New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

UX ideas #9

Open

3 tasks

pakiessling opened this issue Dec 12, 2024 · 1 comment

pakiessling commented Dec 12, 2024 •

edited by niklasmueboe

Loading

Writing this down here so I dont forget

A helper function that takes a technology string and an anndata / mudata as input and sets the spatial graph to an appropriate preset with squidpy and sl.distance2connectivity
Checking if spatial neighbors / feature neighbors are available in all mudatas and notifying the user they forgot a preparation step / have a malformed object
Brainstorm ideas around the layer weighting input formatting, maybe there are already similiar tools

The text was updated successfully, but these errors were encountered:

Collaborator

niklasmueboe commented Dec 12, 2024

Regarding your three points (in the same order)

I am not sure whether I would add that to the package as that would pull further dependencies. But, nevertheless it is a good idea to at least add this to the documentation for now.
Agreed, some further improvement would increase usability.
Not sure what exactly you are referring to. Could you elaborate?

Also, contributions are always welcome ;)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment