A brief summary of the EpiATLAS project, for display alongside the data on the IHEC Data Portal.
Loosely inspired by the Roadmap page: https://egg2.wustl.edu/roadmap/web_portal/, though intended to be more brief than comprehensive.
Could also be comparable to McGill EMC's methods page, though modified for EpiATLAS: https://epigenomesportal.ca/edcc/doc/analysis_methods.html.
- Description
- Figures
- Resources
- Articles
Data Portal tracks represent a browsable subset of the complete EpiATLAS reprocessing.
| Assay | Provenance | Source naming | Format |
|---|---|---|---|
| ChIP-Seq | Signal p-value | pval.signal | bigWig |
| ChIP-Seq | Narrow peak | pval0.01.500K.bfilt.narrowPeak | bigBed |
| ChIP-Seq Input | Raw control | ctl_raw | bigWig |
| RNA-Seq stranded | Unique plus / minus raw | Unique.minusRaw / Unique.plusRaw | bigWig |
| RNA-Seq unstranded | Unique raw | Unique.raw | bigWig |
| WGBS | CPG coverage & methylation | cpg_coverage & cpg_methylation | bigWig |
| UCLA ChIP-Imputed | P-value | pval | bigWig |
| ChromHMM | ChromHMM | ChromHMM | bigBed |
- Comprehensive reprocessed and post-processed data is available via rsync/https/ftps.
- Metadata is mirrored in EpiRR.
- Raw, unprocessed data is archived at EGA, DDBJ and ENCODE.