123,-0.0009948472588081744,-0.02689135044052715,0.010504469929274899,-0.021146127190229364,0.02447928955349789,0.03856940244888035,-0.0054909927787584025,0.0016806563882523753,-0.0226476075118595,0.02578492594715745,0.07466514217459584,0.037514998552011174,0.017439113942070802,-0.04133269885246149 -paracentral,0.03768714000524412,0.0022493274018652795,0.02372226908978309,0.01891848922164892,-0.006440145876191123,-0.020615307667880684,0.0006735757959371727,-0.013934287872649217,0.010027595406506006,-0.018913946771392787,0.028971931022825324,-0.00038400599303008756,0.012278482567525529,0.021659782167983335,0.059409855378194015,0.022475840990293455,1.0,0.02090713724659678,-0.028817069810579958,0.03622106574209665,-0.018553655079699284,-0.03741141288987793,0.07509587673688346,0.07151600040392223,0.010483947237700216,0.09599380994016882,0.004704090634032258,0.05248928670030205,0.013167776082435904,0.0456501813302778,-0.016331306463856818,-0.03532744686202798,0.048137423618948315,-0.02928992873314157 -parahippocampal,0.023070332247146195,-0.019873286612580976,-0.021743995411209544,-0.013848632598415775,0.17430976545691562,0.0034607552295618346,0.19070602403707396,0.02366691983581889,0.053998004243804396,-0.021049338679028445,0.026993463950080985,0.056134710054332966,0.007127971378310777,0.1138814855246851,-0.005554734314410207,0.027396214741365676,0.02090713724659678,1.0,0.006954143860723059,-0.01224142746083937,-0.04552101231829874,-0.016411031894199738,-0.005166520987560468,0.04037485534016303,-0.022037809931364782,0.060999331367695774,0.008589305014321542,0.00828671274712708,0.0149385462506639,0.006895787857430635,0.00033419395083133537,-0.01445976580699667,0.04487014419128752,0.0037776475432964676 -parsopercularis,0.030141354278524043,-0.0017201228295872749,0.05752681107392326,-1.3778882621616186e-05,-0.027439668943765726,0.034636411269378345,0.01413838428409349,0.009528083323747563,-0.00013857978276030485,0.030574661998399713,-0.02297410745770978,0.05336024462690816,0.0008863067923789779,-0.030983036149701354,0.022659548349740672,-0.009412589076419748,-0.028817069810579958,0.006954143860723059,1.0,-0.0134097979667962,0.1333601050283572,-0.009720771011340845,0.007652646363051609,0.007078943113131859,0.005769359137695762,-0.03407729524784111,0.026804811378337193,0.056642797956245154,0.04778777105216759,-0.004101656593169588,0.011143070782070205,0.013344039260996093,0.013141940388846847,-0.01299819816374411 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a/simulated_data/scaling_experiment_lower_e_to_i/df_corr_lh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lower_e_to_i/df_corr_lh_use_corrcoeff_False.csv @@ -1,12 +1,14 @@ -1.0,0.38620784078539744 -1.5,0.41321654701055227 -1.6,0.4245819432261755 -1.7,0.4433285237801855 -1.8,0.45597155557921176 -1.9,0.4747349936301895 -2.0,0.5464969653194423 -2.2,0.5281138128002456 -2.4,0.541428143157813 -2.6,0.5321897058942964 -2.8,0.5195340531688815 -3.0,0.5265025985528275 +,0 +0.0,0.3663704873489214 +1.0,0.38388123593178286 +1.5,0.40897826409879406 +1.6,0.4145276947287659 +1.7,0.42377526870132565 +1.8,0.4372352887936865 +1.9,0.46017813132583524 +2.0,0.5742376494961015 +2.2,0.5288787796360478 +2.4,0.5576627070401582 +2.6,0.5119725998016464 +2.8,0.5149514820324448 +3.0,0.524595933405724 diff --git a/simulated_data/scaling_experiment_lower_e_to_i/df_corr_lh_use_corrcoeff_True.csv b/simulated_data/scaling_experiment_lower_e_to_i/df_corr_lh_use_corrcoeff_True.csv index 890f36b..c548071 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/df_corr_lh_use_corrcoeff_True.csv +++ b/simulated_data/scaling_experiment_lower_e_to_i/df_corr_lh_use_corrcoeff_True.csv @@ -1,12 +1,14 @@ -1.0,0.4413555468070685 -1.5,0.4329628431637365 -1.6,0.4678099802286272 -1.7,0.4669749224734702 -1.8,0.4916564305733388 -1.9,0.46565084329008777 -2.0,0.2887830700763766 -2.2,0.3369441886821325 -2.4,0.46053065861648246 -2.6,0.48135845491926504 -2.8,0.5131956232444717 -3.0,0.48145953074142395 +,0 +0.0,-0.025178111854487897 +1.0,0.3851137305227585 +1.5,0.43066244699535766 +1.6,0.44363030708803136 +1.7,0.4684052145795945 +1.8,0.46865711875041294 +1.9,0.4657032133281434 +2.0,0.32551511520395326 +2.2,0.3192829327714911 +2.4,0.40229164068792994 +2.6,0.4636993037337811 +2.8,0.46378640213619077 +3.0,0.48639873282985197 diff --git a/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_False.csv b/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_False.csv index ef720eb..3f09a6b 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_False.csv +++ b/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_False.csv @@ -1,12 +1,14 @@ -1.0,0.38695239045694374 -1.5,0.41576115041922035 -1.6,0.42739989698902 -1.7,0.44729039696931416 -1.8,0.45989919510593336 -1.9,0.48068903575491195 -2.0,0.5469951231257231 -2.2,0.5320187358176808 -2.4,0.5468724478047201 -2.6,0.5394325752857708 -2.8,0.5245695284084044 -3.0,0.5316878148056249 +,0 +0.0,0.3663039242206856 +1.0,0.38455845232501523 +1.5,0.4109258857226643 +1.6,0.41668541239332507 +1.7,0.4272247727556484 +1.8,0.44140064579171706 +1.9,0.46519733790481793 +2.0,0.5662880587752386 +2.2,0.5320251725856606 +2.4,0.563275901944715 +2.6,0.5188776063065875 +2.8,0.5188168020479856 +3.0,0.5321360591450431 diff --git a/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_True.csv b/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_True.csv index fc9bb88..c40b5bd 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_True.csv +++ b/simulated_data/scaling_experiment_lower_e_to_i/df_corr_rh_use_corrcoeff_True.csv @@ -1,12 +1,14 @@ -1.0,0.4361671388349314 -1.5,0.455137753352816 -1.6,0.48771582445807093 -1.7,0.49156428906182165 -1.8,0.5062633902055846 -1.9,0.4952635938239662 -2.0,0.3333078483425229 -2.2,0.369937103669352 -2.4,0.48503961148142677 -2.6,0.5114689041638507 -2.8,0.5261053860017995 -3.0,0.49995593562711094 +,0 +0.0,-0.026804189627567813 +1.0,0.3841931160326051 +1.5,0.4446006599918143 +1.6,0.45530092425209506 +1.7,0.4947738906692365 +1.8,0.49533648709759986 +1.9,0.4915846360719779 +2.0,0.3496612274468588 +2.2,0.35281088414459955 +2.4,0.4396789849553515 +2.6,0.4936315938642033 +2.8,0.4755620601908176 +3.0,0.5187039240140174 diff --git a/simulated_data/scaling_experiment_lower_e_to_i/exp_cv.npy b/simulated_data/scaling_experiment_lower_e_to_i/exp_cv.npy index a897926..53a46b0 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/exp_cv.npy and b/simulated_data/scaling_experiment_lower_e_to_i/exp_cv.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/exp_lvr.npy b/simulated_data/scaling_experiment_lower_e_to_i/exp_lvr.npy index 2bdf39e..49502c4 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/exp_lvr.npy and b/simulated_data/scaling_experiment_lower_e_to_i/exp_lvr.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/exp_rates.npy b/simulated_data/scaling_experiment_lower_e_to_i/exp_rates.npy index 3f977ab..ef1f953 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/exp_rates.npy and b/simulated_data/scaling_experiment_lower_e_to_i/exp_rates.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/ks_cv_arr.json b/simulated_data/scaling_experiment_lower_e_to_i/ks_cv_arr.json index 03a69a7..0b7fdb3 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/ks_cv_arr.json +++ b/simulated_data/scaling_experiment_lower_e_to_i/ks_cv_arr.json @@ -1 +1 @@ -{"1.5": 0.4672921325208038, "1.9": 0.45356111578636693, "2.4": 0.5656335393042963, "2.2": 0.8401412494639346, "1.7": 0.46058307960153344, "2.6": 0.3322884626377528, "1.0": 0.4621087133421248, "3.0": 0.3356437972777577, "2.8": 0.28366314250273805, "1.8": 0.46019385893611187, "2.0": 0.8332955542166198, "1.6": 0.4788028593907824} \ No newline at end of file +{"1.0": 0.4600442102066984, "1.9": 0.4732053982238106, "3.0": 0.295245452679451, "2.2": 0.8217857712314862, "2.4": 0.5906129740925203, "2.0": 0.6969914512431894, "2.8": 0.3325397953894409, "1.8": 0.45605803932165334, "2.6": 0.36010742071644164, "1.6": 0.4525575025907156, "0.0": 0.46544664501641697, "1.5": 0.46385810621149504, "1.7": 0.46597599608222007} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lower_e_to_i/ks_lvr_arr.json b/simulated_data/scaling_experiment_lower_e_to_i/ks_lvr_arr.json index ddd9ba1..4959e1f 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/ks_lvr_arr.json +++ b/simulated_data/scaling_experiment_lower_e_to_i/ks_lvr_arr.json @@ -1 +1 @@ -{"1.5": 0.45298344881144004, "1.9": 0.44752019776996943, "2.4": 0.5891849764900553, "2.2": 0.7461769933446298, "1.7": 0.44807822695548105, "2.6": 0.6337007233249363, "1.0": 0.44837952208778553, "3.0": 0.6601619571964866, "2.8": 0.7095842438714945, "1.8": 0.45389284663944207, "2.0": 0.9174275742138225, "1.6": 0.46834048263528805} \ No newline at end of file +{"1.0": 0.446125441202742, "1.9": 0.4611565396090015, "3.0": 0.7209882106373063, "2.2": 0.7379911938895032, "2.4": 0.6189410715483458, "2.0": 0.7592677133482798, "2.8": 0.6659228963236401, "1.8": 0.44358201162680255, "2.6": 0.6762457299379678, "1.6": 0.4488505636435569, "0.0": 0.453392737079501, "1.5": 0.4491001227838076, "1.7": 0.45911930321800276} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lower_e_to_i/ks_rates_arr.json b/simulated_data/scaling_experiment_lower_e_to_i/ks_rates_arr.json index 66904a7..7b158a6 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/ks_rates_arr.json +++ b/simulated_data/scaling_experiment_lower_e_to_i/ks_rates_arr.json @@ -1 +1 @@ -{"1.5": 0.829780503489582, "1.9": 0.8346444550974752, "2.4": 0.7307710347175418, "2.2": 0.8641769509597627, "1.7": 0.8340753846484485, "2.6": 0.6666257897221939, "1.0": 0.8389535491968545, "3.0": 0.5935182062049134, "2.8": 0.6255867079162121, "1.8": 0.8297344043978034, "2.0": 0.9472142967676744, "1.6": 0.8303281900532039} \ No newline at end of file +{"1.0": 0.8331765862547857, "1.9": 0.8296232747891256, "3.0": 0.6028798532553826, "2.2": 0.8415997532640418, "2.4": 0.7320901802105908, "2.0": 0.9282483291598038, "2.8": 0.6277437389169402, "1.8": 0.8288317512973253, "2.6": 0.6718644863058252, "1.6": 0.8308885484773437, "0.0": 0.8395721327589188, "1.5": 0.8317848184662893, "1.7": 0.8256550627296158} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lower_e_to_i/path_to_chi.json b/simulated_data/scaling_experiment_lower_e_to_i/path_to_chi.json index 4a69eda..e637c2f 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/path_to_chi.json +++ b/simulated_data/scaling_experiment_lower_e_to_i/path_to_chi.json @@ -1 +1 @@ -{"1.5": "12742e24273ad73c879fc396b575e2e9", "1.9": "2073b9923d7eb9b128c780a5d8ea9ba8", "2.4": "55b4bb7ec82018e02b0fd69517260c39", "2.2": "630a587e46e7a18beb16defe7ab53508", "1.7": "67120aba9cd1806fc6a47145baaf18d4", "2.6": "7284c68339a7743e55e6fb3da2d8955d", "1.0": "8fe1c1f7da65657072959fc060e3fce4", "3.0": "95be71aeac41f476e5baf643ec97aa52", "2.8": "96e2cc6124445ea07f925c1c1d3c3063", "1.8": "ac8d90fe0a8ab37e188f38066fd9bfd1", "2.0": "ece6d9902639ed3b4537a0ae9cbbc4da", "1.6": "f0d51a54183ce194c043f69f476f80aa"} \ No newline at end of file +{"1.0": "04d270ef4972dcc9e4e6938202b000d7", "1.9": "3c93418f24dbcf6c2d8a33132bc75ca3", "3.0": "8fd50bf352d999bd5711b74dce77d21c", "2.2": "da271ef1ca89153e9ef04ad4789dea87", "2.4": "2440bbd8642a74be8a32b7ca1fa6975e", "2.0": "4030a96f4369bd3ea2844d0427d1e4d7", "2.8": "9a8aa3cb8a2cd12632c2bccfa2d30cf2", "1.8": "31458bed72cb1ba710239cea45ec1cab", "2.6": "43f736054d798770511d11d6cea634c7", "1.6": "9d57f3c059228348251735393f046abf", "0.0": "3ace71d426d1e6fbd34a5dbec1891b7b", "1.5": "51753977f483813e58131899e2c2c472", "1.7": "be5b9b57a154b97777664d015cc16cfc"} \ No newline at end of file diff --git a/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_bestfit.npy b/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_bestfit.npy index aea4f6a..3e20747 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_bestfit.npy and b/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_bestfit.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_groundstate.npy b/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_groundstate.npy index 70c140b..ff3ef9b 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_groundstate.npy and b/simulated_data/scaling_experiment_lower_e_to_i/sim_cv_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_bestfit.npy b/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_bestfit.npy index 9fd686e..ee796cf 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_bestfit.npy and b/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_bestfit.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_groundstate.npy b/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_groundstate.npy index 5deb502..19f663d 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_groundstate.npy and b/simulated_data/scaling_experiment_lower_e_to_i/sim_lvr_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_bestfit.npy b/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_bestfit.npy index 9cf4cce..e9a4bd1 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_bestfit.npy and b/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_bestfit.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_groundstate.npy b/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_groundstate.npy index e8144e0..d941c94 100644 Binary files a/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_groundstate.npy and b/simulated_data/scaling_experiment_lower_e_to_i/sim_rates_groundstate.npy differ diff --git a/simulated_data/scaling_experiment_lower_e_to_i/simulated_fc_bestfit.csv b/simulated_data/scaling_experiment_lower_e_to_i/simulated_fc_bestfit.csv index aef0f4f..f4a9c18 100644 --- a/simulated_data/scaling_experiment_lower_e_to_i/simulated_fc_bestfit.csv +++ b/simulated_data/scaling_experiment_lower_e_to_i/simulated_fc_bestfit.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal -bankssts,1.0,0.01182015713619466,0.07626544381060725,0.07109666709784473,0.14130951324028762,0.10729634976456046,0.17054857835991544,0.3217055308067932,0.2024476673857833,0.18991646341608273,0.025341141432132848,0.247219389872685,0.13897374816679592,0.09313559557165363,0.1033401162783108,0.33894516674471603,0.13650116224844477,0.16355243089005939,0.0979770536787097,0.10175860175431566,0.12323296086325701,0.04847113293862434,0.10659164377836478,0.05452064926009502,0.04888957478515542,0.08059332625565775,0.07413085356977901,0.09527852383885949,0.0434801918134946,0.18397601462946342,0.45942324446928295,0.24685175618354038,0.2043406173271379,0.3933099337147779 -caudalanteriorcingulate,0.01182015713619466,1.0,0.6693346467732934,0.10977747255751591,0.12043833364097488,0.362150670626326,0.015292058976574903,0.12222092053316172,0.0717171920886517,0.3744100065336827,0.2848559389255887,0.19230203097846227,0.36310333145288515,0.13630253198762207,0.3576505526895929,0.03712790432765859,0.5963402645528432,0.10088920915900522,0.4007113860843464,0.4765309029634356,0.35941011078621854,0.09896329401797212,0.22398095577697316,0.6021369917188615,0.16534747619507098,0.346357111078955,0.5742702827722024,0.4729506151772601,0.8046617409219601,0.2831860604895614,0.07657459135450294,0.16874957711691208,0.2629420687511205,0.12927382423124947 -caudalmiddlefrontal,0.07626544381060725,0.6693346467732934,1.0,0.10877482747800281,0.10362119242258415,0.42070538018881337,0.03300218212289705,0.2894271764226242,0.10247101776572339,0.47598080170761403,0.13148977281316268,0.24482135425610282,0.40821375030498397,0.14411082137025155,0.3986346933078203,0.10210321218675888,0.6089812414744056,0.08438573709162879,0.5897191867709721,0.5334705320342246,0.5215013023655067,0.09433748383185092,0.27880114532479877,0.34199023188712413,0.4020487231081246,0.27303640515460226,0.5464045059292016,0.6897497827008454,0.7869167344460447,0.3681628456787026,0.1524808275589462,0.2679108150132592,0.33974761724479835,0.19597051229930101 -cuneus,0.07109666709784473,0.10977747255751591,0.10877482747800281,1.0,0.16160945628144696,0.12789312758354807,0.08383249950671197,0.1148267928797484,0.05744774407974801,0.11836713852759158,0.16869734077448292,0.4624157333376761,0.1321082108629401,0.5194994288002309,0.12305766306338191,0.06313141984578668,0.2776868571297032,0.13830882899031746,0.12393783971370738,0.14845557535476397,0.11141757046584401,0.7494094808733509,0.08931977640476164,0.15120911795866948,0.0669588661741241,0.1858763037181067,0.09648527392854553,0.12282785593419933,0.12722708136594768,0.1229466159537541,0.041169097541278774,0.12216279086603851,0.12938080771887261,0.03990065236289647 -entorhinal,0.14130951324028762,0.12043833364097488,0.10362119242258415,0.16160945628144696,1.0,0.11770746627589866,0.5433963914352998,0.24120644305738706,0.20532222103517178,0.20422106197567874,0.28356994446205014,0.629175967934984,0.18632210817054357,0.3546095073438407,0.14499181707018524,0.14673762905737575,0.20833158755314166,0.7414412100864197,0.11639108571368431,0.1551252439593657,0.12887351342102749,0.2160005158874572,0.10863550660455011,0.18837487128948274,0.10448673429942364,0.246261950018988,0.12689567819046574,0.0904387186336417,0.08496265627808929,0.22351220160253885,0.11479665361364479,0.14799124638486486,0.39422871525916997,0.11096727211700862 -frontalpole,0.10729634976456046,0.362150670626326,0.42070538018881337,0.12789312758354807,0.11770746627589866,1.0,0.0001422225238365332,0.24783979503948983,0.06614127206345127,0.6260481576922073,0.13868786568078845,0.24484720922417552,0.7036443338010303,0.15945796319306824,0.8581664723358495,0.14727913295591497,0.4810816575278437,0.08845332539505943,0.4889529121756437,0.6772679624251706,0.5516955935454118,0.10637302843482874,0.17496441444202904,0.29307175421517034,0.04003132857249361,0.2356476486777612,0.6752879094959395,0.6027755368813849,0.4688699934240239,0.33610907558920294,0.2314568474216194,0.24665853014236963,0.5616542422955237,0.2482555792975834 -fusiform,0.17054857835991544,0.015292058976574903,0.03300218212289705,0.08383249950671197,0.5433963914352998,0.0001422225238365332,1.0,0.2066842550605628,0.4921676138697439,0.034043004294390555,0.1250868047475091,0.5601955305592614,0.02877243881603317,0.23931882086072198,0.018257312421350588,0.2534680656752861,0.06234796163767114,0.6664842439465493,0.04598067696926799,0.0007226386658379671,-0.004193625648883801,0.09223923761259586,0.07596563264240543,0.03385629283532565,0.08328829038578314,0.09185639695011694,0.0337679199125173,-0.0009770226677675278,0.009844176634571497,0.126405780984387,0.12578926898238907,0.09212176483802755,0.15343404592029336,0.1334624341926756 -inferiorparietal,0.3217055308067932,0.12222092053316172,0.2894271764226242,0.1148267928797484,0.24120644305738706,0.24783979503948983,0.2066842550605628,1.0,0.22023072210821046,0.3315327208715125,0.06654233759804708,0.48425917271222796,0.30162739652894255,0.20445823941236527,0.24185664037592303,0.3068922218922893,0.3456870399091107,0.20725581178255628,0.22031570635585535,0.26749267729019705,0.2676967047715266,0.12117358516521748,0.24085872897239052,0.12262936310895153,0.2005037350854099,0.20328330604954653,0.1727666794343544,0.25436497969894317,0.17454665889962628,0.43938052304066116,0.307288716059734,0.36694460837811416,0.3223454287585018,0.30348212556418563 -inferiortemporal,0.2024476673857833,0.0717171920886517,0.10247101776572339,0.05744774407974801,0.20532222103517178,0.06614127206345127,0.4921676138697439,0.22023072210821046,1.0,0.09311915456593307,0.07877268728833704,0.3530475063001392,0.07900756991143155,0.09885695190704206,0.08027357825435737,0.5175062259841826,0.10031158987289185,0.23993005955865132,0.0915678845750921,0.06086974099575812,0.06782608801230844,0.047150454553570316,0.05493816025424037,0.03992559238540712,0.03729509191523022,0.045217272396963784,0.10159281898542245,0.0775425352827011,0.09312694020936933,0.09715174168063109,0.23581784027269032,0.10700011639720444,0.1840748301646081,0.18814078890108288 -insula,0.18991646341608273,0.3744100065336827,0.47598080170761403,0.11836713852759158,0.20422106197567874,0.6260481576922073,0.034043004294390555,0.3315327208715125,0.09311915456593307,1.0,0.1539975906878599,0.3000862140998961,0.6828785031426762,0.177995838340243,0.6556507378241366,0.14207175702563274,0.4857987344847827,0.13940763448929064,0.5047963685743047,0.7012086557518592,0.6591821545806309,0.13664425845371142,0.1922305712922809,0.2826496029134585,0.08664778373803313,0.25448674025839707,0.5434678942537327,0.5367115028803164,0.46034170503601524,0.3705265933225481,0.36995277684746924,0.2767669696247844,0.6449294981585278,0.41358274424338715 -isthmuscingulate,0.025341141432132848,0.2848559389255887,0.13148977281316268,0.16869734077448292,0.28356994446205014,0.13868786568078845,0.1250868047475091,0.06654233759804708,0.07877268728833704,0.1539975906878599,1.0,0.23918646870307536,0.15140556269936734,0.21891521539023276,0.1359629972040044,0.04201543381851731,0.26331009459515714,0.27180408891717944,0.10496503183190208,0.15887266860049065,0.11234153589859622,0.16811377263505722,0.07956334041234915,0.47119143715751605,0.07983615703537879,0.4336500459228378,0.17492598718537,0.12862398935154895,0.15278675599647318,0.14233317666691392,0.04918735794789743,0.0685715387427234,0.15292197028938884,0.01606946623760166 -lateraloccipital,0.247219389872685,0.19230203097846227,0.24482135425610282,0.4624157333376761,0.629175967934984,0.24484720922417552,0.5601955305592614,0.48425917271222796,0.3530475063001392,0.3000862140998961,0.23918646870307536,1.0,0.30442124149612526,0.6071386860797815,0.2555698213693418,0.28347455974903046,0.44475014870270857,0.5690787350078694,0.2657768540084243,0.26213038789162746,0.243980011992138,0.4754544962754553,0.23295828360984114,0.2426229027574394,0.18175212895441867,0.36007305402240375,0.2046742876887581,0.23665426150828692,0.20257328036557834,0.4067784825287202,0.2121320576716067,0.29235789730569073,0.40691849605604924,0.2170342710219927 -lateralorbitofrontal,0.13897374816679592,0.36310333145288515,0.40821375030498397,0.1321082108629401,0.18632210817054357,0.7036443338010303,0.02877243881603317,0.30162739652894255,0.07900756991143155,0.6828785031426762,0.15140556269936734,0.30442124149612526,1.0,0.17355974748957875,0.8158019965924543,0.1616385033477942,0.474132337731144,0.13039339584934678,0.5101475831020684,0.8216812142608737,0.6243848908469309,0.12440595561281755,0.19967360702211612,0.2941626882431978,0.07611621300914784,0.2483255484477544,0.5540757157437666,0.5888159966267553,0.4439074148641587,0.3475190223132704,0.27160825015905193,0.257639773977654,0.6495830951251811,0.3063661025800218 -lingual,0.09313559557165363,0.13630253198762207,0.14411082137025155,0.5194994288002309,0.3546095073438407,0.15945796319306824,0.23931882086072198,0.20445823941236527,0.09885695190704206,0.177995838340243,0.21891521539023276,0.6071386860797815,0.17355974748957875,1.0,0.16334363577377572,0.10027214818272054,0.2975705555012017,0.32425590670018273,0.18063092810966722,0.16896609655452108,0.17858974654833074,0.5724359579151879,0.13430783972665972,0.2206204701054929,0.09328123629607718,0.2453261497598562,0.14271197721621923,0.16451692117705055,0.1285715466530874,0.2128855295050318,0.07888207758140359,0.15598502470106906,0.2119775523584905,0.08739075175636836 -medialorbitofrontal,0.1033401162783108,0.3576505526895929,0.3986346933078203,0.12305766306338191,0.14499181707018524,0.8581664723358495,0.018257312421350588,0.24185664037592303,0.08027357825435737,0.6556507378241366,0.1359629972040044,0.2555698213693418,0.8158019965924543,0.16334363577377572,1.0,0.15849482039196286,0.46218901251573224,0.09771367004688736,0.4979993974715895,0.7658081006262842,0.5956636789773264,0.10908496676769107,0.1673503648498502,0.30132134920492354,0.05007020285566962,0.24334535765102266,0.7106274164738777,0.5787610180068856,0.44551495184304196,0.32715923304841815,0.22675292070391964,0.22678651525819052,0.6385967448259734,0.2602950536215881 -middletemporal,0.33894516674471603,0.03712790432765859,0.10210321218675888,0.06313141984578668,0.14673762905737575,0.14727913295591497,0.2534680656752861,0.3068922218922893,0.5175062259841826,0.14207175702563274,0.04201543381851731,0.28347455974903046,0.1616385033477942,0.10027214818272054,0.15849482039196286,1.0,0.14380147000336924,0.14753816901712802,0.1120681528871812,0.12108657448772811,0.11874562935098779,0.029805641439608215,0.06560603490001862,0.0409544419579916,0.00811362441281089,0.07199892133032344,0.1148612208111909,0.12346146391273924,0.07508747430718198,0.1593891060206555,0.3694722798329746,0.20533785961402415,0.20153486903921417,0.21817150638174473 -paracentral,0.13650116224844477,0.5963402645528432,0.6089812414744056,0.2776868571297032,0.20833158755314166,0.4810816575278437,0.06234796163767114,0.3456870399091107,0.10031158987289185,0.4857987344847827,0.26331009459515714,0.44475014870270857,0.474132337731144,0.2975705555012017,0.46218901251573224,0.14380147000336924,1.0,0.15903454062153372,0.5378324589158429,0.5450738423729239,0.5019908760485352,0.24895530286653844,0.4219117207731816,0.6180263670548126,0.33961805344488827,0.5163294410895183,0.5013973865982041,0.5372072637060911,0.5934757264291476,0.5401322864286192,0.17932412906091724,0.4236959751436403,0.40414016880892845,0.23132832017952284 -parahippocampal,0.16355243089005939,0.10088920915900522,0.08438573709162879,0.13830882899031746,0.7414412100864197,0.08845332539505943,0.6664842439465493,0.20725581178255628,0.23993005955865132,0.13940763448929064,0.27180408891717944,0.5690787350078694,0.13039339584934678,0.32425590670018273,0.09771367004688736,0.14753816901712802,0.15903454062153372,1.0,0.08178323726988604,0.09447868035649326,0.06656121549791176,0.17467462504990083,0.0976930280117136,0.17481064947712344,0.09813714922833686,0.21964376791275791,0.09381422476485358,0.06566333109835842,0.05705978367857833,0.20505391456033115,0.11025807609105184,0.10916895956750106,0.227344242857361,0.10418431459059213 -parsopercularis,0.0979770536787097,0.4007113860843464,0.5897191867709721,0.12393783971370738,0.11639108571368431,0.4889529121756437,0.04598067696926799,0.22031570635585535,0.0915678845750921,0.5047963685743047,0.10496503183190208,0.2657768540084243,0.5101475831020684,0.18063092810966722,0.4979993974715895,0.1120681528871812,0.5378324589158429,0.08178323726988604,1.0,0.6381459866238233,0.717884511623567,0.10201777576490789,0.19208794012720784,0.31231338922883073,0.165129004122872,0.23949723641173476,0.46356356371780655,0.6475088058477542,0.5380631402956122,0.3117613632112506,0.1859094250228802,0.22003637882536875,0.4066590371888866,0.25049685770416896 -parsorbitalis,0.10175860175431566,0.4765309029634356,0.5334705320342246,0.14845557535476397,0.1551252439593657,0.6772679624251706,0.0007226386658379671,0.26749267729019705,0.06086974099575812,0.7012086557518592,0.15887266860049065,0.26213038789162746,0.8216812142608737,0.16896609655452108,0.7658081006262842,0.12108657448772811,0.5450738423729239,0.09447868035649326,0.6381459866238233,1.0,0.7643157033697044,0.12314203384851412,0.20573391901390745,0.3748274649728721,0.10121845769940258,0.27352700244043554,0.6190570874600271,0.7254279934307195,0.6064906945725204,0.3477097550579736,0.22955017444601278,0.23683570085957312,0.6248693651027897,0.2715113562073556 -parstriangularis,0.12323296086325701,0.35941011078621854,0.5215013023655067,0.11141757046584401,0.12887351342102749,0.5516955935454118,-0.004193625648883801,0.2676967047715266,0.06782608801230844,0.6591821545806309,0.11234153589859622,0.243980011992138,0.6243848908469309,0.17858974654833074,0.5956636789773264,0.11874562935098779,0.5019908760485352,0.06656121549791176,0.717884511623567,0.7643157033697044,1.0,0.11929132486655881,0.1901743433421769,0.293472376668223,0.07829999696226916,0.24804635230520938,0.5245010941296242,0.6964961414120537,0.49362398290322446,0.33125606413252223,0.23552332556908842,0.21112146890853117,0.5142644994967787,0.2809631571653606 -pericalcarine,0.04847113293862434,0.09896329401797212,0.09433748383185092,0.7494094808733509,0.2160005158874572,0.10637302843482874,0.09223923761259586,0.12117358516521748,0.047150454553570316,0.13664425845371142,0.16811377263505722,0.4754544962754553,0.12440595561281755,0.5724359579151879,0.10908496676769107,0.029805641439608215,0.24895530286653844,0.17467462504990083,0.10201777576490789,0.12314203384851412,0.11929132486655881,1.0,0.09853100383654773,0.16983490746424534,0.07103084685381134,0.1571913655965414,0.10022920306940532,0.11321648650975207,0.09179333904258152,0.08513025706146629,0.046507567330707024,0.11118603028222387,0.15415024523373178,0.04765442906943732 -postcentral,0.10659164377836478,0.22398095577697316,0.27880114532479877,0.08931977640476164,0.10863550660455011,0.17496441444202904,0.07596563264240543,0.24085872897239052,0.05493816025424037,0.1922305712922809,0.07956334041234915,0.23295828360984114,0.19967360702211612,0.13430783972665972,0.1673503648498502,0.06560603490001862,0.4219117207731816,0.0976930280117136,0.19208794012720784,0.20573391901390745,0.1901743433421769,0.09853100383654773,1.0,0.1865715718480586,0.5379801752992119,0.1511056293793029,0.1656879566261833,0.20162214131825112,0.218970889159543,0.25329193465788835,0.09902562178658172,0.4613343109062397,0.16441670525190072,0.140819465140207 -posteriorcingulate,0.05452064926009502,0.6021369917188615,0.34199023188712413,0.15120911795866948,0.18837487128948274,0.29307175421517034,0.03385629283532565,0.12262936310895153,0.03992559238540712,0.2826496029134585,0.47119143715751605,0.2426229027574394,0.2941626882431978,0.2206204701054929,0.30132134920492354,0.0409544419579916,0.6180263670548126,0.17481064947712344,0.31231338922883073,0.3748274649728721,0.293472376668223,0.16983490746424534,0.1865715718480586,1.0,0.13379589037414458,0.43856647095853135,0.3822455865732058,0.2936418133495924,0.40166470393959913,0.28057261273184286,0.09082621350993651,0.22346032752441314,0.2163252063319187,0.09811840313644472 -precentral,0.04888957478515542,0.16534747619507098,0.4020487231081246,0.0669588661741241,0.10448673429942364,0.04003132857249361,0.08328829038578314,0.2005037350854099,0.03729509191523022,0.08664778373803313,0.07983615703537879,0.18175212895441867,0.07611621300914784,0.09328123629607718,0.05007020285566962,0.00811362441281089,0.33961805344488827,0.09813714922833686,0.165129004122872,0.10121845769940258,0.07829999696226916,0.07103084685381134,0.5379801752992119,0.13379589037414458,1.0,0.1263179447015592,0.08647887376001018,0.12833454078041567,0.2093644304300941,0.22938636849285646,0.04804201904574167,0.32681690809398695,0.0899829787678558,0.08627474574841668 -precuneus,0.08059332625565775,0.346357111078955,0.27303640515460226,0.1858763037181067,0.246261950018988,0.2356476486777612,0.09185639695011694,0.20328330604954653,0.045217272396963784,0.25448674025839707,0.4336500459228378,0.36007305402240375,0.2483255484477544,0.2453261497598562,0.24334535765102266,0.07199892133032344,0.5163294410895183,0.21964376791275791,0.23949723641173476,0.27352700244043554,0.24804635230520938,0.1571913655965414,0.1511056293793029,0.43856647095853135,0.1263179447015592,1.0,0.2722627910108711,0.26326420121432875,0.2804543579000899,0.5663577313565866,0.07345209240122652,0.18664588427964013,0.22795222741569926,0.08361717477744571 -rostralanteriorcingulate,0.07413085356977901,0.5742702827722024,0.5464045059292016,0.09648527392854553,0.12689567819046574,0.6752879094959395,0.0337679199125173,0.1727666794343544,0.10159281898542245,0.5434678942537327,0.17492598718537,0.2046742876887581,0.5540757157437666,0.14271197721621923,0.7106274164738777,0.1148612208111909,0.5013973865982041,0.09381422476485358,0.46356356371780655,0.6190570874600271,0.5245010941296242,0.10022920306940532,0.1656879566261833,0.3822455865732058,0.08647887376001018,0.2722627910108711,1.0,0.5932940044306027,0.5822019688987052,0.30930530971183884,0.15799431721824103,0.19290244210473165,0.5089054610969961,0.19413308945995583 -rostralmiddlefrontal,0.09527852383885949,0.4729506151772601,0.6897497827008454,0.12282785593419933,0.0904387186336417,0.6027755368813849,-0.0009770226677675278,0.25436497969894317,0.0775425352827011,0.5367115028803164,0.12862398935154895,0.23665426150828692,0.5888159966267553,0.16451692117705055,0.5787610180068856,0.12346146391273924,0.5372072637060911,0.06566333109835842,0.6475088058477542,0.7254279934307195,0.6964961414120537,0.11321648650975207,0.20162214131825112,0.2936418133495924,0.12833454078041567,0.26326420121432875,0.5932940044306027,1.0,0.6773803635263687,0.3445708710866363,0.21424503095555952,0.22990972001783955,0.4818306996006428,0.22951459152817985 -superiorfrontal,0.0434801918134946,0.8046617409219601,0.7869167344460447,0.12722708136594768,0.08496265627808929,0.4688699934240239,0.009844176634571497,0.17454665889962628,0.09312694020936933,0.46034170503601524,0.15278675599647318,0.20257328036557834,0.4439074148641587,0.1285715466530874,0.44551495184304196,0.07508747430718198,0.5934757264291476,0.05705978367857833,0.5380631402956122,0.6064906945725204,0.49362398290322446,0.09179333904258152,0.218970889159543,0.40166470393959913,0.2093644304300941,0.2804543579000899,0.5822019688987052,0.6773803635263687,1.0,0.30935687657863326,0.12193005891774963,0.18628262987877717,0.3490860855884459,0.17696703155661006 -superiorparietal,0.18397601462946342,0.2831860604895614,0.3681628456787026,0.1229466159537541,0.22351220160253885,0.33610907558920294,0.126405780984387,0.43938052304066116,0.09715174168063109,0.3705265933225481,0.14233317666691392,0.4067784825287202,0.3475190223132704,0.2128855295050318,0.32715923304841815,0.1593891060206555,0.5401322864286192,0.20505391456033115,0.3117613632112506,0.3477097550579736,0.33125606413252223,0.08513025706146629,0.25329193465788835,0.28057261273184286,0.22938636849285646,0.5663577313565866,0.30930530971183884,0.3445708710866363,0.30935687657863326,1.0,0.2001309122678107,0.3170185122544074,0.3274876318068663,0.22114632125576408 -superiortemporal,0.45942324446928295,0.07657459135450294,0.1524808275589462,0.041169097541278774,0.11479665361364479,0.2314568474216194,0.12578926898238907,0.307288716059734,0.23581784027269032,0.36995277684746924,0.04918735794789743,0.2121320576716067,0.27160825015905193,0.07888207758140359,0.22675292070391964,0.3694722798329746,0.17932412906091724,0.11025807609105184,0.1859094250228802,0.22955017444601278,0.23552332556908842,0.046507567330707024,0.09902562178658172,0.09082621350993651,0.04804201904574167,0.07345209240122652,0.15799431721824103,0.21424503095555952,0.12193005891774963,0.2001309122678107,1.0,0.2658043894241956,0.3278341688934954,0.6768176691138554 -supramarginal,0.24685175618354038,0.16874957711691208,0.2679108150132592,0.12216279086603851,0.14799124638486486,0.24665853014236963,0.09212176483802755,0.36694460837811416,0.10700011639720444,0.2767669696247844,0.0685715387427234,0.29235789730569073,0.257639773977654,0.15598502470106906,0.22678651525819052,0.20533785961402415,0.4236959751436403,0.10916895956750106,0.22003637882536875,0.23683570085957312,0.21112146890853117,0.11118603028222387,0.4613343109062397,0.22346032752441314,0.32681690809398695,0.18664588427964013,0.19290244210473165,0.22990972001783955,0.18628262987877717,0.3170185122544074,0.2658043894241956,1.0,0.2615208848458958,0.2795357324964107 -temporalpole,0.2043406173271379,0.2629420687511205,0.33974761724479835,0.12938080771887261,0.39422871525916997,0.5616542422955237,0.15343404592029336,0.3223454287585018,0.1840748301646081,0.6449294981585278,0.15292197028938884,0.40691849605604924,0.6495830951251811,0.2119775523584905,0.6385967448259734,0.20153486903921417,0.40414016880892845,0.227344242857361,0.4066590371888866,0.6248693651027897,0.5142644994967787,0.15415024523373178,0.16441670525190072,0.2163252063319187,0.0899829787678558,0.22795222741569926,0.5089054610969961,0.4818306996006428,0.3490860855884459,0.3274876318068663,0.3278341688934954,0.2615208848458958,1.0,0.3439847683801785 -transversetemporal,0.3933099337147779,0.12927382423124947,0.19597051229930101,0.03990065236289647,0.11096727211700862,0.2482555792975834,0.1334624341926756,0.30348212556418563,0.18814078890108288,0.41358274424338715,0.01606946623760166,0.2170342710219927,0.3063661025800218,0.08739075175636836,0.2602950536215881,0.21817150638174473,0.23132832017952284,0.10418431459059213,0.25049685770416896,0.2715113562073556,0.2809631571653606,0.04765442906943732,0.140819465140207,0.09811840313644472,0.08627474574841668,0.08361717477744571,0.19413308945995583,0.22951459152817985,0.17696703155661006,0.22114632125576408,0.6768176691138554,0.2795357324964107,0.3439847683801785,1.0 +bankssts,1.0,0.08028530156106309,0.11727926355333086,0.07457452095713533,0.22139169658957306,0.11839127827267659,0.22488066791172084,0.38878510282382717,0.3400500488623847,0.2711391207904973,0.09553685649463643,0.3132048166694094,0.19710062674696865,0.15353966479596556,0.15345443146685708,0.49245960196886873,0.18951047805160579,0.18653145253360692,0.11015423235376179,0.17424195492214162,0.13422569867920317,0.039904094964957025,0.16203699946496447,0.09267505308785078,0.049884703075092914,0.10569735707768704,0.09964848679185698,0.10791184606585928,0.08159734156441921,0.2326641658312735,0.5838874486805424,0.2990865587755271,0.3348324128222183,0.5052128904640022 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b/simulated_data/scaling_experiment_lower_e_to_i/simulated_fc_groundstate.csv @@ -1,35 +1,35 @@ area,bankssts,caudalanteriorcingulate,caudalmiddlefrontal,cuneus,entorhinal,frontalpole,fusiform,inferiorparietal,inferiortemporal,insula,isthmuscingulate,lateraloccipital,lateralorbitofrontal,lingual,medialorbitofrontal,middletemporal,paracentral,parahippocampal,parsopercularis,parsorbitalis,parstriangularis,pericalcarine,postcentral,posteriorcingulate,precentral,precuneus,rostralanteriorcingulate,rostralmiddlefrontal,superiorfrontal,superiorparietal,superiortemporal,supramarginal,temporalpole,transversetemporal 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-inferiortemporal,0.014691905663231105,-0.02634760030032233,-0.008365341234684794,-0.033748535763732886,-0.008106866030996559,-0.01678717734818892,0.0701974403314659,0.08402323322162052,1.0,-0.018719837082511112,-0.03055614132595212,0.039550767824082414,0.04589274355605312,-0.02300504504800117,0.026131140768381907,0.08726414706231755,-0.01213815004926996,-0.011586511871270543,0.017127039810534962,0.00858105323882888,-0.0026140050013871226,-0.039205390095321944,0.01570633239689774,-0.03920171958322664,0.006556841417623154,-0.04945292111582142,-0.0025533235181353768,-0.008847867323245577,0.013048082441886644,0.0023531975076561897,0.006649927834221702,0.018521234295256005,0.008461350919373896,-0.024014933547435967 -insula,0.03558222215169223,0.023914817896638633,-0.02520281429918114,0.024859892001103535,0.01495764960271528,-0.001193290412629607,-0.020428828141725773,0.0021627726528664994,-0.018719837082511112,1.0,0.030159094181565912,0.001138667331456621,0.015015944992890046,0.023886540732144173,0.030995128130842743,0.013545847793778047,0.046437689201588826,-0.0058055027844629795,-0.028768919485749483,0.009362837117419236,0.029863587668907673,0.005313265682763985,-0.0014359251546014003,-0.0069060454707966625,0.0018124510950072023,-0.015433925717459138,0.010401855492867738,-0.04816435735755132,0.010859066350063952,0.01313399075155077,0.05703192564203263,0.0472774821692858,0.051744649740372795,0.058727824477028415 -isthmuscingulate,0.02504266694034003,0.0405515964942036,-0.003493766743377807,0.08128035434530777,-0.006187051265237415,-0.025436135508441423,0.006625618495852543,-0.02935222681670485,-0.03055614132595212,0.030159094181565912,1.0,-0.014467865854387543,-0.029033861408442347,0.08577896076177102,-0.020191040511433615,-0.002320376656657433,0.0406462675945759,0.0746586899415722,-0.01953994953624427,0.0021939089651868532,-0.0013338971244741913,0.06258573693254114,0.020408626036871165,0.07820496030683402,0.010451855949368987,0.10079493915709299,-0.004034123059902062,-0.02730959766690842,0.016063496422768025,0.06323309298226626,-0.00411874435238929,0.02759233323305537,-0.010305223522301461,-0.01336810972898897 -lateraloccipital,0.0007210250436691357,0.0020736596326061704,-0.009767119394257819,0.008041362939250243,0.00615629365494996,0.016358932189353338,0.04120796198224421,0.05069832753164967,0.039550767824082414,0.001138667331456621,-0.014467865854387543,1.0,0.010777123864985456,0.06115515829848708,-0.0111317972814505,0.005678420191249686,-0.026577886124882506,-0.0038019478205671593,0.039559167750373866,0.00040688272410807484,0.02040697532358378,0.042936855687033024,0.0022551419579126693,0.009887807522196635,0.01314690606639176,0.016178713398289832,0.020044780209880857,0.01511728181835326,0.008961805047471134,0.04072736246064469,0.013788689354165556,0.021599214716610058,-0.018161195694399244,0.018041776746656534 -lateralorbitofrontal,0.017388635629895947,0.015406791569677603,0.025223686597183485,-0.012723608312129415,0.0007916874908733576,0.03362351735164242,0.00048702199325317185,0.028905549318470367,0.04589274355605312,0.015015944992890046,-0.029033861408442347,0.010777123864985456,1.0,0.03919002418918106,0.09400533454930116,0.013576717890201005,0.005627187203497244,0.003901510056717041,0.0075117264812829395,0.047394446056290326,-0.009134497350000806,0.007027001218383339,-0.009507472932681334,0.024670584605701287,0.011043582504664093,0.011351812164048333,0.03772921167367413,0.01608137179024291,-0.0022665962438875057,-0.02059023491977813,0.026050558141374146,-0.00993391399093187,0.05705475200721441,0.038439105154976984 -lingual,-0.021842285190464068,0.019170732564596827,-0.018605583448806893,0.10061779686975772,0.012672063871928515,0.004711088727762258,0.04396193778763291,-0.047834495741093684,-0.02300504504800117,0.023886540732144173,0.08577896076177102,0.06115515829848708,0.03919002418918106,1.0,0.02521572273184694,-0.04418807124244299,0.0025586307113297916,0.05338458684249057,0.02387012599303529,0.022278953186098332,0.014796329451498282,0.19858847517129566,-0.03223042065223139,0.02952573397512954,-0.011135748390765799,0.059948419534454254,-0.003258111474557293,-0.03852568460730209,0.024827909936788246,0.022235493995744118,-0.014598107770893865,-0.04198645481588673,0.026916306389765835,-0.010020241867777432 -medialorbitofrontal,0.0004518361790158974,0.012001862712655853,0.04328088375115921,-0.010087883490594893,0.010516581805499888,0.07562290225627163,-1.581073475001206e-06,-0.019241838133275933,0.026131140768381907,0.030995128130842743,-0.020191040511433615,-0.0111317972814505,0.09400533454930116,0.02521572273184694,1.0,0.0288084836169448,0.031153875583630135,0.008150004607693951,-0.019814144786898923,-0.007479352202936932,0.009019756670145268,-0.01121281530968258,-0.04132302478824811,0.008360196494455352,0.019591811474077535,-0.023573862331142056,0.03742344915546287,0.04232478119881373,0.007832143398134131,-0.036502077905459264,0.01846061143740066,-0.051808852640317295,0.06257646340889446,-0.014232920389818536 -middletemporal,0.07726436892882263,0.014087550000823217,0.018514911767844745,-0.005901703865598294,-0.010077216009580808,0.01145468136840887,0.01074456639491441,0.031205749863521617,0.08726414706231755,0.013545847793778047,-0.002320376656657433,0.005678420191249686,0.013576717890201005,-0.04418807124244299,0.0288084836169448,1.0,-0.008046664218144064,-0.025889918500822676,0.009178661372204609,-0.009353545298947795,0.020763699710185553,-0.024502569184779797,-0.017383009268553514,0.0019438514355720575,0.007932905509283458,0.0021215121328654564,-0.003428426508135333,0.010384425101880203,0.045727731101005295,0.029727970325822944,0.03898999348954243,0.06556472377402933,0.012582584195965847,-0.027804068900443128 -paracentral,0.036757924148717265,0.036700494731171075,-0.011318688094371351,0.039668233046296845,7.755531669567497e-05,-0.03407966779442233,-0.009314966414016265,-0.011000748810785683,-0.01213815004926996,0.046437689201588826,0.0406462675945759,-0.026577886124882506,0.005627187203497244,0.0025586307113297916,0.031153875583630135,-0.008046664218144064,1.0,-0.0014304295353484797,-0.03424334909358586,0.020034769340687705,0.008829329766938357,0.04267202987621957,0.07628540741938618,0.04919207650163968,0.002395502499584617,0.08405711786168045,0.019348654516616836,0.01912398574454905,0.03814835897167311,0.011908017997895674,0.04706396975791393,0.0062975416432347565,0.011282252873106675,0.017799848495732917 -parahippocampal,-0.013971469378905296,0.017227977751140367,0.0028997774231574545,0.04943169621061905,0.06242062657462911,0.0138828054601923,0.04753586377391353,0.009335667701891101,-0.011586511871270543,-0.0058055027844629795,0.0746586899415722,-0.0038019478205671593,0.003901510056717041,0.05338458684249057,0.008150004607693951,-0.025889918500822676,-0.0014304295353484797,1.0,-0.015140062275830122,0.019216240336884367,0.004912121838181183,0.021101241323418896,0.02445537183147099,0.008446589319365429,-0.008787753456496994,0.03605651384127276,0.013856793416813703,-0.043897919864618426,-0.011489045026537756,0.015536004433364713,0.023450781321419437,-0.025018720530856242,0.0056444367202377445,0.007301241810228738 -parsopercularis,-0.024995980808259523,-0.005836202641340089,0.06074746738560193,-0.007136820460067824,-0.01964443310743621,-0.009299958312756124,0.02044702093901564,0.017734124486416026,0.017127039810534962,-0.028768919485749483,-0.01953994953624427,0.039559167750373866,0.0075117264812829395,0.02387012599303529,-0.019814144786898923,0.009178661372204609,-0.03424334909358586,-0.015140062275830122,1.0,0.005047032595154823,0.1009499881621625,-0.027605020115865513,0.0008183088513448161,-0.0004466403175931449,0.03593062618539276,0.00219866927164255,-0.009648194499343846,0.06255002874050768,0.02379730870043116,0.002373952399015261,0.005048878928248148,0.03398781715553318,0.015091564577120443,-0.004186140980976939 -parsorbitalis,0.0026863137034358656,-0.007180772834261616,-0.005295396238909146,0.022344988167948783,-0.01260891619064248,0.03576879937533157,0.02625392989819355,0.0053214902475103056,0.00858105323882888,0.009362837117419236,0.0021939089651868532,0.00040688272410807484,0.047394446056290326,0.022278953186098332,-0.007479352202936932,-0.009353545298947795,0.020034769340687705,0.019216240336884367,0.005047032595154823,1.0,0.07574523911480671,0.030229798826756738,0.0006999547330489034,0.013397805255350151,-0.0011033406531888554,-0.010023197614338758,0.003541697121090255,0.040763489844014386,0.011742066633711341,0.015781391981104887,0.022605209542334297,0.0058637174063974305,-0.01727478467124765,0.002523963875239078 -parstriangularis,0.014405896035348562,-0.01321674314003614,0.03198721306786642,0.0014573863497398132,0.015515513606810529,0.007390613880788277,0.0006494861402376479,-0.004019718663212623,-0.0026140050013871226,0.029863587668907673,-0.0013338971244741913,0.02040697532358378,-0.009134497350000806,0.014796329451498282,0.009019756670145268,0.020763699710185553,0.008829329766938357,0.004912121838181183,0.1009499881621625,0.07574523911480671,1.0,-0.0158593518738857,0.04069785115395612,-0.01596550324132479,0.018948260241764794,0.025670963887793018,0.007847043655225993,0.06309937956856439,0.04900066281099974,-0.0039738578419717405,-0.003365079234928111,0.028023916542998243,0.01818002776183767,-0.006470180041435136 -pericalcarine,-0.036326121674572394,-0.006642669990574016,-0.04068044159915602,0.3788444983253008,0.015763279785514377,0.017305926656143406,0.018156344854568494,-0.010381707144151582,-0.039205390095321944,0.005313265682763985,0.06258573693254114,0.042936855687033024,0.007027001218383339,0.19858847517129566,-0.01121281530968258,-0.024502569184779797,0.04267202987621957,0.021101241323418896,-0.027605020115865513,0.030229798826756738,-0.0158593518738857,1.0,-0.008564457307988877,0.028756318576424682,-0.02061609143958471,0.05494952089009337,0.018662692149422323,-0.012402279627210123,-0.015090176952723862,0.04487786693972057,0.0017982501119619089,-0.0009038910671843359,0.007769947044275313,0.011825547152160356 -postcentral,0.03044984444031466,0.002543337872289798,0.005607027520313235,0.016681599014901793,-0.0021213694521778218,0.0027461755105595747,-0.006115177813524544,0.03066502634342153,0.01570633239689774,-0.0014359251546014003,0.020408626036871165,0.0022551419579126693,-0.009507472932681334,-0.03223042065223139,-0.04132302478824811,-0.017383009268553514,0.07628540741938618,0.02445537183147099,0.0008183088513448161,0.0006999547330489034,0.04069785115395612,-0.008564457307988877,1.0,0.007347567375593174,0.09491605763095891,0.04976741225124222,0.003468622418287263,-0.0010366977340840928,0.0057983200534055855,0.06236350837873178,0.04676949835862519,0.12113875205429565,0.00919623780241016,0.029064479988661636 -posteriorcingulate,0.00022553464743118112,0.050057575460325465,0.0045497104576922185,0.040656254841011874,-0.006970897437992648,-0.010826259207747931,-0.020378265832419255,-0.019144127144182267,-0.03920171958322664,-0.0069060454707966625,0.07820496030683402,0.009887807522196635,0.024670584605701287,0.02952573397512954,0.008360196494455352,0.0019438514355720575,0.04919207650163968,0.008446589319365429,-0.0004466403175931449,0.013397805255350151,-0.01596550324132479,0.028756318576424682,0.007347567375593174,1.0,-0.02617513766861782,0.09691849999807974,0.02151392514075764,0.003125283467532941,-0.001035269507230124,-0.017907829724905254,0.01317544473335048,0.013235090468969134,0.02531298788710126,0.04318657205652585 -precentral,0.022324112703213193,0.002621049227992213,0.05748227397516119,-0.0024987682557198773,0.008829251771344008,-0.023170002981390766,0.0077186063874447805,0.01397519799628217,0.006556841417623154,0.0018124510950072023,0.010451855949368987,0.01314690606639176,0.011043582504664093,-0.011135748390765799,0.019591811474077535,0.007932905509283458,0.002395502499584617,-0.008787753456496994,0.03593062618539276,-0.0011033406531888554,0.018948260241764794,-0.02061609143958471,0.09491605763095891,-0.02617513766861782,1.0,-0.011883557400498197,0.0044250449168444644,0.016936481190113137,0.015046385324175791,0.0007013551535713441,0.03117133910368987,0.04163098069412207,0.005890516392702431,0.013290230789336626 -precuneus,-0.011256442568174983,0.032374725139402184,-0.0006110381232260077,0.10655486964819294,0.015448128637989967,-0.016293979542211214,-0.004969897630358354,-0.0010601979617863707,-0.04945292111582142,-0.015433925717459138,0.10079493915709299,0.016178713398289832,0.011351812164048333,0.059948419534454254,-0.023573862331142056,0.0021215121328654564,0.08405711786168045,0.03605651384127276,0.00219866927164255,-0.010023197614338758,0.025670963887793018,0.05494952089009337,0.04976741225124222,0.09691849999807974,-0.011883557400498197,1.0,0.019701798302158645,-0.013701607726259194,0.021808745193794585,0.12983885592211675,0.05755193778004162,0.03138030897673585,-0.025113101314148893,0.04290136167276492 -rostralanteriorcingulate,0.003578866367475268,0.05692218949302662,-0.010950415118843997,0.0030977097734494695,0.016215284930977597,0.033733156833755024,-0.00902097043519262,-0.0029546001937251036,-0.0025533235181353768,0.010401855492867738,-0.004034123059902062,0.020044780209880857,0.03772921167367413,-0.003258111474557293,0.03742344915546287,-0.003428426508135333,0.019348654516616836,0.013856793416813703,-0.009648194499343846,0.003541697121090255,0.007847043655225993,0.018662692149422323,0.003468622418287263,0.02151392514075764,0.0044250449168444644,0.019701798302158645,1.0,0.006034675583356714,0.05550661799665821,0.03200841300344613,0.012380850574505123,-0.01609167691550792,-0.014500581963164973,-0.012249649687434402 -rostralmiddlefrontal,0.01912567793066142,-0.014453510552699627,0.059697270889543505,-0.0397685051078849,0.004637924299740429,0.06257228952603928,-0.012648033281744827,0.03435231984120793,-0.008847867323245577,-0.04816435735755132,-0.02730959766690842,0.01511728181835326,0.01608137179024291,-0.03852568460730209,0.04232478119881373,0.010384425101880203,0.01912398574454905,-0.043897919864618426,0.06255002874050768,0.040763489844014386,0.06309937956856439,-0.012402279627210123,-0.0010366977340840928,0.003125283467532941,0.016936481190113137,-0.013701607726259194,0.006034675583356714,1.0,0.09729407714612279,-0.03394298345617168,0.00033911963755426576,-0.003861538376697121,0.019160337259189218,-0.008422284748014748 -superiorfrontal,0.011007641010176357,0.028623434693507307,0.06870114899183892,-0.00431527272792231,0.01833879057655846,0.03605261539589399,0.0067315413548786765,0.010477952681491202,0.013048082441886644,0.010859066350063952,0.016063496422768025,0.008961805047471134,-0.0022665962438875057,0.024827909936788246,0.007832143398134131,0.045727731101005295,0.03814835897167311,-0.011489045026537756,0.02379730870043116,0.011742066633711341,0.04900066281099974,-0.015090176952723862,0.0057983200534055855,-0.001035269507230124,0.015046385324175791,0.021808745193794585,0.05550661799665821,0.09729407714612279,1.0,0.009193582010742945,0.0057145746776595336,0.02557883629021746,1.916136849377381e-05,-0.019449852310764584 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+transversetemporal,0.03190651470195851,-0.0014179939712298888,-0.00962019198710638,0.02009269200480009,-0.00914272339140918,-0.027109033799422266,-0.012172685044813386,0.04255075757848438,-0.015451307545505145,0.054125943031404535,-0.0023505970101046266,-0.025034213706144146,0.008346485601553644,0.0027485069580441097,-0.00953395848827475,-0.008065383364030688,0.025585145659487787,-0.01984395883548756,0.008037374396927175,0.01974433965726119,-0.007508087751581766,-0.02105731618254809,0.021164639587790083,0.005728434792116156,0.009384798750730039,-0.00137606214281113,0.009219313639696101,-0.00712163000442117,-0.0154472413142454,0.014644859759504641,0.15026254449576365,0.057956540614759064,0.021883086182962048,1.0 diff --git a/src/compute_scaling_experiments.py b/src/compute_scaling_experiments.py index b625f22..30c82ba 100644 --- a/src/compute_scaling_experiments.py +++ b/src/compute_scaling_experiments.py @@ -14,10 +14,10 @@ experiments = [ 'lower_etoi', 'lichtman_chii2_smaller_g', - 'lichtman_chii2_different_time_consts', 'lichtman_chii2_distributed_params', 'lichtman_chii2_different_seed', - 'lichtman_chii2_random_seeds' + 'lichtman_chii2_random_seeds', + 'lichtman_chii2_different_seed_factor10per7' ] if len(sys.argv) > 1 and sys.argv[1] in experiments: @@ -25,7 +25,7 @@ else: simulation = 'lichtman_chii2_different_seed' -# base_path = os.path.join(os.getcwd(), 'out/') +base_path = os.path.join(os.getcwd(), 'out/') if simulation == 'lichtman_chii2_different_seed': from compute_scaling_experiments_helpers import state_scaling_lichtman_chii2_different_seed as state @@ -52,7 +52,6 @@ '6cc8213fba1b6ff7935d0505491045ea/', 'aa3e9b1f3ef704504bee98665a215178/', ] - base_path = '/p/scratch/cjinb33/shimoura1/python3.9/humam_lichtman_chii2_random_seeds/' sim_path = '4772f0b020c9f3310f4096a6db758343/' ana_path = 'fff793e841649603c59db1822e566c93/' elif simulation == 'lichtman_chii2_random_seeds': @@ -71,7 +70,6 @@ '6cc8213fba1b6ff7935d0505491045ea/', 'aa3e9b1f3ef704504bee98665a215178/', ] - base_path = '/p/scratch/cjinb33/shimoura1/python3.9/humam_lichtman_chii2_random_seeds/' sim_path = '4772f0b020c9f3310f4096a6db758343/' # 2903 ana_path = 'fff793e841649603c59db1822e566c93/' elif simulation == 'lower_etoi': @@ -92,7 +90,6 @@ '51753977f483813e58131899e2c2c472/', 'be5b9b57a154b97777664d015cc16cfc/' ] - base_path = '/p/scratch/cjinb33/shimoura1/python3.9/humam_lower_etoi/' sim_path = '4772f0b020c9f3310f4096a6db758343/' ana_path = '875fb14936529840c819d2bdc86ff14f/' elif simulation == 'lichtman_chii2_smaller_g': @@ -106,26 +103,6 @@ 'e1f0481943c7dd4937436abc3b0ba8ec/', 'f6de3f7c02703fa1dde65ef14e61171b/' ] - base_path = '/p/scratch/cjinb33/shimoura1/python3.9/humam_lichtman_chii2_smaller_g/' - sim_path = '4772f0b020c9f3310f4096a6db758343/' - ana_path = '1931d354c159b2a01cba9c4bd0c9ed46/' -elif simulation == 'lichtman_chii2_different_time_consts': - from compute_scaling_experiments_helpers import state_scaling_lichtman_chii2_different_time_consts as state - save_data_dir = 'simulated_data/scaling_experiment_lichtman_chii2_different_time_consts' - interesting_paths = [ - '00d934bd2694ad6970f9c524616cdf30/', - '5ba365e8ec002d2786d214345aca891f/', - '7f378a020da9f7aba1d783b820e6acce/', - 'd1826785ec16aaad0f0c83144c86fb70/', - '3d611f90e1fff6060ddbf9a058d1459b/', - '5e69f9756903bc364c83ffe5e3ad480a/', - '8cd1d42a86c90996650fa98a9982d221/', - 'ebcc993ae9d4a5c2a11124f94128e1a4/', - '56452204319c31bd9e0debcbc03f8f2c/', - '75ec59f25c4826f9e2de3447a63fa61d/', - 'c23ff0bd24504b81b276fc3bcb964431/' - ] - base_path = '/p/scratch/cjinb33/shimoura1/python3.9/humam_lichtman_chii2_different_time_consts/' sim_path = '4772f0b020c9f3310f4096a6db758343/' ana_path = '1931d354c159b2a01cba9c4bd0c9ed46/' elif simulation == 'lichtman_chii2_distributed_params': @@ -144,7 +121,51 @@ '70029618054442dffacb000422702166/', 'b2a35418096820454aed549ab4d7a215/' ] - base_path = '/p/scratch/cjinb33/shimoura1/python3.9/humam_lichtman_chii2_distributed_params/' + sim_path = '4772f0b020c9f3310f4096a6db758343/' + ana_path = '1931d354c159b2a01cba9c4bd0c9ed46/' +elif simulation == 'lichtman_chii2_different_seed_factor10per7': + from compute_scaling_experiments_helpers import state_scaling_lichtman_chii2_different_seed_factor10per7 as state + save_data_dir = 'simulated_data/scaling_experiment_lichtman_chii2_different_seed_factor10per7' + interesting_paths = [ + '16de0d322e4b222e6f4713ba662c41da/', + '66335d4198126b33771291d5467fbf27/', + '95c2a43bd22a1f27ce65ff551564b557/', + 'd4731e112855447f384827a1281528c5/', + '19abb84050e7cfadf9fcdf10d5bb0a34/', + 'd9f98fdf4f25bd770b5a8b3afae31697/', + '69bb1d367ce878bd9bc7ae7cc46185b9/', + 'a44832b116875b8cc03d1a77b7278d7e/', + '293fc6e4537603ce6e867f563c05049b/', + '6bc32c0f64d91ae502f07d91b92da12b/', + 'aa3b81bb3f3795c81c9a5b3454e95494/', + 'dff92fb0f6b0e3aa5718b6b43d340a49/', + '2f75bb3dd5920776a7a720916cd28f71/', + '6e68141c0b412bd68ecf23ae798d00fe/', + 