diff --git a/openrefine/v0.8/create_diff_v0.8_v0.7.py b/openrefine/v0.8/create_diff_v0.8_v0.7.py new file mode 100644 index 0000000..f4629bf --- /dev/null +++ b/openrefine/v0.8/create_diff_v0.8_v0.7.py @@ -0,0 +1,37 @@ +import os +import pandas as pd + +# make sure the working directory when running this file is the project root of the git repository +os.chdir('../../') + +old = pd.read_csv('openrefine/v0.7/IHEC_metadata_harmonization.v0.7.csv') +old.index = old.EpiRR +new = pd.read_csv('openrefine/v0.8/IHEC_metadata_harmonization.v0.8.csv') +new.index = new.EpiRR + +removed_entries = old.EpiRR[~old.EpiRR.isin(new.EpiRR)] +removed_entries.to_csv('openrefine/v0.8/removed_entries.csv', index=False) + +old = old[~old.EpiRR.isin(removed_entries)] +old.drop(columns='taxon_id', inplace=True) +old['disease_ontology_term'] = old['disease_ontology_term'].str.upper() +old['donor_health_status2'] = old['donor_health_status'] +old['disease_ontology_term2'] = old['disease_ontology_term'] + +old.rename(columns={'donor_health_status': 'v0.7:donor_health_status:v0.8:donor_health_status', + 'disease_ontology_term': 'v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', + 'donor_health_status2': 'v0.7:donor_health_status:v0.8:disease', + 'disease_ontology_term2': 'v0.7:disease_ontology_term:v0.8:disease_ontology_curie', + 'sample_ontology_term': 'v0.7:sample_ontology_term:v0.8:sample_ontology_curie'}, inplace=True) +old.sort_index(1, inplace=True) + +new.rename(columns={'donor_health_status': 'v0.7:donor_health_status:v0.8:donor_health_status', + 'disease': 'v0.7:donor_health_status:v0.8:disease', + 'donor_health_status_ontology_curie': 'v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', + 'disease_ontology_curie': 'v0.7:disease_ontology_term:v0.8:disease_ontology_curie', + 'sample_ontology_curie': 'v0.7:sample_ontology_term:v0.8:sample_ontology_curie'}, inplace=True) +new.sort_index(1, inplace=True) + +diff_tbl = old.compare(new) +diff_tbl.rename(columns={'self': 'v0.7', 'other': 'v0.8'}, inplace=True) +diff_tbl.apply(lambda x: [x.dropna()], axis=1).to_json('openrefine/v0.8/diff_v0.7_v0.8.json', indent=True) diff --git a/openrefine/v0.8/diff_v0.7_v0.8.json b/openrefine/v0.8/diff_v0.7_v0.8.json new file mode 100644 index 0000000..be1a98b --- /dev/null +++ b/openrefine/v0.8/diff_v0.7_v0.8.json @@ -0,0 +1,14584 @@ +{ + "IHECRE00000001.4":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0678222", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Mammary Gland-breast Fibrocystic Disease", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Breast Carcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Mammary Gland-breast Fibrocystic Disease", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Breast Carcinoma" + } + ], + "IHECRE00000002.3":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0023487", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Acute Promyelocytic Leukemia With Pml-rara", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Acute Promyelocytic Leukemia with PML-RARA" + } + ], + "IHECRE00000003.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000004.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000006.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000008.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000009.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000010.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000011.3":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0023487", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Acute Promyelocytic Leukemia With Pml-rara", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Acute Promyelocytic Leukemia with PML-RARA" + } + ], + "IHECRE00000012.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000013.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000014.2":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C4015937", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C4015937" + } + ], + "IHECRE00000015.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000016.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000017.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000018.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C27914", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C1336077", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C27914" + } + ], + "IHECRE00000019.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000021.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C36080", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C1333295", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C36080", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Diffuse Large B-cell Lymphoma Germinal Center B-cell Type", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Diffuse Large B-Cell Lymphoma Germinal Center B-Cell Type", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Diffuse Large B-cell Lymphoma Germinal Center B-cell Type", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Diffuse Large B-Cell Lymphoma Germinal Center B-Cell Type" + } + ], + "IHECRE00000022.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000023.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000024.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000025.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000026.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C4015937", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C4015937" + } + ], + "IHECRE00000027.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000028.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000030.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000031.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C4015937", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C3171", 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"IHECRE00000040.2":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000041.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C4015937", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C4015937" + } + ], + "IHECRE00000042.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000043.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000044.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000045.3":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00000046.3":[ + { + 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AND\/OR category unknown" + } + ], + "IHECRE00000229.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Blood-peripheral Leukemia-chronic Lymphocytic Leukemia::diseased", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Chronic lymphocytic leukaemia stage A(II)", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Blood-peripheral Leukemia-chronic Lymphocytic Leukemia::diseased", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Chronic lymphocytic leukaemia stage A(II)" + } + ], + "IHECRE00000230.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0205647::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0205647::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0205647", + 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"IHECRE00000242.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0277545::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0277545::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0277545", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"None", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Disease type AND\/OR category unknown" + } + ], + "IHECRE00000243.