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environment.yml
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environment.yml
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name: pyrewton_env
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- boost-cpp=1.70.0=h7b93d67_3
- bzip2=1.0.8=h516909a_3
- ca-certificates=2020.6.20=hecda079_0
- certifi=2020.6.20=py38h32f6830_0
- diamond=2.0.4=h56fc30b_0
- hmmer=3.3.1=he1b5a44_0
- icu=67.1=he1b5a44_0
- ld_impl_linux-64=2.35=h769bd43_9
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=9.3.0=h5dbcf3e_17
- libgomp=9.3.0=h5dbcf3e_17
- libstdcxx-ng=9.3.0=h2ae2ef3_17
- lz4-c=1.9.2=he1b5a44_3
- ncurses=6.2=he1b5a44_1
- openssl=1.1.1h=h516909a_0
- pip=20.2.3=py_0
- prodigal=2.6.3=h516909a_2
- python=3.8.5=h1103e12_9_cpython
- python_abi=3.8=1_cp38
- readline=8.0=he28a2e2_2
- setuptools=49.6.0=py38h32f6830_1
- sqlite=3.33.0=h4cf870e_0
- tk=8.6.10=hed695b0_0
- wheel=0.35.1=pyh9f0ad1d_0
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h516909a_1009
- zstd=1.4.5=h6597ccf_2
- pip:
- alabaster==0.7.12
- appdirs==1.4.4
- astroid==2.4.2
- attrs==20.2.0
- autopep8==1.5.4
- babel==2.8.0
- bandit==1.6.2
- beautifulsoup4==4.9.3
- biopython==1.78
- bioservices==1.7.9
- black==20.8b1
- chardet==3.0.4
- click==7.1.2
- colorama==0.4.3
- colorlog==4.2.1
- coverage==5.3
- docutils==0.16
- easydev==0.10.1
- flake8==3.8.4
- gevent==20.9.0
- gitdb==4.0.5
- gitpython==3.1.9
- greenlet==0.4.17
- grequests==0.6.0
- idna==2.10
- imagesize==1.2.0
- iniconfig==1.0.1
- isort==5.5.4
- jinja2==2.11.2
- joblib==0.17.0
- lazy-object-proxy==1.4.3
- lxml==4.5.2
- markupsafe==1.1.1
- mccabe==0.6.1
- mypy==0.782
- mypy-extensions==0.4.3
- numpy==1.19.2
- packaging==20.4
- pandas==1.1.3
- pathspec==0.8.0
- pbr==5.5.0
- pexpect==4.8.0
- pluggy==0.13.1
- ptyprocess==0.6.0
- py==1.9.0
- pycodestyle==2.6.0
- pydocstyle==5.1.1
- pyflakes==2.2.0
- pygments==2.7.1
- pylint==2.6.0
- pyparsing==2.4.7
- pytest==6.1.1
- pytest-cov==2.10.1
- pytest-ordering==0.6
- python-dateutil==2.8.1
- pytz==2020.1
- pyyaml==5.3.1
- regex==2020.9.27
- requests==2.24.0
- requests-cache==0.5.2
- scikit-learn==0.23.2
- scipy==1.5.2
- six==1.15.0
- sklearn==0.0
- smmap==3.0.4
- snowballstemmer==2.0.0
- soupsieve==2.0.1
- sphinx==3.2.1
- sphinx-rtd-theme==0.5.0
- sphinxcontrib-applehelp==1.0.2
- sphinxcontrib-devhelp==1.0.2
- sphinxcontrib-htmlhelp==1.0.3
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.3
- sphinxcontrib-serializinghtml==1.1.4
- stevedore==3.2.2
- suds-jurko==0.6
- threadpoolctl==2.1.0
- toml==0.10.1
- tqdm==4.50.0
- typed-ast==1.4.1
- typing-extensions==3.7.4.3
- urllib3==1.25.10
- wrapt==1.12.1
- xmltodict==0.12.0
- zope-event==4.5.0
- zope-interface==5.1.2
prefix: /home/em/miniconda3/envs/pyrewton_env