'ab01c8287e7f70ccc3d3a43801247165/', + 'e3e1c4a3db89d42249965451312aeb75/', + '300340dca17d9378bf64236bb25f3ae3/', + '73717e152e908b8ac0831e06ce8c8ffb/', + 'ac304a4d73d44a7e6cda7676c1ff374a/', + '3619e6131dbfdb258bba41b919f79541/', + '75065f05aea926f0e4153664f4f9212c/', + 'bc84db13bd75614bd36a563498c142c9/', + 'e891197ebe3eeebb4e555f72273ab92c/', + '4e3a98b5e43c004f49deba5fe35023f4/', + '89bd4af3f1044072c5d4b1e634e4d517/', + 'c114dc8dd3981cebd93568871ec1a53a/', + '58320586de2820a50f47b93962e70f48/', + '8aca6e3e2da9e7f78559bd9323850983/', + 'c56b28a915a568e44d505296b2f3f83d/', + 'e958fa00425fa488a97292bf48d930af/', + 'e977991b439cc72a0a77154cc97703cb/', + '5fd951e40a387f8bc20ac7fbcc4f2d5d/', + 'cce7ba1da76cc43ec1d64c7034a78128/', + 'f24a0ce0a69a0fe8ed15bcca21db420e/', + '642431ea0f4d4cd7885d71f1b2ca9fdf/', + '93b288add2929814291c19ee2b445e6f/', + 'ce89dacc4fe37ff7873c0a1576ed79d9/', + 'f8d202967ba7cab69ef473165aaa9f74/' + ] sim_path = '4772f0b020c9f3310f4096a6db758343/' ana_path = '1931d354c159b2a01cba9c4bd0c9ed46/' diff --git a/src/compute_scaling_experiments_helpers.py b/src/compute_scaling_experiments_helpers.py index 90db2c6..e7a1dd9 100644 --- a/src/compute_scaling_experiments_helpers.py +++ b/src/compute_scaling_experiments_helpers.py @@ -17,11 +17,6 @@ 'bestfit': 'f358fd7d2844f0a6e3e806352af2fe2f', #chi=1.75, overall best agreement } -state_scaling_lichtman_chii2_different_time_consts = { - 'groundstate': 'd1826785ec16aaad0f0c83144c86fb70', - 'bestfit': '75ec59f25c4826f9e2de3447a63fa61d', - } - state_scaling_lichtman_chii2_distributed_params = { 'groundstate': 'c207557ee4ca705ba40627631f44d6f7', 'bestfit': '105ccb56b38cd990b839889f12953a38', @@ -37,6 +32,11 @@ 'bestfit': '8c49a09f51f44fbb036531ce0719b5ba', } +state_scaling_lichtman_chii2_different_seed_factor10per7 = { + 'groundstate': '4e3a98b5e43c004f49deba5fe35023f4', + 'bestfit': 'bc84db13bd75614bd36a563498c142c9', + } + left_ordering = {'isthmuscingulate': 'DMN', 'medialorbitofrontal': 'DMN', 'posteriorcingulate': 'DMN', diff --git a/src/default_ana_params.py b/src/default_ana_params.py index 81497bb..93d1725 100644 --- a/src/default_ana_params.py +++ b/src/default_ana_params.py @@ -6,30 +6,30 @@ params['mplstyles'] = 'misc/mplstyles/report_plots_master.mplstyle' params['extension'] = 'png' -params['seed'] = 2106 +params['seed'] = 2903 params['python_sort'] = True params['rate_histogram'] = { - 'binsize': 1., # in ms + 'binsize': 1., # in ms 't_start': 500., # in ms - 't_stop': None # in ms + 't_stop': None # in ms } params['meanFiringRate'] = { 't_start': 500., # in ms - 't_stop': None # in ms + 't_stop': None # in ms } params['individualFiringRate'] = { 't_start': 500., # in ms - 't_stop': 2500. # in ms + 't_stop': None # in ms } params['correlation_coefficient'] = { 'subsample': 2000, - 'tbin': 1., # in ms + 'tbin': 1., # in ms 'tmin': 500., # in ms - 'tmax': None # in ms + 'tmax': None # in ms } params['compute_louvain'] = { @@ -38,13 +38,13 @@ params['cv'] = { 't_start': 500., # in ms - 't_stop': None, # in ms + 't_stop': None, # in ms 'min_spikes': 10 } params['lvr'] = { 't_start': 500., # in ms - 't_stop': None, # in ms + 't_stop': None, # in ms 'min_spikes': 10 } @@ -69,7 +69,7 @@ } params['plotBOLD'] = { - 'tmin': 500., # in ms + 'tmin': 500., # in ms 'stepSize': 1. # in ms } diff --git a/src/figure_scaling_experiments.py b/src/figure_scaling_experiments.py index ef38801..51ecbab 100644 --- a/src/figure_scaling_experiments.py +++ b/src/figure_scaling_experiments.py @@ -12,9 +12,9 @@ experiments = [ 'lower_etoi', 'lichtman_chii2_smaller_g', - 'lichtman_chii2_different_time_consts', 'lichtman_chii2_distributed_params', - 'lichtman_chii2_different_seed' + 'lichtman_chii2_different_seed', + 'lichtman_chii2_different_seed_factor10per7' ] if len(sys.argv) > 1 and sys.argv[1] in experiments: @@ -34,15 +34,15 @@ from compute_scaling_experiments_helpers import state_scaling_lichtman_chii2_smaller_g as state save_data_dir = 'simulated_data/scaling_experiment_lichtman_chii2_smaller_g' name_extension = '_lichtman_chiI2_smaller_g' -elif simulation == 'lichtman_chii2_different_time_consts': - from compute_scaling_experiments_helpers import state_scaling_lichtman_chii2_different_time_consts as state - save_data_dir = 'simulated_data/scaling_experiment_lichtman_chii2_different_time_consts' - name_extension = '_lichtman_chiI2_different_time_consts' elif simulation == 'lichtman_chii2_distributed_params': from compute_scaling_experiments_helpers import state_scaling_lichtman_chii2_distributed_params as state save_data_dir = 'simulated_data/scaling_experiment_lichtman_chii2_distributed_params' name_extension = '_lichtman_chiI2_distributed_params' - +elif simulation == 'lichtman_chii2_different_seed_factor10per7': + from compute_scaling_experiments_helpers import state_scaling_lichtman_chii2_different_seed_factor10per7 as state + save_data_dir = 'simulated_data/scaling_experiment_lichtman_chii2_different_seed_factor10per7' + name_extension = '_lichtman_chiI2_different_seed_factor10per7' + linewidth=2. colors_state = { diff --git a/src/figure_temporal_hierarchy.py b/src/figure_temporal_hierarchy.py new file mode 100644 index 0000000..5262da1 --- /dev/null +++ b/src/figure_temporal_hierarchy.py @@ -0,0 +1,399 @@ +""" +Generates the matrix part of the Temporal Hierarchy figure, plus shows +the hierarchy in 3d by opening a link to the Scalable Brain Atlas in a +browser window. + +Author: Rembrandt Bakker & other authors from the publications +https://doi.org/10.1101/2023.03.23.533968 +and +https://doi.org/10.1371/journal.pcbi.1006359 +""" + +""" +python module imports +""" +import os +from os.path import join as path_join + +import copy +import json +import matplotlib +import matplotlib.pyplot as plt +from matplotlib.colors import to_hex +from matplotlib.colors import LinearSegmentedColormap +import numpy as np +import pandas as pd +from scipy import signal +from scipy.stats import median_abs_deviation + +# to organize areas by hierarchy +from scipy.optimize import minimize + +# to show brain in Scalable Brain Atlas Composer +import webbrowser + +""" +global parameters +""" +filepath = os.path.join(os.getcwd(), 'out/8c49a09f51f44fbb036531ce0719b5ba/4772f0b020c9f3310f4096a6db758343/7f5b8ecbfce8346314b050b58bbab1cf/') +filename = 'rate_histogram_areas.pkl' +spikeRateDataPickleFile = path_join(filepath, filename) +diagnosticPlots = False + +# What part of the simulation to use (12500 ms available) +t_total = 12500 +t_start = 2500 # to ignore the transient +t_stop = t_total + +# gross ordering of the brain into four lobes +right_ordering_four_lobes = { + # Occipital Lobe + 'cuneus': 'occipital', + 'lateraloccipital': 'occipital', + 'lingual': 'occipital', + 'pericalcarine': 'occipital', + + # Temporal Lobe + 'superiortemporal': 'temporal', + 'middletemporal': 'temporal', + 'inferiortemporal': 'temporal', + 'entorhinal': 'temporal', + 'parahippocampal': 'temporal', + 'temporalpole': 'temporal', + 'transversetemporal': 'temporal', + 'bankssts': 'temporal', + 'fusiform': 'temporal', # Note: fusiform can be considered part of both occipital and temporal lobes + 'insula': 'temporal', # Included with temporal lobe in this coarse division + + + # Parietal Lobe + 'precuneus': 'parietal', + 'supramarginal': 'parietal', + 'inferiorparietal': 'parietal', + 'superiorparietal': 'parietal', + 'postcentral': 'parietal', + 'posteriorcingulate': 'parietal', # Often associated with parietal lobe functions + 'isthmuscingulate': 'parietal', # Can be considered part of parietal lobe + + # Frontal Lobe + 'medialorbitofrontal': 'frontal', + 'lateralorbitofrontal': 'frontal', + 'parsopercularis': 'frontal', + 'parsorbitalis': 'frontal', + 'parstriangularis': 'frontal', + 'rostralmiddlefrontal': 'frontal', + 'caudalmiddlefrontal': 'frontal', + 'superiorfrontal': 'frontal', + 'frontalpole': 'frontal', + 'precentral': 'frontal', + 'paracentral': 'frontal', # check this one + 'rostralanteriorcingulate': 'frontal', # Associated with frontal lobe functions + 'caudalanteriorcingulate': 'frontal' # Associated with frontal lobe functions +} + +right_ordering = right_ordering_four_lobes + +""" +Load area-averaged firing rates, based on spike trains from a model run +""" +rate_per_area = pd.read_pickle(spikeRateDataPickleFile) +rate_per_area = rate_per_area*1000 # convert to Hz + +# Remove the transient +for area in rate_per_area.index: + rate_per_area[area] = rate_per_area[area][t_start:t_stop] + +time = range(len(rate_per_area.iloc[0])) + +# Area list +area_list = rate_per_area.index + +# Area-averaged firing rates as a matrix +rate_values = np.array(rate_per_area.tolist()) + +""" +Routine to select a peak from the cross correlation function. +Positive/negative peaks are treated separately. +Smaller (absolute) delays are preferred, larger delays are only accepted +if peak is more than a standard deviation taller. +""" +# source for confidence intervals: https://faculty.ksu.edu.sa/sites/default/files/probability_and_statistics_for_engineering_and_the_sciences.pdf +def selectPeak(cc,lags,sd): + peaks, props = signal.find_peaks(cc,height=sd,distance=5) + def sortFunc(i): + return np.abs(lags[i]) + bestPeaks = {} + bestHeights = {} + for delaySign in ['neg','pos']: + if delaySign == 'pos': + sortedPeaks = sorted(peaks[lags[peaks]>=0],key=sortFunc) + else: + sortedPeaks = sorted(peaks[lags[peaks]<0],key=sortFunc) + + bestPeak = np.nan + bestHeight = np.nan + if len(sortedPeaks): + idx = sortedPeaks[0] + bestPeak = lags[idx] + bestHeight = cc[idx] + for idx in sortedPeaks[1:]: + if cc[idx]>bestHeight+sd: + bestPeak = lags[idx] + bestHeight = cc[idx] + prev = idx + bestPeaks[delaySign] = bestPeak + bestHeights[delaySign] = bestHeight + return bestPeaks,bestHeights + +""" +Compute the cross-correlation functions between all pairs of brain areas +""" +max_lag = 50 +peak_matrix = np.zeros((len(area_list), len(area_list))) +for i,area in enumerate(area_list): + print(area) + diagnosticPlots = () + for j,other_area in enumerate(area_list): + signal1 = rate_per_area[area] + signal1 = signal1-signal1.mean() + signal1 /= signal1.std() + signal2 = rate_per_area[other_area] + signal2 = signal2-signal2.mean() + signal2 /= signal2.std() + + N = len(signal1) + nChunks = 9 + chunkSize = N//nChunks + + # Now divide the timeseries into 9 chunks + # and compute the crosscorrelation function for each chunk + cc_chunks = [] + for c in range(nChunks): + # autocorrelation method + chunk1 = signal1[c*chunkSize:(c+1)*chunkSize] + chunk1 = (chunk1-chunk1.mean())/chunk1.std() + chunk2 = signal2[c*chunkSize:(c+1)*chunkSize] + chunk2 = (chunk2-chunk2.mean())/chunk2.std() + cc = signal.correlate(chunk1, chunk2, mode='full')/chunkSize + lags = signal.correlation_lags(chunk1.size, chunk2.size, mode='full') + lag_indices = np.where((lags <= max_lag) & (lags >= -max_lag)) + cc = cc[lag_indices] + cc_chunks.append(cc) + + # Also compute the crosscorrelation function for the full data + cc_full = signal.correlate(signal1, signal2, mode='full')/N + lags = signal.correlation_lags(signal1.size, signal2.size, mode='full') + lag_indices = np.where((lags <= max_lag) & (lags >= -max_lag)) + cc_full = cc_full[lag_indices] + lags_full = lags[lag_indices] + + # Use the 9 chunks to compute the standard deviation of the cross-correlation functions + cc_chunks_np = np.array(cc_chunks) + cc_chunks_np -= cc_full # cc_full is used as an estimator for the average of cc_chunks + cc_chunk_std = cc_chunks_np.flatten().std() + + # The standard deviation of the full data cross correlation function is lower than that of the chunks + cc_full_std = cc_chunk_std/np.sqrt(nChunks) + + bestPeaks_full,bestHeights_full = selectPeak(cc_full,lags_full,cc_full_std) + if diagnosticPlots: + fig,ax = plt.subplots(1,1,figsize=[10,6]) + ax.plot(lags_full, cc_full, label=f'{area} vs. ' + other_area, color='orange',linewidth=5) + ax.vlines(x=bestPeaks_full['neg'], ymin=cc_full.min(), ymax=cc_full.max(), color="orange",linewidth=5) + ax.vlines(x=bestPeaks_full['pos'], ymin=cc_full.min(), ymax=cc_full.max(), color="orange",linewidth=5) + + # Independently compute the best negative/best positive delay peak for each chunk + bestNegPeak_chunks = [] + bestPosPeak_chunks = [] + for c in range(nChunks): + cc = cc_chunks[c] + lags = signal.correlation_lags(chunkSize, chunkSize, mode='full') + lag_indices = np.where((lags <= max_lag) & (lags >= -max_lag)) + lags = lags[lag_indices] + bestPeaks,bestHeights = selectPeak(cc,lags,cc_chunk_std) + + bestNegPeak_chunks.append(bestPeaks['neg']) + bestPosPeak_chunks.append(bestPeaks['pos']) + if diagnosticPlots: + ax.plot(lags, cc, label=f'{area} vs. ' + other_area, color='steelblue') + ax.vlines(x=bestPeaks['neg'], ymin=cc.min(), ymax=cc.max(), color="firebrick") + ax.vlines(x=bestPeaks['pos'], ymin=cc.min(), ymax=cc.max(), color="green") + + medNeg = np.median(bestNegPeak_chunks) + medPos = np.median(bestPosPeak_chunks) + madNeg = median_abs_deviation(bestNegPeak_chunks) + madPos = median_abs_deviation(bestPosPeak_chunks) + + # Decide which peaks are significant: + # 1. the peaks obtained for the chunks should not be too divergent, + # 2. the median delay of the peak for the chunks should be close to the estimated delay of the full data + # 3. the delay should not exceed 30 + peak_matrix[i][j] = None + acceptNeg = madNeg <= 4 and np.abs(bestPeaks_full['neg']-medNeg) <= 3 and np.abs(bestPeaks_full['neg'])<30 + acceptPos = madPos <= 4 and np.abs(bestPeaks_full['pos']-medPos) <= 3 and np.abs(bestPeaks_full['pos'])<30 + if acceptNeg and acceptPos: + if bestHeights_full['neg']>bestHeights_full['pos']+2*cc_full_std: + # negative delay peak is significantly higher than positive delay peak + peak_matrix[i][j] = bestPeaks_full['neg'] + elif bestHeights_full['pos']>bestHeights_full['neg']+2*cc_full_std: + # positive delay peak is significantly higher than negative delay peak + peak_matrix[i][j] = bestPeaks_full['pos'] + else: + peak_matrix[i][j] = None # no clear largest peak, undecided + else: + if acceptNeg: + peak_matrix[i][j] = bestPeaks_full['neg'] + if acceptPos: + peak_matrix[i][j] = bestPeaks_full['pos'] + + if diagnosticPlots: + mn = cc_full.min() + mx=cc_full.max() + mn = mn-0.5*(mx-mn) + mx = mx+0.5*(mx-mn) + if not acceptNeg: + ax.plot([lags[0],0,np.nan,lags[0],0],[mn,mx,np.nan,mx,mn], color='red',linewidth=5) + if not acceptPos: + ax.plot([0,lags[-1],np.nan,0,lags[-1]],[mn,mx,np.nan,mx,mn], color='red',linewidth=5) + + ax.set_xlabel("Time delay (s)") + ax.set_ylabel("Cross correlation (-)") + ax.set_title(f'{area} vs {other_area}: delay {peak_matrix[i][j]}, {madNeg}+{madPos}') + plt.show() + + plt.close(fig) + +peak_matrix = pd.DataFrame(peak_matrix, index=area_list, columns=area_list) + +""" +Routines for Hierarchical Clustering +""" +def dev(i, j, hierarchy, cc_matrix): + """ + Deviation function for the linear programming algorithm + determining the hierarchy. + """ + if np.isnan(cc_matrix[i][j]): + return 0 + else: + return (hierarchy[i] - hierarchy[j] - cc_matrix[i][j]) + +def hier_dev(hierarchy, cc_matrix): + deviation = 0. + for i in range(hierarchy.size): + for j in range(hierarchy.size): + deviation += (dev(i, j, hierarchy, cc_matrix)) ** 2 + return np.sqrt(deviation) + +def create_hierarchy(cc_matrix, areas): + """ + Determined the hierarchy for a given set of areas and their + cross-correlation peak matrix. + """ + res = minimize(hier_dev, np.random.rand( + cc_matrix[0].size), args=(cc_matrix,)) + hierarchy = res['x'] + index_transformation = np.argsort(hierarchy) + hierarchical_areas = copy.copy(areas) + hierarchical_areas = np.array(hierarchical_areas) + hierarchical_areas = hierarchical_areas[index_transformation] + hierarchy = hierarchy[index_transformation] + # Map hierarchy onto [0,1] interval + hierarchy -= np.min(hierarchy) + hierarchy /= np.max(hierarchy) + return res, hierarchy, hierarchical_areas, index_transformation + +""" +Perform Hierarchical Clustering +""" +cc_matrix = peak_matrix.to_numpy() # Rows: Source area, Cols: Target area +res, hierarchy, hierarchical_areas, index_transformation = create_hierarchy(cc_matrix, area_list) + +hierarchy_to_area_list = [] +for area in area_list: + hierarchy_to_area_list.append( + np.where(hierarchical_areas == area)[0][0] + ) + +cc_matrix_hier = cc_matrix[index_transformation][:, index_transformation] +cc_matrix_hier_masked = np.ma.masked_where(np.isnan(cc_matrix_hier), cc_matrix_hier) + +""" +Plot the Hierarchical Clustering matrix, with brain areas on the x- and y-axes, +x-symbols at NaN-value locations +""" +# Define colors for each group of brainregions +group_colors = { + 'frontal': '#AAFFAA', # green + 'occipital': '#EEFFEE', # light grey + 'temporal': '#BBBBFF', # blue + 'parietal': '#DDDDDD', # darker grey +} + +colormap = 'seismic' + +fig, ax = plt.subplots(figsize=(8, 6.5)) + +ax.set_xlabel('Source area\n$\longrightarrow$ temporal hierarchy $\longrightarrow$') +ax.set_ylabel('$\longrightarrow$ temporal hierarchy $\longrightarrow$\nTarget area') + +vlim = np.nanmax(np.abs(peak_matrix)) +im = ax.pcolormesh( + cc_matrix_hier_masked[:, :], + cmap = colormap, + vmin = -vlim, + vmax = vlim + ) + +ax.set_xticks(np.arange(0, len(hierarchical_areas), 1) + 0.5) +ax.set_yticks(np.arange(0, len(hierarchical_areas), 1) + 0.5) + +ax.set_xticklabels(hierarchical_areas[:], rotation='vertical') +ax.set_yticklabels(hierarchical_areas[:]) + +# Add background color to tick labels +xtick_labels = ax.get_xticklabels() +ytick_labels = ax.get_yticklabels() + +for label in xtick_labels: + area = label.get_text() + group = right_ordering[area] + label.set_backgroundcolor(group_colors[group]) + label.set_bbox(dict(facecolor=group_colors[group], edgecolor='none', pad=0)) # Add padding + +for label in ytick_labels: + area = label.get_text() + group = right_ordering[area] + label.set_backgroundcolor(group_colors[group]) + label.set_bbox(dict(facecolor=group_colors[group], edgecolor='none', pad=0)) # Add padding + +xNan,yNan = np.nonzero(np.isnan(cc_matrix_hier[:, :])) +plt.plot(yNan+0.5,xNan+0.5,'x',color='gray') +plt.plot(np.arange(len(area_list))+0.5,np.arange(len(area_list))+0.5,'.',color='gray') + +cbar = plt.colorbar(im, ax=ax) +cbar.set_label(r'Delay, positive when source leads target ($\mathrm{ms}$)') + +plt.savefig("figures/figure_temporal_hierarchy_matrix.pdf") + +# Prepare urls to display hierarchies in SBA computer +rescale = matplotlib.colors.Normalize(vmin=0, vmax=len(hierarchical_areas)-1) +cdict = {'red': [[0.0, 1.0, 1.0], + [1.0, 0.0, 0.0]], + 'green': [[0.0, 1.0, 1.0], + [1.0, 0.0, 0.0]], + 'blue': [[0.0, 1.0, 1.0], + [1.0, 0.2, 0.2]]} +mycmap = LinearSegmentedColormap('testCmap', segmentdata=cdict, N=256) + +urls = {} +for surface in ['gm','infl','wm']: + coloredRegions = { f'{source}(L,{surface})':[to_hex(mycmap(rescale(j)))[1:],1] for j,source in enumerate(hierarchical_areas)} + coloredRegions[f'unknown(L,{surface})'] = ["000000",1] + url = f'https://neuroinformatics.nl/sba-alpha/www/composer/?template=WKBetal10&scene={{"regions":{json.dumps(coloredRegions)},"background":"ffffff"}}' + url = url.replace('"','%22') + urls[surface] = url + +# Show hierarchy in SBA Composer as whitematter (use wm), grey matter (use gm) or inflated (use infl) surface +webbrowser.open(urls['infl']) +