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0334590", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma-anaplastic", + 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'v0.7')":"Diffuse Large B-cell Lymphoma Germinal Center B-cell Type", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Diffuse Large B-Cell Lymphoma Germinal Center B-Cell Type", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Diffuse Large B-cell Lymphoma Germinal Center B-cell Type", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Diffuse Large B-Cell Lymphoma Germinal Center B-Cell Type" + } + ], + "IHECRE00001557.1":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C4015937", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C3171", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C4015937" + } + ], + "IHECRE00001558.1":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00001559.1":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"None" + } + ], + "IHECRE00001851.6":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0279672", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Cervical Adenocarcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001852.7":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Healthy", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001853.6":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C2750272", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Breast Cancer (adenocarcinoma)", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Adenocarcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Breast Cancer (adenocarcinoma)", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001854.6":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Health Status Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001856.6":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"B Cell Lymphoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001857.6":[ + { + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001858.6":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0235974", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Pancreatic Carcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001859.6":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Health Status Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001860.6":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C1961099", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"T-acute Lymphoblastic Leukemia (t-all; Type Iii Cortical)", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"T Acute Lymphoblastic Leukemia", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"T-acute Lymphoblastic Leukemia (t-all; Type Iii Cortical)", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001861.7":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:CL448793", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C115222", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Human B Cell Non-hodgkin's Lymphoma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"B-Cell Non-Hodgkin Lymphoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Human B Cell Non-hodgkin's Lymphoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Health Status Unknown" + } + ], + "IHECRE00001862.2":[ + { + "('cell_type', 'v0.7')":"islet_cell", + "('cell_type', 'v0.8')":"pancreatic endocrine cell", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C37212", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Cancer::solid pseudopapillary neoplasm", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Solid Pseudopapillary Neoplasm of the Pancreas", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Cancer::solid pseudopapillary neoplasm", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Solid Pseudopapillary Neoplasm of the Pancreas", + "('v0.7:sample_ontology_term:v0.8:sample_ontology_curie', 'v0.8')":"CL:0008024" + } + ], + "IHECRE00001863.2":[ + { + "('cell_type', 'v0.7')":"islet_cell", + "('cell_type', 'v0.8')":"pancreatic endocrine cell", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C37212", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Cancer::solid pseudopapillary neoplasm", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Solid Pseudopapillary Neoplasm of the Pancreas", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Cancer::solid pseudopapillary neoplasm", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Solid Pseudopapillary Neoplasm of the Pancreas", + "('v0.7:sample_ontology_term:v0.8:sample_ontology_curie', 'v0.8')":"CL:0008024" + } + ], + "IHECRE00001864.2":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C3727", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Adenosquamous carcinoma::cancer", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Adenosquamous Carcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Adenosquamous carcinoma::cancer", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Adenosquamous Carcinoma" + } + ], + "IHECRE00001865.2":[ + { + "('cell_type', 'v0.7')":"islet_cell", + "('cell_type', 'v0.8')":"pancreatic endocrine cell", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C95584", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Cancer::neuroendocrine tumor grade 1;normal", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Pancreatic Neuroendocrine Tumor G1", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Cancer::neuroendocrine tumor grade 1;normal", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Pancreatic Neuroendocrine Tumor G1", + "('v0.7:sample_ontology_term:v0.8:sample_ontology_curie', 'v0.8')":"CL:0008024" + } + ], + "IHECRE00001866.2":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C4526", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Cancer::renal oncocytoma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Kidney Oncocytoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Cancer::renal oncocytoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Kidney Oncocytoma" + } + ], + "IHECRE00001867.2":[ + { + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C6650", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Adenocarcinoma ampulla of vater::cancer", + 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"('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Unknown" + } + ], + "IHECRE00003657.2":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Unknown" + } + ], + "IHECRE00003658.1":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Unknown" + } + ], + "IHECRE00003659.1":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Unknown" + } + ], + "IHECRE00003660.4":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Blood Leukemia-chronic Lymphocytic Leukemia", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Chronic lymphocytic leukemia of B-cell type in relapse", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Blood 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"IHECRE00003665.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells (surface mucous cells)", + "('cell_type', 'v0.8')":"foveolar cell of stomach", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003666.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells (surface mucous cells)", + "('cell_type', 'v0.8')":"foveolar cell of stomach", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003667.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells 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"('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003670.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells (surface mucous cells)", + "('cell_type', 'v0.8')":"foveolar cell of stomach", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003671.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells (surface mucous cells)", + "('cell_type', 'v0.8')":"foveolar cell of stomach", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003672.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells (surface mucous cells)", + "('cell_type', 'v0.8')":"foveolar cell of stomach", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003673.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells (surface mucous cells)", + "('cell_type', 'v0.8')":"foveolar cell of stomach", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003674.1":[ + { + "('cell_type', 'v0.7')":"normal human stomach foveolar epithelial cells (surface mucous cells)", + "('cell_type', 'v0.8')":"foveolar cell of stomach", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0699791", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Gastric Carcinoma" + } + ], + "IHECRE00003675.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Oligodendroglioma" + } + ], + "IHECRE00003676.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Oligodendroglioma" + } + ], + "IHECRE00003677.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma-anaplastic", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Adult Anaplastic Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma-anaplastic", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Adult Anaplastic Oligodendroglioma" + } + ], + "IHECRE00003678.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Oligodendroglioma" + } + ], + "IHECRE00003679.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Oligodendroglioma" + } + ], + "IHECRE00003680.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Oligodendroglioma" + } + ], + "IHECRE00003681.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma-anaplastic", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Adult Anaplastic Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma-anaplastic", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Adult Anaplastic Oligodendroglioma" + } + ], + "IHECRE00003682.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Brain Oligodendroglioma-anaplastic", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Adult Anaplastic Oligodendroglioma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Brain Oligodendroglioma-anaplastic", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Adult Anaplastic Oligodendroglioma" + } + ], + "IHECRE00003683.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0238463::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0238463::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0238463", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Papillary Carcinoma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"None", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Papillary Carcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Thyroid Gland Papillary Carcinoma" + } + ], + "IHECRE00003684.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0151468::NCIM:C0238463", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0151468", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0151468::NCIM:C0238463", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0238463", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Papillary Carcinoma::thyroid Tumor", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Thyroid Gland Follicular Adenoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Papillary Carcinoma::thyroid Tumor", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Thyroid Gland Papillary Carcinoma" + } + ], + "IHECRE00003685.2":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0238463::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0238463::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0238463", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Papillary Carcinoma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"None", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Papillary Carcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Thyroid Gland Papillary Carcinoma" + } + ], + "IHECRE00003686.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Papillary Carcinoma", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Thyroid Gland Papillary Carcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Papillary Carcinoma", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Thyroid Gland Papillary Carcinoma" + } + ], + "IHECRE00003687.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Blood Leukemia-chronic Lymphocytic Leukemia", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Chronic lymphocytic leukemia of B-cell type in relapse", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Blood Leukemia-chronic Lymphocytic Leukemia", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Chronic lymphocytic leukemia of B-cell type in relapse" + } + ], + "IHECRE00003688.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Blood Leukemia-chronic Lymphocytic Leukemia", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Chronic lymphocytic leukemia of B-cell type in relapse", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Blood Leukemia-chronic Lymphocytic Leukemia", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Chronic lymphocytic leukemia of B-cell type in relapse" + } + ], + "IHECRE00003689.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Blood Leukemia-chronic Lymphocytic Leukemia", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Chronic lymphocytic leukemia of B-cell type in relapse", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Blood Leukemia-chronic Lymphocytic Leukemia", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Chronic lymphocytic leukemia of B-cell type in relapse" + } + ], + "IHECRE00003690.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0018021::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0018021::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0018021", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"None", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Goiter" + } + ], + "IHECRE00003691.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Goiter", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Goiter" + } + ], + "IHECRE00003692.4":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0277545::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0277545::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0277545", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"None", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Unknown", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Disease type AND\/OR category unknown" + } + ], + "IHECRE00003693.3":[ + { + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.7')":"NCIM:C0018021::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:disease_ontology_curie', 'v0.8')":"NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.7')":"NCIM:C0018021::NCIM:C0549184", + "('v0.7:disease_ontology_term:v0.8:donor_health_status_ontology_curie', 'v0.8')":"NCIM:C0018021", + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"None", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Goiter" + } + ], + "IHECRE00003694.3":[ + { + "('v0.7:donor_health_status:v0.8:disease', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:disease', 'v0.8')":"Goiter", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.7')":"Thyroid Goiter", + "('v0.7:donor_health_status:v0.8:donor_health_status', 'v0.8')":"Goiter" + } + ], + "IHECRE00003695.3":[ + { + 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